Experiment summary for ENCSR000CPS

doi:10.17989/ENCSR000CPS

Summary

Status
released
Assay
polyA plus RNA-seq
Biosample summary
Homo sapiens K562 nuclear fraction
Biosample Type
cell line
Replication type
isogenic
Description
The libraries contained in this experiment come from the nuclear fraction of independent growths of cell line K562. They are stranded PE76 Illumina GAIIx RNA-Seq libraries from rRNA-depleted Poly-A+ RNA > 200 nucleotides in size.
Nucleic acid type
polyadenylated mRNA
Depleted in
rRNA
Size range
>200
Fragmentation methods
see document
Strand specificity
Strand-specific (reverse)
Spike-ins datasets
ENCSR402QNO

Attribution

ENCODE2 project
Lab
Thomas Gingeras, CSHL
Award
U54HG004557 (Thomas Gingeras, CSHL)
Project
ENCODE
External resources
Date submitted
July 13, 2011
Date released
October 17, 2011
Tags
Search for all Experiment with internal tag ENCYCLOPEDIAv5Search for all Experiment with internal tag ENCYCLOPEDIAv4

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Library
11Homo sapiens K562 cell line nuclear fractionENCBS722AAAENCLB555ALY
21Homo sapiens K562 cell line nuclear fractionENCBS725AAAENCLB555ALX