ENCODE Software
Software tools implemented and developed by the consortium for computational analysis
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- sQTLseekeR — sourcesQTLseekeR is a package to detect splicing QTLs (sQTLs), which are variants associated with change in the splicing pattern of a gene. In sQTLSeeker, splicing patterns are modeled by the relative expression of the transcripts of a gene. The most recent version of sQTLseekeR can be employed to detect genetic variant associated to any multivariate phenotypeSoftware type: variant annotation
- vcf2diploid — sourceCreates phased diploid genomes variants from a vcf file by integrating variants to a reference genome.Software type: variant annotation