Experiment summary for ENCSR000DVI

  • Status: released

Summary

Assay
ChIP-seq
Target
CTCF
Biosample summary
Homo sapiens retinal pigment epithelial cell
Biosample Type
primary cell
Replication type
isogenic
Description
CTCF ChIP-seq on human HRPEpiC
Nucleic acid type
DNA
Lysis method
see document
Extraction method
see document
Fragmentation method
see document
Size selection method
see document
Strand specificity
Non-strand-specific
Controls

Attribution

ENCODE2 project
Lab
John Stamatoyannopoulos, UW
Award
U54HG004592 (John Stamatoyannopoulos, UW)
Project
ENCODE
Date released
March 17, 2011
Submitter comment
Replicate 2,1 of this experiment was previously attributed to biosample ENCBS420ENC but it has since been corrected to the current biosample. Please note that the biosample term has remain unchanged.
Tags
ENCYCLOPEDIAv4 tag

Isogenic replicates

Isogenic replicateTechnical replicateSummaryBiosampleAntibodyLibrary
21retinal pigment epithelial primary cellENCBS925NLTENCAB000AFPENCLB464XDK
11retinal pigment epithelial primary cellENCBS420ENCENCAB000AFPENCLB323VYI

Documents

growth protocol
Description excerpt: Propagation of human retinal pigment epithelial cells (HRPEpiC, ScienCell)…
Description
Propagation of human retinal pigment epithelial cells (HRPEpiC, ScienCell) Protocol
Submitted by
John Stamatoyannopoulos
Lab
John Stamatoyannopoulos, UW
general protocol
Description: Track description for UCSC Genome Browser composite track hg19/wgEncodeUwTfbs
Submitted by
Carrie Davis
Lab
John Stamatoyannopoulos, UW
pipeline protocol
Description: ChIP mapping pipeline: Includes overview and references for the pipeline
Submitted by
Kathrina Onate
Lab
J. Michael Cherry, Stanford
pipeline protocol
Description: ChIP pipeline: Details for both histone and transcription factor
Submitted by
Kathrina Onate
Lab
J. Michael Cherry, Stanford