1. Experiments
  2. DNase-seq
  3. Homo sapiens
  4. GM06990

Experiment summary for ENCSR000EMQ

doi:10.17989/ENCSR000EMQ

Summary

Status
released
Assay
DNase-seq
Biosample summary
Homo sapiens GM06990
Biosample Type
cell line
Replication type
isogenic
Description
DNase-seq and DGF on human GM06990
Nucleic acid type
DNA
Fragmentation methods
see document

Attribution

ENCODE2 project
Lab
John Stamatoyannopoulos, UW
Award
U54HG004592 (John Stamatoyannopoulos, UW)
Project
ENCODE
Date submitted
April 7, 2011
Date released
April 7, 2011
Reference Epigenome
ENCSR514SGN 
Annotation (gkmsvm-model)
Annotation (ChromBPNet-model)
Submitter comment
Fastq file ENCFF001CTW contains reads of mixed lengths. Read lengths followed by respective number of reads: (28, 20892185), (36, 50463143)
Tags
Search for all Experiment with internal tag RegulomeDB_1_0Search for all Experiment with internal tag ccre_inputv2Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag RegulomeDB_2_1Search for all Experiment with internal tag ccre_inputv1Search for all Experiment with internal tag ENCYCLOPEDIAv2Search for all Experiment with internal tag ENCYCLOPEDIAv1Search for all Experiment with internal tag RegulomeDB_2_2

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Library
21Homo sapiens GM06990 cell lineENCBS414HDGENCLB436ZZZ
11Homo sapiens GM06990 cell lineENCBS057ENCENCLB435ZZZ

Files

Filter files

File format
Output type
Replicates

No files to display.