1. Experiments
  2. small RNA-seq
  3. Homo sapiens
  4. A549

Experiment summary for ENCSR000CSO

doi:10.17989/ENCSR000CSO

Summary

Status
released
Assay
small RNA-seq
Biosample summary
Homo sapiens A549
Biosample Type
cell line
Replication type
isogenic
Description
The libraries contained in this experiment come from whole cell extracts from independent growths of cell line, A549. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with AP-TAP prior to cloning.
Treatments
Antarctic Phosphatase for 30 minutes, Tobacco Acid Pyrophosphatase for 1 hour
Nucleic acid type
RNA
Depleted in
rRNA
Size range
<200
Fragmentation methods
see document
Strand specificity
Strand-specific (forward)

Attribution

ENCODE2 project
Lab
Thomas Gingeras, CSHL
Award
U54HG004557 (Thomas Gingeras, CSHL)
Project
ENCODE
Date submitted
January 19, 2011
Date released
July 9, 2012
Tags
Search for all Experiment with internal tag ENCYCLOPEDIAv2

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Library
41Homo sapiens A549 cell lineENCBS451ENCENCLB555AQP
31Homo sapiens A549 cell lineENCBS448ENCENCLB555AQZ

Files

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Output type
Replicates

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