1. Experiments
  2. ChIP-seq
  3. Homo sapiens
  4. endothelial cell of umbilical vein

Experiment summary for ENCSR000ALA

doi:10.17989/ENCSR000ALA

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
CTCF
Biosample summary
Homo sapiens endothelial cell of umbilical vein newborn
Biosample Type
primary cell
Replication type
unreplicated
Description
CTCF ChIP-seq on human endothelial cell of umbilical vein
Nucleic acid type
DNA
Fragmentation methods
see document
Controls

Attribution

ENCODE2 project
Lab
Bradley Bernstein, Broad
Award
U54HG004570 (Bradley Bernstein, Broad)
Project
ENCODE
Date submitted
November 16, 2010
Date released
February 10, 2011
Annotation (gkmsvm-model)
Annotation (physical modeling)
Annotation (BPNet-model)
Submitter comment
As of August 2022, the donors associated with the biosamples in this dataset were changed from ENCDO551FXN to ENCDO466MPW and ENCDO560UMK. See PMID:32728101.
Tags
Search for all Experiment with internal tag RegulomeDB_1_0Search for all Experiment with internal tag ccre_inputv2Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag RegulomeDB_2_1Search for all Experiment with internal tag ccre_inputv1Search for all Experiment with internal tag ENCYCLOPEDIAv2Search for all Experiment with internal tag ENCYCLOPEDIAv1Search for all Experiment with internal tag RegulomeDB_2_2

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Antibody
Library
13Homo sapiens newborn endothelial of umbilical vein primary cellENCBS717AAAENCAB000AXYENCLB695ABJ
11Homo sapiens newborn endothelial of umbilical vein primary cellENCBS717AAAENCAB000AXYENCLB695ABI
12Homo sapiens newborn endothelial of umbilical vein primary cellENCBS717AAAENCAB000AXYENCLB695ABK

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