Experiment summary for ENCSR000CQK

doi:10.17989/ENCSR000CQK

Summary

Status
released
Assay
polyA minus RNA-seq
Biosample summary
Homo sapiens HepG2 nuclear fraction
Biosample Type
cell line
Replication type
isogenic
Description
The libraries contained in this experiment come from the nuclear fraction of independent growths of cell line HepG2. They are stranded PE76 Illumina GAIIx RNA-Seq libraries from rRNA-depleted and DSN normalized Poly-A- RNA > 200 nucleotides in size.
Treatments
duplex-specific nuclease (DSN) normalization
Nucleic acid type
RNA
Depleted in
polyadenylated mRNA, rRNA
Size range
>200
Fragmentation methods
see document
Strand specificity
Strand-specific (reverse)
Spike-ins datasets
ENCSR402QNO

Attribution

ENCODE2 project
Lab
Thomas Gingeras, CSHL
Award
U54HG004557 (Thomas Gingeras, CSHL)
Project
ENCODE
External resources
Date submitted
July 13, 2011
Date released
October 17, 2011
Tags
Search for all Experiment with internal tag ENCYCLOPEDIAv1Search for all Experiment with internal tag ENCYCLOPEDIAv2

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Library
21Homo sapiens HepG2 cell line nuclear fractionENCBS745AAAENCLB555APN
11Homo sapiens HepG2 cell line nuclear fractionENCBS742AAAENCLB555APO