Experiment summary for ENCSR000BFI
doi:10.17989/ENCSR000BFI
Summary
- Status
- released
- Assay
- transcription profiling by array assay (RNA microarray)
- Biosample summary
- Homo sapiens MCF-7 expressing RNAi targeting H. sapiens CTCF
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- RNA array on human MCF-7 treated with CTCF shRNA knockdown
- Nucleic acid type
- RNA
- Fragmentation methods
- see document
- Strand specificity
- unstranded
Attribution
ENCODE2 project
- Lab
- Gregory Crawford, Duke
- Award
- U54HG004563 (Gregory Crawford, Duke)
- Project
- ENCODE
- External resources
- Date submitted
- April 4, 2012
- Date released
- April 4, 2012
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Library |
---|---|---|---|---|---|
2 | 1 | Homo sapiens MCF-7 cell line expressing RNAi targeting H. sapiens CTCF | ENCBS094ENC | ENCGM116LDX | ENCLB886WAQ |
3 | 1 | Homo sapiens MCF-7 cell line expressing RNAi targeting H. sapiens CTCF | ENCBS094ENC | ENCGM116LDX | ENCLB020IHI |
1 | 1 | Homo sapiens MCF-7 cell line expressing RNAi targeting H. sapiens CTCF | ENCBS094ENC | ENCGM116LDX | ENCLB933DKT |