ENCODE Software
All software used or developed by the ENCODE Consortium
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- mountainClimber — sourcemountainClimber is a method for de novo identification of alternative transcript start sites and polyadenylation sites in RNA-seq dataSoftware type: transcript identification
- lrna-quantification — sourceQuantification of annotation results by RSEM for bulk-RNA-seq ENCODE uniform processing pipeline.Software type: transcript identification
- Flux Capacitor — sourceThe exonic structure of two spliceforms. FluxCapacitor recontructs abundances of known transcript forms from RNAseq data (PMCID: PMC3836232).Software type: transcript identification