Experiment summary for ENCSR000CPB
doi:10.17989/ENCSR000CPB
Summary
- Status
- released
- Assay
- polyA plus RNA-seq
- Biosample summary
- Homo sapiens endothelial cell of umbilical vein nuclear fraction newborn
- Biosample Type
- primary cell
- Replication type
- isogenic
- Description
- RNA-seq on human HUVEC nucleus long polyA+ RNA
- Nucleic acid type
- polyadenylated mRNA
- Depleted in
- rRNA
- Size range
- >200
- Fragmentation methods
- see document
- Strand specificity
- Strand-specific (reverse)
- Spike-ins datasets
- ENCSR402QNO
- Platform
- Illumina Genome Analyzer IIx
Attribution
ENCODE2 project
- Lab
- Thomas Gingeras, CSHL
- Award
- U54HG004557 (Thomas Gingeras, CSHL)
- Project
- ENCODE
- External resources
- GEO-obsolete:GSM758565
- UCSC-ENCODE-hg19:wgEncodeEH000157
- GEO:GSE78590
- Date submitted
- July 13, 2011
- Date released
- October 17, 2011
- Submitter comment
- As of August 2022, the donors associated with the biosamples in this dataset were changed from ENCDO341AAA to ENCDO466MPW and ENCDO560UMK. See PMID:32728101.
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 4 | 1 | Homo sapiens newborn endothelial of umbilical vein primary cell nuclear fraction | ENCBS533ENC | ENCLB555AOY |
| 3 | 1 | Homo sapiens newborn endothelial of umbilical vein primary cell nuclear fraction | ENCBS531ENC | ENCLB555ATW |