Experiment summary for ENCSR000CVT
doi:10.17989/ENCSR000CVT
Summary
- Status
- released
- Assay
- RNA-seq (total RNA-seq)
- Biosample summary
- Homo sapiens GM12878 nucleolus fraction
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- The libraries contained in this experiment come from the nucleolar fraction of independent growths of cell line GM12878. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
- Nucleic acid type
- RNA
- Depleted in
- rRNA
- Size range
- >200
- Fragmentation methods
- see document
- Strand specificity
- Strand-specific (reverse)
- Spike-ins datasets
- ENCSR470JZL
- Platform
- Illumina HiSeq 2000
Attribution
ENCODE2 project
- Lab
- Thomas Gingeras, CSHL
- Award
- U54HG004557 (Thomas Gingeras, CSHL)
- Project
- ENCODE
- External resources
- GEO:GSE90276
- UCSC-ENCODE-hg19:wgEncodeEH003034
- GEO-obsolete:GSM984605
- Date submitted
- July 13, 2011
- Date released
- March 29, 2013
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 4 | 1 | Homo sapiens GM12878 cell line nucleolus fraction | ENCBS758AAA | ENCLB555AKL |
| 3 | 1 | Homo sapiens GM12878 cell line nucleolus fraction | ENCBS756AAA | ENCLB555AKM |