ENCODE Software

Software implemented and developed by the DCC (Data Coordination Center) for the Portal
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  • VALIS — source
    High performance WebGL genome visualization
    Software
    released
  • encode_utils — source
    Tools that are useful to any ENCODE Consortium submitting group, as well as the general community working with ENCODE data. Library and scripts are coded in Python.
    Software
    released
  • Check Files — source
    Files are checked to see if the MD5 sum (both for gzipped and ungzipped) is identical to the submitted metadata, as well as run through the validateFiles program from Jim Kent's source utilities.
    Software
    released
  • SnoVault — source
    The ENCODE DCC has created a general purpose software system, known as SnoVault, that supports metadata and file submission, a database used for metadata storage, web pages for displaying the metadata and a robust API for querying the metadata.
    Software type: database
    Software
    released
  • encodeD — source
    Metadata database for ENCODE project
    Software type: database
    Software
    released