Accession Description ?Coverage ?# Proteins ?# Unique Peptides ?# Peptides ?# PSMs Score A2 Coverage A2 # Peptides A2 # PSM A2 Score B2 Coverage B2 # Peptides B2 # PSM B2 # AAs MW [kDa] calc. pI P35908 "Keratin, type II cytoskeletal 2 epidermal OS=Homo sapiens GN=KRT2 PE=1 SV=2 - [K22E_HUMAN]" 77.78 4 36 44 676 1323.12 74.65 41 405 879.54 57.59 30 271 639 65.4 8.00 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 79 6.18 0.00 0 3 4 3 800.34424 2399.01816 -0.17 49.77 4735 4735 MS2 51/116 Linfeng_20130201_rIgG_5.raw High GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 87 6.02 0.00 0 3 8 3 800.34491 2399.02018 0.66 49.91 4722 4722 MS2 55/116 Linfeng_20130201_rIgG_9.raw High GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 86 6.00 0.00 0 4 15 3 800.34528 2399.02127 1.12 49.65 4648 4648 MS2 58/116 Linfeng_20130201_rIgG_2.raw High GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 77 5.82 0.00 0 1 11 3 800.34375 2399.01670 -0.79 49.81 4687 4687 MS2 56/116 Linfeng_20130201_rIgG_3.raw High GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 85 5.65 0.00 0 12 13 3 800.34552 2399.02201 1.43 49.87 4703 4703 MS2 52/116 Linfeng_20130201_rIgG_4.raw High GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 87 5.57 0.00 0 8 15 3 800.34485 2399.01999 0.59 49.56 4736 4736 MS2 55/116 Linfeng_20130201_rIgG_1.raw High GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 80 5.51 0.00 0 6 13 3 800.34454 2399.01908 0.21 49.98 4237 4237 MS2 47/116 Linfeng_20130204_CTCF_2.raw High GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 80 5.40 0.00 0 5 26 3 800.34454 2399.01908 0.21 50.00 4802 4802 MS2 48/116 Linfeng_20130201_rIgG_7.raw High GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 80 5.38 0.00 0 3 11 3 800.34454 2399.01908 0.21 49.98 4762 4762 MS2 54/116 Linfeng_20130201_rIgG_6.raw High GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 81 5.31 0.00 0 0 33 2 1200.01770 2399.02812 3.98 50.12 3937 3937 MS2 35/58 Linfeng_20130204_CTCF_6.raw High GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 87 5.26 0.00 0 0 17 3 800.34650 2399.02494 2.65 50.11 3936 3936 MS2 44/116 Linfeng_20130204_CTCF_6.raw High GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 85 5.22 0.00 0 11 31 3 800.34552 2399.02201 1.43 49.86 4710 4710 MS2 55/116 Linfeng_20130201_rIgG_10.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 400 5.19 0.00 0 29 50 2 919.96210 1838.91692 1.31 48.88 3801 3801 MS2 26/42 Linfeng_20130204_CTCF_6.raw High MSGDLSSNVTVSVTSSTISSNVASK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 462 5.17 0.00 0 0 28 3 820.07245 2458.20279 2.01 44.29 3320 3320 MS2 28/96 Linfeng_20130204_CTCF_6.raw High GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 85 5.07 0.00 0 18 45 3 800.34558 2399.02219 1.50 49.68 4225 4225 MS2 42/116 Linfeng_20130204_CTCF_1.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 419 5.04 0.00 0 22 50 2 919.96222 1838.91716 1.44 49.35 4051 4051 MS2 28/42 Linfeng_20130204_CTCF_10.raw High mSGDLSSNVTVSVTSSTISSNVASK Unambiguous 1 1 P35908 M1(Oxidation) CID 1.0000 0.0000 1 1 467 5.03 0.00 0 0 17 3 825.40344 2474.19577 1.22 42.13 3820 3820 MS2 36/96 Linfeng_20130201_rIgG_2.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 409 5.03 0.00 0 6 16 2 919.96100 1838.91472 0.11 48.73 4088 4088 MS2 29/42 Linfeng_20130204_CTCF_2.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 410 5.01 0.00 0 8 13 2 919.96008 1838.91289 -0.88 48.56 4515 4515 MS2 30/42 Linfeng_20130201_rIgG_2.raw High mSGDLSSNVTVSVTSSTISSNVASK Unambiguous 1 1 P35908 M1(Oxidation) CID 1.0000 0.0000 1 1 455 4.97 0.00 0 0 26 3 825.40271 2474.19358 0.33 42.20 3840 3840 MS2 39/96 Linfeng_20130201_rIgG_3.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 420 4.93 0.00 0 6 31 2 919.96136 1838.91545 0.51 48.76 4609 4609 MS2 31/42 Linfeng_20130201_rIgG_6.raw High GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 79 4.93 0.00 0 3 12 3 800.34448 2399.01889 0.13 50.15 4177 4177 MS2 47/116 Linfeng_20130204_CTCF_7.raw High mSGDLSSNVTVSVTSSTISSNVASK Unambiguous 1 1 P35908 M1(Oxidation) CID 1.0000 0.0000 1 1 439 4.92 0.00 0 0 35 3 825.40192 2474.19120 -0.63 42.30 3852 3852 MS2 34/96 Linfeng_20130201_rIgG_10.raw High mSGDLSSNVTVSVTSSTISSNVASK Unambiguous 1 1 P35908 M1(Oxidation) CID 1.0000 0.0000 1 1 444 4.90 0.00 0 0 50 3 825.40302 2474.19449 0.70 42.09 3425 3425 MS2 27/96 Linfeng_20130204_CTCF_1.raw High mSGDLSSNVTVSVTSSTISSNVASK Unambiguous 1 1 P35908 M1(Oxidation) CID 1.0000 0.0000 1 1 452 4.87 0.00 0 5 47 3 825.40289 2474.19413 0.55 42.04 3851 3851 MS2 39/96 Linfeng_20130201_rIgG_1.raw High MSGDLSSNVTVSVTSSTISSNVASK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 467 4.78 0.00 0 0 39 3 820.07294 2458.20426 2.61 44.46 3527 3527 MS2 28/96 Linfeng_20130204_CTCF_7.raw High GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 81 4.74 0.00 0 0 50 2 1200.01697 2399.02666 3.37 50.26 4215 4215 MS2 35/58 Linfeng_20130204_CTCF_9.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 406 4.72 0.00 0 13 27 2 919.96130 1838.91533 0.45 48.64 4549 4549 MS2 28/42 Linfeng_20130201_rIgG_4.raw High mSGDLSSNVTVSVTSSTISSNVASK Unambiguous 1 1 P35908 M1(Oxidation) CID 1.0000 0.0000 1 1 357 4.69 0.00 0 0 50 2 1237.60010 2474.19292 0.07 42.40 3410 3410 MS2 26/48 Linfeng_20130204_CTCF_2.raw High VLYDAEISQIHQSVTDTNVILSmDNSR Unambiguous 1 1 P35908 M23(Oxidation) CID 1.0000 0.0000 1 1 426 4.68 0.00 0 2 4 3 1022.16602 3064.48349 -1.89 52.32 5043 5043 MS2 36/104 Linfeng_20130201_rIgG_5.raw High NKLNDLEEALQQAK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 495 4.66 0.00 1 10 7 3 538.62103 1613.84854 -0.53 47.05 4421 4421 MS2 30/52 Linfeng_20130201_rIgG_1.raw High mSGDLSSNVTVSVTSSTISSNVASK Unambiguous 1 1 P35908 M1(Oxidation) CID 1.0000 0.0000 1 1 457 4.63 0.00 0 4 27 3 825.40222 2474.19211 -0.26 42.20 3829 3829 MS2 38/96 Linfeng_20130201_rIgG_4.raw High GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 58 4.62 0.00 0 0 6 2 1200.01245 2399.01763 -0.40 49.81 4740 4740 MS2 34/58 Linfeng_20130201_rIgG_5.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 395 4.61 0.00 0 37 50 2 919.95990 1838.91252 -1.08 48.43 4085 4085 MS2 27/42 Linfeng_20130204_CTCF_1.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 410 4.61 0.00 0 2 14 2 919.95886 1838.91045 -2.21 48.84 4104 4104 MS2 28/42 Linfeng_20130204_CTCF_8.raw High SKEEAEALYHSKYEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 493 4.61 0.00 2 0 50 3 856.09784 2566.27896 0.20 39.64 3582 3582 MS2 31/84 Linfeng_20130201_rIgG_9.raw High mSGDLSSNVTVSVTSSTISSNVASK Unambiguous 1 1 P35908 M1(Oxidation) CID 1.0000 0.0000 1 1 466 4.60 0.00 0 6 50 3 825.40656 2474.20511 4.99 42.40 3118 3118 MS2 30/96 Linfeng_20130204_CTCF_6.raw High GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 100 4.60 0.00 0 11 15 3 800.34753 2399.02805 3.95 50.07 4263 4263 MS2 43/116 Linfeng_20130204_CTCF_8.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 566 4.58 0.00 0 1 4 2 738.39624 1475.78520 -0.08 35.02 2703 2703 MS2 20/22 Linfeng_20130204_CTCF_1.raw High GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 77 4.57 0.00 0 2 26 3 800.34399 2399.01743 -0.48 50.22 3929 3929 MS2 45/116 Linfeng_20130204_CTCF_4.raw High GFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 342 4.56 0.00 0 28 50 2 627.80774 1254.60820 0.66 26.99 1552 1552 MS2 21/26 Linfeng_20130204_CTCF_6.raw High GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 122 4.56 0.00 0 8 50 3 800.35046 2399.03684 7.61 50.41 4168 4168 MS2 46/116 Linfeng_20130204_CTCF_10.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 582 4.55 0.00 0 0 50 2 738.39642 1475.78557 0.17 34.01 2604 2604 MS2 20/22 Linfeng_20130204_CTCF_1.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 403 4.53 0.00 0 7 15 2 919.96063 1838.91399 -0.28 48.80 4653 4653 MS2 27/42 Linfeng_20130201_rIgG_7.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 541 4.53 0.00 0 0 29 2 738.39801 1475.78874 2.32 35.37 2396 2396 MS2 20/22 Linfeng_20130204_CTCF_4.raw High NKLNDLEEALQQAK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 456 4.53 0.00 1 10 11 2 807.42798 1613.84868 -0.45 47.06 4422 4422 MS2 22/26 Linfeng_20130201_rIgG_1.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 576 4.51 0.00 0 0 13 2 738.39642 1475.78557 0.17 35.28 3175 3175 MS2 20/22 Linfeng_20130201_rIgG_6.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 400 4.51 0.00 0 5 13 2 919.96277 1838.91826 2.04 48.95 4030 4030 MS2 27/42 Linfeng_20130204_CTCF_7.raw High SKEEAEALYHSKYEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 498 4.50 0.00 2 3 12 3 856.09802 2566.27951 0.41 39.78 2836 2836 MS2 28/84 Linfeng_20130204_CTCF_6.raw High GGSGGGGSISGGGYGSGGGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 114 4.46 0.00 0 0 50 2 871.38080 1741.75432 3.31 19.93 1323 1323 MS2 24/44 Linfeng_20130201_rIgG_5.raw High GFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 346 4.45 0.00 0 24 50 2 627.80719 1254.60710 -0.21 26.70 2214 2214 MS2 21/26 Linfeng_20130201_rIgG_4.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 417 4.44 0.00 0 10 16 2 919.96039 1838.91350 -0.55 49.05 4068 4068 MS2 28/42 Linfeng_20130204_CTCF_9.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 541 4.42 0.00 0 0 20 2 738.39716 1475.78703 1.16 35.26 2389 2389 MS2 20/22 Linfeng_20130204_CTCF_3.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 546 4.42 0.00 0 11 50 2 738.39691 1475.78655 0.83 34.26 2266 2266 MS2 20/22 Linfeng_20130204_CTCF_6.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 543 4.40 0.00 0 1 9 2 738.39697 1475.78667 0.91 35.32 2373 2373 MS2 19/22 Linfeng_20130204_CTCF_6.raw High MSGDLSSNVTVSVTSSTISSNVASK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 400 4.38 0.00 0 0 50 2 1229.60498 2458.20268 1.97 51.76 4104 4104 MS2 21/48 Linfeng_20130204_CTCF_6.raw High GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 61 4.37 0.00 0 0 14 2 1200.01208 2399.01689 -0.70 49.93 4711 4711 MS2 32/58 Linfeng_20130201_rIgG_4.raw High NKLNDLEEALQQAK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 458 4.36 0.00 1 16 32 2 807.42865 1613.85002 0.39 47.54 4416 4416 MS2 22/26 Linfeng_20130201_rIgG_4.raw High mSGDLSSNVTVSVTSSTISSNVASK Unambiguous 1 1 P35908 M1(Oxidation) CID 1.0000 0.0000 1 1 479 4.36 0.00 0 0 49 3 825.40375 2474.19669 1.59 42.25 3938 3938 MS2 37/96 Linfeng_20130201_rIgG_7.raw High mSGDLSSNVTVSVTSSTISSNVASK Unambiguous 1 1 P35908 M1(Oxidation) CID 1.0000 0.0000 1 1 468 4.36 0.00 0 14 50 3 825.40662 2474.20530 5.07 51.69 4913 4913 MS2 30/96 Linfeng_20130201_rIgG_4.raw High TSQNSELNNmQDLVEDYK Unambiguous 1 1 P35908 M10(Oxidation) CID 1.0000 0.0000 1 1 185 4.35 0.00 0 0 50 2 1072.47864 2143.95000 2.38 37.18 2920 2920 MS2 25/34 Linfeng_20130204_CTCF_1.raw High GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 79 4.34 0.00 0 11 13 3 800.34442 2399.01871 0.05 50.02 4833 4833 MS2 41/116 Linfeng_20130201_rIgG_8.raw High GGGGGGFRGFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 395 4.34 0.00 1 8 50 3 633.97394 1899.90726 0.80 33.87 2985 2985 MS2 33/84 Linfeng_20130201_rIgG_2.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 593 4.33 0.00 0 0 12 2 738.39655 1475.78581 0.33 34.88 3083 3083 MS2 20/22 Linfeng_20130201_rIgG_2.raw High NKLNDLEEALQQAK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 475 4.33 0.00 1 22 31 2 807.42859 1613.84990 0.31 47.83 4538 4538 MS2 21/26 Linfeng_20130201_rIgG_7.raw High SKEEAEALYHSKYEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 488 4.33 0.00 2 10 50 4 642.32721 2566.28701 3.33 39.51 3015 3015 MS2 28/126 Linfeng_20130204_CTCF_8.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 394 4.32 0.00 0 14 26 2 919.95996 1838.91265 -1.01 49.93 3917 3917 MS2 29/42 Linfeng_20130204_CTCF_6.raw High TSQNSELNNmQDLVEDYK Unambiguous 1 1 P35908 M10(Oxidation) CID 1.0000 0.0000 1 1 155 4.32 0.00 0 0 50 2 1072.47632 2143.94536 0.22 37.15 3333 3333 MS2 26/34 Linfeng_20130201_rIgG_1.raw High GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 57 4.31 0.00 0 0 8 2 1200.01208 2399.01689 -0.70 49.83 4669 4669 MS2 32/58 Linfeng_20130201_rIgG_2.raw High GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 67 4.31 0.00 0 0 31 2 1200.01563 2399.02397 2.25 49.77 4235 4235 MS2 33/58 Linfeng_20130204_CTCF_1.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 584 4.29 0.00 0 0 32 2 738.39600 1475.78472 -0.41 34.74 3090 3090 MS2 20/22 Linfeng_20130201_rIgG_1.raw High AAFGGSGGRGSSSGGGYSSGSSSYGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 88 4.26 0.00 1 15 50 3 834.35986 2501.06504 -0.91 24.40 1957 1957 MS2 26/112 Linfeng_20130201_rIgG_1.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 410 4.26 0.00 0 3 50 2 919.95721 1838.90715 -4.00 58.39 5204 5204 MS2 23/42 Linfeng_20130204_CTCF_2.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 545 4.24 0.00 0 3 50 2 738.39746 1475.78765 1.57 34.31 2490 2490 MS2 20/22 Linfeng_20130204_CTCF_7.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 550 4.24 0.00 0 0 4 2 738.39618 1475.78508 -0.16 35.12 3113 3113 MS2 20/22 Linfeng_20130201_rIgG_3.raw High TSQNSELNNmQDLVEDYK Unambiguous 1 1 P35908 M10(Oxidation) CID 1.0000 0.0000 1 1 188 4.23 0.00 0 36 50 3 715.31934 2143.94345 -0.67 37.10 3328 3328 MS2 26/68 Linfeng_20130201_rIgG_1.raw High GGSGGGGSISGGGYGSGGGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 96 4.22 0.00 0 0 50 2 871.37939 1741.75151 1.70 20.88 934 934 MS2 22/44 Linfeng_20130204_CTCF_6.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 588 4.21 0.00 0 2 25 2 738.39575 1475.78423 -0.74 35.12 3126 3126 MS2 20/22 Linfeng_20130201_rIgG_9.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 405 4.20 0.00 0 21 50 2 919.96130 1838.91533 0.45 58.19 4874 4874 MS2 26/42 Linfeng_20130204_CTCF_6.raw High TSQNSELNNmQDLVEDYK Unambiguous 1 1 P35908 M10(Oxidation) CID 1.0000 0.0000 1 1 169 4.20 0.00 0 0 50 2 1072.47717 2143.94707 1.01 37.36 3338 3338 MS2 26/34 Linfeng_20130201_rIgG_3.raw High GFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 348 4.19 0.00 0 23 50 2 627.80646 1254.60564 -1.38 26.64 2232 2232 MS2 22/26 Linfeng_20130201_rIgG_9.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 550 4.19 0.00 0 4 50 2 738.39703 1475.78679 1.00 35.79 2602 2602 MS2 20/22 Linfeng_20130204_CTCF_10.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 551 4.19 0.00 0 0 26 2 738.39618 1475.78508 -0.16 35.22 3220 3220 MS2 20/22 Linfeng_20130201_rIgG_7.raw High NKLNDLEEALQQAK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 492 4.19 0.00 1 10 14 3 538.62177 1613.85074 0.83 47.51 4412 4412 MS2 28/52 Linfeng_20130201_rIgG_4.raw High GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 87 4.18 0.00 0 5 19 3 800.34491 2399.02018 0.66 50.16 4204 4204 MS2 46/116 Linfeng_20130204_CTCF_9.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 395 4.16 0.00 0 14 32 2 919.95996 1838.91265 -1.01 48.88 3782 3782 MS2 28/42 Linfeng_20130204_CTCF_4.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 591 4.16 0.00 0 0 50 2 738.39587 1475.78447 -0.58 34.14 3113 3113 MS2 20/22 Linfeng_20130201_rIgG_7.raw High TSQNSELNNmQDLVEDYK Unambiguous 1 1 P35908 M10(Oxidation) CID 1.0000 0.0000 1 1 174 4.16 0.00 0 0 50 2 1072.47693 2143.94658 0.79 37.53 2908 2908 MS2 22/34 Linfeng_20130204_CTCF_2.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 542 4.16 0.00 0 2 45 2 738.39825 1475.78923 2.65 35.43 2601 2601 MS2 17/22 Linfeng_20130204_CTCF_7.raw High mSGDLSSNVTVSVTSSTISSNVASK Unambiguous 1 1 P35908 M1(Oxidation) CID 1.0000 0.0000 1 1 455 4.15 0.00 0 0 26 3 825.40265 2474.19339 0.26 42.42 3115 3115 MS2 28/96 Linfeng_20130204_CTCF_3.raw High AAFGGSGGRGSSSGGGYSSGSSSYGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 84 4.14 0.00 1 26 50 3 834.35950 2501.06394 -1.35 24.38 1961 1961 MS2 32/112 Linfeng_20130201_rIgG_3.raw High NKLNDLEEALQQAK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 458 4.14 0.00 1 16 39 2 807.42804 1613.84880 -0.37 47.66 4428 4428 MS2 22/26 Linfeng_20130201_rIgG_3.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 547 4.14 0.00 0 0 12 2 738.39648 1475.78569 0.25 35.46 2624 2624 MS2 18/22 Linfeng_20130204_CTCF_9.raw High mSGDLSSNVTVSVTSSTISSNVASK Unambiguous 1 1 P35908 M1(Oxidation) CID 1.0000 0.0000 1 1 453 4.14 0.00 0 61 50 3 825.40308 2474.19468 0.78 42.26 3885 3885 MS2 36/96 Linfeng_20130201_rIgG_6.raw High MSGDLSSNVTVSVTSSTISSNVASK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 475 4.13 0.00 0 0 50 3 820.07281 2458.20389 2.46 51.64 4092 4092 MS2 28/96 Linfeng_20130204_CTCF_6.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 425 4.13 0.00 0 7 17 2 919.95966 1838.91203 -1.35 48.77 4580 4580 MS2 27/42 Linfeng_20130201_rIgG_9.raw High GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 58 4.12 0.00 0 0 19 2 1200.01135 2399.01543 -1.31 49.97 4721 4721 MS2 34/58 Linfeng_20130201_rIgG_10.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 597 4.12 0.00 0 1 49 2 738.39661 1475.78594 0.42 34.96 3100 3100 MS2 20/22 Linfeng_20130201_rIgG_10.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 406 4.12 0.00 0 11 50 2 919.95898 1838.91069 -2.08 58.34 5196 5196 MS2 25/42 Linfeng_20130204_CTCF_1.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 558 4.10 0.00 0 0 50 2 738.39612 1475.78496 -0.25 33.76 2974 2974 MS2 20/22 Linfeng_20130201_rIgG_2.raw High NKLNDLEEALQQAK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 454 4.09 0.00 1 14 28 3 538.62091 1613.84818 -0.76 47.27 4365 4365 MS2 30/52 Linfeng_20130201_rIgG_2.raw High mSGDLSSNVTVSVTSSTISSNVASK Unambiguous 1 1 P35908 M1(Oxidation) CID 1.0000 0.0000 1 1 453 4.09 0.00 0 0 16 3 825.40265 2474.19339 0.26 42.38 3407 3407 MS2 28/96 Linfeng_20130204_CTCF_2.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 551 4.09 0.00 0 3 50 2 738.39679 1475.78630 0.66 34.08 2993 2993 MS2 20/22 Linfeng_20130201_rIgG_4.raw High GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 61 4.09 0.00 0 0 27 2 1200.01208 2399.01689 -0.70 49.85 4692 4692 MS2 30/58 Linfeng_20130201_rIgG_3.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 438 4.07 0.00 0 16 50 2 919.96313 1838.91899 2.44 48.79 3771 3771 MS2 27/42 Linfeng_20130204_CTCF_3.raw High TSQNSELNNmQDLVEDYK Unambiguous 1 1 P35908 M10(Oxidation) CID 1.0000 0.0000 1 1 171 4.06 0.00 0 0 50 2 1072.47705 2143.94682 0.90 37.38 3324 3324 MS2 26/34 Linfeng_20130201_rIgG_4.raw High TSQNSELNNMQDLVEDYKK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 253 4.06 0.00 1 18 14 3 752.68274 2256.03366 -5.00 46.69 4315 4315 MS2 27/72 Linfeng_20130201_rIgG_4.raw High TSQNSELNNMQDLVEDYKK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 350 4.06 0.00 1 1 11 3 752.68982 2256.05490 4.41 46.43 3871 3871 MS2 24/72 Linfeng_20130204_CTCF_1.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 586 4.05 0.00 0 9 50 2 738.39624 1475.78520 -0.08 34.38 2516 2516 MS2 19/22 Linfeng_20130204_CTCF_9.raw High TSQNSELNNmQDLVEDYK Unambiguous 1 1 P35908 M10(Oxidation) CID 1.0000 0.0000 1 1 186 4.05 0.00 0 0 50 2 1072.47803 2143.94878 1.81 37.14 3309 3309 MS2 24/34 Linfeng_20130201_rIgG_2.raw High NKLNDLEEALQQAK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 488 4.05 0.00 1 9 17 3 538.62158 1613.85019 0.49 47.55 4415 4415 MS2 29/52 Linfeng_20130201_rIgG_3.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 582 4.04 0.00 0 0 50 2 738.39655 1475.78581 0.33 34.18 3066 3066 MS2 20/22 Linfeng_20130201_rIgG_6.raw High GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 62 4.04 0.00 0 0 16 2 1200.01270 2399.01811 -0.19 49.63 4745 4745 MS2 33/58 Linfeng_20130201_rIgG_1.raw High LNDLEEALQQAK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 464 4.03 0.00 0 0 20 2 686.36060 1371.71391 1.76 46.79 3560 3560 MS2 19/22 Linfeng_20130204_CTCF_4.raw High LNDLEEALQQAK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 428 4.03 0.00 0 2 17 2 686.36151 1371.71575 3.09 46.20 3847 3847 MS2 19/22 Linfeng_20130204_CTCF_1.raw High MSGDLSSNVTVSVTSSTISSNVASK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 422 4.02 0.00 0 6 50 3 820.06976 2458.19474 -1.26 51.68 4341 4341 MS2 24/96 Linfeng_20130204_CTCF_7.raw High GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 65 4.02 0.00 0 0 31 2 1200.01172 2399.01616 -1.01 50.19 4181 4181 MS2 37/58 Linfeng_20130204_CTCF_7.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 551 4.02 0.00 0 0 14 2 738.39612 1475.78496 -0.25 35.17 3102 3102 MS2 19/22 Linfeng_20130201_rIgG_4.raw High NKLNDLEEALQQAK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 465 4.01 0.00 1 9 30 2 807.42914 1613.85100 0.99 47.47 4389 4389 MS2 22/26 Linfeng_20130201_rIgG_2.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 575 4.01 0.00 0 2 50 2 738.39648 1475.78569 0.25 34.11 2570 2570 MS2 19/22 Linfeng_20130204_CTCF_2.raw High GGGGGGFRGFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 409 4.01 0.00 1 47 50 3 633.97339 1899.90561 -0.06 34.15 3000 3000 MS2 28/84 Linfeng_20130201_rIgG_4.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 490 4.00 0.00 0 3 50 2 738.39819 1475.78911 2.57 35.09 3075 3075 MS2 18/22 Linfeng_20130201_rIgG_8.raw High GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 54 4.00 0.00 0 0 27 2 1200.01306 2399.01885 0.11 50.30 4770 4770 MS2 35/58 Linfeng_20130201_rIgG_9.raw High GGSGGGGSISGGGYGSGGGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 101 4.00 0.00 0 0 50 2 871.37970 1741.75212 2.05 19.96 1400 1400 MS2 20/44 Linfeng_20130201_rIgG_7.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 569 3.99 0.00 0 3 50 2 738.39581 1475.78435 -0.66 35.12 2669 2669 MS2 18/22 Linfeng_20130204_CTCF_2.raw High AAFGGSGGRGSSSGGGYSSGSSSYGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 89 3.98 0.00 1 0 50 3 834.36102 2501.06852 0.48 24.47 1951 1951 MS2 33/112 Linfeng_20130201_rIgG_2.raw High MSGDLSSNVTVSVTSSTISSNVASK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 443 3.97 0.00 0 0 47 3 820.07098 2458.19840 0.23 46.49 3555 3555 MS2 30/96 Linfeng_20130204_CTCF_6.raw High GFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 331 3.97 0.00 0 17 50 2 627.80823 1254.60918 1.44 26.37 1492 1492 MS2 23/26 Linfeng_20130204_CTCF_6.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 595 3.95 0.00 0 3 50 2 738.39661 1475.78594 0.42 34.29 2992 2992 MS2 20/22 Linfeng_20130201_rIgG_8.raw High GGGGGGFRGFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 406 3.94 0.00 1 20 50 3 633.97321 1899.90506 -0.35 33.80 2997 2997 MS2 25/84 Linfeng_20130201_rIgG_1.raw High mSGDLSSNVTVSVTSSTISSNVASK Unambiguous 1 1 P35908 M1(Oxidation) CID 1.0000 0.0000 1 1 439 3.94 0.00 0 0 50 3 825.40173 2474.19065 -0.85 42.62 3133 3133 MS2 26/96 Linfeng_20130204_CTCF_4.raw High GGSGGGGSISGGGYGSGGGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 88 3.93 0.00 0 0 50 2 871.37756 1741.74785 -0.40 19.67 1333 1333 MS2 22/44 Linfeng_20130201_rIgG_1.raw High mSGDLSSNVTVSVTSSTISSNVASK Unambiguous 1 1 P35908 M1(Oxidation) CID 1.0000 0.0000 1 1 440 3.92 0.00 0 4 44 3 825.40149 2474.18991 -1.15 42.43 3887 3887 MS2 27/96 Linfeng_20130201_rIgG_8.raw High MSGDLSSNVTVSVTSSTISSNVASK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 452 3.91 0.00 0 5 15 3 820.07178 2458.20078 1.19 45.33 3431 3431 MS2 27/96 Linfeng_20130204_CTCF_6.raw High mSGDLSSNVTVSVTSSTISSNVASK Unambiguous 1 1 P35908 M1(Oxidation) CID 1.0000 0.0000 1 1 472 3.91 0.00 0 0 50 3 825.40387 2474.19706 1.74 42.26 3853 3853 MS2 31/96 Linfeng_20130201_rIgG_9.raw High GFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 350 3.91 0.00 0 24 50 2 627.80774 1254.60820 0.66 26.81 2318 2318 MS2 19/26 Linfeng_20130201_rIgG_7.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 554 3.91 0.00 0 0 50 2 738.39691 1475.78655 0.83 33.75 2992 2992 MS2 18/22 Linfeng_20130201_rIgG_1.raw High LNDLEEALQQAK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 436 3.91 0.00 0 0 2 2 686.35968 1371.71208 0.42 46.56 4301 4301 MS2 19/22 Linfeng_20130201_rIgG_4.raw High GFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 340 3.91 0.00 0 28 50 2 627.80701 1254.60674 -0.51 26.77 2237 2237 MS2 20/26 Linfeng_20130201_rIgG_1.raw High SKEEAEALYHSKYEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 491 3.91 0.00 2 15 34 4 642.32361 2566.27260 -2.28 39.55 3565 3565 MS2 36/126 Linfeng_20130201_rIgG_10.raw High GGSSSGGGYGSGGGGSSSVK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 97 3.91 0.00 0 0 50 2 794.84406 1588.68083 -1.65 16.63 931 931 MS2 23/38 Linfeng_20130201_rIgG_1.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 553 3.91 0.00 0 12 50 2 738.39728 1475.78728 1.33 34.35 2295 2295 MS2 20/22 Linfeng_20130204_CTCF_4.raw High NKLNDLEEALQQAK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 479 3.90 0.00 1 27 20 3 538.62146 1613.84983 0.26 47.72 4525 4525 MS2 29/52 Linfeng_20130201_rIgG_7.raw High LNDLEEALQQAK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 440 3.87 0.00 0 1 6 2 686.35944 1371.71160 0.07 46.66 4312 4312 MS2 19/22 Linfeng_20130201_rIgG_3.raw High GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 85 3.87 0.00 0 15 50 3 800.34607 2399.02365 2.11 50.11 3916 3916 MS2 45/116 Linfeng_20130204_CTCF_3.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 580 3.86 0.00 0 0 50 2 738.39636 1475.78545 0.09 33.98 3004 3004 MS2 19/22 Linfeng_20130201_rIgG_10.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 548 3.86 0.00 0 6 50 2 738.39697 1475.78667 0.91 34.03 3005 3005 MS2 19/22 Linfeng_20130201_rIgG_3.raw High TSQNSELNNMQDLVEDYKK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 277 3.85 0.00 1 0 50 2 1128.52722 2256.04717 0.98 47.19 3625 3625 MS2 22/36 Linfeng_20130204_CTCF_6.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 554 3.83 0.00 0 2 50 2 738.39758 1475.78789 1.74 34.25 2290 2290 MS2 19/22 Linfeng_20130204_CTCF_3.raw High GGGFGGGSSFGGGSGFSGGGFGGGGFGGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 61 3.82 0.00 0 0 22 2 1200.01172 2399.01616 -1.01 49.93 4725 4725 MS2 37/58 Linfeng_20130201_rIgG_9.raw High GFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 344 3.81 0.00 0 34 50 2 627.80609 1254.60491 -1.97 26.86 2230 2230 MS2 19/26 Linfeng_20130201_rIgG_8.raw High GFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 323 3.81 0.00 0 32 50 2 627.80646 1254.60564 -1.38 26.15 2013 2013 MS2 18/26 Linfeng_20130201_rIgG_5.raw High LNDLEEALQQAK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 450 3.81 0.00 0 0 16 2 686.35962 1371.71196 0.34 46.80 3779 3779 MS2 19/22 Linfeng_20130204_CTCF_7.raw High SKEEAEALYHSKYEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 490 3.80 0.00 2 8 20 4 642.32495 2566.27797 -0.19 39.60 3578 3578 MS2 36/126 Linfeng_20130201_rIgG_9.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 579 3.79 0.00 0 0 50 2 738.39526 1475.78325 -1.40 34.10 3025 3025 MS2 19/22 Linfeng_20130201_rIgG_9.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 592 3.79 0.00 0 8 50 2 738.39661 1475.78594 0.42 34.73 2494 2494 MS2 19/22 Linfeng_20130204_CTCF_10.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 421 3.79 0.00 0 19 21 2 919.96051 1838.91374 -0.42 48.68 4547 4547 MS2 26/42 Linfeng_20130201_rIgG_3.raw High AAFGGSGGRGSSSGGGYSSGSSSYGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 97 3.78 0.00 1 22 50 3 834.36206 2501.07163 1.72 23.83 1859 1859 MS2 34/112 Linfeng_20130201_rIgG_4.raw High GFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 347 3.78 0.00 0 29 50 2 627.80762 1254.60796 0.47 27.05 1818 1818 MS2 19/26 Linfeng_20130204_CTCF_2.raw High LNDLEEALQQAK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 443 3.78 0.00 0 4 6 2 686.35944 1371.71160 0.07 45.97 4289 4289 MS2 19/22 Linfeng_20130201_rIgG_1.raw High GFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 349 3.78 0.00 0 34 50 2 627.80750 1254.60771 0.27 26.69 2228 2228 MS2 20/26 Linfeng_20130201_rIgG_1.raw High TSQNSELNNmQDLVEDYK Unambiguous 1 1 P35908 M10(Oxidation) CID 1.0000 0.0000 1 1 169 3.77 0.00 0 0 50 2 1072.47510 2143.94292 -0.92 37.77 3424 3424 MS2 23/34 Linfeng_20130201_rIgG_6.raw High GFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 343 3.77 0.00 0 34 50 2 627.80695 1254.60661 -0.60 27.07 2304 2304 MS2 22/26 Linfeng_20130201_rIgG_6.raw High GFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 333 3.76 0.00 0 35 50 2 627.80731 1254.60735 -0.02 27.02 2343 2343 MS2 20/26 Linfeng_20130201_rIgG_7.raw High AAFGGSGGRGSSSGGGYSSGSSSYGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 90 3.74 0.00 1 0 50 3 834.35992 2501.06522 -0.84 23.93 1900 1900 MS2 29/112 Linfeng_20130201_rIgG_10.raw High GGSGGGGSISGGGYGSGGGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 111 3.74 0.00 0 0 50 2 871.38055 1741.75383 3.03 24.27 1288 1288 MS2 17/44 Linfeng_20130204_CTCF_6.raw High GFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 334 3.73 0.00 0 28 50 2 627.80695 1254.60661 -0.60 26.92 2090 2090 MS2 20/26 Linfeng_20130201_rIgG_5.raw High TSQNSELNNMQDLVEDYKK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 338 3.71 0.00 1 16 50 3 752.68878 2256.05179 3.03 47.07 3590 3590 MS2 25/72 Linfeng_20130204_CTCF_4.raw High GFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 350 3.71 0.00 0 34 50 2 627.80731 1254.60735 -0.02 25.96 1719 1719 MS2 18/26 Linfeng_20130204_CTCF_1.