1. Experiments
  2. ChIP-seq
  3. Homo sapiens
  4. mammary epithelial cell

Experiment summary for ENCSR000DUS

doi:10.17989/ENCSR000DUS

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
CTCF
Biosample summary
Homo sapiens mammary epithelial cell female
Biosample Type
primary cell
Replication type
isogenic
Description
CTCF ChIP-seq on human HMEC
Nucleic acid type
DNA
Fragmentation methods
see document
Controls

Attribution

ENCODE2 project
Lab
John Stamatoyannopoulos, UW
Award
U54HG004592 (John Stamatoyannopoulos, UW)
Project
ENCODE
Date submitted
June 25, 2011
Date released
January 17, 2012
Reference Epigenome
ENCSR460EGF 
Annotation (gkmsvm-model)
Annotation (physical modeling)
Annotation (BPNet-model)
Submitter comment
Replicate 2,1 of this experiment was previously attributed to biosample ENCBS090ENC and replicate 1,1 of this experiment was previously attributed to biosample ENCBS090ENC but they have since been corrected to the current biosamples. Please note that the biosample term has remain unchanged.
Tags
Search for all Experiment with internal tag RegulomeDB_1_0Search for all Experiment with internal tag ccre_inputv2Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag RegulomeDB_2_1Search for all Experiment with internal tag ccre_inputv1Search for all Experiment with internal tag ENCYCLOPEDIAv2Search for all Experiment with internal tag ENCYCLOPEDIAv1Search for all Experiment with internal tag RegulomeDB_2_2

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Antibody
Library
21Homo sapiens female mammary epithelial primary cellENCBS721SRVENCAB000AFPENCLB579VXJ
11Homo sapiens female mammary epithelial primary cellENCBS341YNWENCAB000AFPENCLB269VXN

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