Experiment summary for ENCSR000CMY

doi:10.17989/ENCSR000CMY

Summary

Status
released
Assay
DNase-seq
Biosample summary
Mus musculus strain ~20% C57/B6J (MGI.D:C57BL), ~75% 129/Sv (MGI.D:129) and ~5% SJL strains (MGI.D:SJL) WW6 genetically modified (knockout) using homologous recombination targeting M. musculus Hist1h1c, (knockout) using homologous recombination targeting M. musculus Hist1h1d, (knockout) using homologous recombination targeting M. musculus Hist1h1e
Biosample Type
cell line
Replication type
isogenic
Description
DNase-seq on mouse ES-WW6 F1KO
Nucleic acid type
DNA
Fragmentation methods
see document

Attribution

ENCODE Mouse Project
Lab
John Stamatoyannopoulos, UW
Award
RC2HG005654 (John Stamatoyannopoulos, UW)
Project
ENCODE
Date submitted
May 6, 2011
Date released
April 17, 2013
Annotation (gkmsvm-model)
Tags
Search for all Experiment with internal tag ccre_inputv2Search for all Experiment with internal tag ccre_inputv1Search for all Experiment with internal tag ENCYCLOPEDIAv1Search for all Experiment with internal tag ENCYCLOPEDIAv2

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Library
11Mus musculus strain ~20% C57/B6J (MGI.D:C57BL), ~75% 129/Sv (MGI.D:129) and ~5% SJL strains (MGI.D:SJL) WW6 cell line genetically modified (knockout) using homologous recombination targeting M. musculus Hist1h1c, genetically modified (knockout) using homologous recombination targeting M. musculus Hist1h1d, genetically modified (knockout) using homologous recombination targeting M. musculus Hist1h1eENCBS121ENCENCGM993OPN, ENCGM387XZX, ENCGM245FBVENCLB144XPP
21Mus musculus strain ~20% C57/B6J (MGI.D:C57BL), ~75% 129/Sv (MGI.D:129) and ~5% SJL strains (MGI.D:SJL) WW6 cell line genetically modified (knockout) using homologous recombination targeting M. musculus Hist1h1c, genetically modified (knockout) using homologous recombination targeting M. musculus Hist1h1d, genetically modified (knockout) using homologous recombination targeting M. musculus Hist1h1eENCBS134ZWPENCGM993OPN, ENCGM387XZX, ENCGM245FBVENCLB177WRU