Experiment summary for ENCSR000DUS

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
CTCF
Biosample summary
Homo sapiens mammary epithelial cell female
Biosample Type
primary cell
Replication type
isogenic
Description
CTCF ChIP-seq on human HMEC
Nucleic acid type
DNA
Lysis method
see document
Extraction method
see document
Fragmentation methods
see document
Size selection method
see document
Strand specificity
Non-strand-specific
Controls

Attribution

ENCODE2 project
Lab
John Stamatoyannopoulos, UW
Award
U54HG004592 (John Stamatoyannopoulos, UW)
Project
ENCODE
Date submitted
June 25, 2011
Date released
January 17, 2012
Related datasets
ENCSR460EGF 
Reference epigenome for human mammary epithelial cell
Submitter comment
Replicate 2,1 of this experiment was previously attributed to biosample ENCBS090ENC and replicate 1,1 of this experiment was previously attributed to biosample ENCBS090ENC but they have since been corrected to the current biosamples. Please note that the biosample term has remain unchanged.
Tags
Search for all Experiment with internal tag ENCYCLOPEDIAv5Search for all Experiment with internal tag ccre_inputv2Search for all Experiment with internal tag ccre_inputv1Search for all Experiment with internal tag ENCYCLOPEDIAv4

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Antibody
Library
21female mammary epithelial primary cellENCBS721SRVENCAB000AFPENCLB579VXJ
11female mammary epithelial primary cellENCBS341YNWENCAB000AFPENCLB269VXN