Experiment summary for ENCSR000BXW
doi:10.17989/ENCSR000BXW
Summary
- Status
- released
- Assay
- polyA plus RNA-seq
- Biosample summary
- Homo sapiens A549 treated with 0.02% ethanol for 1 hour
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- RNA-seq on A549 greater than 200bp polyA+ treated with ethanol at 0.02%
- Treatments
- 0.02 percent ethanol (CHEBI:16236) for 1 hour
- Nucleic acid type
- polyadenylated mRNA
- Size range
- >200
- Fragmentation methods
- see document
- Strand specificity
- unstranded
- Spike-ins datasets
- ENCSR466YMU
- Platform
- Illumina Genome Analyzer IIx
Attribution
ENCODE2 project
- Lab
- Richard Myers, HAIB
- Award
- U54HG004576 (Richard Myers, HAIB)
- Project
- ENCODE
- External resources
- References
- Date submitted
- January 21, 2012
- Date released
- February 23, 2012
- Reference Epigenome
- ENCSR797CXN
- Submitter comment
- Fastq file ENCFF000MQG contains reads of mixed lengths. Read lengths followed by respective number of reads: (36, 26420294), (76, 21164680). The data also had a very low mapping percentage, and cannot be fully processed on ENCODE's uniform processing pipelines.
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 2 | 1 | Homo sapiens A549 cell line treated with 0.02% ethanol for 1 hour | ENCBS423ENC | ENCLB398BUX |
| 4 | 1 | Homo sapiens A549 cell line treated with 0.02% ethanol for 1 hour | ENCBS423ENC | ENCLB964FCV |
| 3 | 1 | Homo sapiens A549 cell line treated with 0.02% ethanol for 1 hour | ENCBS423ENC | ENCLB372LWW |
| 1 | 1 | Homo sapiens A549 cell line treated with 0.02% ethanol for 1 hour | ENCBS423ENC | ENCLB015BBF |