Experiment summary for ENCSR000BFI

doi:10.17989/ENCSR000BFI

Summary

Status
released
Assay
transcription profiling by array assay (RNA microarray)
Biosample summary
Homo sapiens MCF-7 expressing RNAi targeting H. sapiens CTCF
Biosample Type
cell line
Replication type
isogenic
Description
RNA array on human MCF-7 treated with CTCF shRNA knockdown
Nucleic acid type
RNA
Fragmentation methods
see document
Strand specificity
unstranded

Attribution

ENCODE2 project
Lab
Gregory Crawford, Duke
Award
U54HG004563 (Gregory Crawford, Duke)
Project
ENCODE
Date submitted
April 4, 2012
Date released
April 4, 2012

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Library
21Homo sapiens MCF-7 cell line expressing RNAi targeting H. sapiens CTCFENCBS094ENCENCGM116LDXENCLB886WAQ
31Homo sapiens MCF-7 cell line expressing RNAi targeting H. sapiens CTCFENCBS094ENCENCGM116LDXENCLB020IHI
11Homo sapiens MCF-7 cell line expressing RNAi targeting H. sapiens CTCFENCBS094ENCENCGM116LDXENCLB933DKT