Experiment summary for ENCSR000CPJ

doi:10.17989/ENCSR000CPJ

Summary

Status
released
Assay
polyA plus RNA-seq
Biosample summary
Homo sapiens keratinocyte nuclear fraction female
Biosample Type
primary cell
Replication type
isogenic
Description
The libraries contained in this experiment come from independent growths of skin keratinocytes primary nuclear extracts, NHEK. They are stranded PE76 Illumina GAIIx RNA-Seq libraries from rRNA-depleted Poly-A+ RNA > 200 nucleotides in size.
Nucleic acid type
polyadenylated mRNA
Depleted in
rRNA
Size range
>200
Fragmentation methods
see document
Strand specificity
Strand-specific (reverse)
Spike-ins datasets
ENCSR402QNO

Attribution

ENCODE2 project
Lab
Thomas Gingeras, CSHL
Award
U54HG004557 (Thomas Gingeras, CSHL)
Project
ENCODE
External resources
Date submitted
July 13, 2011
Date released
October 17, 2011
Tags
Search for all Experiment with internal tag ENCYCLOPEDIAv1Search for all Experiment with internal tag ENCYCLOPEDIAv2

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Library
31Homo sapiens female keratinocyte primary cell nuclear fractionENCBS566ENCENCLB555ATL
41Homo sapiens female keratinocyte primary cell nuclear fractionENCBS568ENCENCLB555ATM