Experiment summary for ENCSR000CRA
doi:10.17989/ENCSR000CRA
Summary
- Status
- released
- Assay
- small RNA-seq
- Biosample summary
- Homo sapiens K562 nucleoplasmic fraction
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- The libraries contained in this experiment come from nucleoplasm extracts from independent growths of cell line, K562. They are stranded SE36 Illumina GAIIx RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
- Treatments
- Tobacco Acid Pyrophosphatase for 1 hour
- Nucleic acid type
- RNA
- Depleted in
- rRNA
- Size range
- <200
- Fragmentation methods
- see document
- Strand specificity
- Strand-specific (forward)
- Platform
- Illumina Genome Analyzer IIx
Attribution
ENCODE2 project
- Lab
- Thomas Gingeras, CSHL
- Award
- U54HG004557 (Thomas Gingeras, CSHL)
- Project
- ENCODE
- External resources
- Date submitted
- January 19, 2011
- Date released
- February 22, 2012
- Annotation (physical modeling)
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 3 | 1 | Homo sapiens K562 cell line nucleoplasmic fraction | ENCBS749AAA | ENCLB555AXQ |
| 4 | 1 | Homo sapiens K562 cell line nucleoplasmic fraction | ENCBS752AAA | ENCLB555AXP |