Experiment summary for ENCSR000BYB
doi:10.17989/ENCSR000BYB
Summary
- Status
- released
- Assay
- polyA plus RNA-seq
- Biosample summary
- Homo sapiens Ishikawa treated with 10 nM estradiol for 4 hours
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- RNA-seq on ECC-1 greater than 200bp polyA+ treated with estradiol at 10nM for 4 hours. Note- This experiment previously referred to its biosample as ECC-1, however it has been found that all currently available ECC-1 are actually Ishikawa cells.
- Treatments
- 10 nM estradiol (CHEBI:23965) for 4 hours
- Nucleic acid type
- polyadenylated mRNA
- Size range
- >200
- Fragmentation methods
- see document
- Strand specificity
- unstranded
- Spike-ins datasets
- ENCSR466YMU
- Platform
- Illumina Genome Analyzer IIx
Attribution
ENCODE2 project
- Lab
- Richard Myers, HAIB
- Award
- U54HG004576 (Richard Myers, HAIB)
- Project
- ENCODE
- External resources
- GEO-obsolete:GSM923427
- UCSC-ENCODE-hg19:wgEncodeEH001240
- GEO:GSE93439
- References
- Date submitted
- January 21, 2012
- Date released
- February 23, 2012
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
---|---|---|---|---|
1 | 1 | Homo sapiens Ishikawa cell line treated with 10 nM estradiol for 4 hours | ENCBS222DWG | ENCLB723FZR |
2 | 1 | Homo sapiens Ishikawa cell line treated with 10 nM estradiol for 4 hours | ENCBS222DWG | ENCLB990TKY |