Experiment summary for ENCSR000CVF
doi:10.17989/ENCSR000CVF
Summary
- Status
- released
- Assay
- small RNA-seq
- Biosample summary
- Homo sapiens mammary epithelial cell female adult (23 years)
- Biosample Type
- primary cell
- Replication type
- unreplicated
- Description
- The libraries contained in this experiment come from mammary epithelial primary whole cells, HMEpC isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning..
- Treatments
- Tobacco Acid Pyrophosphatase for 1 hour
- Nucleic acid type
- RNA
- Depleted in
- rRNA
- Size range
- <200
- Fragmentation methods
- see document
- Strand specificity
- Strand-specific (forward)
- Platform
- Illumina HiSeq 2000
Attribution
ENCODE2 project
- Lab
- Thomas Gingeras, CSHL
- Award
- U54HG004557 (Thomas Gingeras, CSHL)
- Project
- ENCODE
- External resources
- References
- Date submitted
- January 19, 2011
- Date released
- July 9, 2012
- Reference Epigenome
- ENCSR460EGF
- Annotation (physical modeling)
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 1 | Homo sapiens female adult (23 years) mammary epithelial primary cell | ENCBS456ENC | ENCLB555ATN |