Experiment summary for ENCSR000CPV

doi:10.17989/ENCSR000CPV

Summary

Status
released
Assay
polyA minus RNA-seq
Biosample summary
Homo sapiens skeletal muscle myoblast
Biosample Type
primary cell
Replication type
isogenic
Description
RNA-seq on human HSMM whole cell long polyA- RNA
Treatments
duplex-specific nuclease (DSN) normalization
Nucleic acid type
RNA
Depleted in
polyadenylated mRNA, rRNA
Size range
>200
Fragmentation methods
see document
Strand specificity
Strand-specific (reverse)
Spike-ins datasets
ENCSR402QNO

Attribution

ENCODE2 project
Lab
Thomas Gingeras, CSHL
Award
U54HG004557 (Thomas Gingeras, CSHL)
Project
ENCODE
External resources
Date submitted
July 13, 2011
Date released
October 17, 2011
Submitter comment
Fastq file ENCFF000GOO contains reads of mixed lengths. Read lengths followed by respective number of reads: (72, 83147535), (76, 40557587)
Tags
Search for all Experiment with internal tag ENCYCLOPEDIAv1Search for all Experiment with internal tag ENCYCLOPEDIAv2

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Library
21Homo sapiens skeletal muscle myoblast primary cellENCBS470ENCENCLB555ATF
11Homo sapiens skeletal muscle myoblast primary cellENCBS469ENCENCLB555ATG