Experiment summary for ENCSR000BXV
doi:10.17989/ENCSR000BXV
Summary
- Status
- released
- Assay
- polyA plus RNA-seq
- Biosample summary
- Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 1 hour
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- RNA-seq on A549 greater than 200bp polyA+ treated with dexamethasone at 100nM
- Treatments
- 100 nM dexamethasone (CHEBI:41879) for 1 hour
- Nucleic acid type
- polyadenylated mRNA
- Size range
- >200
- Fragmentation methods
- see document
- Strand specificity
- unstranded
- Spike-ins datasets
- ENCSR466YMU
- Platform
- Illumina Genome Analyzer IIx
Attribution
ENCODE2 project
- Lab
- Richard Myers, HAIB
- Award
- U54HG004576 (Richard Myers, HAIB)
- Project
- ENCODE
- External resources
- Date submitted
- January 21, 2012
- Date released
- February 23, 2012
- Treatment Concentration Series
- ENCSR457QRZ
- Reference Epigenome
- ENCSR568MFY
- Submitter comment
- The data had a very low mapping percentage and cannot be fully processed on ENCODE's unform processing pipelines.
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 2 | 1 | Homo sapiens A549 cell line treated with 100 nM dexamethasone (agonist) for 1 hour | ENCBS165AAA | ENCLB388ZIP |
| 1 | 1 | Homo sapiens A549 cell line treated with 100 nM dexamethasone (agonist) for 1 hour | ENCBS165AAA | ENCLB418UBL |