Experiment summary for ENCSR000CLO
doi:10.17989/ENCSR000CLO
Summary
- Status
- released
- Assay
- polyA plus RNA-seq
- Biosample summary
- Mus musculus strain C57BL/6J liver tissue male adult (2 months)
- Biosample Type
- tissue
- Replication type
- isogenic
- Description
- RNA-seq on 8 week adult mouse liver
- Nucleic acid type
- polyadenylated mRNA
- Size range
- >200
- Fragmentation methods
- see document
- Strand specificity
- Strand-specific (forward)
- Spike-ins datasets
- ENCSR156CIL
Attribution
ENCODE Mouse Project
- Lab
- John Stamatoyannopoulos, UW
- Award
- RC2HG005654 (John Stamatoyannopoulos, UW)
- Project
- ENCODE
- External resources
- Date submitted
- March 21, 2012
- Date released
- July 10, 2012
- Submitter comment
- The preferred default files of this dataset were selected based on the read counts of the fastq files because no uniform processing pipeline is available for datasets sequenced using the Applied Biosystems SOLiD platform.
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
---|---|---|---|---|
3 | 1 | Mus musculus strain C57BL/6J male adult (2 months) liver tissue | ENCBS185PFE | ENCLB122EDV |
4 | 1 | Mus musculus strain C57BL/6J male adult (2 months) liver tissue | ENCBS203ENC | ENCLB431UYV |
2 | 1 | Mus musculus strain C57BL/6J male adult (2 months) liver tissue | ENCBS203ENC | ENCLB253KLM |
1 | 1 | Mus musculus strain C57BL/6J male adult (2 months) liver tissue | ENCBS203ENC | ENCLB527XJD |