1. Experiments
  2. DNase-seq
  3. Homo sapiens
  4. SK-N-MC

Experiment summary for ENCSR000EPY

doi:10.17989/ENCSR000EPY

Summary

Status
released
Assay
DNase-seq
Biosample summary
Homo sapiens SK-N-MC
Biosample Type
cell line
Replication type
isogenic
Description
DNase-seq on human SK-N-MC
Nucleic acid type
DNA
Fragmentation methods
see document

Attribution

ENCODE2 project
Lab
John Stamatoyannopoulos, UW
Award
U54HG004592 (John Stamatoyannopoulos, UW)
Project
ENCODE
Date submitted
January 11, 2011
Date released
May 4, 2011
Reference Epigenome
ENCSR394KIB 
Annotation (gkmsvm-model)
Annotation (ChromBPNet-model)
Submitter comment
This assay uses SK-N-MC cell line which was previously described as a neuroepithelioma (ATCC HTB-10). However recent evidence reveals it is Ewing's Sarcoma (www.ncbi.nlm.nih.gov/pubmed/15548687, www.ncbi.nlm.nih.gov/biosample/3151999, www.ncbi.nlm.nih.gov/pubmed/25453903).
Tags
Search for all Experiment with internal tag RegulomeDB_1_0Search for all Experiment with internal tag ccre_inputv2Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag RegulomeDB_2_1Search for all Experiment with internal tag ccre_inputv1Search for all Experiment with internal tag ENCYCLOPEDIAv2Search for all Experiment with internal tag ENCYCLOPEDIAv1Search for all Experiment with internal tag RegulomeDB_2_2

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Library
11Homo sapiens SK-N-MC cell lineENCBS400ENCENCLB583ZZZ
21Homo sapiens SK-N-MC cell lineENCBS366AETENCLB584ZZZ

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