1. Experiments
  2. ChIP-seq
  3. Homo sapiens
  4. SK-N-SH

Experiment summary for ENCSR000BJJ

doi:10.17989/ENCSR000BJJ

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
REST
Biosample summary
Homo sapiens SK-N-SH
Biosample Type
cell line
Replication type
isogenic
Description
REST ChIP-seq protocol PCR2x on human SK-N-SH
Nucleic acid type
DNA
Fragmentation methods
see document
Controls

Attribution

ENCODE2 project
Lab
Richard Myers, HAIB
Award
U54HG004576 (Richard Myers, HAIB)
Project
ENCODE
Date submitted
July 18, 2011
Date released
July 18, 2011
Annotation (gkmsvm-model)
Annotation (BPNet-model)
Submitter comment
Fastq file ENCFF000RAL contains reads of mixed lengths. Read lengths followed by respective number of reads: (32, 3972256), (36, 31246798).
Tags
Search for all Experiment with internal tag RegulomeDB_1_0Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag RegulomeDB_2_1Search for all Experiment with internal tag ENCYCLOPEDIAv2Search for all Experiment with internal tag ENCYCLOPEDIAv1Search for all Experiment with internal tag RegulomeDB_2_2

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Antibody
Library
21Homo sapiens SK-N-SH cell lineENCBS428ENCENCAB000AJKENCLB559JWX
11Homo sapiens SK-N-SH cell lineENCBS428ENCENCAB000AJKENCLB559KED

Files

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Output type
Replicates

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