ENCODE Software
All software used or developed by the ENCODE Consortium
Showing 11 of 11 results
Number of displayed results:
- SwanSwan is a Python library designed for the analysis and visualization of transcriptomes.Software type: other
- CerberusCerberus software for long-read RNA-seq analysisSoftware type: other
- Generate SIRV GTFs — sourceSet of scripts used to generate GTFs that include SIRV sequences for use with the ENCODE long read RNA-seq pipeline.Software type: other
- TALON — sourceTALON is a program for identifying, quantifying, and filtering known and novel genes/isoforms in long read transcriptome data sets. It is technology-agnostic in that it works from mapped SAM files, allowing data from different sequencing platforms (i.e. PacBio and Oxford Nanopore) to be analyzed side by side.
- TranscriptClean — sourceTranscriptClean is a tool for variant-aware, reference-based error correction of long reads.
- nanostringToBed — sourceThis is a custom script to convert the results of Nanostring Nsolver from mirbase identifiers to genomic coordinates in BED and bigBED format.Software type: file format conversion