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 452 3.71 0.00 0 47 50 2 919.96747 1838.92766 7.15 59.15 4971 4971 MS2 24/42 Linfeng_20130204_CTCF_6.raw High GGSGGGGSISGGGYGSGGGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 101 3.70 0.00 0 0 50 2 871.37994 1741.75261 2.33 20.00 1396 1396 MS2 20/44 Linfeng_20130201_rIgG_6.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 544 3.70 0.00 0 13 50 2 738.39716 1475.78703 1.16 36.90 3292 3292 MS2 17/22 Linfeng_20130201_rIgG_3.raw High TSQNSELNNMQDLVEDYKK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 301 3.70 0.00 1 10 10 3 752.68561 2256.04227 -1.19 46.82 4347 4347 MS2 25/72 Linfeng_20130201_rIgG_9.raw High YEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 447 3.69 0.00 0 22 50 2 597.31122 1193.61516 -0.81 37.65 2791 2791 MS2 17/18 Linfeng_20130204_CTCF_10.raw High GFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 343 3.69 0.00 0 33 50 2 627.80743 1254.60759 0.18 26.81 2241 2241 MS2 22/26 Linfeng_20130201_rIgG_3.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 553 3.69 0.00 0 0 50 2 738.39685 1475.78642 0.75 34.74 2883 2883 MS2 20/22 Linfeng_20130201_rIgG_5.raw High AAFGGSGGRGSSSGGGYSSGSSSYGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 91 3.68 0.00 1 10 50 3 834.36127 2501.06925 0.77 23.45 1824 1824 MS2 32/112 Linfeng_20130201_rIgG_2.raw High NKLNDLEEALQQAK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 492 3.68 0.00 1 6 35 3 538.62115 1613.84891 -0.30 47.16 3952 3952 MS2 24/52 Linfeng_20130204_CTCF_1.raw High TSQNSELNNMQDLVEDYKK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 268 3.68 0.00 1 21 25 3 752.68372 2256.03659 -3.70 46.81 4422 4422 MS2 27/72 Linfeng_20130201_rIgG_7.raw High LLRDYQELMNVK Unambiguous 5 1 P35908 CID 1.0000 0.0000 1 1 480 3.68 0.00 1 6 50 3 507.94125 1521.80921 -0.15 44.29 4057 4057 MS2 21/44 Linfeng_20130201_rIgG_3.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 415 3.67 0.00 0 13 16 2 919.95959 1838.91191 -1.41 48.43 4592 4592 MS2 29/42 Linfeng_20130201_rIgG_1.raw High GFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 336 3.67 0.00 0 29 50 2 627.80688 1254.60649 -0.70 26.96 2241 2241 MS2 20/26 Linfeng_20130201_rIgG_8.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 474 3.66 0.00 0 4 50 2 738.40070 1475.79411 5.96 35.25 2567 2567 MS2 16/22 Linfeng_20130204_CTCF_8.raw High GGSGGGGSISGGGYGSGGGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 82 3.66 0.00 0 66 50 2 871.37622 1741.74516 -1.94 19.85 1364 1364 MS2 16/44 Linfeng_20130201_rIgG_8.raw High QSGSRGGSGGGGSISGGGYGSGGGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 159 3.65 0.00 1 0 50 3 753.00330 2256.99533 0.69 17.97 1091 1091 MS2 28/108 Linfeng_20130201_rIgG_4.raw High GFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 348 3.65 0.00 0 35 50 2 627.80664 1254.60600 -1.09 26.84 2253 2253 MS2 22/26 Linfeng_20130201_rIgG_9.raw High LNDLEEALQQAK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 457 3.65 0.00 0 4 13 2 686.35925 1371.71123 -0.20 46.74 3556 3556 MS2 19/22 Linfeng_20130204_CTCF_3.raw High GGSGGGGSISGGGYGSGGGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 109 3.64 0.00 0 0 50 2 871.38037 1741.75347 2.82 21.94 1048 1048 MS2 21/44 Linfeng_20130204_CTCF_6.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 592 3.64 0.00 0 17 50 2 738.39545 1475.78362 -1.15 40.94 3306 3306 MS2 16/22 Linfeng_20130204_CTCF_1.raw High SKEEAEALYHSKYEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 485 3.64 0.00 2 5 13 4 642.32635 2566.28359 2.00 39.68 2825 2825 MS2 27/126 Linfeng_20130204_CTCF_6.raw High LNDLEEALQQAK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 449 3.63 0.00 0 4 7 2 686.35956 1371.71184 0.25 46.59 4397 4397 MS2 20/22 Linfeng_20130201_rIgG_7.raw High SKEEAEALYHSKYEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 488 3.63 0.00 2 15 30 4 642.32477 2566.27724 -0.47 39.71 3568 3568 MS2 36/126 Linfeng_20130201_rIgG_4.raw High YEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 463 3.62 0.00 0 24 50 2 597.31055 1193.61382 -1.93 37.55 2613 2613 MS2 17/18 Linfeng_20130204_CTCF_4.raw High GGGGGGFRGFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 415 3.62 0.00 1 35 50 3 633.97418 1899.90799 1.19 33.72 2969 2969 MS2 24/84 Linfeng_20130201_rIgG_2.raw High MSGDLSSNVTVSVTSSTISSNVASK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 424 3.61 0.00 0 0 50 2 1229.60754 2458.20781 4.06 58.29 4883 4883 MS2 18/48 Linfeng_20130204_CTCF_6.raw High GGGGGGFRGFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 398 3.61 0.00 1 25 50 3 633.97369 1899.90653 0.42 35.14 3115 3115 MS2 27/84 Linfeng_20130201_rIgG_3.raw High MSGDLSSNVTVSVTSSTISSNVASK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 448 3.60 0.00 0 0 50 3 820.07172 2458.20060 1.12 44.22 4088 4088 MS2 28/96 Linfeng_20130201_rIgG_1.raw High GGSGGGGSISGGGYGSGGGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 93 3.60 0.00 0 0 50 2 871.37854 1741.74980 0.72 20.54 1462 1462 MS2 22/44 Linfeng_20130201_rIgG_3.raw High LNDLEEALQQAK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 441 3.59 0.00 0 4 9 2 686.36011 1371.71294 1.05 46.64 4353 4353 MS2 19/22 Linfeng_20130201_rIgG_6.raw High TSQNSELNNmQDLVEDYK Unambiguous 1 1 P35908 M10(Oxidation) CID 1.0000 0.0000 1 1 188 3.59 0.00 0 28 50 3 715.31970 2143.94455 -0.16 37.64 3411 3411 MS2 24/68 Linfeng_20130201_rIgG_6.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 556 3.58 0.00 0 22 50 2 738.39703 1475.78679 1.00 43.53 3977 3977 MS2 20/22 Linfeng_20130201_rIgG_3.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 411 3.58 0.00 0 9 19 2 919.95959 1838.91191 -1.41 48.78 4575 4575 MS2 24/42 Linfeng_20130201_rIgG_10.raw High GFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 345 3.58 0.00 0 62 50 2 627.80713 1254.60698 -0.31 26.56 2198 2198 MS2 16/26 Linfeng_20130201_rIgG_4.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 416 3.57 0.00 0 6 18 2 919.95935 1838.91142 -1.68 52.31 4975 4975 MS2 22/42 Linfeng_20130201_rIgG_4.raw High GFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 350 3.56 0.00 0 34 50 2 627.80707 1254.60686 -0.41 26.57 2200 2200 MS2 22/26 Linfeng_20130201_rIgG_2.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 124 3.56 0.00 0 9 50 3 440.86563 1320.58234 -0.43 28.18 2396 2396 MS2 26/60 Linfeng_20130201_rIgG_4.raw High TSQNSELNNMQDLVEDYKK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 323 3.56 0.00 1 5 6 3 752.68646 2256.04483 -0.05 47.17 3823 3823 MS2 20/72 Linfeng_20130204_CTCF_7.raw High LNDLEEALQQAK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 449 3.56 0.00 0 1 6 2 686.35938 1371.71147 -0.02 46.33 4260 4260 MS2 20/22 Linfeng_20130201_rIgG_2.raw High TSQNSELNNmQDLVEDYKK Unambiguous 1 1 P35908 M10(Oxidation) CID 1.0000 0.0000 1 1 291 3.56 0.00 1 0 50 3 758.01770 2272.03855 -0.58 33.13 2394 2394 MS2 20/72 Linfeng_20130204_CTCF_9.raw High LLRDYQELmNVK Unambiguous 5 1 P35908 M9(Oxidation) CID 1.0000 0.0000 1 1 483 3.56 0.00 1 3 50 3 513.27191 1537.80118 -2.06 36.04 3218 3218 MS2 21/44 Linfeng_20130201_rIgG_9.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 421 3.56 0.00 0 11 50 2 919.96320 1838.91911 2.50 52.36 4408 4408 MS2 19/42 Linfeng_20130204_CTCF_7.raw High GFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 334 3.55 0.00 0 33 50 2 627.80719 1254.60710 -0.21 25.99 2128 2128 MS2 19/26 Linfeng_20130201_rIgG_4.raw High GSSSGGGYSSGSSSYGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 31 3.55 0.00 0 0 50 2 870.85596 1740.70464 -0.57 18.68 1204 1204 MS2 22/38 Linfeng_20130201_rIgG_1.raw High SKEEAEALYHSKYEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 495 3.55 0.00 2 22 21 4 642.32367 2566.27285 -2.19 39.32 3413 3413 MS2 33/126 Linfeng_20130201_rIgG_5.raw High GGSGGGGSISGGGYGSGGGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 105 3.55 0.00 0 0 50 2 871.38000 1741.75273 2.40 19.61 1286 1286 MS2 16/44 Linfeng_20130201_rIgG_5.raw High GGSGGGGSISGGGYGSGGGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 105 3.55 0.00 0 27 50 2 871.38007 1741.75286 2.47 19.53 1326 1326 MS2 13/44 Linfeng_20130201_rIgG_3.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 556 3.55 0.00 0 17 50 2 738.39838 1475.78948 2.82 40.76 2941 2941 MS2 18/22 Linfeng_20130204_CTCF_4.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 371 3.54 0.00 0 5 7 2 632.35077 1263.69426 -0.09 50.01 4794 4794 MS2 18/20 Linfeng_20130201_rIgG_1.raw High NKLNDLEEALQQAK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 462 3.54 0.00 1 20 27 3 538.62225 1613.85221 1.74 48.06 3926 3926 MS2 23/52 Linfeng_20130204_CTCF_7.raw High TSQNSELNNMQDLVEDYKK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 291 3.54 0.00 1 14 20 3 752.68494 2256.04026 -2.08 46.95 3579 3579 MS2 25/72 Linfeng_20130204_CTCF_3.raw High GGSGGGGSISGGGYGSGGGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 93 3.54 0.00 0 13 50 2 871.37848 1741.74968 0.65 19.71 1350 1350 MS2 21/44 Linfeng_20130201_rIgG_9.raw High TSQNSELNNMQDLVEDYKK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 307 3.54 0.00 1 20 16 3 752.68616 2256.04392 -0.46 46.74 4365 4365 MS2 27/72 Linfeng_20130201_rIgG_6.raw High GGGGGGFRGFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 398 3.54 0.00 1 23 36 3 633.97369 1899.90653 0.42 34.24 2829 2829 MS2 31/84 Linfeng_20130201_rIgG_5.raw High AAFGGSGGRGSSSGGGYSSGSSSYGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 86 3.51 0.00 1 0 50 3 834.36047 2501.06687 -0.18 23.94 1902 1902 MS2 34/112 Linfeng_20130201_rIgG_1.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 120 3.51 0.00 0 0 50 2 660.79492 1320.58257 -0.26 27.64 2346 2346 MS2 24/30 Linfeng_20130201_rIgG_10.raw High GGGGGGFRGFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 392 3.51 0.00 1 47 50 3 633.97296 1899.90433 -0.74 35.36 3183 3183 MS2 28/84 Linfeng_20130201_rIgG_6.raw High LLRDYQELMNVK Unambiguous 5 1 P35908 CID 1.0000 0.0000 1 1 456 3.50 0.00 1 8 50 2 761.40930 1521.81133 1.24 44.19 4034 4034 MS2 16/22 Linfeng_20130201_rIgG_2.raw High GFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 328 3.50 0.00 0 32 50 2 627.80658 1254.60588 -1.19 27.03 2266 2266 MS2 21/26 Linfeng_20130201_rIgG_10.raw High LLRDYQELMNVK Unambiguous 5 1 P35908 CID 1.0000 0.0000 1 1 476 3.49 0.00 1 3 41 3 507.94159 1521.81021 0.51 44.42 4064 4064 MS2 22/44 Linfeng_20130201_rIgG_4.raw High SKEEAEALYHSK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 460 3.48 0.00 1 47 50 3 464.56485 1391.68000 -0.13 20.70 1413 1413 MS2 24/44 Linfeng_20130201_rIgG_5.raw High SKEEAEALYHSKYEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 490 3.47 0.00 2 21 50 4 642.32495 2566.27797 -0.19 40.57 3221 3221 MS2 33/126 Linfeng_20130204_CTCF_2.raw High GFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 349 3.47 0.00 0 32 50 2 627.80695 1254.60661 -0.60 25.89 2136 2136 MS2 18/26 Linfeng_20130201_rIgG_1.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 551 3.47 0.00 0 5 50 2 738.39734 1475.78740 1.41 36.24 3226 3226 MS2 19/22 Linfeng_20130201_rIgG_3.raw High GGSGGGGSISGGGYGSGGGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 93 3.46 0.00 0 0 50 2 871.37793 1741.74858 0.02 19.87 833 833 MS2 18/44 Linfeng_20130204_CTCF_6.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 541 3.46 0.00 0 15 50 2 738.39716 1475.78703 1.16 36.72 2873 2873 MS2 19/22 Linfeng_20130204_CTCF_1.raw High TSQNSELNNMQDLVEDYKK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 272 3.45 0.00 1 18 10 3 752.68359 2256.03623 -3.87 46.67 4314 4314 MS2 25/72 Linfeng_20130201_rIgG_3.raw High GGSGGGGSISGGGYGSGGGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 93 3.45 0.00 0 0 50 2 871.37781 1741.74834 -0.12 22.94 1159 1159 MS2 16/44 Linfeng_20130204_CTCF_6.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 598 3.45 0.00 0 21 50 2 738.39496 1475.78264 -1.82 40.47 3701 3701 MS2 18/22 Linfeng_20130201_rIgG_6.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 584 3.44 0.00 0 50 50 2 738.39661 1475.78594 0.42 40.19 3228 3228 MS2 18/22 Linfeng_20130204_CTCF_1.raw High NKLNDLEEALQQAK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 495 3.44 0.00 1 15 23 3 538.62170 1613.85056 0.72 48.06 3718 3718 MS2 21/52 Linfeng_20130204_CTCF_6.raw High LLRDYQELmNVK Unambiguous 5 1 P35908 M9(Oxidation) CID 1.0000 0.0000 1 1 449 3.44 0.00 1 13 50 2 769.40558 1537.80388 -0.31 35.84 3169 3169 MS2 17/22 Linfeng_20130201_rIgG_4.raw High GFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 334 3.44 0.00 0 37 50 2 627.80695 1254.60661 -0.60 26.75 2234 2234 MS2 20/26 Linfeng_20130201_rIgG_3.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 588 3.43 0.00 0 17 50 2 738.39642 1475.78557 0.17 43.71 3996 3996 MS2 18/22 Linfeng_20130201_rIgG_3.raw High GFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 345 3.43 0.00 0 52 50 2 627.80707 1254.60686 -0.41 26.75 2311 2311 MS2 19/26 Linfeng_20130201_rIgG_7.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 381 3.43 0.00 0 3 7 2 632.35175 1263.69621 1.45 50.26 4722 4722 MS2 18/20 Linfeng_20130201_rIgG_2.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 139 3.42 0.00 0 19 50 3 440.86594 1320.58326 0.26 26.98 2250 2250 MS2 27/60 Linfeng_20130201_rIgG_2.raw High LLRDYQELMNVK Unambiguous 5 1 P35908 CID 1.0000 0.0000 1 1 478 3.42 0.00 1 3 50 3 507.94089 1521.80811 -0.88 44.61 4099 4099 MS2 23/44 Linfeng_20130201_rIgG_9.raw High TSQNSELNNmQDLVEDYKK Unambiguous 1 1 P35908 M10(Oxidation) CID 1.0000 0.0000 1 1 292 3.42 0.00 1 4 50 3 758.01794 2272.03928 -0.26 33.31 2929 2929 MS2 28/72 Linfeng_20130201_rIgG_2.raw High LLRDYQELmNVK Unambiguous 5 1 P35908 M9(Oxidation) CID 1.0000 0.0000 1 1 462 3.42 0.00 1 18 47 3 513.27246 1537.80283 -0.99 35.73 3158 3158 MS2 21/44 Linfeng_20130201_rIgG_4.raw High LLRDYQELmNVK Unambiguous 5 1 P35908 M9(Oxidation) CID 1.0000 0.0000 1 1 480 3.41 0.00 1 13 50 3 513.27307 1537.80466 0.20 35.74 3175 3175 MS2 24/44 Linfeng_20130201_rIgG_3.raw High AAFGGSGGRGSSSGGGYSSGSSSYGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 87 3.41 0.00 1 52 50 3 834.36084 2501.06797 0.26 23.62 1864 1864 MS2 32/112 Linfeng_20130201_rIgG_1.raw High FGGFGGPGGVGGLGGPGGFGPGGYPGGIHEVSVNQSLLQPLNVK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 284 3.40 0.00 0 0 9 4 1023.77032 4092.05947 -3.27 58.52 5781 5781 MS2 40/258 Linfeng_20130201_rIgG_1.raw High LNDLEEALQQAK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 465 3.39 0.00 0 13 50 2 686.36133 1371.71538 2.83 47.11 3809 3809 MS2 19/22 Linfeng_20130204_CTCF_10.raw High GSSSGGGYSSGSSSYGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 29 3.37 0.00 0 12 50 2 870.85425 1740.70122 -2.53 18.38 1166 1166 MS2 21/38 Linfeng_20130201_rIgG_9.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 597 3.36 0.00 0 18 50 2 738.39563 1475.78398 -0.91 40.38 3650 3650 MS2 19/22 Linfeng_20130201_rIgG_3.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 130 3.36 0.00 0 31 50 3 440.86575 1320.58271 -0.16 28.23 2220 2220 MS2 22/60 Linfeng_20130201_rIgG_5.raw High mSGDLSSNVTVSVTSSTISSNVASK Unambiguous 1 1 P35908 M1(Oxidation) CID 1.0000 0.0000 1 1 456 3.36 0.00 0 20 11 3 825.40271 2474.19358 0.33 42.20 3769 3769 MS2 26/96 Linfeng_20130201_rIgG_5.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 380 3.36 0.00 0 7 17 2 632.35144 1263.69560 0.97 50.45 4817 4817 MS2 18/20 Linfeng_20130201_rIgG_6.raw High LLRDYQELMNVK Unambiguous 5 1 P35908 CID 1.0000 0.0000 1 1 481 3.35 0.00 1 4 50 3 507.94125 1521.80921 -0.15 44.00 4014 4014 MS2 24/44 Linfeng_20130201_rIgG_2.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 364 3.35 0.00 0 0 23 2 632.35095 1263.69463 0.19 50.50 4792 4792 MS2 18/20 Linfeng_20130201_rIgG_9.raw High SKEEAEALYHSKYEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 476 3.35 0.00 2 20 8 4 642.32776 2566.28921 4.19 40.29 2890 2890 MS2 27/126 Linfeng_20130204_CTCF_6.raw High GFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 338 3.34 0.00 0 48 50 2 627.80713 1254.60698 -0.31 26.11 2226 2226 MS2 17/26 Linfeng_20130201_rIgG_7.raw High SKEEAEALYHSK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 476 3.33 0.00 1 49 50 3 464.56461 1391.67926 -0.66 20.59 1468 1468 MS2 20/44 Linfeng_20130201_rIgG_3.raw High GGSGGGGSISGGGYGSGGGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 104 3.33 0.00 0 0 50 2 871.37872 1741.75017 0.93 19.91 923 923 MS2 22/44 Linfeng_20130204_CTCF_2.raw High LLRDYQELmNVK Unambiguous 5 1 P35908 M9(Oxidation) CID 1.0000 0.0000 1 1 461 3.33 0.00 1 34 19 3 513.27277 1537.80375 -0.40 35.69 2986 2986 MS2 22/44 Linfeng_20130201_rIgG_5.raw High MSGDLSSNVTVSVTSSTISSNVASK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 459 3.32 0.00 0 20 50 3 820.07269 2458.20353 2.31 59.00 4957 4957 MS2 25/96 Linfeng_20130204_CTCF_6.raw High LLRDYQELMNVK Unambiguous 5 1 P35908 CID 1.0000 0.0000 1 1 477 3.32 0.00 1 4 22 3 507.94095 1521.80829 -0.76 44.58 4093 4093 MS2 20/44 Linfeng_20130201_rIgG_10.raw High GFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 337 3.32 0.00 0 63 50 2 627.80652 1254.60576 -1.28 26.57 2199 2199 MS2 19/26 Linfeng_20130201_rIgG_8.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 595 3.32 0.00 0 13 50 2 738.39624 1475.78520 -0.08 40.69 2936 2936 MS2 17/22 Linfeng_20130204_CTCF_3.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 474 3.32 0.00 0 11 50 2 919.96045 1838.91362 -0.48 58.23 5121 5121 MS2 22/42 Linfeng_20130204_CTCF_7.raw High NVQDAIADAEQR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 318 3.32 0.00 0 15 50 2 665.32404 1329.64079 1.05 35.27 2386 2386 MS2 19/22 Linfeng_20130204_CTCF_4.raw High YEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 535 3.31 0.00 0 27 50 2 597.31201 1193.61675 0.52 36.22 2464 2464 MS2 17/18 Linfeng_20130204_CTCF_6.raw High LNDLEEALQQAK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 436 3.31 0.00 0 6 50 2 686.36163 1371.71599 3.27 46.81 3586 3586 MS2 19/22 Linfeng_20130204_CTCF_6.raw High TSQNSELNNMQDLVEDYKK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 291 3.31 0.00 1 10 48 3 752.68488 2256.04007 -2.16 47.46 3654 3654 MS2 21/72 Linfeng_20130204_CTCF_6.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 556 3.31 0.00 0 20 50 2 738.39709 1475.78691 1.08 36.51 2730 2730 MS2 13/22 Linfeng_20130204_CTCF_9.raw High YEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 501 3.31 0.00 0 8 45 2 597.31268 1193.61809 1.65 37.44 2798 2798 MS2 17/18 Linfeng_20130204_CTCF_7.raw High YEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 535 3.31 0.00 0 8 50 2 597.31171 1193.61614 0.01 35.86 2787 2787 MS2 17/18 Linfeng_20130204_CTCF_1.raw High GGSGGGGSISGGGYGSGGGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 106 3.30 0.00 0 0 50 2 871.37866 1741.75005 0.86 25.05 1365 1365 MS2 18/44 Linfeng_20130204_CTCF_6.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 370 3.30 0.00 0 1 9 2 632.35095 1263.69463 0.19 50.48 4784 4784 MS2 18/20 Linfeng_20130201_rIgG_10.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 369 3.29 0.00 0 13 50 2 632.35126 1263.69524 0.68 50.66 3993 3993 MS2 18/20 Linfeng_20130204_CTCF_6.raw High AAFGGSGGRGSSSGGGYSSGSSSYGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 89 3.29 0.00 1 74 50 3 834.36017 2501.06595 -0.55 23.82 1891 1891 MS2 26/112 Linfeng_20130201_rIgG_3.raw High YEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 510 3.29 0.00 0 13 15 2 597.31238 1193.61748 1.14 37.29 2571 2571 MS2 17/18 Linfeng_20130204_CTCF_6.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 373 3.29 0.00 0 6 18 2 632.35089 1263.69451 0.10 50.14 4276 4276 MS2 17/20 Linfeng_20130204_CTCF_1.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 412 3.29 0.00 0 4 50 2 632.35089 1263.69451 0.10 51.23 4389 4389 MS2 18/20 Linfeng_20130204_CTCF_1.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 126 3.29 0.00 0 0 50 3 440.86548 1320.58188 -0.78 28.18 2422 2422 MS2 28/60 Linfeng_20130201_rIgG_9.raw High GFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 349 3.28 0.00 0 34 50 2 627.80713 1254.60698 -0.31 26.61 2204 2204 MS2 18/26 Linfeng_20130201_rIgG_2.raw High TSQNSELNNmQDLVEDYK Unambiguous 1 1 P35908 M10(Oxidation) CID 1.0000 0.0000 1 1 184 3.28 0.00 0 20 50 3 715.31848 2143.94089 -1.87 37.32 3334 3334 MS2 24/68 Linfeng_20130201_rIgG_3.raw High YEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 550 3.27 0.00 0 6 50 2 597.31201 1193.61675 0.52 36.01 2757 2757 MS2 17/18 Linfeng_20130204_CTCF_2.raw High TSQNSELNNMQDLVEDYKK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 315 3.26 0.00 1 7 9 3 752.68585 2256.04300 -0.86 46.71 4332 4332 MS2 24/72 Linfeng_20130201_rIgG_10.raw High TSQNSELNNmQDLVEDYK Unambiguous 1 1 P35908 M10(Oxidation) CID 1.0000 0.0000 1 1 195 3.25 0.00 0 7 50 3 715.32019 2143.94602 0.52 37.37 3323 3323 MS2 24/68 Linfeng_20130201_rIgG_4.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 404 3.24 0.00 0 9 28 2 632.35107 1263.69487 0.39 50.67 4337 4337 MS2 17/20 Linfeng_20130204_CTCF_8.raw High LLRDYQELmNVK Unambiguous 5 1 P35908 M9(Oxidation) CID 1.0000 0.0000 1 1 461 3.24 0.00 1 19 50 2 769.40509 1537.80290 -0.94 36.65 2688 2688 MS2 13/22 Linfeng_20130204_CTCF_10.raw High QSGSRGGSGGGGSISGGGYGSGGGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 167 3.23 0.00 1 0 50 3 753.00385 2256.99698 1.42 17.93 1104 1104 MS2 23/108 Linfeng_20130201_rIgG_3.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 115 3.23 0.00 0 0 50 2 660.79437 1320.58147 -1.09 28.22 2450 2450 MS2 18/30 Linfeng_20130201_rIgG_6.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 391 3.23 0.00 0 9 21 2 632.35101 1263.69475 0.29 50.32 4757 4757 MS2 18/20 Linfeng_20130201_rIgG_4.raw High QSGSRGGSGGGGSISGGGYGSGGGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 159 3.23 0.00 1 0 50 3 753.00336 2256.99552 0.77 17.85 1093 1093 MS2 27/108 Linfeng_20130201_rIgG_3.raw High AAFGGSGGRGSSSGGGYSSGSSSYGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 98 3.22 0.00 1 0 50 3 834.36255 2501.07309 2.31 24.69 1979 1979 MS2 30/112 Linfeng_20130201_rIgG_2.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 125 3.22 0.00 0 3 50 3 440.86530 1320.58133 -1.20 28.22 2412 2412 MS2 29/60 Linfeng_20130201_rIgG_3.raw High LLRDYQELmNVK Unambiguous 5 1 P35908 M9(Oxidation) CID 1.0000 0.0000 1 1 483 3.22 0.00 1 6 50 2 769.40430 1537.80132 -1.98 35.96 2752 2752 MS2 16/22 Linfeng_20130204_CTCF_2.raw High YEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 551 3.22 0.00 0 11 50 2 597.31158 1193.61589 -0.19 36.88 2890 2890 MS2 17/18 Linfeng_20130204_CTCF_1.raw High GSSSGGGYSSGSSSYGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 34 3.21 0.00 0 0 50 2 870.85699 1740.70671 0.62 18.85 1190 1190 MS2 22/38 Linfeng_20130201_rIgG_5.raw High LNDLEEALQQAK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 480 3.21 0.00 0 18 50 2 686.36121 1371.71514 2.65 46.92 3820 3820 MS2 16/22 Linfeng_20130204_CTCF_9.raw High LLRDYQELmNVK Unambiguous 5 1 P35908 M9(Oxidation) CID 1.0000 0.0000 1 1 448 3.21 0.00 1 10 50 2 769.40509 1537.80290 -0.94 35.99 3202 3202 MS2 18/22 Linfeng_20130201_rIgG_10.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 131 3.20 0.00 0 56 50 3 440.86493 1320.58023 -2.03 27.25 2123 2123 MS2 24/60 Linfeng_20130201_rIgG_5.raw High YEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 451 3.20 0.00 0 23 50 2 597.31091 1193.61455 -1.32 37.43 2824 2824 MS2 17/18 Linfeng_20130204_CTCF_9.raw High GSSSGGGYSSGSSSYGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 45 3.20 0.00 0 0 50 2 870.85846 1740.70964 2.30 18.89 1212 1212 MS2 20/38 Linfeng_20130201_rIgG_4.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 125 3.20 0.00 0 11 50 3 440.86517 1320.58097 -1.47 27.39 2311 2311 MS2 25/60 Linfeng_20130201_rIgG_1.raw High GFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 345 3.20 0.00 0 26 50 2 627.80676 1254.60625 -0.89 26.17 1718 1718 MS2 20/26 Linfeng_20130204_CTCF_2.raw High LLRDYQELMNVK Unambiguous 5 1 P35908 CID 1.0000 0.0000 1 1 486 3.20 0.00 1 51 50 2 761.41003 1521.81279 2.20 44.83 3378 3378 MS2 17/22 Linfeng_20130204_CTCF_6.raw High WELLQQmNVGTR Unambiguous 1 1 P35908 M7(Oxidation) CID 1.0000 0.0000 1 1 504 3.19 0.00 0 36 30 2 745.87451 1490.74175 -0.23 44.36 4104 4104 MS2 19/22 Linfeng_20130201_rIgG_1.raw High SKEEAEALYHSK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 469 3.19 0.00 1 10 50 2 696.34570 1391.68413 2.84 20.84 1509 1509 MS2 18/22 Linfeng_20130201_rIgG_6.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 412 3.19 0.00 0 16 20 2 632.35083 1263.69438 0.00 51.10 4927 4927 MS2 18/20 Linfeng_20130201_rIgG_1.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 384 3.19 0.00 0 0 28 2 632.35083 1263.69438 0.00 50.46 4287 4287 MS2 18/20 Linfeng_20130204_CTCF_2.raw High GSSSGGGYSSGSSSYGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 32 3.18 0.00 0 0 50 2 870.85681 1740.70635 0.41 19.05 1267 1267 MS2 23/38 Linfeng_20130201_rIgG_6.raw High LLRDYQELmNVK Unambiguous 5 1 P35908 M9(Oxidation) CID 1.0000 0.0000 1 1 462 3.18 0.00 1 19 50 3 513.27252 1537.80301 -0.87 35.94 3291 3291 MS2 20/44 Linfeng_20130201_rIgG_7.raw High GSSSGGGYSSGSSSYGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 37 3.18 0.00 0 0 50 2 870.85748 1740.70769 1.18 18.53 1148 1148 MS2 21/38 Linfeng_20130201_rIgG_5.raw High SKEEAEALYHSKYEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 513 3.18 0.00 2 36 50 4 642.32251 2566.26821 -3.99 39.79 3632 3632 MS2 36/126 Linfeng_20130201_rIgG_6.raw High YEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 517 3.17 0.00 0 13 42 2 597.31238 1193.61748 1.14 37.37 3384 3384 MS2 17/18 Linfeng_20130201_rIgG_6.raw High YEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 451 3.17 0.00 0 20 50 2 597.31073 1193.61418 -1.62 36.60 2683 2683 MS2 17/18 Linfeng_20130204_CTCF_10.raw High NVQDAIADAEQR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 342 3.17 0.00 0 16 50 2 665.32294 1329.63860 -0.60 36.03 3204 3204 MS2 19/22 Linfeng_20130201_rIgG_3.raw High AAFGGSGGRGSSSGGGYSSGSSSYGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 90 3.17 0.00 1 0 50 3 834.36005 2501.06559 -0.69 23.94 1782 1782 MS2 28/112 Linfeng_20130201_rIgG_5.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 369 3.16 0.00 0 3 15 2 632.35052 1263.69377 -0.48 50.69 4239 4239 MS2 18/20 Linfeng_20130204_CTCF_7.raw High YEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 548 3.16 0.00 0 17 43 2 597.31195 1193.61662 0.42 37.46 2794 2794 MS2 17/18 Linfeng_20130204_CTCF_8.raw High TSQNSELNNmQDLVEDYKK Unambiguous 1 1 P35908 M10(Oxidation) CID 1.0000 0.0000 1 1 310 3.15 0.00 1 0 50 3 758.01843 2272.04074 0.39 32.94 2944 2944 MS2 26/72 Linfeng_20130201_rIgG_6.raw High LLRDYQELMNVK Unambiguous 5 1 P35908 CID 1.0000 0.0000 1 1 479 3.15 0.00 1 15 50 3 507.94089 1521.80811 -0.88 43.91 4054 4054 MS2 20/44 Linfeng_20130201_rIgG_1.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 368 3.14 0.00 1 8 3 2 541.80359 1082.59990 0.50 38.24 3272 3272 MS2 15/16 Linfeng_20130201_rIgG_5.raw High DVDNAYmIKVELQSK Unambiguous 1 1 P35908 M7(Oxidation) CID 1.0000 0.0000 1 1 467 3.14 0.00 1 0 50 2 884.94305 1768.87883 0.10 40.18 3620 3620 MS2 16/28 Linfeng_20130201_rIgG_2.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 360 3.13 0.00 0 5 50 2 632.35236 1263.69744 2.42 50.69 3979 3979 MS2 18/20 Linfeng_20130204_CTCF_4.raw High GSSSGGGYSSGSSSYGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 42 3.13 0.00 0 0 50 2 870.85889 1740.71050 2.80 18.71 701 701 MS2 18/38 Linfeng_20130204_CTCF_6.raw High LLRDYQELmNVK Unambiguous 5 1 P35908 M9(Oxidation) CID 1.0000 0.0000 1 1 483 3.13 0.00 1 10 50 3 513.27191 1537.80118 -2.06 35.35 3152 3152 MS2 20/44 Linfeng_20130201_rIgG_1.raw High GSSSGGGYSSGSSSYGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 31 3.13 0.00 0 0 50 2 870.85632 1740.70537 -0.15 18.81 779 779 MS2 21/38 Linfeng_20130204_CTCF_1.