1. Experiments
  2. ChIP-seq
  3. Homo sapiens
  4. astrocyte

Experiment summary for ENCSR000AOO

doi:10.17989/ENCSR000AOO

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
CTCF
Biosample summary
Homo sapiens astrocyte
Biosample Type
primary cell
Replication type
isogenic
Description
CTCF ChIP-seq on human NH-A
Nucleic acid type
DNA
Fragmentation methods
see document
Controls

Attribution

ENCODE2 project
Lab
Bradley Bernstein, Broad
Award
U54HG004570 (Bradley Bernstein, Broad)
Project
ENCODE
Date submitted
November 16, 2010
Date released
February 10, 2011
Reference Epigenome
ENCSR362MQF 
Annotation (gkmsvm-model)
Annotation (BPNet-model)
Submitter comment
This experiment requires new peak calling due to new data from its control, ENCSR000AOP.
Tags
Search for all Experiment with internal tag RegulomeDB_1_0Search for all Experiment with internal tag ccre_inputv2Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag RegulomeDB_2_1Search for all Experiment with internal tag ccre_inputv1Search for all Experiment with internal tag ENCYCLOPEDIAv2Search for all Experiment with internal tag ENCYCLOPEDIAv1Search for all Experiment with internal tag RegulomeDB_2_2

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Antibody
Library
11Homo sapiens astrocyte primary cellENCBS020ENCENCAB000AXXENCLB695AFV
21Homo sapiens astrocyte primary cellENCBS096LWSENCAB000AXXENCLB695AFW

Files

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