Experiment summary for ENCSR000AES
doi:10.17989/ENCSR000AES
Summary
- Status
- released
- Assay
- small RNA-seq
- Biosample summary
- Homo sapiens K562
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- The libraries contained in this experiment come from independent growths of cell line K562. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size. These data were collected as part of the RNA Evaluation Study.
- Treatments
- Tobacco Acid Pyrophosphatase for 1 hour
- Nucleic acid type
- RNA
- Depleted in
- rRNA
- Size range
- <200
- Fragmentation methods
- see document
- Strand specificity
- Strand-specific (forward)
- Platform
- Illumina HiSeq 2000
Attribution
ENCODE3 project
- Lab
- Thomas Gingeras, CSHL
- Award
- U54HG007004 (Thomas Gingeras, CSHL)
- Project
- ENCODE
- External resources
- References
- Aliases
- encode:evaluation_set_K562_smRNA_Gingeras
- Date submitted
- June 13, 2013
- Date released
- June 30, 2014
- Reference Epigenome
- ENCSR612NLL
- Annotation (physical modeling)
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 2 | 1 | Homo sapiens K562 cell line | ENCBS088RNA | ENCLB068ZZZ |
| 1 | 1 | Homo sapiens K562 cell line | ENCBS087RNA | ENCLB067ZZZ |