Experiment summary for ENCSR000CJU
doi:10.17989/ENCSR000CJU
Summary
- Status
- released
- Assay
- CAGE
- Biosample summary
- Homo sapiens SK-N-SH treated with 6 μM all-trans-retinoic acid for 48 hours
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- CAGE on human SK-N-SH treated with 6uM retinoic acid for 48 hours, greater than 200nt PolyA+ RNA
- Treatments
- 6 μM all-trans-retinoic acid (CHEBI:15367) for 48 hours
- Nucleic acid type
- polyadenylated mRNA
- Size range
- >200
- Fragmentation methods
- see document
- Strand specificity
- Strand-specific (forward)
- Platform
- Illumina Genome Analyzer IIx
- Controls
Attribution
ENCODE2 project
- Lab
- Piero Carninci, RIKEN
- Award
- U54HG004557 (Thomas Gingeras, CSHL)
- Project
- ENCODE
- External resources
- Date submitted
- December 22, 2011
- Date released
- December 22, 2011
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 1 | Homo sapiens SK-N-SH cell line treated with 6 μM all-trans-retinoic acid for 48 hours | ENCBS366ENC | ENCLB555AFC |
| 2 | 1 | Homo sapiens SK-N-SH cell line treated with 6 μM all-trans-retinoic acid for 48 hours | ENCBS367ENC | ENCLB555AHY |