Experiment summary for ENCSR000AEW

  • Status: released

Summary

Assay
RNA-seq (total RNA-seq)
Biosample summary
Homo sapiens cerebellum female fetal (19 weeks) and female fetal (37 weeks)
Biosample Type
tissue
Replication type
anisogenic
Description
The libraries contained in this experiment come from human fetal cerebellum tissue from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
Nucleic acid type
RNA
Depleted in
rRNA
Size range
>200
Lysis method
see document
Extraction method
see document
Fragmentation method
see document
Size selection method
see document
Strand specificity
Strand-specific
Spike-ins datasets
ENCSR470JZL
Platform
HiSeq 2000

Attribution

ENCODE3 project
Lab
Thomas Gingeras, CSHL
Award
U54HG007004 (Thomas Gingeras, CSHL)
Project
ENCODE
External resources
Date released
2014-06-30
Tags
ENCYCLOPEDIAv4 tag

Anisogenic replicates

Anisogenic replicateTechnical replicateSummaryBiosampleLibrary
11cerebellum tissue female fetal (37 weeks)ENCBS049RNAENCLB177ZZZ
21cerebellum tissue female fetal (19 weeks)ENCBS050RNAENCLB178ZZZ

Documents

data sheet
Description: Ambion spike-in concentrations and subgroups for mix 1 and mix 2
Submitted by
Carrie Davis
Lab
Thomas Gingeras, CSHL
data sheet
Description: BioChain Human fetal cerebellum B608269 data sheet
Submitted by
Carrie Davis
Lab
Thomas Gingeras, CSHL
data sheet
Description: BioChain Human fetal cerebellum B109018 data sheet
Submitted by
Carrie Davis
Lab
Thomas Gingeras, CSHL
general protocol
Description: Specific protocol for library ENCLB178ZZZ
Submitted by
Carrie Davis
Lab
Thomas Gingeras, CSHL
general protocol
Description: Specific protocol for library ENCLB177ZZZ
Submitted by
Carrie Davis
Lab
Thomas Gingeras, CSHL
pipeline protocol
Description excerpt: Long RNA-seq pipeline: Includes overview, references, and spike-ins information about the pipeline
Description
Long RNA-seq pipeline: Includes overview, references, and spike-ins information about the pipeline
Submitted by
Kathrina Onate
Lab
J. Michael Cherry, Stanford