1. Experiments
  2. ChIP-seq
  3. Homo sapiens
  4. Caco-2

Experiment summary for ENCSR000DQN

doi:10.17989/ENCSR000DQN

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
CTCF
Biosample summary
Homo sapiens Caco-2
Biosample Type
cell line
Replication type
isogenic
Description
CTCF ChIP-seq on human Caco-2
Nucleic acid type
DNA
Fragmentation methods
see document
Controls

Attribution

ENCODE2 project
Lab
John Stamatoyannopoulos, UW
Award
U54HG004592 (John Stamatoyannopoulos, UW)
Project
ENCODE
Date submitted
March 17, 2011
Date released
March 17, 2011
Annotation (gkmsvm-model)
Annotation (physical modeling)
Annotation (BPNet-model)
Submitter comment
Replicate 1,1 of this experiment was previously attributed to biosample ENCBS391ENC and replicate 2,1 of this experiment was previously attributed to biosample ENCBS391ENC but they have since been corrected to the current biosamples. Please note that the biosample term has remain unchanged.
Tags
Search for all Experiment with internal tag RegulomeDB_1_0Search for all Experiment with internal tag ccre_inputv2Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag RegulomeDB_2_1Search for all Experiment with internal tag ccre_inputv1Search for all Experiment with internal tag ENCYCLOPEDIAv2Search for all Experiment with internal tag ENCYCLOPEDIAv1Search for all Experiment with internal tag RegulomeDB_2_2

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Antibody
Library
11Homo sapiens Caco-2 cell lineENCBS530YXLENCAB000AFPENCLB586IHD
21Homo sapiens Caco-2 cell lineENCBS700RKGENCAB000AFPENCLB559RFU

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