Experiment summary for ENCSR000DYM
doi:10.17989/ENCSR000DYM
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- RELA
- Biosample summary
- Homo sapiens GM10847 treated with 25 ng/mL tumor necrosis factor for 6 hours
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- RELA ChIP-seq on human GM10847 treated with TNFa
- Treatments
- 25 ng/mL tumor necrosis factor (UniProtKB:P01375) for 6 hours
- Nucleic acid type
- DNA
- Fragmentation methods
- see document
- Platform
- Illumina Genome Analyzer
- Controls
Attribution
ENCODE2 project
- Lab
- Michael Snyder, Stanford
- Award
- U54HG004558 (Michael Snyder, Stanford)
- Project
- ENCODE
- External resources
- Date submitted
- October 29, 2011
- Date released
- October 29, 2011
- Submitter comment
- ENCODE4 pipeline run failed at chip.align step.
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Antibody | Library |
---|---|---|---|---|---|
5 | 1 | Homo sapiens GM10847 cell line treated with 25 ng/mL tumor necrosis factor for 6 hours | ENCBS186AAA | ENCAB000AJG | ENCLB209AMG |
3 | 1 | Homo sapiens GM10847 cell line treated with 25 ng/mL tumor necrosis factor for 6 hours | ENCBS186AAA | ENCAB000AJG | ENCLB209AMJ |
4 | 1 | Homo sapiens GM10847 cell line treated with 25 ng/mL tumor necrosis factor for 6 hours | ENCBS186AAA | ENCAB000AJG | ENCLB209AMF |