Experiment summary for ENCSR000BXZ
doi:10.17989/ENCSR000BXZ
Summary
- Status
- released
- Assay
- polyA plus RNA-seq
- Biosample summary
- Homo sapiens Ishikawa treated with 100 nM bisphenol A for 4 hours
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- RNA-seq on ECC-1 greater than 200bp polyA+ treated with bisphenol A at 100nM for 4 hours. Note- This experiment previously referred to its biosample as ECC-1, however it has been found that all currently available ECC-1 are actually Ishikawa cells.
- Treatments
- 100 nM bisphenol A (CHEBI:33216) for 4 hours
- Nucleic acid type
- polyadenylated mRNA
- Size range
- >200
- Fragmentation methods
- see document
- Strand specificity
- unstranded
- Spike-ins datasets
- ENCSR466YMU
- Platform
- Illumina Genome Analyzer IIx
Attribution
ENCODE2 project
- Lab
- Richard Myers, HAIB
- Award
- U54HG004576 (Richard Myers, HAIB)
- Project
- ENCODE
- External resources
- GEO-obsolete:GSM923422
- UCSC-ENCODE-hg19:wgEncodeEH001238
- GEO:GSE93437
- References
- Date submitted
- January 21, 2012
- Date released
- February 23, 2012
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 2 | 1 | Homo sapiens Ishikawa cell line treated with 100 nM bisphenol A for 4 hours | ENCBS758FSP | ENCLB704HWG |
| 1 | 1 | Homo sapiens Ishikawa cell line treated with 100 nM bisphenol A for 4 hours | ENCBS758FSP | ENCLB125QNB |