Experiment summary for ENCSR000DXP

Summary

Status
released
Assay
ChIP-seq
Target
H3K27me3
Biosample summary
Homo sapiens SK-N-SH treated with 6 μM all-trans-retinoic acid for 48 hours
Biosample Type
cell line
Replication type
isogenic
Description
H3K27me3 ChIP-seq on human SK-N-SH treated with 6uM retinoic acid for 48 hours
Treatments
6 μM all-trans-retinoic acid (CHEBI:15367) for 48 hour
Nucleic acid type
DNA
Lysis method
see document
Extraction method
see document
Fragmentation method
see document
Size selection method
see document
Strand specificity
Non-strand-specific
Controls

Attribution

ENCODE2 project
Lab
John Stamatoyannopoulos, UW
Award
U54HG004592 (John Stamatoyannopoulos, UW)
Project
ENCODE
Date submitted
February 11, 2011
Date released
February 11, 2011
Related datasets
ENCSR192FFL 
Reference epigenome for SK-N-SH (treated with all-trans-retinoic acid)
Submitter comment
Replicate 2,1 of this experiment was previously attributed to biosample ENCBS404ENC and replicate 1,1 of this experiment was previously attributed to biosample ENCBS404ENC but they have since been corrected to the current biosamples. Please note that the biosample term has remain unchanged.
Tags
Search for all Experiment with internal tag ENCYCLOPEDIAv4

Isogenic replicates

Isogenic replicateTechnical replicateSummaryBiosampleAntibodyLibrary
21SK-N-SH cell line treated with 6 μM all-trans-retinoic acid for 48 hoursENCBS606NNZENCAB000ANBENCLB023YVU
11SK-N-SH cell line treated with 6 μM all-trans-retinoic acid for 48 hoursENCBS172JMMENCAB000ANBENCLB620VEG