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 460 3.12 0.00 0 27 25 3 613.64227 1838.91227 -1.22 48.92 4583 4583 MS2 26/84 Linfeng_20130201_rIgG_4.raw High NVQDAIADAEQR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 327 3.12 0.00 0 24 50 2 665.32373 1329.64018 0.59 35.26 2727 2727 MS2 19/22 Linfeng_20130204_CTCF_1.raw High LLRDYQELmNVK Unambiguous 5 1 P35908 M9(Oxidation) CID 1.0000 0.0000 1 1 462 3.12 0.00 1 35 50 3 513.27240 1537.80265 -1.11 36.03 3171 3171 MS2 20/44 Linfeng_20130201_rIgG_8.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 128 3.12 0.00 0 17 50 3 440.86526 1320.58124 -1.26 27.98 2381 2381 MS2 30/60 Linfeng_20130201_rIgG_2.raw High YLDGLTAER Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 376 3.11 0.00 0 15 50 2 519.26648 1037.52568 -0.54 36.26 2483 2483 MS2 14/16 Linfeng_20130204_CTCF_4.raw High NVQDAIADAEQR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 313 3.11 0.00 0 18 50 2 665.32404 1329.64079 1.05 35.27 2585 2585 MS2 19/22 Linfeng_20130204_CTCF_7.raw High LLRDYQELMNVK Unambiguous 5 1 P35908 CID 1.0000 0.0000 1 1 453 3.10 0.00 1 4 12 3 507.94193 1521.81122 1.17 44.69 3363 3363 MS2 16/44 Linfeng_20130204_CTCF_6.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 140 3.10 0.00 0 8 50 2 660.79547 1320.58367 0.57 27.32 2289 2289 MS2 19/30 Linfeng_20130201_rIgG_4.raw High mSGDLSSNVTVSVTSSTISSNVASK Unambiguous 1 1 P35908 M1(Oxidation) CID 1.0000 0.0000 1 1 460 3.10 0.00 0 17 50 3 825.40424 2474.19815 2.18 42.39 3310 3310 MS2 21/96 Linfeng_20130204_CTCF_7.raw High LLRDYQELMNVK Unambiguous 5 1 P35908 CID 1.0000 0.0000 1 1 490 3.09 0.00 1 13 35 3 507.94131 1521.80939 -0.03 44.52 3631 3631 MS2 18/44 Linfeng_20130204_CTCF_2.raw High GGSSSGGGYGSGGGGSSSVK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 92 3.08 0.00 0 0 50 2 794.84467 1588.68205 -0.89 16.73 947 947 MS2 17/38 Linfeng_20130201_rIgG_6.raw High TSQNSELNNmQDLVEDYK Unambiguous 1 1 P35908 M10(Oxidation) CID 1.0000 0.0000 1 1 213 3.08 0.00 0 33 50 3 715.32104 2143.94858 1.72 37.16 2918 2918 MS2 23/68 Linfeng_20130204_CTCF_1.raw High YEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 527 3.08 0.00 0 10 50 2 597.31207 1193.61687 0.63 37.59 2621 2621 MS2 16/18 Linfeng_20130204_CTCF_3.raw High YEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 505 3.07 0.00 0 11 50 2 597.31171 1193.61614 0.01 36.30 2487 2487 MS2 15/18 Linfeng_20130204_CTCF_4.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 338 3.07 0.00 0 13 50 2 632.35077 1263.69426 -0.09 50.61 3969 3969 MS2 18/20 Linfeng_20130204_CTCF_3.raw High YEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 560 3.07 0.00 0 9 50 2 597.31189 1193.61650 0.32 36.80 3282 3282 MS2 17/18 Linfeng_20130201_rIgG_3.raw High LLRDYQELmNVK Unambiguous 5 1 P35908 M9(Oxidation) CID 1.0000 0.0000 1 1 474 3.07 0.00 1 3 50 3 513.27216 1537.80191 -1.59 35.87 3190 3190 MS2 20/44 Linfeng_20130201_rIgG_10.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 442 3.07 0.00 0 2 50 2 554.27460 1107.54192 -0.93 25.34 1393 1393 MS2 14/16 Linfeng_20130204_CTCF_6.raw High TSQNSELNNMQDLVEDYKK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 306 3.06 0.00 1 4 4 3 752.68597 2256.04337 -0.70 46.32 4332 4332 MS2 26/72 Linfeng_20130201_rIgG_1.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 137 3.06 0.00 0 0 50 2 660.79608 1320.58489 1.50 27.74 2440 2440 MS2 19/30 Linfeng_20130201_rIgG_7.raw High GGSGGGGSISGGGYGSGGGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 112 3.05 0.00 0 0 50 2 871.38043 1741.75359 2.89 19.93 1352 1352 MS2 17/44 Linfeng_20130201_rIgG_4.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 311 3.05 0.00 1 21 50 2 541.80347 1082.59966 0.27 38.69 3473 3473 MS2 15/16 Linfeng_20130201_rIgG_3.raw High SKEEAEALYHSK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 480 3.05 0.00 1 46 50 3 464.56464 1391.67936 -0.59 21.10 1505 1505 MS2 22/44 Linfeng_20130201_rIgG_4.raw High mSGDLSSNVTVSVTSSTISSNVASK Unambiguous 1 1 P35908 M1(Oxidation) CID 1.0000 0.0000 1 1 454 3.05 0.00 0 0 50 3 825.40240 2474.19266 -0.04 42.59 3356 3356 MS2 23/96 Linfeng_20130204_CTCF_9.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 389 3.05 0.00 0 4 9 2 632.35114 1263.69499 0.48 50.37 4753 4753 MS2 18/20 Linfeng_20130201_rIgG_3.raw High YLDGLTAER Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 415 3.05 0.00 0 30 50 2 519.26587 1037.52446 -1.72 36.11 3196 3196 MS2 14/16 Linfeng_20130201_rIgG_4.raw High TSQNSELNNMQDLVEDYKK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 312 3.05 0.00 1 10 7 3 752.68573 2256.04264 -1.03 46.54 4282 4282 MS2 28/72 Linfeng_20130201_rIgG_2.raw High TSQNSELNNmQDLVEDYKK Unambiguous 1 1 P35908 M10(Oxidation) CID 1.0000 0.0000 1 1 313 3.04 0.00 1 0 50 3 758.01892 2272.04221 1.03 32.40 2859 2859 MS2 26/72 Linfeng_20130201_rIgG_1.raw High GGSGGGGSISGGGYGSGGGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 104 3.04 0.00 0 0 50 2 871.37897 1741.75066 1.21 19.78 1354 1354 MS2 14/44 Linfeng_20130201_rIgG_10.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 343 3.04 0.00 1 56 50 2 541.80585 1082.60442 4.67 39.54 2816 2816 MS2 13/16 Linfeng_20130204_CTCF_4.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 518 3.04 0.00 0 0 50 2 738.39722 1475.78716 1.24 34.44 2483 2483 MS2 15/22 Linfeng_20130204_CTCF_8.raw High SKEEAEALYHSKYEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 486 3.04 0.00 2 19 15 4 642.32507 2566.27846 0.00 39.55 3442 3442 MS2 38/126 Linfeng_20130201_rIgG_5.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 148 3.04 0.00 0 0 50 3 440.86606 1320.58362 0.54 26.42 1497 1497 MS2 23/60 Linfeng_20130204_CTCF_6.raw High LLRDYQELmNVK Unambiguous 5 1 P35908 M9(Oxidation) CID 1.0000 0.0000 1 1 455 3.03 0.00 1 31 50 2 769.40649 1537.80571 0.88 36.16 3230 3230 MS2 14/22 Linfeng_20130201_rIgG_9.raw High GGGGGGFRGFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 410 3.03 0.00 1 14 50 3 633.97357 1899.90616 0.23 34.76 3072 3072 MS2 26/84 Linfeng_20130201_rIgG_2.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 366 3.02 0.00 1 17 36 2 541.80377 1082.60027 0.84 38.78 3468 3468 MS2 15/16 Linfeng_20130201_rIgG_4.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 114 3.02 0.00 0 55 50 2 660.79517 1320.58306 0.11 28.76 2455 2455 MS2 19/30 Linfeng_20130201_rIgG_4.raw High LLRDYQELMNVK Unambiguous 5 1 P35908 CID 1.0000 0.0000 1 1 481 3.02 0.00 1 0 35 3 507.94113 1521.80884 -0.39 44.45 4168 4168 MS2 21/44 Linfeng_20130201_rIgG_7.raw High GGSGGGGSISGGGYGSGGGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 105 3.02 0.00 0 13 50 2 871.37872 1741.75017 0.93 27.86 1636 1636 MS2 16/44 Linfeng_20130204_CTCF_6.raw High YEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 521 3.02 0.00 0 17 50 2 597.31238 1193.61748 1.14 36.15 2477 2477 MS2 16/18 Linfeng_20130204_CTCF_3.raw High SKEEAEALYHSKYEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 495 3.02 0.00 2 15 39 4 642.32397 2566.27407 -1.71 40.77 3241 3241 MS2 32/126 Linfeng_20130204_CTCF_2.raw High LALDVEIATYRK Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 301 3.02 0.00 1 25 23 2 696.39807 1391.78887 -0.35 44.32 4037 4037 MS2 17/22 Linfeng_20130201_rIgG_5.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 138 3.02 0.00 0 0 50 3 440.86584 1320.58298 0.05 28.20 1669 1669 MS2 24/60 Linfeng_20130204_CTCF_6.raw High NVQDAIADAEQR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 337 3.01 0.00 0 8 50 2 665.32306 1329.63884 -0.42 35.03 2660 2660 MS2 19/22 Linfeng_20130204_CTCF_2.raw High SKEEAEALYHSK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 479 3.01 0.00 1 44 50 3 464.56430 1391.67835 -1.32 20.37 1422 1422 MS2 21/44 Linfeng_20130201_rIgG_2.raw High NVQDAIADAEQR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 339 3.01 0.00 0 0 50 2 665.32275 1329.63823 -0.88 34.83 2684 2684 MS2 19/22 Linfeng_20130204_CTCF_1.raw High GGSGGGGSISGGGYGSGGGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 107 3.01 0.00 0 0 50 2 871.37903 1741.75078 1.28 19.63 1326 1326 MS2 17/44 Linfeng_20130201_rIgG_2.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 430 3.00 0.00 0 11 18 2 919.96844 1838.92961 8.21 49.65 4210 4210 MS2 15/42 Linfeng_20130204_CTCF_8.raw High GSSSGGGYSSGSSSYGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 29 3.00 0.00 0 14 50 2 870.85657 1740.70586 0.13 19.06 739 739 MS2 22/38 Linfeng_20130204_CTCF_6.raw High TSQNSELNNmQDLVEDYKK Unambiguous 1 1 P35908 M10(Oxidation) CID 1.0000 0.0000 1 1 303 3.00 0.00 1 1 22 3 758.01807 2272.03965 -0.10 33.15 2154 2154 MS2 21/72 Linfeng_20130204_CTCF_6.raw High TSQNSELNNmQDLVEDYKK Unambiguous 1 1 P35908 M10(Oxidation) CID 1.0000 0.0000 1 1 291 3.00 0.00 1 10 50 3 758.01788 2272.03910 -0.34 32.88 2990 2990 MS2 25/72 Linfeng_20130201_rIgG_7.raw High LLRDYQELmNVK Unambiguous 5 1 P35908 M9(Oxidation) CID 1.0000 0.0000 1 1 479 2.99 0.00 1 8 50 3 513.27301 1537.80448 0.08 36.41 2696 2696 MS2 21/44 Linfeng_20130204_CTCF_7.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 136 2.98 0.00 0 7 50 2 660.79559 1320.58391 0.76 27.26 1872 1872 MS2 17/30 Linfeng_20130204_CTCF_1.raw High SKEEAEALYHSK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 460 2.98 0.00 1 42 50 3 464.56476 1391.67972 -0.33 20.59 1438 1438 MS2 23/44 Linfeng_20130201_rIgG_4.raw High LLRDYQELmNVK Unambiguous 5 1 P35908 M9(Oxidation) CID 1.0000 0.0000 1 1 450 2.98 0.00 1 28 50 2 769.40533 1537.80339 -0.63 35.51 3145 3145 MS2 16/22 Linfeng_20130201_rIgG_2.raw High YEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 464 2.97 0.00 0 11 50 2 597.31128 1193.61528 -0.70 36.38 2717 2717 MS2 17/18 Linfeng_20130204_CTCF_9.raw High YLDGLTAER Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 416 2.97 0.00 0 14 50 2 519.26630 1037.52532 -0.89 35.80 3181 3181 MS2 14/16 Linfeng_20130201_rIgG_3.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 428 2.97 0.00 0 5 50 2 919.95770 1838.90813 -3.47 52.35 4498 4498 MS2 19/42 Linfeng_20130204_CTCF_1.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 110 2.97 0.00 0 0 50 2 660.79504 1320.58281 -0.08 28.21 2409 2409 MS2 17/30 Linfeng_20130201_rIgG_2.raw High NVQDAIADAEQR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 302 2.96 0.00 0 9 50 2 665.32343 1329.63957 0.13 34.99 3084 3084 MS2 19/22 Linfeng_20130201_rIgG_4.raw High YEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 526 2.96 0.00 0 7 30 2 597.31171 1193.61614 0.01 37.20 3322 3322 MS2 16/18 Linfeng_20130201_rIgG_3.raw High GGSSSGGGYGSGGGGSSSVK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 95 2.96 0.00 0 0 50 2 794.84625 1588.68523 1.11 16.72 942 942 MS2 19/38 Linfeng_20130201_rIgG_3.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 442 2.96 0.00 0 7 50 2 554.27441 1107.54155 -1.26 26.19 1475 1475 MS2 14/16 Linfeng_20130204_CTCF_6.raw High GFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 330 2.95 0.00 0 38 50 2 627.80774 1254.60820 0.66 26.43 1775 1775 MS2 16/26 Linfeng_20130204_CTCF_1.raw High LLRDYQELMNVK Unambiguous 5 1 P35908 CID 1.0000 0.0000 1 1 480 2.95 0.00 1 4 47 3 507.94217 1521.81195 1.65 45.20 3598 3598 MS2 18/44 Linfeng_20130204_CTCF_10.raw High TSQNSELNNmQDLVEDYKK Unambiguous 1 1 P35908 M10(Oxidation) CID 1.0000 0.0000 1 1 338 2.95 0.00 1 0 50 3 758.01941 2272.04367 1.68 32.84 2676 2676 MS2 27/72 Linfeng_20130201_rIgG_5.raw High GSSSGGGYSSGSSSYGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 35 2.95 0.00 0 9 50 2 870.85699 1740.70671 0.62 19.04 1273 1273 MS2 22/38 Linfeng_20130201_rIgG_7.raw High TSQNSELNNmQDLVEDYKK Unambiguous 1 1 P35908 M10(Oxidation) CID 1.0000 0.0000 1 1 291 2.94 0.00 1 4 50 3 758.01764 2272.03836 -0.66 32.73 2876 2876 MS2 24/72 Linfeng_20130201_rIgG_3.raw High YLDGLTAER Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 403 2.94 0.00 0 19 50 2 519.26581 1037.52434 -1.83 35.62 2763 2763 MS2 14/16 Linfeng_20130204_CTCF_1.raw High YEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 516 2.94 0.00 0 16 23 2 597.31213 1193.61699 0.73 36.92 3310 3310 MS2 17/18 Linfeng_20130201_rIgG_1.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 116 2.94 0.00 0 5 50 2 660.79474 1320.58220 -0.54 28.14 2416 2416 MS2 22/30 Linfeng_20130201_rIgG_9.raw High LLRDYQELmNVK Unambiguous 5 1 P35908 M9(Oxidation) CID 1.0000 0.0000 1 1 437 2.92 0.00 1 7 50 3 513.27368 1537.80649 1.39 36.13 2454 2454 MS2 17/44 Linfeng_20130204_CTCF_6.raw High DYQELMNVK Unambiguous 5 1 P35908 CID 1.0000 0.0000 1 1 338 2.92 0.00 0 22 40 2 570.27374 1139.54021 0.02 39.93 3055 3055 MS2 14/16 Linfeng_20130204_CTCF_7.raw High NLDLDSIIAEVK Unambiguous 13 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 586 2.92 0.00 0 22 40 2 665.36633 1329.72539 -0.53 50.96 4023 4023 MS2 18/22 Linfeng_20130204_CTCF_6.raw High YEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 512 2.92 0.00 0 11 50 2 597.31268 1193.61809 1.65 36.34 2689 2689 MS2 17/18 Linfeng_20130204_CTCF_7.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 361 2.92 0.00 0 4 50 2 632.35059 1263.69390 -0.38 50.96 4291 4291 MS2 17/20 Linfeng_20130204_CTCF_9.raw High LLRDYQELmNVK Unambiguous 5 1 P35908 M9(Oxidation) CID 1.0000 0.0000 1 1 471 2.92 0.00 1 14 50 3 513.27222 1537.80210 -1.47 35.34 3129 3129 MS2 20/44 Linfeng_20130201_rIgG_2.raw High YLDGLTAER Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 442 2.92 0.00 0 32 50 2 519.26465 1037.52202 -4.07 36.42 2665 2665 MS2 14/16 Linfeng_20130204_CTCF_10.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 352 2.92 0.00 1 19 50 2 541.80304 1082.59880 -0.52 38.29 3426 3426 MS2 15/16 Linfeng_20130201_rIgG_2.raw High GGGGGGFRGFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 393 2.92 0.00 1 17 50 3 633.97296 1899.90433 -0.74 35.21 3106 3106 MS2 27/84 Linfeng_20130201_rIgG_4.raw High TSQNSELNNMQDLVEDYKK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 289 2.91 0.00 1 24 21 3 752.68433 2256.03843 -2.89 46.77 3869 3869 MS2 20/72 Linfeng_20130204_CTCF_2.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 410 2.90 0.00 0 0 50 2 919.95941 1838.91155 -1.61 58.40 4854 4854 MS2 16/42 Linfeng_20130204_CTCF_4.raw High TSQNSELNNMQDLVEDYKK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 314 2.90 0.00 1 8 19 3 752.68579 2256.04282 -0.94 47.36 3836 3836 MS2 21/72 Linfeng_20130204_CTCF_10.raw High YEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 525 2.90 0.00 0 24 50 2 597.31238 1193.61748 1.14 36.88 2550 2550 MS2 16/18 Linfeng_20130204_CTCF_3.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 429 2.90 0.00 0 28 8 2 632.35022 1263.69316 -0.96 50.11 4779 4779 MS2 18/20 Linfeng_20130201_rIgG_5.raw High YEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 557 2.90 0.00 0 23 50 2 597.31171 1193.61614 0.01 37.18 3290 3290 MS2 16/18 Linfeng_20130201_rIgG_8.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 330 2.90 0.00 1 11 50 2 541.80341 1082.59953 0.16 38.46 3467 3467 MS2 15/16 Linfeng_20130201_rIgG_1.raw High NVQDAIADAEQR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 321 2.90 0.00 0 11 50 2 665.32336 1329.63945 0.04 35.17 2380 2380 MS2 19/22 Linfeng_20130204_CTCF_3.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 129 2.90 0.00 0 10 50 2 660.79535 1320.58342 0.39 27.41 2294 2294 MS2 19/30 Linfeng_20130201_rIgG_8.raw High YEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 540 2.90 0.00 0 10 50 2 597.31213 1193.61699 0.73 35.71 3188 3188 MS2 17/18 Linfeng_20130201_rIgG_1.raw High NVQDAIADAEQR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 327 2.89 0.00 0 0 50 2 665.32245 1329.63762 -1.34 34.94 3095 3095 MS2 19/22 Linfeng_20130201_rIgG_3.raw High LALDVEIATYRK Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 297 2.89 0.00 1 40 50 2 696.39825 1391.78923 -0.09 44.41 4063 4063 MS2 17/22 Linfeng_20130201_rIgG_4.raw High YEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 547 2.89 0.00 0 7 40 2 597.31183 1193.61638 0.22 36.05 3190 3190 MS2 17/18 Linfeng_20130201_rIgG_4.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 128 2.89 0.00 0 48 50 3 440.86536 1320.58152 -1.06 29.43 2562 2562 MS2 23/60 Linfeng_20130201_rIgG_9.raw High TSQNSELNNmQDLVEDYKK Unambiguous 1 1 P35908 M10(Oxidation) CID 1.0000 0.0000 1 1 310 2.89 0.00 1 3 50 3 758.01831 2272.04038 0.23 32.82 2898 2898 MS2 25/72 Linfeng_20130201_rIgG_9.raw High GGSSSGGGYGSGGGGSSSVK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 110 2.89 0.00 0 0 50 2 794.84558 1588.68389 0.27 16.64 924 924 MS2 17/38 Linfeng_20130201_rIgG_9.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 126 2.88 0.00 0 14 50 3 440.86545 1320.58179 -0.85 28.31 2430 2430 MS2 22/60 Linfeng_20130201_rIgG_10.raw High WELLQQmNVGTR Unambiguous 1 1 P35908 M7(Oxidation) CID 1.0000 0.0000 1 1 501 2.88 0.00 0 27 50 2 745.87463 1490.74199 -0.07 44.65 4097 4097 MS2 19/22 Linfeng_20130201_rIgG_3.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 132 2.88 0.00 0 0 50 3 440.86493 1320.58023 -2.03 29.57 2544 2544 MS2 24/60 Linfeng_20130201_rIgG_4.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 391 2.88 0.00 0 4 27 2 632.35120 1263.69512 0.58 50.42 4851 4851 MS2 18/20 Linfeng_20130201_rIgG_7.raw High GGGGGGFRGFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 343 2.87 0.00 1 0 50 2 950.45575 1899.90422 -0.79 34.23 3020 3020 MS2 19/42 Linfeng_20130201_rIgG_2.raw High NVQDAIADAEQR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 335 2.87 0.00 0 13 50 2 665.32129 1329.63530 -3.08 35.80 3226 3226 MS2 18/22 Linfeng_20130201_rIgG_6.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 458 2.86 0.00 0 20 19 3 613.64240 1838.91263 -1.02 49.06 4043 4043 MS2 24/84 Linfeng_20130204_CTCF_7.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 413 2.86 0.00 0 16 50 2 632.35260 1263.69792 2.80 51.92 4119 4119 MS2 16/20 Linfeng_20130204_CTCF_6.raw High TSQNSELNNMQDLVEDYKK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 351 2.86 0.00 1 5 11 3 752.68817 2256.04996 2.22 47.05 3836 3836 MS2 25/72 Linfeng_20130204_CTCF_9.raw High NVQDAIADAEQR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 330 2.85 0.00 0 28 50 2 665.32257 1329.63786 -1.16 35.83 2784 2784 MS2 19/22 Linfeng_20130204_CTCF_1.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 438 2.85 0.00 0 18 16 2 919.96106 1838.91484 0.18 49.18 4656 4656 MS2 23/42 Linfeng_20130201_rIgG_5.raw Medium SKEEAEALYHSKYEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 493 2.85 0.00 2 32 47 4 642.32440 2566.27578 -1.05 40.06 3604 3604 MS2 29/126 Linfeng_20130201_rIgG_4.raw High GFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 364 2.85 0.00 0 40 50 2 627.80786 1254.60845 0.86 26.94 1806 1806 MS2 18/26 Linfeng_20130204_CTCF_2.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 125 2.84 0.00 0 31 50 3 440.86499 1320.58042 -1.89 27.23 2287 2287 MS2 27/60 Linfeng_20130201_rIgG_3.raw High GGGGGGFRGFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 393 2.84 0.00 1 25 50 3 633.97296 1899.90433 -0.74 34.35 3134 3134 MS2 21/84 Linfeng_20130201_rIgG_7.raw High SKEEAEALYHSKYEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 480 2.84 0.00 2 10 50 3 856.09979 2566.28482 2.48 39.78 3044 3044 MS2 18/84 Linfeng_20130204_CTCF_8.raw High GGGGGGFRGFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 394 2.84 0.00 1 21 50 3 633.97388 1899.90708 0.71 34.06 2608 2608 MS2 22/84 Linfeng_20130204_CTCF_1.raw High LLRDYQELmNVK Unambiguous 5 1 P35908 M9(Oxidation) CID 1.0000 0.0000 1 1 468 2.84 0.00 1 11 50 2 769.40601 1537.80474 0.25 35.97 3198 3198 MS2 15/22 Linfeng_20130201_rIgG_3.raw High YEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 518 2.83 0.00 0 23 50 2 597.31232 1193.61736 1.04 36.71 3368 3368 MS2 17/18 Linfeng_20130201_rIgG_7.raw High NVQDAIADAEQR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 310 2.83 0.00 0 0 50 2 665.32355 1329.63982 0.31 35.07 3205 3205 MS2 19/22 Linfeng_20130201_rIgG_7.raw High NVQDAIADAEQR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 337 2.83 0.00 0 0 50 2 665.32300 1329.63872 -0.51 35.19 3166 3166 MS2 19/22 Linfeng_20130201_rIgG_6.raw High TSQNSELNNmQDLVEDYKK Unambiguous 1 1 P35908 M10(Oxidation) CID 1.0000 0.0000 1 1 290 2.83 0.00 1 0 41 3 758.01770 2272.03855 -0.58 32.72 2880 2880 MS2 24/72 Linfeng_20130201_rIgG_10.raw High YEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 552 2.83 0.00 0 21 50 2 597.31213 1193.61699 0.73 36.45 3214 3214 MS2 16/18 Linfeng_20130201_rIgG_8.raw High TSQNSELNNmQDLVEDYKK Unambiguous 1 1 P35908 M10(Oxidation) CID 1.0000 0.0000 1 1 265 2.83 0.00 1 0 50 2 1136.52283 2272.03838 -0.66 32.84 2486 2486 MS2 16/36 Linfeng_20130204_CTCF_1.raw High LLRDYQELmNVK Unambiguous 5 1 P35908 M9(Oxidation) CID 1.0000 0.0000 1 1 483 2.82 0.00 1 15 50 3 513.27191 1537.80118 -2.06 36.19 3265 3265 MS2 17/44 Linfeng_20130201_rIgG_6.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 471 2.82 0.00 0 25 31 3 613.64331 1838.91538 0.47 49.02 3815 3815 MS2 27/84 Linfeng_20130204_CTCF_6.raw High YEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 552 2.81 0.00 0 27 50 2 597.31201 1193.61675 0.52 37.18 3321 3321 MS2 17/18 Linfeng_20130201_rIgG_10.raw High YLDGLTAER Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 419 2.81 0.00 0 18 50 2 519.26599 1037.52471 -1.48 36.35 3221 3221 MS2 14/16 Linfeng_20130201_rIgG_4.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 325 2.81 0.00 1 10 50 2 541.80310 1082.59892 -0.40 38.88 3045 3045 MS2 15/16 Linfeng_20130204_CTCF_2.raw High GGSGGGGSISGGGYGSGGGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 110 2.81 0.00 0 28 50 2 871.38135 1741.75542 3.94 23.85 1248 1248 MS2 17/44 Linfeng_20130204_CTCF_6.raw High TSQNSELNNmQDLVEDYKK Unambiguous 1 1 P35908 M10(Oxidation) CID 1.0000 0.0000 1 1 302 2.81 0.00 1 0 50 3 758.01807 2272.03965 -0.10 32.75 2862 2862 MS2 29/72 Linfeng_20130201_rIgG_4.raw High GGSSSGGGYGSGGGGSSSVK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 111 2.80 0.00 0 0 50 2 794.84564 1588.68401 0.34 16.60 926 926 MS2 16/38 Linfeng_20130201_rIgG_2.raw High NVQDAIADAEQR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 333 2.80 0.00 0 0 50 2 665.32324 1329.63921 -0.15 34.73 3069 3069 MS2 19/22 Linfeng_20130201_rIgG_2.raw High LLRDYQELmNVK Unambiguous 5 1 P35908 M9(Oxidation) CID 1.0000 0.0000 1 1 465 2.80 0.00 1 21 50 2 769.40607 1537.80486 0.33 36.03 3300 3300 MS2 15/22 Linfeng_20130201_rIgG_7.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 450 2.80 0.00 0 0 16 2 632.35016 1263.69304 -1.06 50.43 4886 4886 MS2 17/20 Linfeng_20130201_rIgG_8.raw High NVQDAIADAEQR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 330 2.79 0.00 0 8 50 2 665.32306 1329.63884 -0.42 35.65 3182 3182 MS2 19/22 Linfeng_20130201_rIgG_1.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 353 2.79 0.00 1 35 16 2 541.80286 1082.59844 -0.85 38.84 3353 3353 MS2 15/16 Linfeng_20130201_rIgG_5.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 129 2.79 0.00 0 34 50 3 440.86511 1320.58078 -1.61 27.17 2294 2294 MS2 21/60 Linfeng_20130201_rIgG_9.raw High LLRDYQELmNVK Unambiguous 5 1 P35908 M9(Oxidation) CID 1.0000 0.0000 1 1 472 2.79 0.00 1 2 42 3 513.27332 1537.80539 0.67 36.18 2661 2661 MS2 18/44 Linfeng_20130204_CTCF_8.raw High GSSSGGGYSSGSSSYGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 39 2.78 0.00 0 0 50 2 870.85797 1740.70867 1.74 18.84 1226 1226 MS2 21/38 Linfeng_20130201_rIgG_10.raw High DYQELmNVK Unambiguous 5 1 P35908 M6(Oxidation) CID 1.0000 0.0000 1 1 245 2.78 0.00 0 0 50 2 578.26959 1155.53191 -2.76 30.03 2198 2198 MS2 13/16 Linfeng_20130204_CTCF_1.raw High KYEDEINKR Unambiguous 3 1 P35908 CID 1.0000 0.0000 1 1 548 2.78 0.00 2 0 50 2 597.80988 1194.61247 0.92 17.41 1041 1041 MS2 11/16 Linfeng_20130201_rIgG_7.raw High SKEEAEALYHSK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 412 2.77 0.00 1 14 50 2 696.34338 1391.67949 -0.50 20.65 1474 1474 MS2 16/22 Linfeng_20130201_rIgG_10.raw High SKEEAEALYHSK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 438 2.77 0.00 1 0 50 2 696.34271 1391.67815 -1.46 20.63 1443 1443 MS2 16/22 Linfeng_20130201_rIgG_4.raw High LLRDYQELmNVK Unambiguous 5 1 P35908 M9(Oxidation) CID 1.0000 0.0000 1 1 469 2.77 0.00 1 32 50 2 769.40607 1537.80486 0.33 36.38 2681 2681 MS2 10/22 Linfeng_20130204_CTCF_8.raw High DYQELMNVK Unambiguous 5 1 P35908 CID 1.0000 0.0000 1 1 308 2.77 0.00 0 40 39 2 570.27502 1139.54277 2.27 39.47 3154 3154 MS2 14/16 Linfeng_20130204_CTCF_1.raw High LLRDYQELmNVK Unambiguous 5 1 P35908 M9(Oxidation) CID 1.0000 0.0000 1 1 479 2.77 0.00 1 9 50 3 513.27307 1537.80466 0.20 36.44 2668 2668 MS2 16/44 Linfeng_20130204_CTCF_10.raw High KYEDEINKR Unambiguous 3 1 P35908 CID 1.0000 0.0000 1 1 483 2.77 0.00 2 0 50 2 597.80878 1194.61028 -0.92 17.50 1053 1053 MS2 14/16 Linfeng_20130201_rIgG_6.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 135 2.76 0.00 0 53 50 2 660.79578 1320.58428 1.03 28.00 2386 2386 MS2 18/30 Linfeng_20130201_rIgG_3.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 370 2.76 0.00 1 11 17 2 541.80353 1082.59978 0.39 39.08 2759 2759 MS2 15/16 Linfeng_20130204_CTCF_6.raw High GSSSGGGYSSGSSSYGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 33 2.76 0.00 0 0 50 2 870.85742 1740.70757 1.11 18.42 1172 1172 MS2 19/38 Linfeng_20130201_rIgG_3.raw High IEISELNR Unambiguous 2 2 P35908;P04264 CID 1.0000 0.0000 1 1 527 2.75 0.00 0 13 50 2 487.26889 973.53050 -0.85 34.08 3025 3025 MS2 13/14 Linfeng_20130201_rIgG_1.raw High TSQNSELNNMQDLVEDYKK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 269 2.75 0.00 1 13 9 3 752.68372 2256.03659 -3.70 46.70 4336 4336 MS2 26/72 Linfeng_20130201_rIgG_5.raw High GGSGGGGSISGGGYGSGGGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 113 2.75 0.00 0 0 50 2 871.38110 1741.75493 3.66 19.92 930 930 MS2 17/44 Linfeng_20130204_CTCF_1.raw High SKEEAEALYHSKYEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 493 2.74 0.00 2 0 50 3 856.09833 2566.28043 0.77 39.93 3081 3081 MS2 18/84 Linfeng_20130204_CTCF_9.raw High QSGSRGGSGGGGSISGGGYGSGGGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 172 2.74 0.00 1 0 50 3 753.00439 2256.99863 2.15 17.62 1061 1061 MS2 22/108 Linfeng_20130201_rIgG_2.raw High YEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 561 2.74 0.00 0 24 50 2 597.31189 1193.61650 0.32 37.06 2861 2861 MS2 17/18 Linfeng_20130204_CTCF_2.raw High YEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 529 2.73 0.00 0 14 50 2 597.31207 1193.61687 0.63 36.34 3236 3236 MS2 17/18 Linfeng_20130201_rIgG_3.raw High YEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 530 2.73 0.00 0 6 50 2 597.31207 1193.61687 0.63 36.01 3202 3202 MS2 17/18 Linfeng_20130201_rIgG_3.raw High GGSGGGGSISGGGYGSGGGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 86 2.73 0.00 0 0 50 2 871.37769 1741.74809 -0.26 20.27 866 866 MS2 18/44 Linfeng_20130204_CTCF_10.raw High GGSGGGGSISGGGYGSGGGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 105 2.73 0.00 0 26 50 2 871.37878 1741.75029 1.00 28.61 1708 1708 MS2 15/44 Linfeng_20130204_CTCF_6.raw High GGSGGGGSISGGGYGSGGGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 100 2.72 0.00 0 0 50 2 871.37860 1741.74993 0.79 19.93 1397 1397 MS2 17/44 Linfeng_20130201_rIgG_7.raw High mSGDLSSNVTVSVTSSTISSNVASK Unambiguous 1 1 P35908 M1(Oxidation) CID 1.0000 0.0000 1 1 469 2.72 0.00 0 9 50 3 825.40564 2474.20237 3.88 43.36 3218 3218 MS2 21/96 Linfeng_20130204_CTCF_6.raw High mSGDLSSNVTVSVTSSTISSNVASK Unambiguous 1 1 P35908 M1(Oxidation) CID 1.0000 0.0000 1 1 438 2.71 0.00 0 0 50 3 825.40149 2474.18991 -1.15 58.50 5213 5213 MS2 18/96 Linfeng_20130204_CTCF_1.raw High IEISELNR Unambiguous 2 2 P35908;P04264 CID 1.0000 0.0000 1 1 539 2.71 0.00 0 26 50 2 487.26892 973.53057 -0.79 34.49 3051 3051 MS2 13/14 Linfeng_20130201_rIgG_3.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 339 2.71 0.00 1 0 17 2 541.80212 1082.59697 -2.21 38.74 3340 3340 MS2 15/16 Linfeng_20130201_rIgG_5.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 370 2.71 0.00 1 33 50 2 541.80371 1082.60015 0.72 39.05 3606 3606 MS2 14/16 Linfeng_20130201_rIgG_7.raw High YEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 540 2.71 0.00 0 22 50 2 597.31146 1193.61565 -0.40 37.23 3336 3336 MS2 17/18 Linfeng_20130201_rIgG_9.raw High DYQELMNVK Unambiguous 5 1 P35908 CID 1.0000 0.0000 1 1 318 2.71 0.00 0 32 50 2 570.27448 1139.54167 1.31 40.06 2873 2873 MS2 14/16 Linfeng_20130204_CTCF_3.