Experiment summary for ENCSR000EPZ
doi:10.17989/ENCSR000EPZ
Summary
- Status
- released
- Assay
- DNase-seq
- Biosample summary
- Homo sapiens SK-N-SH treated with 6 μM all-trans-retinoic acid for 48 hours
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- DNase-seq and DGF on human SK-N-SH treated with 6uM retinoic acid for 48 hours
- Treatments
- 6 μM all-trans-retinoic acid (CHEBI:15367) for 48 hours
- Nucleic acid type
- DNA
- Fragmentation methods
- see document
Attribution
ENCODE2 project
- Lab
- John Stamatoyannopoulos, UW
- Award
- U54HG004592 (John Stamatoyannopoulos, UW)
- Project
- ENCODE
- References
- Date submitted
- December 14, 2010
- Date released
- December 14, 2010
- Reference Epigenome
- ENCSR192FFL
- Annotation (gkmsvm-model)
- Annotation (ChromBPNet-model)
- Tags
- Registry of cCREs
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 2 | 1 | Homo sapiens SK-N-SH cell line treated with 6 μM all-trans-retinoic acid for 48 hours | ENCBS799ICU | ENCLB585ZZZ |
| 1 | 1 | Homo sapiens SK-N-SH cell line treated with 6 μM all-trans-retinoic acid for 48 hours | ENCBS404ENC | ENCLB586ZZZ |