Experiment summary for ENCSR000DVP
doi:10.17989/ENCSR000DVP
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- CTCF
- Biosample summary
- Homo sapiens endothelial cell of umbilical vein newborn
- Biosample Type
- primary cell
- Replication type
- isogenic
- Description
- CTCF ChIP-seq on human HUVEC
- Nucleic acid type
- DNA
- Fragmentation methods
- see document
- Platform
- Illumina Genome Analyzer II
- Controls
Attribution
ENCODE2 project
- Lab
- John Stamatoyannopoulos, UW
- Award
- U54HG004592 (John Stamatoyannopoulos, UW)
- Project
- ENCODE
- External resources
- Date submitted
- March 17, 2011
- Date released
- March 17, 2011
- Annotation (gkmsvm-model)
- Annotation (physical modeling)
- Annotation (BPNet-model)
- Submitter comment
- Replicate 2,1 of this experiment was previously attributed to biosample ENCBS677AAA and replicate 1,1 of this experiment was previously attributed to biosample ENCBS677AAA but they have since been corrected to the current biosamples. Please note that the biosample term has remain unchanged. As of August 2022, the donors associated with the biosamples in this dataset were changed from ENCDO342AAA to ENCDO466MPW and ENCDO560UMK. See PMID:32728101.
- Tags
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Antibody | Library |
|---|---|---|---|---|---|
| 2 | 1 | Homo sapiens newborn endothelial of umbilical vein primary cell | ENCBS834QWR | ENCAB000AFP | ENCLB154UHE |
| 1 | 1 | Homo sapiens newborn endothelial of umbilical vein primary cell | ENCBS404KTX | ENCAB000AFP | ENCLB400XDW |