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 408 2.70 0.00 0 30 38 2 632.35114 1263.69499 0.48 51.32 4875 4875 MS2 17/20 Linfeng_20130201_rIgG_4.raw High YGSGGGSKGGSISGGGYGSGGGK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 184 2.70 0.00 1 0 50 3 630.95679 1890.85581 -1.03 19.09 1253 1253 MS2 30/88 Linfeng_20130201_rIgG_2.raw High TSQNSELNNMQDLVEDYKK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 354 2.70 0.00 1 7 22 3 752.68799 2256.04941 1.98 47.00 3605 3605 MS2 19/72 Linfeng_20130204_CTCF_6.raw High IEISELNR Unambiguous 2 2 P35908;P04264 CID 1.0000 0.0000 1 1 561 2.70 0.00 0 9 50 2 487.26840 973.52953 -1.85 34.32 2634 2634 MS2 12/14 Linfeng_20130204_CTCF_1.raw High DYQELMNVK Unambiguous 5 1 P35908 CID 1.0000 0.0000 1 1 346 2.70 0.00 0 31 21 2 570.27399 1139.54070 0.45 39.14 3541 3541 MS2 14/16 Linfeng_20130201_rIgG_1.raw High SKEEAEALYHSK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 474 2.69 0.00 1 19 50 3 464.56464 1391.67936 -0.59 20.51 1451 1451 MS2 22/44 Linfeng_20130201_rIgG_8.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 436 2.69 0.00 0 17 19 2 919.95886 1838.91045 -2.21 49.29 3828 3828 MS2 18/42 Linfeng_20130204_CTCF_3.raw High LLRDYQELmNVK Unambiguous 5 1 P35908 M9(Oxidation) CID 1.0000 0.0000 1 1 461 2.69 0.00 1 6 50 3 513.27264 1537.80338 -0.64 36.44 2724 2724 MS2 20/44 Linfeng_20130204_CTCF_9.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 358 2.68 0.00 1 50 50 2 541.80542 1082.60356 3.88 39.43 3002 3002 MS2 15/16 Linfeng_20130204_CTCF_7.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 463 2.68 0.00 0 0 50 2 554.27625 1107.54521 2.04 26.06 2157 2157 MS2 14/16 Linfeng_20130201_rIgG_10.raw High DYQELMNVK Unambiguous 5 1 P35908 CID 1.0000 0.0000 1 1 332 2.68 0.00 0 32 34 2 570.27399 1139.54070 0.45 39.81 3143 3143 MS2 14/16 Linfeng_20130204_CTCF_2.raw High DYQELMNVK Unambiguous 5 1 P35908 CID 1.0000 0.0000 1 1 335 2.68 0.00 0 28 23 2 570.27374 1139.54021 0.02 39.82 3586 3586 MS2 14/16 Linfeng_20130201_rIgG_8.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 507 2.68 0.00 0 16 50 2 554.27521 1107.54314 0.17 25.15 1911 1911 MS2 14/16 Linfeng_20130201_rIgG_5.raw High GGGGGGFRGFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 394 2.68 0.00 1 34 46 3 633.97400 1899.90744 0.90 34.52 2861 2861 MS2 23/84 Linfeng_20130201_rIgG_5.raw High QSGSRGGSGGGGSISGGGYGSGGGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 149 2.68 0.00 1 0 50 3 753.00244 2256.99277 -0.45 17.95 1075 1075 MS2 23/108 Linfeng_20130201_rIgG_5.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 367 2.67 0.00 1 35 50 2 541.80475 1082.60222 2.64 39.63 3049 3049 MS2 15/16 Linfeng_20130204_CTCF_9.raw High YEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 534 2.67 0.00 0 11 50 2 597.31165 1193.61601 -0.09 35.76 3171 3171 MS2 16/18 Linfeng_20130201_rIgG_2.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 127 2.66 0.00 0 20 50 3 440.86517 1320.58097 -1.47 29.63 2582 2582 MS2 24/60 Linfeng_20130201_rIgG_9.raw High YEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 520 2.66 0.00 0 34 50 2 597.31250 1193.61772 1.34 37.03 3400 3400 MS2 17/18 Linfeng_20130201_rIgG_7.raw High GGSGGGGSISGGGYGSGGGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 96 2.66 0.00 0 6 50 2 871.37921 1741.75115 1.49 20.22 908 908 MS2 13/44 Linfeng_20130204_CTCF_9.raw High YEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 564 2.66 0.00 0 21 50 2 597.31177 1193.61626 0.11 36.87 3282 3282 MS2 17/18 Linfeng_20130201_rIgG_2.raw High YLDGLTAER Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 402 2.66 0.00 0 29 50 2 519.26581 1037.52434 -1.83 36.37 2716 2716 MS2 14/16 Linfeng_20130204_CTCF_9.raw High LLRDYQELmNVK Unambiguous 5 1 P35908 M9(Oxidation) CID 1.0000 0.0000 1 1 474 2.65 0.00 1 19 50 3 513.27216 1537.80191 -1.59 35.72 2773 2773 MS2 17/44 Linfeng_20130204_CTCF_1.raw High NVQDAIADAEQR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 332 2.65 0.00 0 35 50 2 665.32318 1329.63909 -0.24 35.47 3131 3131 MS2 19/22 Linfeng_20130201_rIgG_4.raw High GGGGGGFRGFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 382 2.65 0.00 1 20 50 3 633.97260 1899.90323 -1.32 34.28 2587 2587 MS2 23/84 Linfeng_20130204_CTCF_2.raw High YEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 553 2.64 0.00 0 32 50 2 597.31140 1193.61553 -0.50 36.34 3229 3229 MS2 16/18 Linfeng_20130201_rIgG_2.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 393 2.64 0.00 0 21 50 2 632.35425 1263.70122 5.41 51.62 4404 4404 MS2 15/20 Linfeng_20130204_CTCF_2.raw High YLDGLTAER Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 370 2.64 0.00 0 25 50 2 519.26703 1037.52678 0.52 35.70 3164 3164 MS2 14/16 Linfeng_20130201_rIgG_2.raw High KYEDEINKR Unambiguous 3 1 P35908 CID 1.0000 0.0000 1 1 587 2.64 0.00 2 0 50 2 597.80957 1194.61186 0.41 17.29 999 999 MS2 14/16 Linfeng_20130201_rIgG_4.raw High YLDGLTAER Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 404 2.64 0.00 0 31 50 2 519.26569 1037.52410 -2.07 36.15 3229 3229 MS2 14/16 Linfeng_20130201_rIgG_9.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 134 2.64 0.00 0 65 50 2 660.79565 1320.58403 0.85 29.02 2483 2483 MS2 16/30 Linfeng_20130201_rIgG_4.raw High SKEEAEALYHSK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 478 2.64 0.00 1 39 50 3 464.56454 1391.67908 -0.79 20.77 1499 1499 MS2 23/44 Linfeng_20130201_rIgG_6.raw High YEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 550 2.63 0.00 0 19 50 2 597.31226 1193.61724 0.93 36.83 3270 3270 MS2 17/18 Linfeng_20130201_rIgG_4.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 128 2.63 0.00 0 3 50 3 440.86530 1320.58133 -1.20 28.45 2475 2475 MS2 24/60 Linfeng_20130201_rIgG_6.raw High SKEEAEALYHSK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 447 2.63 0.00 1 48 50 3 464.56351 1391.67597 -3.03 20.52 1456 1456 MS2 17/44 Linfeng_20130201_rIgG_10.raw High GGGGGGFRGFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 391 2.63 0.00 1 21 50 3 633.97284 1899.90396 -0.93 34.39 3087 3087 MS2 26/84 Linfeng_20130201_rIgG_6.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 419 2.63 0.00 0 0 31 2 632.34979 1263.69231 -1.64 51.13 4245 4245 MS2 17/20 Linfeng_20130204_CTCF_10.raw High NVQDAIADAEQR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 333 2.62 0.00 0 42 50 2 665.32434 1329.64141 1.51 35.53 2415 2415 MS2 16/22 Linfeng_20130204_CTCF_3.raw High IEISELNR Unambiguous 2 2 P35908;P04264 CID 1.0000 0.0000 1 1 525 2.62 0.00 0 24 50 2 487.26898 973.53069 -0.66 35.87 3172 3172 MS2 13/14 Linfeng_20130201_rIgG_4.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 353 2.62 0.00 1 15 15 2 541.80292 1082.59856 -0.74 38.71 3336 3336 MS2 15/16 Linfeng_20130201_rIgG_5.raw High SKEEAEALYHSK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 421 2.62 0.00 1 48 50 3 464.56381 1391.67688 -2.37 20.51 1460 1460 MS2 19/44 Linfeng_20130201_rIgG_9.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 151 2.62 0.00 0 52 50 3 440.86676 1320.58573 2.13 29.58 2657 2657 MS2 25/60 Linfeng_20130201_rIgG_7.raw High DYQELMNVK Unambiguous 5 1 P35908 CID 1.0000 0.0000 1 1 338 2.61 0.00 0 32 50 2 570.27399 1139.54070 0.45 40.13 2877 2877 MS2 14/16 Linfeng_20130204_CTCF_4.raw High DYQELMNVK Unambiguous 5 1 P35908 CID 1.0000 0.0000 1 1 342 2.61 0.00 0 27 50 2 570.27405 1139.54082 0.56 39.84 2843 2843 MS2 13/16 Linfeng_20130204_CTCF_6.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 367 2.61 0.00 1 28 50 2 541.80426 1082.60124 1.74 39.63 2995 2995 MS2 15/16 Linfeng_20130204_CTCF_10.raw High YLDGLTAER Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 369 2.61 0.00 0 25 50 2 519.26666 1037.52605 -0.19 36.58 3305 3305 MS2 14/16 Linfeng_20130201_rIgG_6.raw High GFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 342 2.61 0.00 0 36 50 2 627.80859 1254.60991 2.02 27.33 1576 1576 MS2 16/26 Linfeng_20130204_CTCF_3.raw High SKEEAEALYHSK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 505 2.60 0.00 1 0 50 2 696.34479 1391.68230 1.52 20.73 1509 1509 MS2 17/22 Linfeng_20130201_rIgG_7.raw High DYQELMNVK Unambiguous 5 1 P35908 CID 1.0000 0.0000 1 1 337 2.60 0.00 0 33 50 2 570.27405 1139.54082 0.56 39.48 3652 3652 MS2 14/16 Linfeng_20130201_rIgG_7.raw High YEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 543 2.60 0.00 0 19 50 2 597.31189 1193.61650 0.32 36.11 3225 3225 MS2 17/18 Linfeng_20130201_rIgG_9.raw High IEISELNR Unambiguous 2 2 P35908;P04264 CID 1.0000 0.0000 1 1 544 2.59 0.00 0 14 50 2 487.26910 973.53093 -0.41 35.55 2755 2755 MS2 13/14 Linfeng_20130204_CTCF_1.raw High YLDGLTAER Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 411 2.59 0.00 0 22 50 2 519.26599 1037.52471 -1.48 36.16 3313 3313 MS2 14/16 Linfeng_20130201_rIgG_7.raw High YLDGLTAER Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 419 2.59 0.00 0 28 50 2 519.26624 1037.52519 -1.01 35.01 3086 3086 MS2 13/16 Linfeng_20130201_rIgG_4.raw High IEISELNR Unambiguous 2 2 P35908;P04264 CID 1.0000 0.0000 1 1 454 2.59 0.00 0 10 50 2 487.26923 973.53118 -0.16 34.44 3029 3029 MS2 13/14 Linfeng_20130201_rIgG_4.raw High GGSGGGGSISGGGYGSGGGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 92 2.58 0.00 0 59 50 2 871.37750 1741.74773 -0.47 19.53 1322 1322 MS2 15/44 Linfeng_20130201_rIgG_8.raw Medium SKEEAEALYHSKYEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 483 2.58 0.00 2 11 39 4 642.32690 2566.28579 2.85 39.82 3043 3043 MS2 23/126 Linfeng_20130204_CTCF_7.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 356 2.58 0.00 1 19 47 2 541.80518 1082.60307 3.43 40.09 2869 2869 MS2 15/16 Linfeng_20130204_CTCF_6.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 126 2.58 0.00 0 20 50 3 440.86459 1320.57923 -2.79 28.53 2421 2421 MS2 20/60 Linfeng_20130201_rIgG_8.raw High GGSGGGGSISGGGYGSGGGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 93 2.57 0.00 0 8 50 2 871.37738 1741.74748 -0.61 20.94 1058 1058 MS2 14/44 Linfeng_20130204_CTCF_2.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 129 2.57 0.00 0 0 50 3 440.86465 1320.57941 -2.65 29.29 1773 1773 MS2 24/60 Linfeng_20130204_CTCF_6.raw High DYQELMNVK Unambiguous 5 1 P35908 CID 1.0000 0.0000 1 1 341 2.56 0.00 0 34 41 2 570.27399 1139.54070 0.45 39.46 3555 3555 MS2 14/16 Linfeng_20130201_rIgG_3.raw Medium SKEEAEALYHSKYEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 490 2.56 0.00 2 12 15 4 642.32501 2566.27822 -0.09 41.30 3001 3001 MS2 29/126 Linfeng_20130204_CTCF_6.raw High GSSSGGGYSSGSSSYGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 29 2.56 0.00 0 0 50 2 870.85577 1740.70427 -0.78 18.87 1232 1232 MS2 21/38 Linfeng_20130201_rIgG_8.raw High GSSSGGGYSSGSSSYGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 40 2.55 0.00 0 0 50 2 870.85876 1740.71025 2.65 18.62 1193 1193 MS2 20/38 Linfeng_20130201_rIgG_2.raw High DYQELMNVK Unambiguous 5 1 P35908 CID 1.0000 0.0000 1 1 340 2.55 0.00 0 26 50 2 570.27374 1139.54021 0.02 39.14 3514 3514 MS2 14/16 Linfeng_20130201_rIgG_2.raw High GGSGGGGSISGGGYGSGGGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 99 2.55 0.00 0 0 50 2 871.37927 1741.75127 1.56 27.28 1580 1580 MS2 16/44 Linfeng_20130204_CTCF_6.raw High IEISELNR Unambiguous 2 2 P35908;P04264 CID 1.0000 0.0000 1 1 529 2.55 0.00 0 17 50 2 487.26862 973.52995 -1.41 35.40 3157 3157 MS2 13/14 Linfeng_20130201_rIgG_1.raw High LLRDYQELMNVK Unambiguous 5 1 P35908 CID 1.0000 0.0000 1 1 488 2.54 0.00 1 8 48 3 507.94254 1521.81305 2.37 44.89 3574 3574 MS2 17/44 Linfeng_20130204_CTCF_7.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 325 2.54 0.00 1 26 41 2 541.80322 1082.59917 -0.18 38.91 3499 3499 MS2 15/16 Linfeng_20130201_rIgG_10.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 143 2.52 0.00 0 14 50 3 440.86597 1320.58335 0.33 28.44 1992 1992 MS2 22/60 Linfeng_20130204_CTCF_2.raw High GGSGGGGSISGGGYGSGGGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 109 2.52 0.00 0 0 50 2 871.37994 1741.75261 2.33 26.79 1533 1533 MS2 14/44 Linfeng_20130204_CTCF_6.raw High GGSGGGGSISGGGYGSGGGSGGRYGSGGGSK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 133 2.52 0.00 1 0 50 3 812.35718 2435.05698 0.08 21.26 1561 1561 MS2 25/120 Linfeng_20130201_rIgG_3.raw High DYQELMNVK Unambiguous 5 1 P35908 CID 1.0000 0.0000 1 1 312 2.52 0.00 0 27 28 2 570.27460 1139.54192 1.52 39.47 3543 3543 MS2 14/16 Linfeng_20130201_rIgG_4.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 460 2.52 0.00 0 20 50 2 554.27435 1107.54143 -1.37 25.94 2145 2145 MS2 14/16 Linfeng_20130201_rIgG_3.raw High YEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 565 2.51 0.00 0 12 50 2 597.31183 1193.61638 0.22 36.47 3250 3250 MS2 16/18 Linfeng_20130201_rIgG_10.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 128 2.51 0.00 0 23 50 3 440.86496 1320.58033 -1.96 27.29 2299 2299 MS2 22/60 Linfeng_20130201_rIgG_10.raw Medium SKEEAEALYHSKYEELQVTVGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 493 2.51 0.00 2 26 50 4 642.32440 2566.27578 -1.05 42.09 3378 3378 MS2 30/126 Linfeng_20130204_CTCF_2.raw High IEISELNR Unambiguous 2 2 P35908;P04264 CID 1.0000 0.0000 1 1 538 2.51 0.00 0 26 50 2 487.26865 973.53002 -1.35 34.22 3019 3019 MS2 13/14 Linfeng_20130201_rIgG_2.raw Medium TSQNSELNNmQDLVEDYKKK Unambiguous 1 1 P35908 M10(Oxidation) CID 1.0000 0.0000 1 1 342 2.50 0.00 2 16 50 4 600.78851 2400.13222 -1.09 30.65 2677 2677 MS2 24/114 Linfeng_20130201_rIgG_10.raw High GSSSGGGYSSGSSSYGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 43 2.50 0.00 0 0 50 2 870.85760 1740.70793 1.32 18.58 745 745 MS2 18/38 Linfeng_20130204_CTCF_2.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 139 2.50 0.00 0 6 50 2 660.79572 1320.58415 0.94 28.51 2463 2463 MS2 13/30 Linfeng_20130201_rIgG_9.raw High NVQDAIADAEQR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 363 2.50 0.00 0 30 50 2 665.32251 1329.63774 -1.25 35.08 3125 3125 MS2 19/22 Linfeng_20130201_rIgG_1.raw High NVQDAIADAEQR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 314 2.50 0.00 0 7 50 2 665.32355 1329.63982 0.31 34.67 3083 3083 MS2 19/22 Linfeng_20130201_rIgG_1.raw High DYQELmNVK Unambiguous 5 1 P35908 M6(Oxidation) CID 1.0000 0.0000 1 1 217 2.50 0.00 0 23 50 2 578.27087 1155.53447 -0.54 31.84 2803 2803 MS2 14/16 Linfeng_20130201_rIgG_1.raw Medium VLYDAEISQIHQSVTDTNVILSmDNSR Unambiguous 1 1 P35908 M23(Oxidation) CID 1.0000 0.0000 1 1 440 2.50 0.00 0 3 12 3 1022.16827 3064.49027 0.32 52.38 5064 5064 MS2 18/104 Linfeng_20130201_rIgG_1.raw Medium HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 126 2.49 0.00 0 52 50 3 440.86560 1320.58225 -0.50 28.28 2395 2395 MS2 24/60 Linfeng_20130201_rIgG_8.raw High IEISELNR Unambiguous 2 2 P35908;P04264 CID 1.0000 0.0000 1 1 521 2.49 0.00 0 21 50 2 487.26877 973.53026 -1.10 35.83 3184 3184 MS2 13/14 Linfeng_20130201_rIgG_3.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 325 2.49 0.00 1 33 50 2 541.80322 1082.59917 -0.18 39.27 2988 2988 MS2 15/16 Linfeng_20130204_CTCF_8.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 458 2.48 0.00 0 0 50 2 554.27472 1107.54216 -0.71 25.66 1686 1686 MS2 14/16 Linfeng_20130204_CTCF_1.raw High GGSSSGGGYGSGGGGSSSVK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 104 2.48 0.00 0 0 50 2 794.84576 1588.68425 0.50 16.68 449 449 MS2 14/38 Linfeng_20130204_CTCF_6.raw Medium SKEEAEALYHSK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 465 2.47 0.00 1 40 50 3 464.56424 1391.67817 -1.45 20.58 1489 1489 MS2 20/44 Linfeng_20130201_rIgG_7.raw Medium SKEEAEALYHSK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 479 2.47 0.00 1 6 50 3 464.56451 1391.67899 -0.86 20.61 1022 1022 MS2 24/44 Linfeng_20130204_CTCF_1.raw High TSQNSELNNmQDLVEDYKK Unambiguous 1 1 P35908 M10(Oxidation) CID 1.0000 0.0000 1 1 266 2.47 0.00 1 0 50 2 1136.52344 2272.03960 -0.12 33.22 2924 2924 MS2 16/36 Linfeng_20130201_rIgG_3.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 139 2.46 0.00 0 9 50 2 660.79559 1320.58391 0.76 28.15 2403 2403 MS2 18/30 Linfeng_20130201_rIgG_3.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 107 2.45 0.00 0 54 50 2 660.79437 1320.58147 -1.09 27.49 2323 2323 MS2 16/30 Linfeng_20130201_rIgG_1.raw Medium HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 148 2.45 0.00 0 23 50 3 440.86609 1320.58371 0.61 27.16 2268 2268 MS2 22/60 Linfeng_20130201_rIgG_4.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 499 2.43 0.00 0 0 50 2 554.27533 1107.54338 0.39 25.75 2120 2120 MS2 14/16 Linfeng_20130201_rIgG_1.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 118 2.43 0.00 0 15 50 2 660.79358 1320.57988 -2.29 28.55 2447 2447 MS2 17/30 Linfeng_20130201_rIgG_3.raw Medium GGGGGGFRGFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 393 2.42 0.00 1 42 50 3 633.97296 1899.90433 -0.74 34.04 3006 3006 MS2 21/84 Linfeng_20130201_rIgG_3.raw High KYEDEINKR Unambiguous 3 1 P35908 CID 1.0000 0.0000 1 1 601 2.42 0.00 2 0 50 2 597.80963 1194.61199 0.51 17.18 556 556 MS2 15/16 Linfeng_20130204_CTCF_1.raw Medium HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 128 2.42 0.00 0 8 50 3 440.86569 1320.58252 -0.29 28.38 2522 2522 MS2 20/60 Linfeng_20130201_rIgG_7.raw Medium NVQDAIADAEQRGEHALK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 525 2.42 0.00 1 14 26 3 655.66437 1964.97855 0.00 44.67 4093 4093 MS2 21/68 Linfeng_20130201_rIgG_4.raw High NVQDAIADAEQR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 352 2.42 0.00 0 34 50 2 665.32452 1329.64177 1.78 35.73 3168 3168 MS2 19/22 Linfeng_20130201_rIgG_2.raw High DYQELMNVK Unambiguous 5 1 P35908 CID 1.0000 0.0000 1 1 303 2.41 0.00 0 46 50 2 570.27472 1139.54216 1.74 40.12 3100 3100 MS2 14/16 Linfeng_20130204_CTCF_9.raw Medium GGSGGGGSISGGGYGSGGGSGGRYGSGGGSK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 132 2.40 0.00 1 0 50 3 812.35718 2435.05698 0.08 21.21 1534 1534 MS2 23/120 Linfeng_20130201_rIgG_2.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 130 2.40 0.00 0 0 50 2 660.79584 1320.58440 1.13 27.41 2308 2308 MS2 19/30 Linfeng_20130201_rIgG_3.raw Medium GGGGGGFRGFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 382 2.40 0.00 1 3 50 3 633.97260 1899.90323 -1.32 34.60 2324 2324 MS2 22/84 Linfeng_20130204_CTCF_3.raw High KYEDEINKR Unambiguous 3 1 P35908 CID 1.0000 0.0000 1 1 450 2.40 0.00 2 21 50 2 597.80865 1194.61003 -1.12 17.15 998 998 MS2 11/16 Linfeng_20130201_rIgG_2.raw Medium YGSGGGSKGGSISGGGYGSGGGK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 200 2.40 0.00 1 48 50 3 630.95770 1890.85855 0.42 19.38 1305 1305 MS2 21/88 Linfeng_20130201_rIgG_3.raw High EIKIEISELNR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 400 2.40 0.00 1 46 50 2 672.37994 1343.75261 -0.27 42.63 3873 3873 MS2 14/20 Linfeng_20130201_rIgG_4.raw High SKEEAEALYHSK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 445 2.39 0.00 1 0 50 2 696.34430 1391.68132 0.82 20.38 1423 1423 MS2 14/22 Linfeng_20130201_rIgG_2.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 506 2.39 0.00 0 9 50 2 554.27521 1107.54314 0.17 25.40 1569 1569 MS2 13/16 Linfeng_20130204_CTCF_7.raw Medium TSQNSELNNMQDLVEDYKK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 353 2.38 0.00 1 41 42 3 752.68817 2256.04996 2.22 47.02 3880 3880 MS2 21/72 Linfeng_20130204_CTCF_8.raw Medium TSQNSELNNmQDLVEDYKK Unambiguous 1 1 P35908 M10(Oxidation) CID 1.0000 0.0000 1 1 273 2.37 0.00 1 0 50 3 758.01672 2272.03562 -1.87 32.86 2449 2449 MS2 19/72 Linfeng_20130204_CTCF_2.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 309 2.37 0.00 1 17 50 2 541.80347 1082.59966 0.27 39.60 3561 3561 MS2 12/16 Linfeng_20130201_rIgG_2.raw Medium HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 130 2.37 0.00 0 54 50 3 440.86569 1320.58252 -0.29 27.43 2347 2347 MS2 20/60 Linfeng_20130201_rIgG_6.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 400 2.36 0.00 0 24 50 2 632.34979 1263.69231 -1.64 57.77 5133 5133 MS2 15/20 Linfeng_20130204_CTCF_1.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 437 2.36 0.00 0 0 50 2 554.27509 1107.54289 -0.05 25.62 1681 1681 MS2 13/16 Linfeng_20130204_CTCF_1.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 367 2.36 0.00 1 47 29 2 541.80359 1082.59990 0.50 39.12 3388 3388 MS2 13/16 Linfeng_20130201_rIgG_5.raw Medium HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 127 2.35 0.00 0 6 50 3 440.86456 1320.57914 -2.86 28.32 1882 1882 MS2 24/60 Linfeng_20130204_CTCF_8.raw High LLRDYQELmNVK Unambiguous 5 1 P35908 M9(Oxidation) CID 1.0000 0.0000 1 1 471 2.34 0.00 1 12 50 2 769.40613 1537.80498 0.41 36.52 2707 2707 MS2 14/22 Linfeng_20130204_CTCF_7.raw High IEISELNR Unambiguous 2 2 P35908;P04264 CID 1.0000 0.0000 1 1 507 2.34 0.00 0 28 50 2 487.26855 973.52983 -1.54 35.60 3154 3154 MS2 13/14 Linfeng_20130201_rIgG_2.raw Medium TSQNSELNNmQDLVEDYKK Unambiguous 1 1 P35908 M10(Oxidation) CID 1.0000 0.0000 1 1 330 2.34 0.00 1 2 50 3 758.01923 2272.04312 1.43 33.07 2344 2344 MS2 21/72 Linfeng_20130204_CTCF_8.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 344 2.34 0.00 1 29 50 2 541.80499 1082.60271 3.09 39.44 2810 2810 MS2 14/16 Linfeng_20130204_CTCF_3.raw High DYQELmNVK Unambiguous 5 1 P35908 M6(Oxidation) CID 1.0000 0.0000 1 1 211 2.34 0.00 0 33 50 2 578.27081 1155.53435 -0.65 32.08 2827 2827 MS2 13/16 Linfeng_20130201_rIgG_1.raw High SKEEAEALYHSK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 438 2.34 0.00 1 0 50 2 696.34332 1391.67937 -0.58 20.69 1484 1484 MS2 15/22 Linfeng_20130201_rIgG_9.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 115 2.33 0.00 0 9 50 2 660.79413 1320.58098 -1.46 28.22 1886 1886 MS2 16/30 Linfeng_20130204_CTCF_7.raw Medium AAFGGSGGRGSSSGGGYSSGSSSYGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 77 2.33 0.00 1 0 50 3 834.35901 2501.06247 -1.94 23.82 1451 1451 MS2 24/112 Linfeng_20130204_CTCF_1.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 367 2.33 0.00 1 53 50 2 541.80389 1082.60051 1.06 39.10 3561 3561 MS2 14/16 Linfeng_20130201_rIgG_6.raw High YLDGLTAER Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 362 2.33 0.00 0 31 50 2 519.26672 1037.52617 -0.07 36.10 3256 3256 MS2 14/16 Linfeng_20130201_rIgG_6.raw Medium LLRDYQELMNVK Unambiguous 5 1 P35908 CID 1.0000 0.0000 1 1 457 2.33 0.00 1 22 50 3 507.94193 1521.81122 1.17 44.82 3358 3358 MS2 17/44 Linfeng_20130204_CTCF_4.raw Medium GGGGGGFRGFSSGSAVVSGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 415 2.32 0.00 1 23 50 3 633.97437 1899.90854 1.48 34.24 3029 3029 MS2 23/84 Linfeng_20130201_rIgG_10.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 491 2.32 0.00 0 33 50 2 554.27655 1107.54582 2.59 25.94 2205 2205 MS2 14/16 Linfeng_20130201_rIgG_7.raw High DYQELmNVK Unambiguous 5 1 P35908 M6(Oxidation) CID 1.0000 0.0000 1 1 261 2.31 0.00 0 20 50 2 578.27161 1155.53594 0.73 31.93 2394 2394 MS2 13/16 Linfeng_20130204_CTCF_1.raw High KYEDEINKR Unambiguous 3 1 P35908 CID 1.0000 0.0000 1 1 592 2.30 0.00 2 0 50 2 597.80896 1194.61064 -0.61 17.33 1018 1018 MS2 14/16 Linfeng_20130201_rIgG_9.raw Medium HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 129 2.30 0.00 0 5 50 3 440.86578 1320.58280 -0.09 27.71 1825 1825 MS2 19/60 Linfeng_20130204_CTCF_9.raw High SKEEAEALYHSK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 476 2.30 0.00 1 0 50 2 696.34430 1391.68132 0.82 20.97 944 944 MS2 16/22 Linfeng_20130204_CTCF_6.raw High GGSSSGGGYGSGGGGSSSVK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 92 2.30 0.00 0 12 50 2 794.84521 1588.68315 -0.19 16.18 395 395 MS2 18/38 Linfeng_20130204_CTCF_6.raw Medium LLRDYQELmNVK Unambiguous 5 1 P35908 M9(Oxidation) CID 1.0000 0.0000 1 1 463 2.29 0.00 1 3 50 3 513.27234 1537.80246 -1.23 35.83 2739 2739 MS2 16/44 Linfeng_20130204_CTCF_2.raw High GGSGGGGSISGGGYGSGGGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 98 2.29 0.00 0 0 50 2 871.37836 1741.74944 0.51 20.10 907 907 MS2 14/44 Linfeng_20130204_CTCF_8.raw Medium GSSSGGGYSSGSSSYGSGGRQSGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 61 2.29 0.00 1 0 50 3 752.65503 2255.95053 -0.14 16.97 973 973 MS2 24/96 Linfeng_20130201_rIgG_3.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 122 2.28 0.00 0 34 50 2 660.79449 1320.58171 -0.91 28.01 2199 2199 MS2 17/30 Linfeng_20130201_rIgG_5.raw High NVQDAIADAEQR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 351 2.28 0.00 0 7 50 2 665.32281 1329.63835 -0.79 35.07 3121 3121 MS2 18/22 Linfeng_20130201_rIgG_9.raw High KYEDEINKR Unambiguous 3 1 P35908 CID 1.0000 0.0000 1 1 530 2.28 0.00 2 0 50 2 597.80756 1194.60784 -2.96 17.42 1029 1029 MS2 11/16 Linfeng_20130201_rIgG_10.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 461 2.27 0.00 0 29 50 2 554.27411 1107.54094 -1.81 26.16 2014 2014 MS2 14/16 Linfeng_20130201_rIgG_5.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 493 2.27 0.00 0 11 50 2 554.27539 1107.54350 0.50 25.99 1456 1456 MS2 12/16 Linfeng_20130204_CTCF_6.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 118 2.27 0.00 0 18 50 2 660.79468 1320.58208 -0.63 27.36 1884 1884 MS2 17/30 Linfeng_20130204_CTCF_1.raw High NVQDAIADAEQR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 316 2.27 0.00 0 7 50 2 665.32214 1329.63701 -1.80 35.69 2426 2426 MS2 16/22 Linfeng_20130204_CTCF_4.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 354 2.27 0.00 1 19 50 2 541.80298 1082.59868 -0.63 39.96 3606 3606 MS2 12/16 Linfeng_20130201_rIgG_3.raw High DYQELmNVK Unambiguous 5 1 P35908 M6(Oxidation) CID 1.0000 0.0000 1 1 241 2.26 0.00 0 18 50 2 578.26941 1155.53154 -3.08 31.27 2327 2327 MS2 11/16 Linfeng_20130204_CTCF_1.raw High GGSISGGGYGSGGGK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 265 2.26 0.00 0 16 50 2 599.27838 1197.54949 -0.03 19.14 749 749 MS2 19/28 Linfeng_20130204_CTCF_6.raw Medium AAFGGSGGRGSSSGGGYSSGSSSYGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 90 2.25 0.00 1 43 50 3 834.36029 2501.06632 -0.40 23.96 1915 1915 MS2 30/112 Linfeng_20130201_rIgG_9.raw Medium TSQNSELNNmQDLVEDYKK Unambiguous 1 1 P35908 M10(Oxidation) CID 1.0000 0.0000 1 1 291 2.25 0.00 1 0 50 3 758.01776 2272.03873 -0.50 32.59 2461 2461 MS2 20/72 Linfeng_20130204_CTCF_1.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 455 2.24 0.00 0 14 50 2 554.27466 1107.54204 -0.82 26.05 2187 2187 MS2 14/16 Linfeng_20130201_rIgG_6.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 447 2.23 0.00 0 20 50 2 554.27441 1107.54155 -1.26 25.86 2113 2113 MS2 13/16 Linfeng_20130201_rIgG_4.raw High GSSSGGGYSSGSSSYGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 37 2.23 0.00 0 0 50 2 870.85693 1740.70659 0.55 19.16 790 790 MS2 15/38 Linfeng_20130204_CTCF_8.raw High GGSSSGGGYGSGGGGSSSVK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 94 2.22 0.00 0 0 50 2 794.84467 1588.68205 -0.89 16.67 916 916 MS2 13/38 Linfeng_20130201_rIgG_5.raw High GSSSGGGYSSGSSSYGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 33 2.22 0.00 0 0 50 2 870.85675 1740.70622 0.34 19.11 788 788 MS2 16/38 Linfeng_20130204_CTCF_7.raw High GGSGGGGSISGGGYGSGGGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 110 2.21 0.00 0 6 50 2 871.38171 1741.75615 4.36 20.32 810 810 MS2 14/44 Linfeng_20130204_CTCF_4.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 367 2.21 0.00 1 55 50 2 541.80396 1082.60063 1.18 38.89 3093 3093 MS2 13/16 Linfeng_20130204_CTCF_1.raw High GGSISGGGYGSGGGK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 264 2.21 0.00 0 0 50 2 599.27795 1197.54863 -0.74 19.00 802 802 MS2 15/28 Linfeng_20130204_CTCF_2.raw High GGSGGGGSISGGGYGSGGGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 106 2.20 0.00 0 0 50 2 871.38171 1741.75615 4.36 20.34 825 825 MS2 13/44 Linfeng_20130204_CTCF_3.raw High GGSISGGGYGSGGGKHSSGGGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 195 2.19 0.00 1 0 50 2 961.93811 1922.86894 -0.58 16.00 400 400 MS2 16/44 Linfeng_20130204_CTCF_2.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 474 2.18 0.00 0 14 50 2 554.27539 1107.54350 0.50 25.38 1372 1372 MS2 11/16 Linfeng_20130204_CTCF_3.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 453 2.18 0.00 0 22 50 2 554.27472 1107.54216 -0.71 25.97 2159 2159 MS2 14/16 Linfeng_20130201_rIgG_9.raw High KYEDEINKR Unambiguous 3 1 P35908 CID 1.0000 0.0000 1 1 447 2.18 0.00 2 22 50 2 597.80859 1194.60991 -1.22 17.35 1018 1018 MS2 12/16 Linfeng_20130201_rIgG_8.raw High IEISELNR Unambiguous 2 2 P35908;P04264 CID 1.0000 0.0000 1 1 451 2.17 0.00 0 28 50 2 487.27002 973.53276 1.47 36.04 3250 3250 MS2 13/14 Linfeng_20130201_rIgG_6.raw High AQEREQIK Unambiguous 11 2 P35908;H9KV51 CID 1.0000 0.0000 1 1 452 2.17 0.00 1 6 50 2 501.27246 1001.53765 0.16 15.72 825 825 MS2 12/14 Linfeng_20130201_rIgG_3.raw High HGGGGGGFGGGGFGSR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 133 2.17 0.00 0 0 50 2 660.79541 1320.58354 0.48 28.05 2369 2369 MS2 19/30 Linfeng_20130201_rIgG_8.raw High NVQDAIADAEQR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 391 2.16 0.00 0 21 50 2 665.32428 1329.64128 1.42 35.42 2382 2382 MS2 16/22 Linfeng_20130204_CTCF_6.