ENCODE Software
All software used or developed by the ENCODE Consortium
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- eCLIP core pipeline — sourceCustom software developed by Yeo lab for use in the eCLIP pipeline.Software type: other
- Merge Peaks — sourceCWL-defined pipeline for using IDR to produce a set of peaks given two replicate eCLIP peaks
- Peak Input Normalization Wrapper — sourceNormalizes eCLIP peaks using peaks from a control experiment.
- barcode_collapse_pe.pyread in a .bam file where the first 9 nt of the read name are the barcode and merge reads mapped to the same position that have the same barcode