Experiment summary for ENCSR000CRH
doi:10.17989/ENCSR000CRH
Summary
- Status
- released
- Assay
- small RNA-seq
- Biosample summary
- Homo sapiens endothelial cell of umbilical vein nuclear fraction newborn
- Biosample Type
- primary cell
- Replication type
- isogenic
- Description
- The libraries contained in this experiment come from umbilical vein endothelial primary nuclear extracts, HUVEC isolated from independent donors. They are stranded SE36 Illumina GAIIx RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
- Treatments
- Tobacco Acid Pyrophosphatase for 1 hour
- Nucleic acid type
- RNA
- Depleted in
- rRNA
- Size range
- <200
- Fragmentation methods
- see document
- Strand specificity
- Strand-specific (forward)
- Platform
- Illumina Genome Analyzer IIx
Attribution
ENCODE2 project
- Lab
- Thomas Gingeras, CSHL
- Award
- U54HG004557 (Thomas Gingeras, CSHL)
- Project
- ENCODE
- External resources
- Date submitted
- January 19, 2011
- Date released
- February 22, 2012
- Annotation (physical modeling)
- Submitter comment
- As of August 2022, the donors associated with the biosamples in this dataset were changed from ENCDO341AAA to ENCDO466MPW and ENCDO560UMK. See PMID:32728101.
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
---|---|---|---|---|
3 | 1 | Homo sapiens newborn endothelial of umbilical vein primary cell nuclear fraction | ENCBS531ENC | ENCLB555ANA |
4 | 1 | Homo sapiens newborn endothelial of umbilical vein primary cell nuclear fraction | ENCBS533ENC | ENCLB555AMZ |