Experiment summary for ENCSR000CTO
doi:10.17989/ENCSR000CTO
Summary
- Status
- released
- Assay
- polyA plus RNA-seq
- Biosample summary
- Homo sapiens MCF-7 nuclear fraction
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- The libraries contained in this experiment come from the nuclear fraction of independent growths of cell line MCF-7. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Poly-A+ RNA > 200 nucleotides in size.
- Nucleic acid type
- polyadenylated mRNA
- Depleted in
- rRNA
- Size range
- >200
- Fragmentation methods
- see document
- Strand specificity
- Strand-specific (reverse)
- Spike-ins datasets
- ENCSR402QNO
- Platform
- Illumina HiSeq 2000
Attribution
ENCODE2 project
- Lab
- Thomas Gingeras, CSHL
- Award
- U54HG004557 (Thomas Gingeras, CSHL)
- Project
- ENCODE
- External resources
- UCSC-ENCODE-hg19:wgEncodeEH002627
- GEO-obsolete:GSM981245
- GEO:GSE90261
- Date submitted
- July 13, 2011
- Date released
- June 21, 2012
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
---|---|---|---|---|
4 | 1 | Homo sapiens MCF-7 cell line nuclear fraction | ENCBS564FRY | ENCLB555AVS |
3 | 1 | Homo sapiens MCF-7 cell line nuclear fraction | ENCBS104ENC | ENCLB555AVR |