Experiment summary for ENCSR000AEF

doi:10.17989/ENCSR000AEF

Summary

Status
released
Assay
polyA plus RNA-seq
Biosample summary
Homo sapiens GM12878
Biosample Type
cell line
Replication type
isogenic
Description
RNA Evaluation Gm12878 Long Poly-A+ from Graveley
Nucleic acid type
polyadenylated mRNA
RNA integrity number
9.6
Size range
>200
Extraction method
Trizol
Fragmentation methods
chemical (Illumina TruSeq)
Size selection method
SPRI beads
Strand specificity
Strand-specific (reverse)
Spike-ins datasets
ENCSR449DXG

Attribution

ENCODE3 project
Lab
Brenton Graveley, UConn
Award
U54HG007005 (Brenton Graveley, UConn)
Project
ENCODE
External resources
Aliases
encode:evaluation_set_GM12878_polyA_Graveley
Date submitted
May 19, 2013
Date released
June 30, 2014
Tags
Visit collection page for ENCORESearch for all Experiment with internal tag ENCYCLOPEDIAv1Search for all Experiment with internal tag ENCYCLOPEDIAv2

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Library
21Homo sapiens GM12878 cell lineENCBS090RNAENCLB042ZZZ
11Homo sapiens GM12878 cell lineENCBS089RNAENCLB041ZZZ