Experiment summary for ENCSR000CTO

doi:10.17989/ENCSR000CTO

Summary

Status
released
Assay
polyA plus RNA-seq
Biosample summary
Homo sapiens MCF-7 nuclear fraction
Biosample Type
cell line
Replication type
isogenic
Description
The libraries contained in this experiment come from the nuclear fraction of independent growths of cell line MCF-7. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Poly-A+ RNA > 200 nucleotides in size.
Nucleic acid type
polyadenylated mRNA
Depleted in
rRNA
Size range
>200
Fragmentation methods
see document
Strand specificity
Strand-specific (reverse)
Spike-ins datasets
ENCSR402QNO

Attribution

ENCODE2 project
Lab
Thomas Gingeras, CSHL
Award
U54HG004557 (Thomas Gingeras, CSHL)
Project
ENCODE
External resources
Date submitted
July 13, 2011
Date released
June 21, 2012
Tags
Search for all Experiment with internal tag ENCYCLOPEDIAv5Search for all Experiment with internal tag ENCYCLOPEDIAv4

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Library
41Homo sapiens MCF-7 cell line nuclear fractionENCBS564FRYENCLB555AVS
31Homo sapiens MCF-7 cell line nuclear fractionENCBS104ENCENCLB555AVR