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 469 2.15 0.00 0 0 50 2 554.27454 1107.54180 -1.04 26.11 2174 2174 MS2 13/16 Linfeng_20130201_rIgG_9.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 433 2.15 0.00 0 32 50 2 554.27448 1107.54167 -1.15 24.76 2004 2004 MS2 14/16 Linfeng_20130201_rIgG_1.raw High GGSISGGGYGSGGGK Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 248 2.13 0.00 0 7 50 2 599.27789 1197.54851 -0.84 18.54 680 680 MS2 15/28 Linfeng_20130204_CTCF_6.raw High DYQELmNVK Unambiguous 5 1 P35908 M6(Oxidation) CID 1.0000 0.0000 1 1 241 2.11 0.00 0 21 50 2 578.26923 1155.53118 -3.39 32.41 2444 2444 MS2 12/16 Linfeng_20130204_CTCF_1.raw High TSQNSELNNmQDLVEDYKK Unambiguous 1 1 P35908 M10(Oxidation) CID 1.0000 0.0000 1 1 245 2.11 0.00 1 0 50 2 1136.52344 2272.03960 -0.12 32.71 2870 2870 MS2 15/36 Linfeng_20130201_rIgG_2.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 492 2.08 0.00 0 23 50 2 554.27539 1107.54350 0.50 24.94 1596 1596 MS2 12/16 Linfeng_20130204_CTCF_1.raw High DVDNAYmIK Unambiguous 1 1 P35908 M7(Oxidation) CID 1.0000 0.0000 1 1 186 2.07 0.00 0 40 50 2 542.75208 1084.49687 -1.03 29.11 2520 2520 MS2 11/16 Linfeng_20130201_rIgG_1.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 475 2.03 0.00 0 0 50 2 554.27478 1107.54228 -0.60 25.52 1671 1671 MS2 13/16 Linfeng_20130204_CTCF_1.raw High GGSGGGGSISGGGYGSGGGSGGR Unambiguous 1 1 P35908 CID 1.0000 0.0000 1 1 104 2.02 0.00 0 27 50 2 871.38074 1741.75420 3.24 25.98 1455 1455 MS2 16/44 Linfeng_20130204_CTCF_6.raw High IEISELNR Unambiguous 2 2 P35908;P04264 CID 1.0000 0.0000 1 1 551 2.02 0.00 0 26 50 2 487.26892 973.53057 -0.79 34.65 2623 2623 MS2 11/14 Linfeng_20130204_CTCF_2.raw P35527 "Keratin, type I cytoskeletal 9 OS=Homo sapiens GN=KRT9 PE=1 SV=3 - [K1C9_HUMAN]" 74.00 1 35 36 1006 2122.68 72.87 33 560 1574.56 67.74 28 446 623 62.0 5.24 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High HGVQELEIELQSQLSKK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 372 6.59 0.00 1 1 7 3 656.02478 1966.05979 -0.34 49.03 4590 4590 MS2 33/64 Linfeng_20130201_rIgG_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 6.56 0.00 0 0 50 3 1075.09912 3223.28281 0.33 25.77 2157 2157 MS2 46/156 Linfeng_20130201_rIgG_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 6.42 0.00 0 0 50 3 1075.09875 3223.28171 -0.01 26.39 2195 2195 MS2 41/156 Linfeng_20130201_rIgG_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 21 6.41 0.00 0 0 41 3 1075.10022 3223.28611 1.35 37.10 2552 2552 MS2 41/156 Linfeng_20130204_CTCF_6.raw High HGVQELEIELQSQLSKK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 382 6.39 0.00 1 0 11 3 656.02466 1966.05942 -0.53 48.96 4564 4564 MS2 31/64 Linfeng_20130201_rIgG_2.raw High HGVQELEIELQSQLSKK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 379 6.39 0.00 1 4 9 3 656.02496 1966.06034 -0.06 49.26 4632 4632 MS2 31/64 Linfeng_20130201_rIgG_10.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 6.38 0.00 0 0 50 3 1075.10071 3223.28757 1.81 34.79 2320 2320 MS2 37/156 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 21 6.14 0.00 0 0 44 3 1075.09900 3223.28244 0.21 26.22 2174 2174 MS2 43/156 Linfeng_20130201_rIgG_10.raw High HGVQELEIELQSQLSK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 410 6.12 0.00 0 4 50 2 919.48865 1837.97002 2.46 51.47 4968 4968 MS2 26/30 Linfeng_20130201_rIgG_1.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 6.11 0.00 0 0 50 3 1075.09900 3223.28244 0.21 25.40 2065 2065 MS2 42/156 Linfeng_20130201_rIgG_2.raw High HGVQELEIELQSQLSKK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 386 6.09 0.00 1 4 22 3 656.02539 1966.06162 0.59 49.34 4680 4680 MS2 29/64 Linfeng_20130201_rIgG_6.raw High HGVQELEIELQSQLSKK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 382 6.03 0.00 1 4 9 3 656.02515 1966.06089 0.22 48.59 4612 4612 MS2 32/64 Linfeng_20130201_rIgG_1.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 100 6.02 0.00 0 2 5 3 902.38995 2705.15531 -2.20 49.22 4662 4662 MS2 39/124 Linfeng_20130201_rIgG_5.raw High NHKEEmSQLTGQNSGDVNVEINVAPGK Unambiguous 1 1 P35527 M6(Oxidation) CID 1.0000 0.0000 1 1 461 6.01 0.00 1 0 50 3 971.13477 2911.38974 1.57 33.09 2908 2908 MS2 40/104 Linfeng_20130201_rIgG_2.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.98 0.00 0 0 24 3 1075.09814 3223.27988 -0.58 25.83 2115 2115 MS2 44/156 Linfeng_20130201_rIgG_8.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.97 0.00 0 0 13 3 1075.09937 3223.28354 0.56 25.76 2138 2138 MS2 44/156 Linfeng_20130201_rIgG_9.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.97 0.00 0 0 44 3 1075.10229 3223.29233 3.28 42.21 3097 3097 MS2 36/156 Linfeng_20130204_CTCF_6.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 130 5.95 0.00 0 6 44 3 902.39258 2705.16318 0.71 52.27 5013 5013 MS2 37/124 Linfeng_20130201_rIgG_6.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 116 5.92 0.00 0 3 7 3 902.39154 2705.16007 -0.44 52.25 5034 5034 MS2 41/124 Linfeng_20130201_rIgG_5.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 128 5.90 0.00 0 17 22 3 902.39215 2705.16190 0.24 52.30 5097 5097 MS2 39/124 Linfeng_20130201_rIgG_8.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.89 0.00 0 0 50 3 1075.09888 3223.28208 0.10 28.13 2379 2379 MS2 37/156 Linfeng_20130201_rIgG_8.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.88 0.00 0 0 50 3 1075.09961 3223.28427 0.78 26.16 2200 2200 MS2 43/156 Linfeng_20130201_rIgG_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.88 0.00 0 0 50 3 1075.09985 3223.28501 1.01 25.40 2089 2089 MS2 43/156 Linfeng_20130201_rIgG_10.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.80 0.00 0 0 50 3 1075.10046 3223.28684 1.58 29.08 2504 2504 MS2 33/156 Linfeng_20130201_rIgG_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.80 0.00 0 0 50 3 1075.09985 3223.28501 1.01 26.09 2224 2224 MS2 43/156 Linfeng_20130201_rIgG_7.raw High HGVQELEIELQSQLSKK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 386 5.80 0.00 1 0 9 3 656.02527 1966.06125 0.40 49.25 4624 4624 MS2 27/64 Linfeng_20130201_rIgG_4.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.79 0.00 0 0 43 3 1075.09985 3223.28501 1.01 25.87 2167 2167 MS2 42/156 Linfeng_20130201_rIgG_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 21 5.74 0.00 0 0 50 3 1075.10327 3223.29526 4.19 41.04 2974 2974 MS2 37/156 Linfeng_20130204_CTCF_6.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 92 5.74 0.00 0 0 3 3 902.38824 2705.15018 -4.09 49.29 4622 4622 MS2 37/124 Linfeng_20130201_rIgG_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.71 0.00 0 0 29 3 1075.09985 3223.28501 1.01 29.68 1812 1812 MS2 40/156 Linfeng_20130204_CTCF_6.raw High HGVQELEIELQSQLSKK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 366 5.71 0.00 1 2 15 3 656.02454 1966.05906 -0.72 49.37 4652 4652 MS2 31/64 Linfeng_20130201_rIgG_9.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.71 0.00 0 0 50 3 1075.10022 3223.28611 1.35 26.74 2233 2233 MS2 38/156 Linfeng_20130201_rIgG_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.70 0.00 0 0 50 3 1075.09937 3223.28354 0.56 26.64 2254 2254 MS2 38/156 Linfeng_20130201_rIgG_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 21 5.69 0.00 0 0 45 3 1075.09912 3223.28281 0.33 42.89 3169 3169 MS2 38/156 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.64 0.00 0 0 50 3 1075.10181 3223.29087 2.83 26.44 2042 2042 MS2 37/156 Linfeng_20130201_rIgG_5.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.62 0.00 0 0 50 3 1075.09973 3223.28464 0.90 26.18 2170 2170 MS2 47/156 Linfeng_20130201_rIgG_3.raw High NHKEEmSQLTGQNSGDVNVEINVAPGK Unambiguous 1 1 P35527 M6(Oxidation) CID 1.0000 0.0000 1 1 395 5.62 0.00 1 0 50 3 971.13062 2911.37729 -2.71 33.04 2902 2902 MS2 40/104 Linfeng_20130201_rIgG_2.raw High NHKEEmSQLTGQNSGDVNVEINVAPGK Unambiguous 1 1 P35527 M6(Oxidation) CID 1.0000 0.0000 1 1 438 5.62 0.00 1 0 50 3 971.13684 2911.39597 3.71 33.48 3048 3048 MS2 35/104 Linfeng_20130201_rIgG_7.raw High GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 8 5.61 0.00 0 2 50 4 1243.99524 4972.95913 4.52 19.37 1298 1298 MS2 49/390 Linfeng_20130201_rIgG_10.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.60 0.00 0 0 40 3 1075.10059 3223.28720 1.69 38.09 2653 2653 MS2 36/156 Linfeng_20130204_CTCF_6.raw High HGVQELEIELQSQLSKK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 354 5.60 0.00 1 0 15 3 656.02618 1966.06400 1.80 49.56 4105 4105 MS2 27/64 Linfeng_20130204_CTCF_7.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.59 0.00 0 6 31 3 1075.10107 3223.28867 2.15 58.63 4920 4920 MS2 38/156 Linfeng_20130204_CTCF_6.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 106 5.58 0.00 0 3 14 3 902.39093 2705.15824 -1.11 52.25 4970 4970 MS2 38/124 Linfeng_20130201_rIgG_10.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 138 5.58 0.00 0 15 50 3 902.39380 2705.16684 2.07 52.26 4956 4956 MS2 33/124 Linfeng_20130201_rIgG_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 12 5.58 0.00 0 22 50 3 1075.09448 3223.26889 -3.99 23.24 1824 1824 MS2 29/156 Linfeng_20130201_rIgG_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 5.55 0.00 0 0 50 3 1075.09644 3223.27475 -2.17 25.70 1968 1968 MS2 40/156 Linfeng_20130201_rIgG_5.raw High NHKEEmSQLTGQNSGDVNVEINVAPGK Unambiguous 1 1 P35527 M6(Oxidation) CID 1.0000 0.0000 1 1 443 5.54 0.00 1 0 50 3 971.13757 2911.39817 4.46 33.37 2952 2952 MS2 35/104 Linfeng_20130201_rIgG_9.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 21 5.54 0.00 0 0 29 3 1075.09875 3223.28171 -0.01 25.68 2119 2119 MS2 43/156 Linfeng_20130201_rIgG_10.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 5.51 0.00 0 0 26 3 1075.09802 3223.27951 -0.69 26.04 2155 2155 MS2 43/156 Linfeng_20130201_rIgG_10.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.50 0.00 0 1 27 3 1075.09888 3223.28208 0.10 32.27 2065 2065 MS2 36/156 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.49 0.00 0 0 50 3 1075.09912 3223.28281 0.33 26.39 2203 2203 MS2 45/156 Linfeng_20130201_rIgG_9.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 91 5.49 0.00 0 4 3 3 902.38934 2705.15348 -2.87 49.30 4631 4631 MS2 42/124 Linfeng_20130201_rIgG_4.raw High NHKEEmSQLTGQNSGDVNVEINVAPGK Unambiguous 1 1 P35527 M6(Oxidation) CID 1.0000 0.0000 1 1 395 5.48 0.00 1 22 50 3 971.13019 2911.37601 -3.15 33.32 2938 2938 MS2 35/104 Linfeng_20130201_rIgG_10.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.47 0.00 0 0 47 3 1075.10107 3223.28867 2.15 35.87 2429 2429 MS2 38/156 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 5.47 0.00 0 0 50 3 1075.09644 3223.27475 -2.17 25.73 2152 2152 MS2 38/156 Linfeng_20130201_rIgG_6.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 31 5.47 0.00 0 1 50 2 896.36938 1791.73149 2.06 19.25 763 763 MS2 26/44 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 5.47 0.00 0 0 50 3 1075.09802 3223.27951 -0.69 26.37 2192 2192 MS2 41/156 Linfeng_20130201_rIgG_10.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.45 0.00 0 0 50 3 1075.09851 3223.28098 -0.24 25.79 2109 2109 MS2 40/156 Linfeng_20130201_rIgG_2.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.44 0.00 0 24 50 3 1075.09814 3223.27988 -0.58 25.46 2096 2096 MS2 35/156 Linfeng_20130201_rIgG_10.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 456 5.43 0.00 1 0 24 2 1189.10352 2377.19975 4.83 49.59 3880 3880 MS2 27/40 Linfeng_20130204_CTCF_6.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 141 5.43 0.00 0 5 36 3 902.39435 2705.16849 2.68 48.84 4017 4017 MS2 34/124 Linfeng_20130204_CTCF_7.raw High HGVQELEIELQSQLSKK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 359 5.43 0.00 1 9 44 3 656.02777 1966.06876 4.22 49.68 4147 4147 MS2 27/64 Linfeng_20130204_CTCF_9.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 567 5.42 0.00 1 0 6 3 793.06866 2377.19144 1.34 49.38 4685 4685 MS2 36/80 Linfeng_20130201_rIgG_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.41 0.00 0 0 50 3 1075.09949 3223.28391 0.67 27.91 2388 2388 MS2 38/156 Linfeng_20130201_rIgG_9.raw High HGVQELEIELQSQLSK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 388 5.40 0.00 0 23 50 2 919.49170 1837.97612 5.78 52.36 4147 4147 MS2 24/30 Linfeng_20130204_CTCF_4.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 104 5.39 0.00 0 3 25 3 902.39050 2705.15696 -1.59 52.29 4514 4514 MS2 34/124 Linfeng_20130204_CTCF_8.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.39 0.00 0 0 50 3 1075.10046 3223.28684 1.58 26.32 2217 2217 MS2 39/156 Linfeng_20130201_rIgG_6.raw High HGVQELEIELQSQLSK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 423 5.38 0.00 0 18 50 2 919.48492 1837.96257 -1.59 52.33 4160 4160 MS2 26/30 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.38 0.00 0 0 50 3 1075.09875 3223.28171 -0.01 26.45 2201 2201 MS2 36/156 Linfeng_20130201_rIgG_10.raw High GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 8 5.36 0.00 0 0 50 4 1243.99072 4972.94106 0.89 20.35 1437 1437 MS2 42/390 Linfeng_20130201_rIgG_9.raw High GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 9 5.35 0.00 0 0 50 4 1243.98889 4972.93374 -0.59 20.54 1459 1459 MS2 46/390 Linfeng_20130201_rIgG_10.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 5.34 0.00 0 0 50 3 1075.09753 3223.27805 -1.15 26.35 2175 2175 MS2 35/156 Linfeng_20130201_rIgG_2.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 567 5.33 0.00 1 0 13 3 793.06805 2377.18961 0.57 49.12 4584 4584 MS2 36/80 Linfeng_20130201_rIgG_2.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.33 0.00 0 0 26 3 1075.09973 3223.28464 0.90 40.41 2903 2903 MS2 35/156 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.33 0.00 0 2 50 3 1075.09851 3223.28098 -0.24 25.46 2105 2105 MS2 40/156 Linfeng_20130201_rIgG_9.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.32 0.00 0 2 50 3 1075.09888 3223.28208 0.10 25.54 2114 2114 MS2 38/156 Linfeng_20130201_rIgG_9.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.30 0.00 0 0 50 3 1075.09912 3223.28281 0.33 26.62 2221 2221 MS2 39/156 Linfeng_20130201_rIgG_10.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.29 0.00 0 0 50 3 1075.09875 3223.28171 -0.01 25.70 2115 2115 MS2 36/156 Linfeng_20130201_rIgG_1.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 16 5.29 0.00 0 0 50 3 1075.09497 3223.27036 -3.53 24.19 1933 1933 MS2 33/156 Linfeng_20130201_rIgG_10.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 21 5.29 0.00 0 1 50 3 1075.09937 3223.28354 0.56 26.23 2207 2207 MS2 42/156 Linfeng_20130201_rIgG_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 21 5.29 0.00 0 0 50 3 1075.09998 3223.28537 1.12 25.91 1618 1618 MS2 40/156 Linfeng_20130204_CTCF_9.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.29 0.00 0 0 50 3 1075.09900 3223.28244 0.21 27.03 2265 2265 MS2 39/156 Linfeng_20130201_rIgG_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 5.25 0.00 0 5 50 3 1075.09668 3223.27549 -1.94 29.35 2554 2554 MS2 40/156 Linfeng_20130201_rIgG_9.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 112 5.25 0.00 0 14 50 3 902.39111 2705.15879 -0.91 52.27 4938 4938 MS2 44/124 Linfeng_20130201_rIgG_2.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.25 0.00 0 1 30 3 1075.10059 3223.28720 1.69 31.83 2021 2021 MS2 41/156 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.23 0.00 0 0 50 3 1075.09888 3223.28208 0.10 26.74 2234 2234 MS2 40/156 Linfeng_20130201_rIgG_10.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.23 0.00 0 1 50 3 1075.09949 3223.28391 0.67 26.10 1638 1638 MS2 32/156 Linfeng_20130204_CTCF_8.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.23 0.00 0 0 50 3 1075.09900 3223.28244 0.21 29.41 2555 2555 MS2 39/156 Linfeng_20130201_rIgG_10.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 12 5.22 0.00 0 8 50 3 1075.09326 3223.26523 -5.13 31.20 2730 2730 MS2 40/156 Linfeng_20130201_rIgG_10.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 5.22 0.00 0 0 50 3 1075.09802 3223.27951 -0.69 32.19 2836 2836 MS2 35/156 Linfeng_20130201_rIgG_9.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.20 0.00 0 0 15 3 1075.10095 3223.28830 2.03 27.36 1588 1588 MS2 35/156 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 21 5.20 0.00 0 0 50 3 1075.09937 3223.28354 0.56 25.94 1992 1992 MS2 44/156 Linfeng_20130201_rIgG_5.raw High NHKEEmSQLTGQNSGDVNVEINVAPGK Unambiguous 1 1 P35527 M6(Oxidation) CID 1.0000 0.0000 1 1 459 5.19 0.00 1 0 50 3 971.13525 2911.39121 2.07 33.31 2917 2917 MS2 37/104 Linfeng_20130201_rIgG_4.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.18 0.00 0 0 23 3 1075.09888 3223.28208 0.10 33.16 2155 2155 MS2 37/156 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.18 0.00 0 0 50 3 1075.09875 3223.28171 -0.01 26.60 2228 2228 MS2 36/156 Linfeng_20130201_rIgG_9.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 21 5.17 0.00 0 0 31 3 1075.10034 3223.28647 1.46 29.34 1779 1779 MS2 34/156 Linfeng_20130204_CTCF_6.raw High NHKEEmSQLTGQNSGDVNVEINVAPGK Unambiguous 1 1 P35527 M6(Oxidation) CID 1.0000 0.0000 1 1 444 5.17 0.00 1 0 50 3 971.13629 2911.39432 3.14 33.48 2508 2508 MS2 34/104 Linfeng_20130204_CTCF_2.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.17 0.00 0 0 50 3 1075.09937 3223.28354 0.56 32.64 2881 2881 MS2 33/156 Linfeng_20130201_rIgG_9.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.16 0.00 0 0 50 3 1075.09814 3223.27988 -0.58 26.82 2226 2226 MS2 37/156 Linfeng_20130201_rIgG_8.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.14 0.00 0 2 50 3 1075.10181 3223.29087 2.83 30.97 1937 1937 MS2 36/156 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.13 0.00 0 2 50 3 1075.09985 3223.28501 1.01 26.86 2246 2246 MS2 32/156 Linfeng_20130201_rIgG_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.11 0.00 0 0 50 3 1075.09998 3223.28537 1.12 26.22 1650 1650 MS2 38/156 Linfeng_20130204_CTCF_9.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 21 5.11 0.00 0 1 24 3 1075.09937 3223.28354 0.56 30.14 1856 1856 MS2 37/156 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.11 0.00 0 64 50 3 1075.09839 3223.28061 -0.35 25.54 2098 2098 MS2 39/156 Linfeng_20130201_rIgG_1.raw High GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 9 5.10 0.00 0 3 50 4 1243.98926 4972.93520 -0.29 20.29 1421 1421 MS2 42/390 Linfeng_20130201_rIgG_8.raw High HGVQELEIELQSQLSKK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 354 5.09 0.00 1 3 50 3 656.02814 1966.06986 4.78 49.46 3847 3847 MS2 27/64 Linfeng_20130204_CTCF_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.09 0.00 0 0 29 3 1075.09839 3223.28061 -0.35 33.83 2223 2223 MS2 31/156 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.09 0.00 0 0 50 3 1075.09998 3223.28537 1.12 26.91 2285 2285 MS2 28/156 Linfeng_20130201_rIgG_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.08 0.00 0 0 50 3 1075.10010 3223.28574 1.24 32.23 2831 2831 MS2 30/156 Linfeng_20130201_rIgG_10.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 566 5.07 0.00 1 1 2 3 793.06812 2377.18979 0.64 49.37 4632 4632 MS2 32/80 Linfeng_20130201_rIgG_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.07 0.00 0 0 50 3 1075.09973 3223.28464 0.90 26.52 1692 1692 MS2 31/156 Linfeng_20130204_CTCF_7.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 92 5.07 0.00 0 0 11 3 902.38947 2705.15384 -2.74 49.26 4179 4179 MS2 33/124 Linfeng_20130204_CTCF_1.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.07 0.00 0 0 50 3 1075.09961 3223.28427 0.78 25.55 2106 2106 MS2 39/156 Linfeng_20130201_rIgG_10.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 92 5.06 0.00 0 0 6 3 902.38831 2705.15036 -4.02 49.18 4591 4591 MS2 35/124 Linfeng_20130201_rIgG_2.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.06 0.00 0 75 50 3 1075.09961 3223.28427 0.78 30.62 2674 2674 MS2 34/156 Linfeng_20130201_rIgG_10.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 61 5.06 0.00 0 0 11 3 902.38513 2705.14084 -7.54 49.42 4730 4730 MS2 37/124 Linfeng_20130201_rIgG_7.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 567 5.05 0.00 1 1 5 3 793.06818 2377.18998 0.72 49.32 4633 4633 MS2 35/80 Linfeng_20130201_rIgG_4.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.05 0.00 0 0 29 3 1075.10278 3223.29380 3.74 26.08 1447 1447 MS2 41/156 Linfeng_20130204_CTCF_3.raw High HGVQELEIELQSQLSKK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 349 5.05 0.00 1 20 50 3 656.02844 1966.07077 5.25 49.72 3875 3875 MS2 25/64 Linfeng_20130204_CTCF_4.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.04 0.00 0 0 50 3 1075.10364 3223.29636 4.53 47.97 3708 3708 MS2 33/156 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.03 0.00 0 0 34 3 1075.10083 3223.28794 1.92 39.39 2794 2794 MS2 37/156 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.03 0.00 0 76 50 3 1075.09961 3223.28427 0.78 26.73 2264 2264 MS2 35/156 Linfeng_20130201_rIgG_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.02 0.00 0 0 50 3 1075.09937 3223.28354 0.56 48.72 3785 3785 MS2 30/156 Linfeng_20130204_CTCF_6.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 199 5.02 0.00 0 1 2 3 837.38147 2510.12986 -0.80 45.25 4167 4167 MS2 33/88 Linfeng_20130201_rIgG_10.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.02 0.00 0 0 50 3 1075.09924 3223.28318 0.44 26.90 2260 2260 MS2 38/156 Linfeng_20130201_rIgG_9.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 5.01 0.00 0 0 50 3 1075.09790 3223.27915 -0.81 28.42 2453 2453 MS2 32/156 Linfeng_20130201_rIgG_9.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 5.00 0.00 0 0 50 3 1075.10059 3223.28720 1.69 25.34 2081 2081 MS2 35/156 Linfeng_20130201_rIgG_10.raw High HGVQELEIELQSQLSKK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 356 5.00 0.00 1 12 50 3 656.02649 1966.06491 2.27 50.15 4140 4140 MS2 26/64 Linfeng_20130204_CTCF_10.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.99 0.00 0 0 50 3 1075.09888 3223.28208 0.10 24.46 1940 1940 MS2 41/156 Linfeng_20130201_rIgG_4.raw High HGVQELEIELQSQLSKK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 380 4.99 0.00 1 3 16 3 656.02441 1966.05869 -0.90 49.37 3854 3854 MS2 25/64 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 19 4.99 0.00 0 0 50 3 1075.09766 3223.27842 -1.03 26.95 2256 2256 MS2 35/156 Linfeng_20130201_rIgG_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 21 4.95 0.00 0 0 28 3 1075.09998 3223.28537 1.12 36.23 2465 2465 MS2 34/156 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.95 0.00 0 77 50 3 1075.10022 3223.28611 1.35 28.93 2505 2505 MS2 31/156 Linfeng_20130201_rIgG_10.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.95 0.00 0 0 50 3 1075.09851 3223.28098 -0.24 26.54 2195 2195 MS2 36/156 Linfeng_20130201_rIgG_8.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 21 4.94 0.00 0 0 41 3 1075.09924 3223.28318 0.44 26.14 1642 1642 MS2 37/156 Linfeng_20130204_CTCF_9.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 21 4.93 0.00 0 0 48 3 1075.10181 3223.29087 2.83 36.78 2520 2520 MS2 36/156 Linfeng_20130204_CTCF_6.raw High GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 8 4.92 0.00 0 1 50 4 1243.99182 4972.94546 1.77 19.83 1362 1362 MS2 51/390 Linfeng_20130201_rIgG_8.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 21 4.91 0.00 0 0 50 3 1075.10364 3223.29636 4.53 51.41 4069 4069 MS2 35/156 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.91 0.00 0 2 50 3 1075.10083 3223.28794 1.92 26.74 1784 1784 MS2 34/156 Linfeng_20130204_CTCF_2.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 21 4.91 0.00 0 0 50 3 1075.09888 3223.28208 0.10 25.88 1615 1615 MS2 33/156 Linfeng_20130204_CTCF_8.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 90 4.90 0.00 0 39 6 3 902.38873 2705.15165 -3.55 49.32 4741 4741 MS2 36/124 Linfeng_20130201_rIgG_8.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.90 0.00 0 73 50 3 1075.10010 3223.28574 1.24 28.44 2436 2436 MS2 33/156 Linfeng_20130201_rIgG_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.90 0.00 0 0 26 3 1075.09973 3223.28464 0.90 39.85 2844 2844 MS2 32/156 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 4.89 0.00 0 0 50 3 1075.09692 3223.27622 -1.72 31.47 2766 2766 MS2 34/156 Linfeng_20130201_rIgG_9.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.89 0.00 0 0 50 3 1075.09875 3223.28171 -0.01 26.55 2244 2244 MS2 39/156 Linfeng_20130201_rIgG_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.89 0.00 0 0 50 3 1075.09961 3223.28427 0.78 26.39 2225 2225 MS2 39/156 Linfeng_20130201_rIgG_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.89 0.00 0 0 50 3 1075.09900 3223.28244 0.21 27.72 2346 2346 MS2 36/156 Linfeng_20130201_rIgG_2.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.88 0.00 0 6 50 3 1075.09863 3223.28135 -0.13 24.68 1862 1862 MS2 39/156 Linfeng_20130201_rIgG_5.raw High HGVQELEIELQSQLSKK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 352 4.87 0.00 1 41 42 3 656.02649 1966.06491 2.27 49.90 4228 4228 MS2 25/64 Linfeng_20130204_CTCF_2.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.86 0.00 0 0 50 3 1075.09827 3223.28025 -0.47 25.65 2096 2096 MS2 30/156 Linfeng_20130201_rIgG_8.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.86 0.00 0 2 50 3 1075.10205 3223.29160 3.06 34.40 2281 2281 MS2 36/156 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.86 0.00 0 0 50 3 1075.09961 3223.28427 0.78 26.24 2159 2159 MS2 35/156 Linfeng_20130201_rIgG_4.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 94 4.86 0.00 0 3 12 3 902.38916 2705.15293 -3.08 49.57 3858 3858 MS2 31/124 Linfeng_20130204_CTCF_4.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 4.85 0.00 0 0 50 3 1075.09790 3223.27915 -0.81 26.91 2236 2236 MS2 36/156 Linfeng_20130201_rIgG_8.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 572 4.85 0.00 1 64 6 3 793.06598 2377.18338 -2.05 48.93 4657 4657 MS2 37/80 Linfeng_20130201_rIgG_1.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.85 0.00 0 0 50 3 1075.10034 3223.28647 1.46 27.31 2297 2297 MS2 30/156 Linfeng_20130201_rIgG_3.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 115 4.84 0.00 0 0 6 2 1353.08459 2705.16191 0.24 49.31 4625 4625 MS2 28/62 Linfeng_20130201_rIgG_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.84 0.00 0 0 50 3 1075.09900 3223.28244 0.21 27.21 2285 2285 MS2 31/156 Linfeng_20130201_rIgG_3.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 91 4.84 0.00 0 0 21 3 902.38867 2705.15146 -3.62 49.53 3855 3855 MS2 31/124 Linfeng_20130204_CTCF_3.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 81 4.83 0.00 0 1 5 3 902.38770 2705.14853 -4.70 49.41 4168 4168 MS2 38/124 Linfeng_20130204_CTCF_2.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 12 4.82 0.00 0 0 50 3 1075.09424 3223.26816 -4.22 29.04 2500 2500 MS2 33/156 Linfeng_20130201_rIgG_3.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 33 4.82 0.00 0 18 50 2 896.36932 1791.73137 1.99 51.23 4051 4051 MS2 21/44 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.82 0.00 0 0 50 3 1075.09888 3223.28208 0.10 31.89 2797 2797 MS2 36/156 Linfeng_20130201_rIgG_10.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.82 0.00 0 0 50 3 1075.09814 3223.27988 -0.58 30.10 2629 2629 MS2 33/156 Linfeng_20130201_rIgG_9.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 121 4.81 0.00 0 0 6 2 1353.08655 2705.16582 1.69 49.41 4644 4644 MS2 28/62 Linfeng_20130201_rIgG_4.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.80 0.00 0 0 18 3 1075.10022 3223.28611 1.35 28.89 1735 1735 MS2 34/156 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.80 0.00 0 0 50 3 1075.09985 3223.28501 1.01 26.50 1681 1681 MS2 36/156 Linfeng_20130204_CTCF_9.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 107 4.79 0.00 0 0 3 2 1353.08521 2705.16313 0.70 49.46 4643 4643 MS2 29/62 Linfeng_20130201_rIgG_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.79 0.00 0 0 50 3 1075.10083 3223.28794 1.92 25.69 2148 2148 MS2 34/156 Linfeng_20130201_rIgG_6.raw High GSRGGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 51 4.79 0.00 1 0 50 2 1046.44482 2091.88237 -0.02 16.71 941 941 MS2 23/50 Linfeng_20130201_rIgG_2.raw High NHKEEMSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 409 4.78 0.00 2 4 29 4 838.91827 3352.65127 2.19 39.02 2752 2752 MS2 48/180 Linfeng_20130204_CTCF_6.