Experiment summary for ENCSR000CMY
doi:10.17989/ENCSR000CMY
Summary
- Status
- released
- Assay
- DNase-seq
- Biosample summary
- Mus musculus strain ~20% C57/B6J (MGI.D:C57BL), ~75% 129/Sv (MGI.D:129) and ~5% SJL strains (MGI.D:SJL) WW6 genetically modified (knockout) using homologous recombination targeting M. musculus Hist1h1c, (knockout) using homologous recombination targeting M. musculus Hist1h1d, (knockout) using homologous recombination targeting M. musculus Hist1h1e
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- DNase-seq on mouse ES-WW6 F1KO
- Nucleic acid type
- DNA
- Fragmentation methods
- see document
Attribution
ENCODE Mouse Project
- Lab
- John Stamatoyannopoulos, UW
- Award
- RC2HG005654 (John Stamatoyannopoulos, UW)
- Project
- ENCODE
- External resources
- Date submitted
- May 6, 2011
- Date released
- April 17, 2013
- Annotation (gkmsvm-model)
- Registry of cCREs
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Library |
---|---|---|---|---|---|
1 | 1 | Mus musculus strain ~20% C57/B6J (MGI.D:C57BL), ~75% 129/Sv (MGI.D:129) and ~5% SJL strains (MGI.D:SJL) WW6 cell line genetically modified (knockout) using homologous recombination targeting M. musculus Hist1h1c, genetically modified (knockout) using homologous recombination targeting M. musculus Hist1h1d, genetically modified (knockout) using homologous recombination targeting M. musculus Hist1h1e | ENCBS121ENC | ENCGM993OPN, ENCGM387XZX, ENCGM245FBV | ENCLB144XPP |
2 | 1 | Mus musculus strain ~20% C57/B6J (MGI.D:C57BL), ~75% 129/Sv (MGI.D:129) and ~5% SJL strains (MGI.D:SJL) WW6 cell line genetically modified (knockout) using homologous recombination targeting M. musculus Hist1h1c, genetically modified (knockout) using homologous recombination targeting M. musculus Hist1h1d, genetically modified (knockout) using homologous recombination targeting M. musculus Hist1h1e | ENCBS134ZWP | ENCGM993OPN, ENCGM387XZX, ENCGM245FBV | ENCLB177WRU |