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 101 4.78 0.00 0 0 13 2 1353.08459 2705.16191 0.24 58.45 4900 4900 MS2 26/62 Linfeng_20130204_CTCF_6.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 129 4.76 0.00 0 0 12 2 1353.08813 2705.16899 2.86 49.53 4101 4101 MS2 25/62 Linfeng_20130204_CTCF_7.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 4.76 0.00 0 0 50 3 1075.09741 3223.27768 -1.26 31.25 2744 2744 MS2 28/156 Linfeng_20130201_rIgG_9.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.75 0.00 0 0 37 3 1075.09937 3223.28354 0.56 37.64 2607 2607 MS2 34/156 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.75 0.00 0 0 50 3 1075.10034 3223.28647 1.46 26.65 2063 2063 MS2 32/156 Linfeng_20130201_rIgG_5.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.75 0.00 0 0 50 3 1075.09912 3223.28281 0.33 26.61 2203 2203 MS2 39/156 Linfeng_20130201_rIgG_4.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.74 0.00 0 0 50 3 1075.09924 3223.28318 0.44 29.67 2586 2586 MS2 33/156 Linfeng_20130201_rIgG_9.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 108 4.73 0.00 0 3 34 3 902.39105 2705.15860 -0.98 52.29 5047 5047 MS2 33/124 Linfeng_20130201_rIgG_7.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.72 0.00 0 0 50 3 1075.10034 3223.28647 1.46 34.44 3058 3058 MS2 32/156 Linfeng_20130201_rIgG_9.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.72 0.00 0 0 50 3 1075.10168 3223.29050 2.71 36.54 2496 2496 MS2 33/156 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 21 4.72 0.00 0 0 21 3 1075.10059 3223.28720 1.69 28.43 1691 1691 MS2 34/156 Linfeng_20130204_CTCF_6.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 213 4.71 0.00 0 1 7 3 837.38348 2510.13590 1.60 45.37 4266 4266 MS2 32/88 Linfeng_20130201_rIgG_7.raw High HGVQELEIELQSQLSK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 469 4.70 0.00 0 5 14 3 613.32678 1837.96579 0.16 50.28 4724 4724 MS2 33/60 Linfeng_20130201_rIgG_2.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 568 4.70 0.00 1 4 13 3 793.06982 2377.19492 2.80 49.64 4116 4116 MS2 25/80 Linfeng_20130204_CTCF_7.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 542 4.70 0.00 1 5 46 3 793.07202 2377.20151 5.57 49.14 4166 4166 MS2 34/80 Linfeng_20130204_CTCF_1.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.69 0.00 0 0 31 3 1075.10046 3223.28684 1.58 46.70 3575 3575 MS2 30/156 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.69 0.00 0 0 50 3 1075.10364 3223.29636 4.53 26.22 1450 1450 MS2 39/156 Linfeng_20130204_CTCF_4.raw High GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 7 4.69 0.00 0 0 50 4 1243.98706 4972.92641 -2.06 20.81 1500 1500 MS2 47/390 Linfeng_20130201_rIgG_9.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.69 0.00 0 0 50 3 1075.09912 3223.28281 0.33 26.43 2182 2182 MS2 38/156 Linfeng_20130201_rIgG_4.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 61 4.68 0.00 0 0 11 3 902.38513 2705.14084 -7.54 49.39 4687 4687 MS2 32/124 Linfeng_20130201_rIgG_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.68 0.00 0 0 50 3 1075.09961 3223.28427 0.78 25.59 2107 2107 MS2 29/156 Linfeng_20130201_rIgG_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 4.68 0.00 0 20 50 3 1075.09607 3223.27365 -2.51 25.42 1940 1940 MS2 35/156 Linfeng_20130201_rIgG_5.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 85 4.67 0.00 0 2 6 3 902.38794 2705.14927 -4.43 48.97 4662 4662 MS2 36/124 Linfeng_20130201_rIgG_1.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 14 4.66 0.00 0 0 28 3 1075.09473 3223.26963 -3.76 39.65 2822 2822 MS2 36/156 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.66 0.00 0 3 50 3 1075.09851 3223.28098 -0.24 26.44 2273 2273 MS2 35/156 Linfeng_20130201_rIgG_7.raw High NHKEEmSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 P35527 M6(Oxidation) CID 1.0000 0.0000 1 1 384 4.65 0.00 2 0 50 3 1123.55371 3368.64658 2.30 35.62 2619 2619 MS2 36/120 Linfeng_20130204_CTCF_7.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 92 4.64 0.00 0 0 10 2 1353.08337 2705.15947 -0.66 49.60 4138 4138 MS2 26/62 Linfeng_20130204_CTCF_9.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 59 4.64 0.00 0 3 6 3 902.38458 2705.13919 -8.15 49.35 4643 4643 MS2 41/124 Linfeng_20130201_rIgG_10.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 113 4.64 0.00 0 12 10 2 1353.08594 2705.16460 1.24 49.02 4668 4668 MS2 29/62 Linfeng_20130201_rIgG_1.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 32 4.64 0.00 0 0 50 2 896.36884 1791.73039 1.45 17.88 1096 1096 MS2 21/44 Linfeng_20130201_rIgG_1.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 168 4.64 0.00 0 15 50 3 902.39758 2705.17820 6.26 52.24 4465 4465 MS2 33/124 Linfeng_20130204_CTCF_2.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.64 0.00 0 0 50 3 1075.10205 3223.29160 3.06 27.25 2325 2325 MS2 34/156 Linfeng_20130201_rIgG_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.63 0.00 0 0 50 3 1075.10034 3223.28647 1.46 30.04 2617 2617 MS2 38/156 Linfeng_20130201_rIgG_10.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 21 4.63 0.00 0 0 6 3 1075.09998 3223.28537 1.12 26.70 1524 1524 MS2 34/156 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.63 0.00 0 0 50 3 1075.10034 3223.28647 1.46 27.04 1817 1817 MS2 33/156 Linfeng_20130204_CTCF_2.raw High GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 8 4.63 0.00 0 30 50 4 1243.99121 4972.94301 1.28 22.03 1663 1663 MS2 54/390 Linfeng_20130201_rIgG_10.raw High NHKEEmSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 P35527 M6(Oxidation) CID 1.0000 0.0000 1 1 390 4.63 0.00 2 0 50 4 842.91498 3368.63808 -0.23 35.25 3126 3126 MS2 44/180 Linfeng_20130201_rIgG_3.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 127 4.62 0.00 0 3 50 2 1353.08777 2705.16826 2.59 49.95 4117 4117 MS2 27/62 Linfeng_20130204_CTCF_10.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 210 4.62 0.00 0 6 11 3 837.38318 2510.13498 1.24 45.20 4146 4146 MS2 32/88 Linfeng_20130201_rIgG_5.raw High NHKEEmSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 P35527 M6(Oxidation) CID 1.0000 0.0000 1 1 392 4.62 0.00 2 3 50 4 842.91418 3368.63491 -1.17 35.23 3108 3108 MS2 44/180 Linfeng_20130201_rIgG_4.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 142 4.62 0.00 0 5 13 3 902.39374 2705.16666 2.00 50.43 3970 3970 MS2 33/124 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.61 0.00 0 0 50 3 1075.09888 3223.28208 0.10 25.54 2102 2102 MS2 32/156 Linfeng_20130201_rIgG_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.60 0.00 0 0 36 3 1075.10059 3223.28720 1.69 38.70 2719 2719 MS2 36/156 Linfeng_20130204_CTCF_6.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 90 4.59 0.00 0 4 7 2 1353.08325 2705.15923 -0.75 52.28 4155 4155 MS2 26/62 Linfeng_20130204_CTCF_6.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 571 4.58 0.00 1 1 4 3 793.06848 2377.19089 1.11 49.41 4658 4658 MS2 32/80 Linfeng_20130201_rIgG_9.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.58 0.00 0 0 50 3 1075.10083 3223.28794 1.92 26.74 1514 1514 MS2 28/156 Linfeng_20130204_CTCF_3.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 105 4.57 0.00 0 12 19 3 902.39087 2705.15805 -1.18 58.40 5138 5138 MS2 32/124 Linfeng_20130204_CTCF_7.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.55 0.00 0 0 50 3 1075.09888 3223.28208 0.10 26.72 2215 2215 MS2 34/156 Linfeng_20130201_rIgG_8.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 101 4.54 0.00 0 7 16 2 1353.08289 2705.15849 -1.02 49.41 4177 4177 MS2 26/62 Linfeng_20130204_CTCF_8.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 551 4.54 0.00 1 2 46 3 793.07227 2377.20224 5.88 49.67 4146 4146 MS2 32/80 Linfeng_20130204_CTCF_9.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.54 0.00 0 0 50 3 1075.10071 3223.28757 1.81 25.75 1674 1674 MS2 35/156 Linfeng_20130204_CTCF_2.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.53 0.00 0 0 50 3 1075.09875 3223.28171 -0.01 23.30 1824 1824 MS2 36/156 Linfeng_20130201_rIgG_10.raw High VQALEEANNDLENK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 385 4.53 0.00 0 0 50 2 793.88672 1586.76616 0.27 33.48 2965 2965 MS2 23/26 Linfeng_20130201_rIgG_1.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.53 0.00 0 0 50 3 1075.09839 3223.28061 -0.35 27.88 2374 2374 MS2 35/156 Linfeng_20130201_rIgG_10.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 130 4.53 0.00 0 0 50 2 1353.08911 2705.17095 3.58 50.57 3984 3984 MS2 27/62 Linfeng_20130204_CTCF_6.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 30 4.53 0.00 0 2 50 2 896.36896 1791.73064 1.58 20.29 874 874 MS2 24/44 Linfeng_20130204_CTCF_6.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 25 4.52 0.00 0 0 50 2 896.36560 1791.72392 -2.16 18.11 1095 1095 MS2 25/44 Linfeng_20130201_rIgG_5.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.52 0.00 0 0 50 3 1075.10144 3223.28977 2.49 26.82 2319 2319 MS2 37/156 Linfeng_20130201_rIgG_7.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.51 0.00 0 2 26 3 1075.10034 3223.28647 1.46 45.36 3435 3435 MS2 34/156 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.50 0.00 0 0 43 3 1075.09851 3223.28098 -0.24 46.95 3600 3600 MS2 34/156 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.50 0.00 0 1 50 3 1075.09985 3223.28501 1.01 26.31 1583 1583 MS2 34/156 Linfeng_20130204_CTCF_10.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.49 0.00 0 0 50 3 1075.09827 3223.28025 -0.47 26.09 2145 2145 MS2 39/156 Linfeng_20130201_rIgG_2.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 172 4.49 0.00 0 0 29 3 902.40051 2705.18698 9.51 52.31 4404 4404 MS2 33/124 Linfeng_20130204_CTCF_7.raw High VQALEEANNDLENK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 388 4.49 0.00 0 66 50 2 793.88684 1586.76641 0.42 33.93 2995 2995 MS2 23/26 Linfeng_20130201_rIgG_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 21 4.47 0.00 0 0 50 3 1075.09961 3223.28427 0.78 23.37 1839 1839 MS2 31/156 Linfeng_20130201_rIgG_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 4.46 0.00 0 0 50 3 1075.09705 3223.27658 -1.60 23.46 1814 1814 MS2 33/156 Linfeng_20130201_rIgG_4.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.46 0.00 0 0 21 3 1075.09924 3223.28318 0.44 33.36 2176 2176 MS2 35/156 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.46 0.00 0 0 50 3 1075.09851 3223.28098 -0.24 29.64 2577 2577 MS2 35/156 Linfeng_20130201_rIgG_10.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 200 4.45 0.00 0 3 7 3 837.38202 2510.13150 -0.15 44.81 4156 4156 MS2 32/88 Linfeng_20130201_rIgG_1.raw High NHKEEMSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 415 4.45 0.00 2 5 17 4 838.91742 3352.64785 1.17 40.19 2880 2880 MS2 41/180 Linfeng_20130204_CTCF_6.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 551 4.45 0.00 1 5 16 3 793.06903 2377.19254 1.80 49.44 4732 4732 MS2 34/80 Linfeng_20130201_rIgG_7.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 4.45 0.00 0 0 50 3 1075.09790 3223.27915 -0.81 25.57 2102 2102 MS2 36/156 Linfeng_20130201_rIgG_1.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 4.45 0.00 0 0 50 3 1075.09692 3223.27622 -1.72 28.02 2388 2388 MS2 35/156 Linfeng_20130201_rIgG_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.45 0.00 0 20 50 3 1075.09863 3223.28135 -0.13 28.71 2464 2464 MS2 38/156 Linfeng_20130201_rIgG_3.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 321 4.45 0.00 0 25 50 2 616.80316 1232.59905 0.94 22.19 1693 1693 MS2 22/30 Linfeng_20130201_rIgG_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.45 0.00 0 0 32 3 1075.10229 3223.29233 3.28 44.26 3316 3316 MS2 32/156 Linfeng_20130204_CTCF_6.raw High NHKEEmSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 P35527 M6(Oxidation) CID 1.0000 0.0000 1 1 392 4.45 0.00 2 11 45 4 842.91516 3368.63881 -0.01 35.33 3231 3231 MS2 44/180 Linfeng_20130201_rIgG_7.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.44 0.00 0 0 50 3 1075.10059 3223.28720 1.69 33.04 2911 2911 MS2 35/156 Linfeng_20130201_rIgG_10.raw High HGVQELEIELQSQLSK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 433 4.44 0.00 0 16 50 3 613.32666 1837.96543 -0.03 51.78 4909 4909 MS2 31/60 Linfeng_20130201_rIgG_3.raw High VQALEEANNDLENK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 360 4.44 0.00 0 0 50 2 793.88593 1586.76457 -0.73 33.60 2958 2958 MS2 22/26 Linfeng_20130201_rIgG_2.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 111 4.43 0.00 0 2 11 3 902.39117 2705.15897 -0.84 49.41 3860 3860 MS2 35/124 Linfeng_20130204_CTCF_6.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 108 4.42 0.00 0 0 7 2 1353.08423 2705.16118 -0.03 49.23 4663 4663 MS2 26/62 Linfeng_20130201_rIgG_5.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 130 4.41 0.00 0 26 6 3 902.39319 2705.16501 1.39 49.51 4191 4191 MS2 32/124 Linfeng_20130204_CTCF_8.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.41 0.00 0 0 50 3 1075.09827 3223.28025 -0.47 33.39 2955 2955 MS2 35/156 Linfeng_20130201_rIgG_9.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 21 4.40 0.00 0 0 50 3 1075.10168 3223.29050 2.71 48.53 3766 3766 MS2 33/156 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.40 0.00 0 0 50 3 1075.09924 3223.28318 0.44 25.59 2082 2082 MS2 34/156 Linfeng_20130201_rIgG_4.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 21 4.40 0.00 0 0 50 3 1075.10303 3223.29453 3.96 34.57 2298 2298 MS2 33/156 Linfeng_20130204_CTCF_6.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 118 4.40 0.00 0 0 5 2 1353.08667 2705.16606 1.78 49.50 3870 3870 MS2 28/62 Linfeng_20130204_CTCF_6.raw High HGVQELEIELQSQLSK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 438 4.40 0.00 0 0 6 3 613.32739 1837.96762 1.16 51.39 4959 4959 MS2 32/60 Linfeng_20130201_rIgG_1.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.40 0.00 0 0 50 3 1075.09900 3223.28244 0.21 26.31 1659 1659 MS2 33/156 Linfeng_20130204_CTCF_8.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.39 0.00 0 2 50 3 1075.10205 3223.29160 3.06 41.45 3017 3017 MS2 32/156 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 16 4.39 0.00 0 0 50 3 1075.09497 3223.27036 -3.53 28.63 2456 2456 MS2 35/156 Linfeng_20130201_rIgG_3.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 346 4.38 0.00 0 0 50 2 616.80280 1232.59831 0.34 23.33 1198 1198 MS2 25/30 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.38 0.00 0 0 50 3 1075.09814 3223.27988 -0.58 26.61 2203 2203 MS2 40/156 Linfeng_20130201_rIgG_8.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.37 0.00 0 0 49 3 1075.09937 3223.28354 0.56 25.81 1702 1702 MS2 31/156 Linfeng_20130204_CTCF_1.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 120 4.37 0.00 0 0 9 2 1353.08716 2705.16704 2.14 49.46 4657 4657 MS2 26/62 Linfeng_20130201_rIgG_10.raw High GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 8 4.36 0.00 0 0 50 4 1243.99316 4972.95083 2.85 19.28 1288 1288 MS2 45/390 Linfeng_20130201_rIgG_8.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 119 4.36 0.00 0 0 8 2 1353.08765 2705.16802 2.50 49.47 4697 4697 MS2 29/62 Linfeng_20130201_rIgG_6.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 569 4.36 0.00 1 1 2 3 793.06995 2377.19529 2.95 49.42 4652 4652 MS2 33/80 Linfeng_20130201_rIgG_10.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.36 0.00 0 0 31 3 1075.09924 3223.28318 0.44 46.48 3554 3554 MS2 35/156 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.36 0.00 0 0 50 3 1075.09814 3223.27988 -0.58 51.44 4889 4889 MS2 37/156 Linfeng_20130201_rIgG_10.raw High NHKEEmSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 P35527 M6(Oxidation) CID 1.0000 0.0000 1 1 389 4.35 0.00 2 11 35 4 842.91479 3368.63735 -0.44 35.35 3149 3149 MS2 40/180 Linfeng_20130201_rIgG_9.raw High NHKEEmSQLTGQNSGDVNVEINVAPGK Unambiguous 1 1 P35527 M6(Oxidation) CID 1.0000 0.0000 1 1 462 4.35 0.00 1 0 50 3 971.13544 2911.39176 2.26 33.51 2953 2953 MS2 37/104 Linfeng_20130201_rIgG_3.raw High NHKEEmSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 P35527 M6(Oxidation) CID 1.0000 0.0000 1 1 391 4.35 0.00 2 3 50 4 842.91956 3368.65639 5.21 35.56 2599 2599 MS2 38/180 Linfeng_20130204_CTCF_8.raw High NHKEEmSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 P35527 M6(Oxidation) CID 1.0000 0.0000 1 1 388 4.35 0.00 2 20 26 4 842.91492 3368.63784 -0.30 35.30 3133 3133 MS2 46/180 Linfeng_20130201_rIgG_10.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.34 0.00 0 1 50 3 1075.09888 3223.28208 0.10 26.87 2248 2248 MS2 31/156 Linfeng_20130201_rIgG_10.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.34 0.00 0 0 50 3 1075.09973 3223.28464 0.90 48.33 3746 3746 MS2 37/156 Linfeng_20130204_CTCF_6.raw High GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 9 4.34 0.00 0 1 44 4 1243.99048 4972.94008 0.69 29.92 1835 1835 MS2 45/390 Linfeng_20130204_CTCF_6.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 28 4.34 0.00 0 0 50 2 896.36731 1791.72734 -0.26 30.09 1851 1851 MS2 20/44 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.33 0.00 0 0 50 3 1075.09985 3223.28501 1.01 26.80 2240 2240 MS2 33/156 Linfeng_20130201_rIgG_10.raw High NHKEEmSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 P35527 M6(Oxidation) CID 1.0000 0.0000 1 1 408 4.33 0.00 2 7 27 4 842.91437 3368.63564 -0.95 35.68 2647 2647 MS2 37/180 Linfeng_20130204_CTCF_9.raw High GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 8 4.33 0.00 0 0 50 4 1243.99133 4972.94350 1.38 20.58 1464 1464 MS2 46/390 Linfeng_20130201_rIgG_10.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.32 0.00 0 0 50 3 1075.09888 3223.28208 0.10 26.35 1664 1664 MS2 32/156 Linfeng_20130204_CTCF_9.raw High HGVQELEIELQSQLSKK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 357 4.32 0.00 1 9 50 3 656.02618 1966.06400 1.80 50.56 3983 3983 MS2 20/64 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.32 0.00 0 0 50 3 1075.10205 3223.29160 3.06 30.04 2607 2607 MS2 32/156 Linfeng_20130201_rIgG_3.raw High VQALEEANNDLENK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 387 4.31 0.00 0 0 50 2 793.88684 1586.76641 0.42 32.76 2883 2883 MS2 22/26 Linfeng_20130201_rIgG_10.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.31 0.00 0 0 50 3 1075.09937 3223.28354 0.56 26.35 2171 2171 MS2 37/156 Linfeng_20130201_rIgG_4.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.31 0.00 0 0 50 3 1075.09827 3223.28025 -0.47 28.26 2454 2454 MS2 33/156 Linfeng_20130201_rIgG_6.raw High NHKEEMSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 411 4.31 0.00 2 0 50 3 1118.22253 3352.65305 2.72 39.44 2799 2799 MS2 29/120 Linfeng_20130204_CTCF_6.raw High LEKEIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 381 4.30 0.00 1 4 33 3 960.79443 2880.36875 5.29 46.33 3539 3539 MS2 31/100 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.29 0.00 0 0 50 3 1075.09827 3223.28025 -0.47 26.66 2257 2257 MS2 34/156 Linfeng_20130201_rIgG_6.raw High HGVQELEIELQSQLSK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 441 4.29 0.00 0 6 31 3 613.32562 1837.96231 -1.73 51.66 4877 4877 MS2 30/60 Linfeng_20130201_rIgG_2.raw High HGVQELEIELQSQLSK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 387 4.28 0.00 0 54 50 2 919.48883 1837.97038 2.66 52.26 4969 4969 MS2 23/30 Linfeng_20130201_rIgG_4.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 21 4.28 0.00 0 0 50 3 1075.10022 3223.28611 1.35 23.11 1698 1698 MS2 33/156 Linfeng_20130201_rIgG_5.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.28 0.00 0 0 50 3 1075.10095 3223.28830 2.03 26.73 2308 2308 MS2 34/156 Linfeng_20130201_rIgG_7.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 571 4.27 0.00 1 11 9 3 793.06781 2377.18888 0.26 49.23 4664 4664 MS2 34/80 Linfeng_20130201_rIgG_5.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.26 0.00 0 0 50 3 1075.09973 3223.28464 0.90 51.28 4880 4880 MS2 45/156 Linfeng_20130201_rIgG_9.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 32 4.25 0.00 0 0 50 2 896.36920 1791.73113 1.86 22.33 1090 1090 MS2 20/44 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.25 0.00 0 0 50 3 1075.09900 3223.28244 0.21 27.13 1755 1755 MS2 31/156 Linfeng_20130204_CTCF_9.raw High HGVQELEIELQSQLSKK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 383 4.25 0.00 1 5 10 3 656.02448 1966.05887 -0.81 49.47 4185 4185 MS2 25/64 Linfeng_20130204_CTCF_8.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 78 4.24 0.00 0 7 9 3 902.38660 2705.14524 -5.92 49.34 4648 4648 MS2 27/124 Linfeng_20130201_rIgG_9.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.23 0.00 0 57 50 3 1075.09875 3223.28171 -0.01 25.31 2128 2128 MS2 31/156 Linfeng_20130201_rIgG_7.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.23 0.00 0 0 50 3 1075.09973 3223.28464 0.90 25.48 2070 2070 MS2 32/156 Linfeng_20130201_rIgG_4.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.23 0.00 0 1 46 3 1075.09937 3223.28354 0.56 25.91 1691 1691 MS2 35/156 Linfeng_20130204_CTCF_2.raw High GSRGGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 63 4.23 0.00 1 0 50 3 697.96771 2091.88858 2.95 16.77 942 942 MS2 31/100 Linfeng_20130201_rIgG_9.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 27 4.23 0.00 0 5 50 2 896.36884 1791.73039 1.45 18.97 1250 1250 MS2 23/44 Linfeng_20130201_rIgG_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.23 0.00 0 6 50 3 1075.10132 3223.28940 2.37 26.64 2207 2207 MS2 32/156 Linfeng_20130201_rIgG_2.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.22 0.00 0 0 45 3 1075.10193 3223.29123 2.94 50.54 3981 3981 MS2 36/156 Linfeng_20130204_CTCF_6.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 345 4.22 0.00 0 12 50 2 616.80255 1232.59783 -0.05 22.00 1664 1664 MS2 23/30 Linfeng_20130201_rIgG_9.raw High VQALEEANNDLENK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 408 4.21 0.00 0 10 50 2 793.88910 1586.77092 3.27 33.09 2147 2147 MS2 23/26 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.20 0.00 0 20 50 3 1075.10083 3223.28794 1.92 27.92 2463 2463 MS2 34/156 Linfeng_20130201_rIgG_7.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.20 0.00 0 0 50 3 1075.09949 3223.28391 0.67 34.77 3091 3091 MS2 33/156 Linfeng_20130201_rIgG_9.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 206 4.20 0.00 0 3 3 3 837.38269 2510.13352 0.66 45.38 4182 4182 MS2 35/88 Linfeng_20130201_rIgG_9.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 199 4.20 0.00 0 8 45 3 837.38147 2510.12986 -0.80 44.91 4110 4110 MS2 33/88 Linfeng_20130201_rIgG_2.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 30 4.20 0.00 0 0 50 2 896.36774 1791.72820 0.22 18.79 1215 1215 MS2 20/44 Linfeng_20130201_rIgG_2.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 197 4.19 0.00 0 32 50 3 837.38525 2510.14121 3.72 45.12 4145 4145 MS2 31/88 Linfeng_20130201_rIgG_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 4.19 0.00 0 0 50 3 1075.09692 3223.27622 -1.72 27.94 2367 2367 MS2 31/156 Linfeng_20130201_rIgG_4.raw High HGVQELEIELQSQLSK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 440 4.18 0.00 0 21 50 3 613.32593 1837.96323 -1.23 52.05 4958 4958 MS2 27/60 Linfeng_20130201_rIgG_9.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 360 4.18 0.00 0 9 50 2 616.80249 1232.59770 -0.15 23.20 1830 1830 MS2 22/30 Linfeng_20130201_rIgG_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.17 0.00 0 0 50 3 1075.09888 3223.28208 0.10 24.10 1417 1417 MS2 30/156 Linfeng_20130204_CTCF_7.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 210 4.16 0.00 0 6 50 3 837.38342 2510.13572 1.53 45.26 3708 3708 MS2 28/88 Linfeng_20130204_CTCF_2.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 60 4.15 0.00 0 8 14 3 902.38477 2705.13974 -7.95 49.80 4101 4101 MS2 33/124 Linfeng_20130204_CTCF_10.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 346 4.15 0.00 0 18 50 2 616.80237 1232.59746 -0.35 22.98 1684 1684 MS2 22/30 Linfeng_20130201_rIgG_5.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 285 4.15 0.00 0 15 50 2 616.80188 1232.59648 -1.14 23.01 1791 1791 MS2 21/30 Linfeng_20130201_rIgG_10.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 98 4.15 0.00 0 3 28 3 902.38959 2705.15421 -2.60 52.28 4138 4138 MS2 32/124 Linfeng_20130204_CTCF_3.raw High DQIVDLTVGNNK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 534 4.15 0.00 0 32 34 2 658.34637 1315.68547 0.15 38.23 3443 3443 MS2 20/22 Linfeng_20130201_rIgG_1.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 301 4.15 0.00 0 7 50 2 616.80206 1232.59685 -0.85 22.04 1654 1654 MS2 22/30 Linfeng_20130201_rIgG_8.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.14 0.00 0 0 50 3 1075.10168 3223.29050 2.71 26.71 1511 1511 MS2 31/156 Linfeng_20130204_CTCF_3.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 29 4.14 0.00 0 0 50 2 896.36896 1791.73064 1.58 21.31 981 981 MS2 22/44 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.14 0.00 0 16 50 3 1075.09839 3223.28061 -0.35 23.44 1812 1812 MS2 32/156 Linfeng_20130201_rIgG_4.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 110 4.13 0.00 0 0 44 2 1353.08459 2705.16191 0.24 58.44 5142 5142 MS2 27/62 Linfeng_20130204_CTCF_7.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 35 4.13 0.00 0 3 50 2 896.36963 1791.73198 2.33 18.98 771 771 MS2 19/44 Linfeng_20130204_CTCF_7.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.13 0.00 0 2 29 3 1075.09949 3223.28391 0.67 32.74 2112 2112 MS2 39/156 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.13 0.00 0 1 50 3 1075.09924 3223.28318 0.44 25.10 1534 1534 MS2 35/156 Linfeng_20130204_CTCF_7.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 206 4.12 0.00 0 2 19 3 837.38452 2510.13901 2.84 45.47 3659 3659 MS2 27/88 Linfeng_20130204_CTCF_9.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 535 4.12 0.00 1 7 42 3 793.07159 2377.20023 5.03 49.51 4180 4180 MS2 28/80 Linfeng_20130204_CTCF_2.raw High VQALEEANNDLENK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 388 4.12 0.00 0 3 50 2 793.88739 1586.76750 1.12 32.97 2359 2359 MS2 23/26 Linfeng_20130204_CTCF_7.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 124 4.11 0.00 0 0 50 3 902.39178 2705.16080 -0.17 53.95 4326 4326 MS2 30/124 Linfeng_20130204_CTCF_6.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 34 4.11 0.00 0 13 50 2 896.36865 1791.73003 1.24 18.23 1154 1154 MS2 20/44 Linfeng_20130201_rIgG_6.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 329 4.10 0.00 0 20 50 2 616.80225 1232.59722 -0.55 21.94 1617 1617 MS2 18/30 Linfeng_20130201_rIgG_4.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 210 4.10 0.00 0 11 29 3 837.38318 2510.13498 1.24 45.73 3656 3656 MS2 28/88 Linfeng_20130204_CTCF_10.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 4.09 0.00 0 0 50 3 1075.09631 3223.27439 -2.28 31.14 2280 2280 MS2 34/156 Linfeng_20130204_CTCF_2.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.09 0.00 0 0 50 3 1075.09985 3223.28501 1.01 31.98 2815 2815 MS2 31/156 Linfeng_20130201_rIgG_9.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 4.09 0.00 0 2 50 3 1075.10425 3223.29819 5.10 52.00 4127 4127 MS2 31/156 Linfeng_20130204_CTCF_6.raw High VQALEEANNDLENK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 392 4.09 0.00 0 0 50 2 793.88684 1586.76641 0.42 32.62 2464 2464 MS2 21/26 Linfeng_20130204_CTCF_1.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 33 4.08 0.00 0 0 50 2 896.36987 1791.73247 2.61 17.78 1081 1081 MS2 18/44 Linfeng_20130201_rIgG_2.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 4.08 0.00 0 0 50 3 1075.09570 3223.27256 -2.85 31.60 2779 2779 MS2 33/156 Linfeng_20130201_rIgG_9.raw High HGVQELEIELQSQLSK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 440 4.08 0.00 0 8 14 3 613.32721 1837.96708 0.86 51.84 4990 4990 MS2 29/60 Linfeng_20130201_rIgG_5.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.08 0.00 0 0 50 3 1075.09863 3223.28135 -0.13 27.13 2261 2261 MS2 38/156 Linfeng_20130201_rIgG_8.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 4.08 0.00 0 0 50 3 1075.09766 3223.27842 -1.03 25.03 2023 2023 MS2 34/156 Linfeng_20130201_rIgG_2.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 347 4.08 0.00 0 9 50 2 616.80292 1232.59856 0.54 23.42 1844 1844 MS2 22/30 Linfeng_20130201_rIgG_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.07 0.00 0 25 50 3 1075.10022 3223.28611 1.35 59.74 5030 5030 MS2 34/156 Linfeng_20130204_CTCF_6.raw High NHKEEMSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 412 4.07 0.00 2 0 50 4 838.91882 3352.65346 2.84 39.24 2982 2982 MS2 46/180 Linfeng_20130204_CTCF_7.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 568 4.06 0.00 1 0 3 3 793.06854 2377.19107 1.18 49.30 4738 4738 MS2 33/80 Linfeng_20130201_rIgG_8.raw High VQALEEANNDLENK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 389 4.06 0.00 0 80 50 2 793.88739 1586.76750 1.12 33.89 3037 3037 MS2 22/26 Linfeng_20130201_rIgG_6.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 26 4.06 0.00 0 0 50 2 896.36737 1791.72746 -0.19 29.02 1747 1747 MS2 21/44 Linfeng_20130204_CTCF_6.raw High GSRGGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 53 4.06 0.00 1 19 50 3 697.96552 2091.88199 -0.21 16.64 931 931 MS2 30/100 Linfeng_20130201_rIgG_2.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.06 0.00 0 0 50 3 1075.09985 3223.28501 1.01 26.86 1798 1798 MS2 31/156 Linfeng_20130204_CTCF_2.raw High HGVQELEIELQSQLSK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 433 4.05 0.00 0 15 50 3 613.32928 1837.97330 4.25 51.99 5064 5064 MS2 27/60 Linfeng_20130201_rIgG_8.raw High VQALEEANNDLENK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 394 4.04 0.00 0 12 50 2 793.88684 1586.76641 0.42 33.93 2978 2978 MS2 22/26 Linfeng_20130201_rIgG_4.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.04 0.00 0 0 50 3 1075.09851 3223.28098 -0.24 28.83 2479 2479 MS2 26/156 Linfeng_20130201_rIgG_2.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 27 4.03 0.00 0 4 50 2 896.36798 1791.72869 0.49 24.74 1334 1334 MS2 19/44 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 16 4.03 0.00 0 0 50 3 1075.09558 3223.27219 -2.97 24.87 1882 1882 MS2 41/156 Linfeng_20130201_rIgG_5.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 563 4.03 0.00 1 2 29 3 793.07086 2377.19803 4.11 49.55 3857 3857 MS2 25/80 Linfeng_20130204_CTCF_3.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 536 4.02 0.00 1 3 50 3 793.07147 2377.19986 4.88 49.66 3869 3869 MS2 27/80 Linfeng_20130204_CTCF_4.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 4.01 0.00 0 0 50 3 1075.09863 3223.28135 -0.13 26.50 1679 1679 MS2 34/156 Linfeng_20130204_CTCF_8.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 201 3.99 0.00 0 0 49 3 837.38544 2510.14176 3.94 45.50 3638 3638 MS2 25/88 Linfeng_20130204_CTCF_7.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 19 3.99 0.00 0 0 50 3 1075.10437 3223.29856 5.21 27.04 2301 2301 MS2 34/156 Linfeng_20130201_rIgG_6.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 27 3.98 0.00 0 25 50 2 896.36749 1791.72771 -0.05 23.67 1231 1231 MS2 21/44 Linfeng_20130204_CTCF_6.raw High HGVQELEIELQSQLSKK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 343 3.98 0.00 1 15 50 3 656.02911 1966.07279 6.27 52.01 4442 4442 MS2 23/64 Linfeng_20130204_CTCF_2.raw High GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 8 3.98 0.00 0 0 50 4 1243.99622 4972.96303 5.31 38.54 2701 2701 MS2 46/390 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.97 0.00 0 0 50 3 1075.10217 3223.29197 3.17 26.94 2333 2333 MS2 32/156 Linfeng_20130201_rIgG_7.raw High VQALEEANNDLENK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 350 3.97 0.00 0 8 50 2 793.88611 1586.76494 -0.50 32.83 2899 2899 MS2 23/26 Linfeng_20130201_rIgG_9.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.97 0.00 0 0 50 4 806.57581 3223.28139 -0.11 25.83 2134 2134 MS2 41/234 Linfeng_20130201_rIgG_10.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.97 0.00 0 0 50 3 1075.09839 3223.28061 -0.35 28.94 2462 2462 MS2 32/156 Linfeng_20130201_rIgG_8.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 31 3.96 0.00 0 0 50 2 896.36896 1791.73064 1.58 25.78 1436 1436 MS2 18/44 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 3.96 0.00 0 0 50 3 1075.09741 3223.27768 -1.26 22.78 1770 1770 MS2 32/156 Linfeng_20130201_rIgG_3.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 58 3.96 0.00 0 0 7 3 902.38416 2705.13791 -8.63 49.58 4135 4135 MS2 29/124 Linfeng_20130204_CTCF_9.raw High VQALEEANNDLENK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 384 3.95 0.00 0 0 50 2 793.88666 1586.76604 0.19 32.41 2860 2860 MS2 23/26 Linfeng_20130201_rIgG_1.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 199 3.94 0.00 0 0 8 3 837.38239 2510.13260 0.29 45.03 3727 3727 MS2 30/88 Linfeng_20130204_CTCF_1.raw High HGVQELEIELQSQLSK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 429 3.94 0.00 0 40 50 3 613.32715 1837.96689 0.76 52.04 5022 5022 MS2 30/60 Linfeng_20130201_rIgG_7.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.93 0.00 0 0 31 3 1075.10095 3223.28830 2.03 32.94 2133 2133 MS2 34/156 Linfeng_20130204_CTCF_6.raw High VQALEEANNDLENK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 353 3.93 0.00 0 15 50 2 793.88611 1586.76494 -0.50 32.76 2863 2863 MS2 23/26 Linfeng_20130201_rIgG_4.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.93 0.00 0 0 50 3 1075.09949 3223.28391 0.67 26.58 1691 1691 MS2 26/156 Linfeng_20130204_CTCF_9.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.93 0.00 0 8 50 3 1075.10205 3223.29160 3.06 26.86 2279 2279 MS2 34/156 Linfeng_20130201_rIgG_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.92 0.00 0 0 50 3 1075.09912 3223.28281 0.33 26.71 1626 1626 MS2 31/156 Linfeng_20130204_CTCF_10.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.92 0.00 0 2 50 3 1075.10010 3223.28574 1.24 26.91 1735 1735 MS2 30/156 Linfeng_20130204_CTCF_7.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 339 3.91 0.00 0 11 50 2 616.80286 1232.59844 0.44 23.33 1327 1327 MS2 19/30 Linfeng_20130204_CTCF_7.raw High GSRGGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 61 3.91 0.00 1 0 50 2 1046.44678 2091.88628 1.84 16.88 962 962 MS2 21/50 Linfeng_20130201_rIgG_3.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 161 3.91 0.00 0 41 50 3 902.39728 2705.17728 5.93 58.68 5169 5169 MS2 27/124 Linfeng_20130204_CTCF_7.raw High NHKEEMSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 400 3.90 0.00 2 1 12 4 838.91705 3352.64638 0.73 38.41 2897 2897 MS2 35/180 Linfeng_20130204_CTCF_7.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 118 3.89 0.00 0 3 10 3 902.39154 2705.16007 -0.44 58.43 4898 4898 MS2 29/124 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.89 0.00 0 0 50 3 1075.09998 3223.28537 1.12 23.66 1754 1754 MS2 32/156 Linfeng_20130201_rIgG_5.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 26 3.89 0.00 0 21 50 2 896.36621 1791.72515 -1.48 32.13 2050 2050 MS2 23/44 Linfeng_20130204_CTCF_6.raw High VQALEEANNDLENK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 353 3.88 0.00 0 0 50 2 793.88593 1586.76457 -0.73 32.74 2877 2877 MS2 23/26 Linfeng_20130201_rIgG_3.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 96 3.88 0.00 0 45 17 3 902.38965 2705.15439 -2.54 49.31 4164 4164 MS2 28/124 Linfeng_20130204_CTCF_8.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.88 0.00 0 0 50 3 1075.09839 3223.28061 -0.35 28.06 2393 2393 MS2 31/156 Linfeng_20130201_rIgG_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 3.88 0.00 0 6 50 3 1075.09656 3223.27512 -2.06 24.33 1951 1951 MS2 28/156 Linfeng_20130201_rIgG_10.raw High NHKEEMSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 399 3.87 0.00 2 4 50 4 838.91632 3352.64345 -0.14 42.49 3127 3127 MS2 35/180 Linfeng_20130204_CTCF_6.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 28 3.87 0.00 0 10 50 3 597.91382 1791.72690 -0.50 18.25 1144 1144 MS2 24/88 Linfeng_20130201_rIgG_2.raw High GSRGGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 64 3.86 0.00 1 0 50 3 697.96783 2091.88895 3.12 19.24 1286 1286 MS2 33/100 Linfeng_20130201_rIgG_3.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 193 3.86 0.00 0 12 22 3 837.37939 2510.12363 -3.28 45.92 4283 4283 MS2 33/88 Linfeng_20130201_rIgG_1.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 202 3.86 0.00 0 1 14 3 837.38263 2510.13333 0.58 45.14 4147 4147 MS2 33/88 Linfeng_20130201_rIgG_3.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 549 3.86 0.00 1 9 21 3 793.07288 2377.20407 6.65 49.45 3864 3864 MS2 24/80 Linfeng_20130204_CTCF_6.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 382 3.85 0.00 0 3 50 2 616.80341 1232.59953 1.33 22.96 1791 1791 MS2 18/30 Linfeng_20130201_rIgG_3.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 293 3.85 0.00 0 18 50 2 616.80206 1232.59685 -0.85 22.77 1740 1740 MS2 21/30 Linfeng_20130201_rIgG_2.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 36 3.85 0.00 0 0 50 2 896.37006 1791.73284 2.81 61.31 5194 5194 MS2 22/44 Linfeng_20130204_CTCF_6.raw High NHKEEmSQLTGQNSGDVNVEINVAPGK Unambiguous 1 1 P35527 M6(Oxidation) CID 1.0000 0.0000 1 1 470 3.85 0.00 1 3 50 3 971.13898 2911.40238 5.91 33.70 2430 2430 MS2 28/104 Linfeng_20130204_CTCF_7.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 25 3.85 0.00 0 0 50 2 896.36743 1791.72759 -0.12 19.01 1250 1250 MS2 21/44 Linfeng_20130201_rIgG_10.raw High NHKEEMSQLTGQNSGDVNVEINVAPGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 526 3.85 0.00 1 67 50 3 965.80420 2895.39804 2.69 38.13 2657 2657 MS2 28/104 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 3.83 0.00 0 0 50 3 1075.09692 3223.27622 -1.72 29.67 2613 2613 MS2 28/156 Linfeng_20130201_rIgG_6.raw High NHKEEMSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 405 3.83 0.00 2 0 38 4 838.91479 3352.63735 -1.96 41.10 2981 2981 MS2 38/180 Linfeng_20130204_CTCF_6.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 349 3.83 0.00 0 14 50 2 616.80267 1232.59807 0.15 21.82 1624 1624 MS2 25/30 Linfeng_20130201_rIgG_1.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.83 0.00 0 10 50 3 1075.10205 3223.29160 3.06 25.44 1366 1366 MS2 29/156 Linfeng_20130204_CTCF_4.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 340 3.83 0.00 0 0 50 2 616.80231 1232.59734 -0.45 22.03 1573 1573 MS2 19/30 Linfeng_20130201_rIgG_5.raw High VQALEEANNDLENK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 391 3.82 0.00 0 11 50 2 793.88550 1586.76372 -1.27 32.98 2379 2379 MS2 20/26 Linfeng_20130204_CTCF_9.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 210 3.82 0.00 0 4 12 3 837.38318 2510.13498 1.24 45.33 4209 4209 MS2 32/88 Linfeng_20130201_rIgG_6.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 25 3.82 0.00 0 0 50 2 896.36725 1791.72722 -0.32 18.00 1111 1111 MS2 21/44 Linfeng_20130201_rIgG_10.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.81 0.00 0 0 50 3 1075.09985 3223.28501 1.01 59.65 5332 5332 MS2 25/156 Linfeng_20130204_CTCF_2.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.81 0.00 0 0 50 3 1075.10022 3223.28611 1.35 26.76 1710 1710 MS2 28/156 Linfeng_20130204_CTCF_8.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.81 0.00 0 0 50 3 1075.09961 3223.28427 0.78 26.87 2085 2085 MS2 33/156 Linfeng_20130201_rIgG_5.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.80 0.00 0 6 50 3 1075.09912 3223.28281 0.33 27.60 2334 2334 MS2 29/156 Linfeng_20130201_rIgG_3.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 567 3.80 0.00 1 11 4 3 617.97992 1851.92521 -0.97 49.56 4773 4773 MS2 27/56 Linfeng_20130201_rIgG_8.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 83 3.80 0.00 0 25 50 3 902.38782 2705.14890 -4.57 58.41 5741 5741 MS2 29/124 Linfeng_20130201_rIgG_9.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 106 3.80 0.00 0 3 7 3 902.39087 2705.15805 -1.18 49.51 4099 4099 MS2 30/124 Linfeng_20130204_CTCF_7.raw High KDIENQYETQITQIEHEVSSSGQEVQSSAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 386 3.80 0.00 1 0 9 4 848.90729 3392.60732 -0.48 52.30 4157 4157 MS2 38/174 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.80 0.00 0 0 50 3 1075.10059 3223.28720 1.69 26.96 1808 1808 MS2 27/156 Linfeng_20130204_CTCF_2.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 31 3.79 0.00 0 0 50 2 896.36938 1791.73149 2.06 18.13 1143 1143 MS2 20/44 Linfeng_20130201_rIgG_7.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 329 3.79 0.00 0 10 50 2 616.80225 1232.59722 -0.55 22.01 1660 1660 MS2 20/30 Linfeng_20130201_rIgG_10.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 346 3.78 0.00 0 12 50 2 616.80219 1232.59709 -0.65 23.29 1716 1716 MS2 23/30 Linfeng_20130201_rIgG_5.raw High NHKEEMSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 404 3.77 0.00 2 0 44 4 838.91718 3352.64687 0.88 38.31 2884 2884 MS2 41/180 Linfeng_20130204_CTCF_8.raw High HGVQELEIELQSQLSK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 435 3.77 0.00 0 6 50 3 613.33087 1837.97806 6.84 52.33 4430 4430 MS2 26/60 Linfeng_20130204_CTCF_9.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 3.77 0.00 0 0 50 3 1075.09631 3223.27439 -2.28 27.39 2393 2393 MS2 30/156 Linfeng_20130201_rIgG_7.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 207 3.77 0.00 0 0 33 3 837.38269 2510.13352 0.66 45.49 3427 3427 MS2 28/88 Linfeng_20130204_CTCF_4.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 21 3.77 0.00 0 32 50 3 1075.09863 3223.28135 -0.13 25.23 2077 2077 MS2 29/156 Linfeng_20130201_rIgG_9.raw High HGVQELEIELQSQLSK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 431 3.77 0.00 0 18 36 3 613.32660 1837.96524 -0.13 51.85 4929 4929 MS2 29/60 Linfeng_20130201_rIgG_4.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 577 3.76 0.00 1 19 10 3 617.98059 1851.92722 0.12 49.60 4754 4754 MS2 27/56 Linfeng_20130201_rIgG_7.raw High NHKEEmSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 P35527 M6(Oxidation) CID 1.0000 0.0000 1 1 395 3.76 0.00 2 3 45 4 842.91577 3368.64126 0.72 37.65 2608 2608 MS2 35/180 Linfeng_20130204_CTCF_6.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 28 3.76 0.00 0 4 50 2 896.36780 1791.72832 0.29 27.91 1641 1641 MS2 18/44 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 21 3.76 0.00 0 0 50 3 1075.10205 3223.29160 3.06 29.23 2504 2504 MS2 30/156 Linfeng_20130201_rIgG_4.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 347 3.76 0.00 0 26 50 2 616.80243 1232.59758 -0.25 23.01 1800 1800 MS2 23/30 Linfeng_20130201_rIgG_9.raw High GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 8 3.75 0.00 0 0 47 4 1243.99182 4972.94546 1.77 39.41 2796 2796 MS2 48/390 Linfeng_20130204_CTCF_6.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 350 3.75 0.00 0 17 50 2 616.80261 1232.59795 0.05 22.83 1762 1762 MS2 23/30 Linfeng_20130201_rIgG_1.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 25 3.75 0.00 0 11 50 2 896.36627 1791.72527 -1.41 19.12 1226 1226 MS2 20/44 Linfeng_20130201_rIgG_5.raw High HGVQELEIELQSQLSK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 435 3.73 0.00 0 24 50 3 613.32971 1837.97458 4.95 51.92 4937 4937 MS2 27/60 Linfeng_20130201_rIgG_10.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 199 3.73 0.00 0 1 11 3 837.38519 2510.14103 3.65 45.41 3440 3440 MS2 26/88 Linfeng_20130204_CTCF_6.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 36 3.73 0.00 0 57 50 2 896.37079 1791.73430 3.63 19.24 1293 1293 MS2 18/44 Linfeng_20130201_rIgG_6.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 26 3.73 0.00 0 11 50 2 896.36725 1791.72722 -0.32 18.98 1251 1251 MS2 23/44 Linfeng_20130201_rIgG_9.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 68 3.73 0.00 0 12 10 2 1353.07434 2705.14141 -7.34 49.44 4756 4756 MS2 23/62 Linfeng_20130201_rIgG_8.raw High GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 7 3.72 0.00 0 36 50 4 1243.98682 4972.92544 -2.26 19.75 1302 1302 MS2 47/390 Linfeng_20130201_rIgG_5.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 30 3.72 0.00 0 6 50 2 896.36810 1791.72893 0.63 23.43 1208 1208 MS2 21/44 Linfeng_20130204_CTCF_6.raw High NHKEEmSQLTGQNSGDVNVEINVAPGK Unambiguous 1 1 P35527 M6(Oxidation) CID 1.0000 0.0000 1 1 418 3.72 0.00 1 63 50 4 728.60107 2911.38247 -0.93 33.26 2932 2932 MS2 35/156 Linfeng_20130201_rIgG_10.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 531 3.72 0.00 1 13 18 2 926.46643 1851.92558 -0.76 49.73 3895 3895 MS2 19/28 Linfeng_20130204_CTCF_6.raw High HGVQELEIELQSQLSKK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 358 3.71 0.00 1 22 50 3 656.02771 1966.06858 4.13 51.08 4350 4350 MS2 22/64 Linfeng_20130204_CTCF_2.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 201 3.71 0.00 0 3 26 3 837.38245 2510.13279 0.36 44.05 4019 4019 MS2 33/88 Linfeng_20130201_rIgG_2.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.70 0.00 0 77 50 3 1075.09961 3223.28427 0.78 25.36 2062 2062 MS2 26/156 Linfeng_20130201_rIgG_8.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 333 3.70 0.00 0 14 50 2 616.80212 1232.59697 -0.75 21.97 1207 1207 MS2 19/30 Linfeng_20130204_CTCF_1.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.69 0.00 0 38 50 3 1075.10181 3223.29087 2.83 25.53 1647 1647 MS2 29/156 Linfeng_20130204_CTCF_2.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 343 3.69 0.00 0 22 50 2 616.80231 1232.59734 -0.45 22.59 1639 1639 MS2 18/30 Linfeng_20130201_rIgG_5.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 573 3.69 0.00 1 3 17 3 617.98212 1851.93180 2.59 49.85 3890 3890 MS2 25/56 Linfeng_20130204_CTCF_4.raw High NYSPYYNTIDDLK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 276 3.69 0.00 0 9 50 2 803.37622 1605.74516 1.25 45.14 3738 3738 MS2 18/24 Linfeng_20130204_CTCF_1.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 323 3.69 0.00 0 9 50 2 616.80219 1232.59709 -0.65 22.13 1705 1705 MS2 21/30 Linfeng_20130201_rIgG_7.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 31 3.68 0.00 0 11 50 2 896.36835 1791.72942 0.90 31.30 1970 1970 MS2 19/44 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 3.68 0.00 0 0 50 4 806.57446 3223.27602 -1.78 26.00 2151 2151 MS2 45/234 Linfeng_20130201_rIgG_3.raw High HGVQELEIELQSQLSK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 460 3.68 0.00 0 3 50 3 613.32483 1837.95993 -3.02 52.23 4135 4135 MS2 25/60 Linfeng_20130204_CTCF_4.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.67 0.00 0 0 50 3 1075.09863 3223.28135 -0.13 32.68 2875 2875 MS2 32/156 Linfeng_20130201_rIgG_10.raw High LEKEIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 340 3.67 0.00 1 6 29 3 960.78870 2880.35154 -0.69 46.00 4251 4251 MS2 36/100 Linfeng_20130201_rIgG_10.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 349 3.67 0.00 0 7 50 2 616.80249 1232.59770 -0.15 21.95 1658 1658 MS2 21/30 Linfeng_20130201_rIgG_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 3.66 0.00 0 0 50 3 1075.09753 3223.27805 -1.15 27.77 2336 2336 MS2 30/156 Linfeng_20130201_rIgG_8.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.66 0.00 0 0 50 3 1075.09961 3223.28427 0.78 26.88 1725 1725 MS2 26/156 Linfeng_20130204_CTCF_9.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 108 3.66 0.00 0 77 50 3 902.39093 2705.15824 -1.11 59.76 5031 5031 MS2 26/124 Linfeng_20130204_CTCF_6.raw High NHKEEmSQLTGQNSGDVNVEINVAPGK Unambiguous 1 1 P35527 M6(Oxidation) CID 1.0000 0.0000 1 1 432 3.66 0.00 1 13 50 4 728.60162 2911.38466 -0.18 33.36 2938 2938 MS2 40/156 Linfeng_20130201_rIgG_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.66 0.00 0 0 50 3 1075.09912 3223.28281 0.33 25.96 1636 1636 MS2 33/156 Linfeng_20130204_CTCF_7.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.65 0.00 0 0 50 3 1075.10168 3223.29050 2.71 31.66 2774 2774 MS2 29/156 Linfeng_20130201_rIgG_10.raw High NHKEEmSQLTGQNSGDVNVEINVAPGK Unambiguous 1 1 P35527 M6(Oxidation) CID 1.0000 0.0000 1 1 369 3.65 0.00 1 77 50 3 971.12671 2911.36557 -6.73 60.01 5902 5902 MS2 29/104 Linfeng_20130201_rIgG_4.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 26 3.65 0.00 0 0 50 2 896.36859 1791.72991 1.17 18.88 1230 1230 MS2 20/44 Linfeng_20130201_rIgG_1.raw High NHKEEmSQLTGQNSGDVNVEINVAPGK Unambiguous 1 1 P35527 M6(Oxidation) CID 1.0000 0.0000 1 1 448 3.65 0.00 1 26 50 4 728.60242 2911.38784 0.91 33.27 2912 2912 MS2 38/156 Linfeng_20130201_rIgG_4.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 345 3.64 0.00 0 0 50 2 616.80280 1232.59831 0.34 22.98 1341 1341 MS2 17/30 Linfeng_20130204_CTCF_1.raw High GSRGGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 65 3.64 0.00 1 0 50 3 697.96625 2091.88419 0.85 19.80 1362 1362 MS2 32/100 Linfeng_20130201_rIgG_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 21 3.64 0.00 0 75 50 3 1075.09949 3223.28391 0.67 23.22 1709 1709 MS2 28/156 Linfeng_20130201_rIgG_5.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 361 3.64 0.00 0 9 50 2 616.80255 1232.59783 -0.05 22.41 1188 1188 MS2 19/30 Linfeng_20130204_CTCF_9.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 29 3.64 0.00 0 0 50 2 896.36841 1791.72954 0.97 26.82 1536 1536 MS2 18/44 Linfeng_20130204_CTCF_6.raw High NHKEEMSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 412 3.63 0.00 2 0 34 4 838.91840 3352.65175 2.33 58.65 4923 4923 MS2 41/180 Linfeng_20130204_CTCF_6.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 305 3.63 0.00 0 10 50 2 616.80194 1232.59661 -1.04 23.36 1842 1842 MS2 20/30 Linfeng_20130201_rIgG_9.raw High HGVQELEIELQSQLSK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 452 3.62 0.00 0 13 50 3 613.32550 1837.96195 -1.93 59.67 5900 5900 MS2 24/60 Linfeng_20130201_rIgG_1.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 28 3.62 0.00 0 0 50 3 597.91357 1791.72617 -0.91 18.57 1171 1171 MS2 32/88 Linfeng_20130201_rIgG_4.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.62 0.00 0 0 50 3 1075.09900 3223.28244 0.21 25.67 1511 1511 MS2 30/156 Linfeng_20130204_CTCF_10.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.62 0.00 0 0 50 3 1075.09900 3223.28244 0.21 26.93 1729 1729 MS2 29/156 Linfeng_20130204_CTCF_8.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 205 3.62 0.00 0 2 15 3 837.38257 2510.13315 0.51 45.79 4214 4214 MS2 33/88 Linfeng_20130201_rIgG_4.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.62 0.00 0 0 50 3 1075.09985 3223.28501 1.01 26.80 1716 1716 MS2 33/156 Linfeng_20130204_CTCF_9.raw High VQALEEANNDLENK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 366 3.61 0.00 0 0 50 2 793.88495 1586.76262 -1.96 32.54 2854 2854 MS2 20/26 Linfeng_20130201_rIgG_2.raw High TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 475 3.61 0.00 1 5 40 3 623.31158 1867.92020 -0.92 39.56 3566 3566 MS2 24/56 Linfeng_20130201_rIgG_10.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 555 3.61 0.00 1 0 22 3 793.06842 2377.19071 1.03 50.45 3972 3972 MS2 23/80 Linfeng_20130204_CTCF_6.raw High VQALEEANNDLENKIQDWYDKK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 472 3.61 0.00 2 2 50 4 666.57861 2663.29262 -0.84 51.53 4899 4899 MS2 39/126 Linfeng_20130201_rIgG_10.raw High HGVQELEIELQSQLSK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 433 3.61 0.00 0 10 22 3 613.32642 1837.96469 -0.43 50.58 4789 4789 MS2 30/60 Linfeng_20130201_rIgG_4.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.60 0.00 0 0 50 3 1075.10095 3223.28830 2.03 29.16 2484 2484 MS2 32/156 Linfeng_20130201_rIgG_8.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 37 3.60 0.00 0 17 50 2 896.37073 1791.73418 3.56 18.24 642 642 MS2 19/44 Linfeng_20130204_CTCF_6.raw High HGVQELEIELQSQLSK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 438 3.59 0.00 0 2 50 3 613.32770 1837.96854 1.66 52.20 4147 4147 MS2 25/60 Linfeng_20130204_CTCF_6.raw High GSRGGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 67 3.59 0.00 1 71 50 3 697.96667 2091.88547 1.46 17.33 996 996 MS2 32/100 Linfeng_20130201_rIgG_5.raw High NHKEEmSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 P35527 M6(Oxidation) CID 1.0000 0.0000 1 1 402 3.58 0.00 2 0 50 4 842.91058 3368.62050 -5.45 37.24 2805 2805 MS2 29/180 Linfeng_20130204_CTCF_9.raw High NHKEEMSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 417 3.58 0.00 2 7 50 4 838.92065 3352.66079 5.03 41.46 3018 3018 MS2 31/180 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.58 0.00 0 6 50 3 1075.10339 3223.29563 4.30 25.56 1675 1675 MS2 30/156 Linfeng_20130204_CTCF_1.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 564 3.57 0.00 1 18 26 3 617.97974 1851.92466 -1.27 49.78 3883 3883 MS2 25/56 Linfeng_20130204_CTCF_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.57 0.00 0 0 50 3 1075.10242 3223.29270 3.40 61.55 5219 5219 MS2 25/156 Linfeng_20130204_CTCF_6.raw High GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 8 3.55 0.00 0 91 50 4 1243.99280 4972.94936 2.56 20.52 1391 1391 MS2 43/390 Linfeng_20130201_rIgG_5.raw High VQALEEANNDLENK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 413 3.55 0.00 0 0 50 2 793.88910 1586.77092 3.27 32.99 2163 2163 MS2 19/26 Linfeng_20130204_CTCF_4.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.55 0.00 0 0 50 3 1075.10034 3223.28647 1.46 28.27 1892 1892 MS2 30/156 Linfeng_20130204_CTCF_9.raw High HGVQELEIELQSQLSK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 432 3.54 0.00 0 16 50 3 613.32666 1837.96543 -0.03 51.94 4980 4980 MS2 27/60 Linfeng_20130201_rIgG_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.54 0.00 0 0 50 3 1075.10010 3223.28574 1.24 27.12 1554 1554 MS2 32/156 Linfeng_20130204_CTCF_3.raw High VQALEEANNDLENK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 351 3.54 0.00 0 4 50 2 793.88605 1586.76482 -0.58 32.89 2451 2451 MS2 21/26 Linfeng_20130204_CTCF_2.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 34 3.53 0.00 0 0 50 2 896.36938 1791.73149 2.06 18.25 664 664 MS2 19/44 Linfeng_20130204_CTCF_9.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.53 0.00 0 0 50 3 1075.10144 3223.28977 2.49 61.01 5405 5405 MS2 28/156 Linfeng_20130204_CTCF_7.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 3.53 0.00 0 19 50 4 806.57385 3223.27358 -2.54 25.81 2131 2131 MS2 45/234 Linfeng_20130201_rIgG_3.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 302 3.53 0.00 0 13 50 2 616.80206 1232.59685 -0.85 21.74 1605 1605 MS2 17/30 Linfeng_20130201_rIgG_2.raw High GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 8 3.53 0.00 0 2 50 4 1243.99182 4972.94546 1.77 19.71 897 897 MS2 44/390 Linfeng_20130204_CTCF_2.raw High GSRGGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 58 3.52 0.00 1 19 50 3 697.96576 2091.88272 0.14 16.78 950 950 MS2 35/100 Linfeng_20130201_rIgG_1.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 322 3.51 0.00 0 12 50 2 616.80267 1232.59807 0.15 23.43 1315 1315 MS2 18/30 Linfeng_20130204_CTCF_9.raw High GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 9 3.50 0.00 0 67 50 4 1243.98328 4972.91128 -5.10 23.56 1859 1859 MS2 45/390 Linfeng_20130201_rIgG_3.raw High GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 8 3.50 0.00 0 0 49 4 1243.99133 4972.94350 1.38 29.12 1757 1757 MS2 48/390 Linfeng_20130204_CTCF_6.raw High TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 454 3.49 0.00 1 0 50 2 934.46710 1867.92693 2.68 40.31 3068 3068 MS2 20/28 Linfeng_20130204_CTCF_10.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 78 3.49 0.00 0 80 50 3 902.38617 2705.14396 -6.39 58.85 5186 5186 MS2 23/124 Linfeng_20130204_CTCF_7.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 554 3.49 0.00 1 27 8 3 617.97998 1851.92539 -0.87 49.39 4635 4635 MS2 27/56 Linfeng_20130201_rIgG_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 3.49 0.00 0 0 50 3 1075.09680 3223.27585 -1.83 29.42 2106 2106 MS2 27/156 Linfeng_20130204_CTCF_2.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 3.48 0.00 0 75 50 3 1075.09668 3223.27549 -1.94 25.56 2160 2160 MS2 29/156 Linfeng_20130201_rIgG_7.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 108 3.48 0.00 0 2 50 3 902.39099 2705.15842 -1.05 51.56 4084 4084 MS2 28/124 Linfeng_20130204_CTCF_6.raw High TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 478 3.47 0.00 1 4 17 3 623.31207 1867.92167 -0.13 39.67 3671 3671 MS2 21/56 Linfeng_20130201_rIgG_7.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 3.46 0.00 0 9 50 3 1075.09607 3223.27365 -2.51 23.47 1735 1735 MS2 36/156 Linfeng_20130201_rIgG_5.raw High NHKEEmSQLTGQNSGDVNVEINVAPGK Unambiguous 1 1 P35527 M6(Oxidation) CID 1.0000 0.0000 1 1 450 3.45 0.00 1 10 50 4 728.60254 2911.38833 1.08 32.98 2897 2897 MS2 34/156 Linfeng_20130201_rIgG_2.raw High TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 445 3.45 0.00 1 0 50 2 934.46588 1867.92449 1.38 40.02 3090 3090 MS2 20/28 Linfeng_20130204_CTCF_9.raw High GSRGGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 55 3.45 0.00 1 44 50 3 697.96564 2091.88236 -0.03 18.80 1225 1225 MS2 30/100 Linfeng_20130201_rIgG_3.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 209 3.45 0.00 0 0 50 3 837.38293 2510.13425 0.95 44.44 4066 4066 MS2 23/88 Linfeng_20130201_rIgG_4.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 293 3.45 0.00 0 8 50 2 616.80194 1232.59661 -1.04 22.82 1758 1758 MS2 20/30 Linfeng_20130201_rIgG_8.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 344 3.45 0.00 0 14 50 2 616.80231 1232.59734 -0.45 24.37 1299 1299 MS2 16/30 Linfeng_20130204_CTCF_6.raw High VQALEEANNDLENK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 383 3.45 0.00 0 0 50 2 793.88855 1586.76982 2.58 32.84 2152 2152 MS2 18/26 Linfeng_20130204_CTCF_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.44 0.00 0 0 50 3 1075.09851 3223.28098 -0.24 32.60 2423 2423 MS2 30/156 Linfeng_20130204_CTCF_2.raw High GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 8 3.44 0.00 0 0 50 4 1243.99146 4972.94399 1.48 19.57 1282 1282 MS2 49/390 Linfeng_20130201_rIgG_5.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 3.44 0.00 0 0 50 3 1075.09778 3223.27878 -0.92 29.71 2670 2670 MS2 27/156 Linfeng_20130201_rIgG_7.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.44 0.00 0 0 50 3 1075.09912 3223.28281 0.33 25.61 2166 2166 MS2 30/156 Linfeng_20130201_rIgG_7.raw High GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 8 3.44 0.00 0 0 50 4 1243.99487 4972.95766 4.23 20.19 809 809 MS2 47/390 Linfeng_20130204_CTCF_3.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 326 3.44 0.00 0 22 50 2 616.80310 1232.59892 0.84 23.62 1267 1267 MS2 21/30 Linfeng_20130204_CTCF_10.raw High GSRGGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 45 3.43 0.00 1 0 50 3 697.96362 2091.87632 -2.92 16.82 508 508 MS2 30/100 Linfeng_20130204_CTCF_2.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 530 3.43 0.00 1 16 23 2 926.46521 1851.92314 -2.08 49.97 4156 4156 MS2 19/28 Linfeng_20130204_CTCF_7.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 324 3.43 0.00 0 12 50 2 616.80310 1232.59892 0.84 22.89 1674 1674 MS2 21/30 Linfeng_20130201_rIgG_5.raw High GSRGGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 66 3.43 0.00 1 12 50 3 697.96637 2091.88456 1.02 18.65 1196 1196 MS2 30/100 Linfeng_20130201_rIgG_2.raw High VQALEEANNDLENK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 381 3.42 0.00 0 6 50 2 793.88654 1586.76579 0.04 32.95 2945 2945 MS2 22/26 Linfeng_20130201_rIgG_6.raw High GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 8 3.41 0.00 0 0 50 4 1243.99146 4972.94399 1.48 21.01 1521 1521 MS2 43/390 Linfeng_20130201_rIgG_10.raw High GSRGGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 67 3.41 0.00 1 0 50 3 697.96680 2091.88584 1.63 16.83 960 960 MS2 29/100 Linfeng_20130201_rIgG_7.raw High TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 475 3.41 0.00 1 6 37 3 623.31158 1867.92020 -0.92 39.74 3627 3627 MS2 26/56 Linfeng_20130201_rIgG_6.raw High GSRGGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 49 3.40 0.00 1 0 50 3 697.96448 2091.87888 -1.69 17.07 983 983 MS2 28/100 Linfeng_20130201_rIgG_8.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 3.40 0.00 0 77 50 3 1075.09692 3223.27622 -1.72 59.75 5275 5275 MS2 30/156 Linfeng_20130204_CTCF_7.raw High GSRGGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 55 3.39 0.00 1 6 50 3 697.96570 2091.88254 0.06 17.77 1083 1083 MS2 34/100 Linfeng_20130201_rIgG_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.37 0.00 0 75 50 3 1075.10010 3223.28574 1.24 23.16 1809 1809 MS2 29/156 Linfeng_20130201_rIgG_10.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 334 3.37 0.00 0 6 50 2 616.80255 1232.59783 -0.05 23.19 1847 1847 MS2 20/30 Linfeng_20130201_rIgG_7.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 12 3.36 0.00 0 12 50 3 1075.09412 3223.26780 -4.33 27.81 2357 2357 MS2 29/156 Linfeng_20130201_rIgG_2.raw High TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 471 3.36 0.00 1 5 50 3 623.31207 1867.92167 -0.13 39.66 3584 3584 MS2 24/56 Linfeng_20130201_rIgG_9.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 3.36 0.00 0 0 50 3 1075.09778 3223.27878 -0.92 34.31 3046 3046 MS2 30/156 Linfeng_20130201_rIgG_9.raw High FSSSGGGGGGGRFSSSSGYGGGSSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 79 3.36 0.00 1 0 50 3 733.65216 2198.94193 -1.25 25.16 2058 2058 MS2 26/96 Linfeng_20130201_rIgG_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 21 3.35 0.00 0 0 15 3 1075.09863 3223.28135 -0.13 50.74 4001 4001 MS2 32/156 Linfeng_20130204_CTCF_6.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 29 3.35 0.00 0 0 50 2 896.36792 1791.72856 0.43 18.05 1101 1101 MS2 22/44 Linfeng_20130201_rIgG_4.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 204 3.35 0.00 0 16 31 3 837.38190 2510.13114 -0.29 46.19 4261 4261 MS2 28/88 Linfeng_20130201_rIgG_3.raw High FSSSGGGGGGGRFSSSSGYGGGSSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 84 3.34 0.00 1 0 50 3 733.65363 2198.94632 0.75 24.15 1932 1932 MS2 29/96 Linfeng_20130201_rIgG_3.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 558 3.34 0.00 1 15 19 3 617.98126 1851.92923 1.21 49.88 4171 4171 MS2 26/56 Linfeng_20130204_CTCF_9.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 27 3.33 0.00 0 10 50 2 896.36780 1791.72832 0.29 17.98 1110 1110 MS2 19/44 Linfeng_20130201_rIgG_9.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 572 3.33 0.00 1 12 7 3 617.98035 1851.92649 -0.28 49.65 4721 4721 MS2 27/56 Linfeng_20130201_rIgG_6.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 568 3.33 0.00 1 5 12 3 793.06805 2377.18961 0.57 50.04 4128 4128 MS2 25/80 Linfeng_20130204_CTCF_10.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 529 3.32 0.00 1 5 5 2 926.46613 1851.92497 -1.09 49.73 4700 4700 MS2 20/28 Linfeng_20130201_rIgG_9.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 28 3.32 0.00 0 0 50 3 597.91394 1791.72727 -0.30 18.76 1227 1227 MS2 27/88 Linfeng_20130201_rIgG_6.raw High TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 478 3.32 0.00 1 4 8 3 623.31207 1867.92167 -0.13 39.55 3564 3564 MS2 23/56 Linfeng_20130201_rIgG_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.32 0.00 0 19 50 3 1075.10022 3223.28611 1.35 27.75 2345 2345 MS2 34/156 Linfeng_20130201_rIgG_4.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 317 3.32 0.00 0 15 50 2 616.80157 1232.59587 -1.64 23.50 1323 1323 MS2 19/30 Linfeng_20130204_CTCF_9.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.32 0.00 0 7 50 3 1075.09961 3223.28427 0.78 31.69 2234 2234 MS2 32/156 Linfeng_20130204_CTCF_7.raw High NHKEEMSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 416 3.31 0.00 2 2 14 4 838.91785 3352.64956 1.68 39.36 2791 2791 MS2 44/180 Linfeng_20130204_CTCF_6.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 204 3.31 0.00 0 15 2 3 837.38208 2510.13169 -0.07 45.31 4232 4232 MS2 33/88 Linfeng_20130201_rIgG_8.raw High TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 473 3.30 0.00 1 15 4 3 623.31140 1867.91965 -1.21 40.18 3516 3516 MS2 23/56 Linfeng_20130201_rIgG_5.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 552 3.29 0.00 1 10 14 2 926.46686 1851.92644 -0.30 49.76 4211 4211 MS2 19/28 Linfeng_20130204_CTCF_2.raw High IKFEMEQNLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 496 3.29 0.00 1 42 50 3 436.56393 1307.67725 -0.35 36.63 3257 3257 MS2 19/36 Linfeng_20130201_rIgG_2.raw High IKFEMEQNLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 490 3.29 0.00 1 5 28 3 436.56400 1307.67743 -0.21 38.33 3453 3453 MS2 21/36 Linfeng_20130201_rIgG_1.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 356 3.28 0.00 0 9 50 2 616.80304 1232.59880 0.74 22.26 1083 1083 MS2 17/30 Linfeng_20130204_CTCF_6.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 560 3.28 0.00 1 10 7 3 617.97998 1851.92539 -0.87 49.50 4656 4656 MS2 26/56 Linfeng_20130201_rIgG_4.raw High GSRGGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 58 3.28 0.00 1 64 50 3 697.96576 2091.88272 0.14 16.80 932 932 MS2 26/100 Linfeng_20130201_rIgG_5.raw High DIENQYETQITQIEHEVSSSGQEVQSSAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 341 3.28 0.00 0 0 50 3 1088.84546 3264.52182 2.41 53.52 4284 4284 MS2 24/112 Linfeng_20130204_CTCF_6.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 576 3.28 0.00 1 11 3 3 617.98029 1851.92630 -0.38 49.57 4673 4673 MS2 24/56 Linfeng_20130201_rIgG_10.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 527 3.27 0.00 1 20 18 2 926.46472 1851.92217 -2.61 49.98 4184 4184 MS2 20/28 Linfeng_20130204_CTCF_9.raw High GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 7 3.27 0.00 0 0 50 4 1243.98706 4972.92641 -2.06 19.95 1325 1325 MS2 47/390 Linfeng_20130201_rIgG_5.raw High NHKEEmSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 P35527 M6(Oxidation) CID 1.0000 0.0000 1 1 389 3.26 0.00 2 1 22 4 842.91486 3368.63759 -0.37 35.91 2614 2614 MS2 34/180 Linfeng_20130204_CTCF_10.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 3.26 0.00 0 0 50 3 1075.09802 3223.27951 -0.69 25.43 2117 2117 MS2 31/156 Linfeng_20130201_rIgG_6.raw High IKFEMEQNLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 496 3.26 0.00 1 3 33 3 436.56384 1307.67698 -0.56 37.41 3336 3336 MS2 24/36 Linfeng_20130201_rIgG_2.raw High IKFEMEQNLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 496 3.25 0.00 1 0 40 3 436.56387 1307.67707 -0.49 38.73 3478 3478 MS2 20/36 Linfeng_20130201_rIgG_3.raw High IKFEMEQNLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 530 3.25 0.00 1 12 30 3 436.56351 1307.67597 -1.33 37.88 3364 3364 MS2 20/36 Linfeng_20130201_rIgG_8.raw High KDIENQYETQITQIEHEVSSSGQEVQSSAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 338 3.25 0.00 1 21 50 4 848.91040 3392.61977 3.19 52.29 4959 4959 MS2 35/174 Linfeng_20130201_rIgG_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 3.24 0.00 0 58 50 3 1075.09741 3223.27768 -1.26 31.04 2670 2670 MS2 26/156 Linfeng_20130201_rIgG_8.raw High TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 460 3.24 0.00 1 0 50 2 934.46844 1867.92961 4.12 39.92 2851 2851 MS2 18/28 Linfeng_20130204_CTCF_6.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 28 3.24 0.00 0 0 50 3 597.91339 1791.72562 -1.22 18.36 1161 1161 MS2 21/88 Linfeng_20130201_rIgG_1.raw High HGVQELEIELQSQLSK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 434 3.24 0.00 0 0 37 3 613.32629 1837.96433 -0.63 51.63 4428 4428 MS2 27/60 Linfeng_20130204_CTCF_1.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.23 0.00 0 0 50 4 806.57672 3223.28505 1.02 25.96 2147 2147 MS2 38/234 Linfeng_20130201_rIgG_10.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 3.23 0.00 0 0 50 3 1075.09790 3223.27915 -0.81 26.85 1720 1720 MS2 30/156 Linfeng_20130204_CTCF_8.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 35 3.23 0.00 0 0 50 3 597.91449 1791.72892 0.62 18.50 1183 1183 MS2 32/88 Linfeng_20130201_rIgG_3.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 560 3.23 0.00 1 31 50 3 617.98248 1851.93290 3.18 49.65 3886 3886 MS2 24/56 Linfeng_20130204_CTCF_6.raw High IKFEMEQNLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 525 3.22 0.00 1 2 16 3 436.56317 1307.67496 -2.10 37.82 3386 3386 MS2 22/36 Linfeng_20130201_rIgG_10.raw High IKFEMEQNLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 491 3.22 0.00 1 5 22 3 436.56409 1307.67771 0.00 37.62 3200 3200 MS2 22/36 Linfeng_20130201_rIgG_5.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.22 0.00 0 0 50 3 1075.09937 3223.28354 0.56 26.33 1764 1764 MS2 30/156 Linfeng_20130204_CTCF_1.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.22 0.00 0 0 50 3 1075.10132 3223.28940 2.37 29.45 1805 1805 MS2 25/156 Linfeng_20130204_CTCF_3.raw High TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 434 3.22 0.00 1 0 50 2 934.46588 1867.92449 1.38 39.72 3134 3134 MS2 20/28 Linfeng_20130204_CTCF_2.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.22 0.00 0 0 50 3 1075.10071 3223.28757 1.81 28.36 2466 2466 MS2 32/156 Linfeng_20130201_rIgG_6.raw High FSSSGGGGGGGRFSSSSGYGGGSSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 85 3.21 0.00 1 0 50 3 733.65375 2198.94669 0.91 24.70 2045 2045 MS2 27/96 Linfeng_20130201_rIgG_7.raw High TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 463 3.21 0.00 1 3 50 2 934.46844 1867.92961 4.12 40.06 3068 3068 MS2 20/28 Linfeng_20130204_CTCF_7.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 3.21 0.00 0 24 50 3 1075.09741 3223.27768 -1.26 29.07 2068 2068 MS2 28/156 Linfeng_20130204_CTCF_2.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 34 3.21 0.00 0 0 50 3 597.91473 1791.72965 1.03 18.69 1217 1217 MS2 26/88 Linfeng_20130201_rIgG_6.raw High TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 473 3.21 0.00 1 0 50 2 934.46490 1867.92253 0.33 40.31 3120 3120 MS2 21/28 Linfeng_20130204_CTCF_9.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 567 3.21 0.00 1 21 3 3 617.98047 1851.92685 -0.08 49.27 4602 4602 MS2 24/56 Linfeng_20130201_rIgG_2.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 32 3.20 0.00 0 12 50 2 896.37030 1791.73332 3.08 18.62 675 675 MS2 22/44 Linfeng_20130204_CTCF_10.raw High FSSSSGYGGGSSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 94 3.20 0.00 0 24 50 2 618.26776 1235.52825 -0.42 19.17 1277 1277 MS2 16/24 Linfeng_20130201_rIgG_3.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 578 3.20 0.00 1 14 3 3 617.98035 1851.92649 -0.28 49.07 4675 4675 MS2 27/56 Linfeng_20130201_rIgG_1.raw High GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 9 3.20 0.00 0 5 50 4 1243.98767 4972.92885 -1.57 25.43 2092 2092 MS2 40/390 Linfeng_20130201_rIgG_10.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.19 0.00 0 0 50 3 1075.10156 3223.29013 2.60 28.10 1872 1872 MS2 27/156 Linfeng_20130204_CTCF_7.raw High IKFEMEQNLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 525 3.18 0.00 1 8 39 3 436.56308 1307.67469 -2.31 37.89 3402 3402 MS2 22/36 Linfeng_20130201_rIgG_9.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.18 0.00 0 0 50 3 1075.09912 3223.28281 0.33 32.08 2288 2288 MS2 30/156 Linfeng_20130204_CTCF_9.raw High SSYSRFSSSGGGGGGGR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 135 3.17 0.00 1 32 50 3 521.56915 1562.69291 -0.89 20.12 1345 1345 MS2 28/64 Linfeng_20130201_rIgG_5.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.16 0.00 0 0 50 4 806.57623 3223.28310 0.42 25.84 2193 2193 MS2 38/234 Linfeng_20130201_rIgG_7.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 575 3.16 0.00 1 6 5 3 617.98041 1851.92667 -0.18 49.39 4684 4684 MS2 27/56 Linfeng_20130201_rIgG_5.raw High HGVQELEIELQSQLSK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 433 3.16 0.00 0 12 24 3 613.32599 1837.96341 -1.13 50.58 4778 4778 MS2 29/60 Linfeng_20130201_rIgG_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.16 0.00 0 0 50 3 1075.10071 3223.28757 1.81 25.88 1627 1627 MS2 30/156 Linfeng_20130204_CTCF_7.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.15 0.00 0 0 50 3 1075.10205 3223.29160 3.06 26.89 1530 1530 MS2 29/156 Linfeng_20130204_CTCF_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.15 0.00 0 0 50 3 1075.09985 3223.28501 1.01 30.32 2201 2201 MS2 28/156 Linfeng_20130204_CTCF_2.raw High GSRGGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 66 3.15 0.00 1 0 50 3 697.96637 2091.88456 1.02 16.75 927 927 MS2 30/100 Linfeng_20130201_rIgG_4.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 559 3.14 0.00 1 41 50 2 926.46680 1851.92632 -0.37 49.93 3898 3898 MS2 18/28 Linfeng_20130204_CTCF_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.13 0.00 0 0 50 3 1075.09900 3223.28244 0.21 25.57 2086 2086 MS2 28/156 Linfeng_20130201_rIgG_8.raw High GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 8 3.13 0.00 0 0 50 4 1243.99304 4972.95034 2.75 23.24 1830 1830 MS2 42/390 Linfeng_20130201_rIgG_9.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.13 0.00 0 69 50 3 1075.09888 3223.28208 0.10 23.85 1895 1895 MS2 21/156 Linfeng_20130201_rIgG_3.raw High IKFEMEQNLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 496 3.13 0.00 1 9 40 3 436.56381 1307.67688 -0.63 38.23 2875 2875 MS2 17/36 Linfeng_20130204_CTCF_8.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 586 3.12 0.00 1 3 26 3 617.98206 1851.93161 2.49 50.08 4132 4132 MS2 22/56 Linfeng_20130204_CTCF_10.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 3.12 0.00 0 0 50 3 1075.09692 3223.27622 -1.72 25.00 1515 1515 MS2 30/156 Linfeng_20130204_CTCF_8.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 347 3.12 0.00 0 20 50 2 616.80225 1232.59722 -0.55 22.97 1752 1752 MS2 20/30 Linfeng_20130201_rIgG_4.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 533 3.11 0.00 1 11 16 2 926.46631 1851.92534 -0.90 49.64 4682 4682 MS2 19/28 Linfeng_20130201_rIgG_10.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 16 3.10 0.00 0 0 50 3 1075.09485 3223.26999 -3.65 25.40 2113 2113 MS2 22/156 Linfeng_20130201_rIgG_6.raw High NHKEEmSQLTGQNSGDVNVEINVAPGK Unambiguous 1 1 P35527 M6(Oxidation) CID 1.0000 0.0000 1 1 447 3.10 0.00 1 13 50 4 728.60187 2911.38564 0.16 33.37 3037 3037 MS2 34/156 Linfeng_20130201_rIgG_7.raw High TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 425 3.10 0.00 1 2 42 2 934.46411 1867.92095 -0.52 39.68 3579 3579 MS2 17/28 Linfeng_20130201_rIgG_10.raw High FSSSGGGGGGGRFSSSSGYGGGSSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 79 3.10 0.00 1 8 50 3 733.65228 2198.94229 -1.09 24.22 1813 1813 MS2 30/96 Linfeng_20130201_rIgG_5.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 581 3.09 0.00 1 0 2 3 617.98199 1851.93143 2.39 50.42 3969 3969 MS2 23/56 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.09 0.00 0 0 50 3 1075.10022 3223.28611 1.35 28.50 1919 1919 MS2 29/156 Linfeng_20130204_CTCF_7.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 549 3.09 0.00 1 10 31 2 926.46722 1851.92717 0.09 49.62 4671 4671 MS2 20/28 Linfeng_20130201_rIgG_4.raw High IKFEMEQNLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 497 3.09 0.00 1 8 37 3 436.56390 1307.67716 -0.42 37.81 3367 3367 MS2 20/36 Linfeng_20130201_rIgG_4.raw High TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 465 3.08 0.00 1 0 1 3 623.31287 1867.92405 1.14 39.76 3586 3586 MS2 26/56 Linfeng_20130201_rIgG_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.08 0.00 0 0 50 3 1075.09973 3223.28464 0.90 22.42 1681 1681 MS2 27/156 Linfeng_20130201_rIgG_4.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.07 0.00 0 0 50 3 1075.10254 3223.29306 3.51 28.13 1663 1663 MS2 28/156 Linfeng_20130204_CTCF_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.07 0.00 0 1 50 3 1075.10205 3223.29160 3.06 26.57 1497 1497 MS2 26/156 Linfeng_20130204_CTCF_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.07 0.00 0 0 50 3 1075.09937 3223.28354 0.56 26.60 1614 1614 MS2 26/156 Linfeng_20130204_CTCF_10.raw High NHKEEmSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 P35527 M6(Oxidation) CID 1.0000 0.0000 1 1 395 3.07 0.00 2 16 50 4 842.91730 3368.64736 2.53 37.04 2546 2546 MS2 32/180 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.06 0.00 0 0 50 4 806.57611 3223.28261 0.27 26.71 1525 1525 MS2 48/234 Linfeng_20130204_CTCF_6.raw High FSSSGGGGGGGR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 164 3.06 0.00 0 3 50 2 491.72000 982.43273 -1.05 15.93 370 370 MS2 19/22 Linfeng_20130204_CTCF_6.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 548 3.06 0.00 1 36 50 2 926.46875 1851.93022 1.74 50.00 3906 3906 MS2 18/28 Linfeng_20130204_CTCF_4.raw High QGVDADINGLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 387 3.06 0.00 0 11 50 2 579.29877 1157.59026 -0.63 34.47 2289 2289 MS2 17/20 Linfeng_20130204_CTCF_6.raw High NHKEEmSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 P35527 M6(Oxidation) CID 1.0000 0.0000 1 1 388 3.05 0.00 2 14 50 4 842.91718 3368.64687 2.38 35.44 2602 2602 MS2 37/180 Linfeng_20130204_CTCF_7.raw High GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 8 3.05 0.00 0 12 38 4 1243.99097 4972.94204 1.08 45.61 3460 3460 MS2 48/390 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.05 0.00 0 0 50 3 1075.10120 3223.28904 2.26 24.53 1520 1520 MS2 30/156 Linfeng_20130204_CTCF_2.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 27 3.05 0.00 0 0 50 2 896.36572 1791.72417 -2.03 18.01 1110 1110 MS2 18/44 Linfeng_20130201_rIgG_8.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.04 0.00 0 23 50 3 1075.09924 3223.28318 0.44 27.34 1700 1700 MS2 26/156 Linfeng_20130204_CTCF_10.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.04 0.00 0 0 50 4 806.57605 3223.28237 0.19 25.89 1447 1447 MS2 40/234 Linfeng_20130204_CTCF_6.raw High NHKEEmSQLTGQNSGDVNVEINVAPGK Unambiguous 1 1 P35527 M6(Oxidation) CID 1.0000 0.0000 1 1 426 3.03 0.00 1 13 50 4 728.60126 2911.38320 -0.68 33.34 2950 2950 MS2 34/156 Linfeng_20130201_rIgG_9.raw High IKFEMEQNLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 529 3.03 0.00 1 1 50 3 436.56348 1307.67588 -1.40 38.98 3513 3513 MS2 19/36 Linfeng_20130201_rIgG_9.raw High GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 8 3.03 0.00 0 26 50 4 1243.99255 4972.94838 2.36 60.18 5073 5073 MS2 42/390 Linfeng_20130204_CTCF_6.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 572 3.02 0.00 1 17 18 2 926.46722 1851.92717 0.09 49.74 4733 4733 MS2 17/28 Linfeng_20130201_rIgG_6.raw High TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 488 3.02 0.00 1 3 50 2 934.46649 1867.92571 2.03 39.98 2865 2865 MS2 15/28 Linfeng_20130204_CTCF_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 3.02 0.00 0 6 50 4 806.57532 3223.27944 -0.72 25.70 2121 2121 MS2 40/234 Linfeng_20130201_rIgG_10.raw High IKFEMEQNLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 528 3.02 0.00 1 10 50 3 436.56351 1307.67597 -1.33 37.65 3367 3367 MS2 22/36 Linfeng_20130201_rIgG_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.01 0.00 0 0 50 3 1075.09924 3223.28318 0.44 26.68 1803 1803 MS2 26/156 Linfeng_20130204_CTCF_1.raw High IKFEMEQNLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 530 3.01 0.00 1 3 50 3 436.56332 1307.67542 -1.75 37.54 2956 2956 MS2 17/36 Linfeng_20130204_CTCF_1.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 580 3.01 0.00 1 4 11 3 617.98041 1851.92667 -0.18 50.03 4722 4722 MS2 23/56 Linfeng_20130201_rIgG_4.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.01 0.00 0 0 50 3 1075.10095 3223.28830 2.03 28.45 1896 1896 MS2 28/156 Linfeng_20130204_CTCF_8.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 3.00 0.00 0 0 50 3 1075.09753 3223.27805 -1.15 30.24 2593 2593 MS2 31/156 Linfeng_20130201_rIgG_8.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 211 3.00 0.00 0 2 33 3 837.38348 2510.13590 1.60 45.44 3424 3424 MS2 22/88 Linfeng_20130204_CTCF_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.00 0.00 0 0 50 3 1075.09961 3223.28427 0.78 60.48 5412 5412 MS2 26/156 Linfeng_20130204_CTCF_8.raw Medium GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 3.00 0.00 0 0 29 4 806.57697 3223.28603 1.33 26.13 1469 1469 MS2 47/234 Linfeng_20130204_CTCF_6.raw Medium GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 9 3.00 0.00 0 0 50 4 1243.99036 4972.93960 0.59 22.89 1766 1766 MS2 47/390 Linfeng_20130201_rIgG_8.raw Medium GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 9 3.00 0.00 0 3 50 4 1243.98926 4972.93520 -0.29 19.88 1318 1318 MS2 47/390 Linfeng_20130201_rIgG_5.raw High HGVQELEIELQSQLSK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 434 3.00 0.00 0 33 50 3 613.32983 1837.97495 5.15 52.02 4443 4443 MS2 21/60 Linfeng_20130204_CTCF_2.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.99 0.00 0 4 50 3 1075.10303 3223.29453 3.96 25.55 1391 1391 MS2 29/156 Linfeng_20130204_CTCF_3.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 558 2.99 0.00 1 8 50 3 617.98096 1851.92832 0.71 52.22 4952 4952 MS2 24/56 Linfeng_20130201_rIgG_3.raw Medium NHKEEmSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 P35527 M6(Oxidation) CID 1.0000 0.0000 1 1 398 2.99 0.00 2 2 50 4 842.91541 3368.63979 0.28 35.29 2685 2685 MS2 32/180 Linfeng_20130204_CTCF_2.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 25 2.99 0.00 0 0 50 2 896.36749 1791.72771 -0.05 17.97 1109 1109 MS2 19/44 Linfeng_20130201_rIgG_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.99 0.00 0 0 50 3 1075.10120 3223.28904 2.26 27.09 1671 1671 MS2 28/156 Linfeng_20130204_CTCF_10.raw High TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 458 2.99 0.00 1 7 50 2 934.46552 1867.92375 0.98 40.39 2904 2904 MS2 16/28 Linfeng_20130204_CTCF_4.raw High GSRGGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 67 2.98 0.00 1 61 50 3 697.96655 2091.88510 1.28 22.56 1743 1743 MS2 23/100 Linfeng_20130201_rIgG_3.raw High FSSSSGYGGGSSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 96 2.98 0.00 0 20 50 2 618.26813 1235.52898 0.18 19.28 1245 1245 MS2 16/24 Linfeng_20130201_rIgG_5.raw High NYSPYYNTIDDLK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 242 2.98 0.00 0 5 12 2 803.37445 1605.74162 -0.95 44.91 4168 4168 MS2 20/24 Linfeng_20130201_rIgG_1.raw Medium NHKEEmSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 P35527 M6(Oxidation) CID 1.0000 0.0000 1 1 383 2.97 0.00 2 0 50 4 842.91650 3368.64419 1.59 36.45 3248 3248 MS2 39/180 Linfeng_20130201_rIgG_10.raw High HGVQELEIELQSQLSK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 451 2.97 0.00 0 18 50 3 613.32526 1837.96122 -2.33 52.23 4133 4133 MS2 22/60 Linfeng_20130204_CTCF_3.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 35 2.97 0.00 0 0 50 3 597.91461 1791.72928 0.83 19.50 793 793 MS2 25/88 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 21 2.97 0.00 0 0 50 3 1075.10046 3223.28684 1.58 27.12 1759 1759 MS2 26/156 Linfeng_20130204_CTCF_7.raw High TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 434 2.96 0.00 1 0 47 2 934.46448 1867.92168 -0.13 39.36 3565 3565 MS2 17/28 Linfeng_20130201_rIgG_1.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 367 2.96 0.00 0 25 50 2 616.80267 1232.59807 0.15 23.53 1257 1257 MS2 18/30 Linfeng_20130204_CTCF_10.raw Medium GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 9 2.96 0.00 0 3 50 4 1243.99036 4972.93960 0.59 21.98 1662 1662 MS2 44/390 Linfeng_20130201_rIgG_9.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.96 0.00 0 0 50 3 1075.09961 3223.28427 0.78 31.59 2241 2241 MS2 26/156 Linfeng_20130204_CTCF_9.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.96 0.00 0 0 50 3 1075.10364 3223.29636 4.53 26.54 1788 1788 MS2 29/156 Linfeng_20130204_CTCF_1.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 2.96 0.00 0 0 50 3 1075.09741 3223.27768 -1.26 27.88 2361 2361 MS2 31/156 Linfeng_20130201_rIgG_4.raw High GSRGGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 48 2.96 0.00 1 0 50 3 697.96466 2091.87943 -1.43 16.79 942 942 MS2 28/100 Linfeng_20130201_rIgG_10.raw High FSSSGGGGGGGRFSSSSGYGGGSSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 82 2.96 0.00 1 0 50 3 733.65332 2198.94541 0.33 23.86 1873 1873 MS2 24/96 Linfeng_20130201_rIgG_2.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.96 0.00 0 0 50 3 1075.10046 3223.28684 1.58 25.44 2065 2065 MS2 22/156 Linfeng_20130201_rIgG_4.raw High SSYSRFSSSGGGGGGGR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 134 2.95 0.00 1 66 50 3 521.56921 1562.69309 -0.77 20.23 1421 1421 MS2 26/64 Linfeng_20130201_rIgG_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.95 0.00 0 4 50 3 1075.09827 3223.28025 -0.47 25.69 1667 1667 MS2 30/156 Linfeng_20130204_CTCF_2.raw High HGVQELEIELQSQLSKK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 346 2.95 0.00 1 22 50 3 656.02838 1966.07059 5.15 52.03 4130 4130 MS2 20/64 Linfeng_20130204_CTCF_6.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 553 2.95 0.00 1 29 50 2 926.46753 1851.92778 0.42 50.23 4149 4149 MS2 18/28 Linfeng_20130204_CTCF_10.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 537 2.95 0.00 1 20 22 2 926.46606 1851.92485 -1.16 49.72 4769 4769 MS2 18/28 Linfeng_20130201_rIgG_7.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 206 2.95 0.00 0 10 18 3 837.38397 2510.13736 2.19 45.35 3684 3684 MS2 25/88 Linfeng_20130204_CTCF_8.raw High QVLDNLTMEK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 595 2.94 0.00 0 20 50 2 595.80804 1190.60881 0.17 37.90 2648 2648 MS2 13/18 Linfeng_20130204_CTCF_4.raw Medium GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 2.94 0.00 0 0 50 4 806.57495 3223.27797 -1.17 25.90 2170 2170 MS2 43/234 Linfeng_20130201_rIgG_6.raw High IKFEMEQNLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 495 2.94 0.00 1 10 50 3 436.56339 1307.67560 -1.61 37.24 3342 3342 MS2 18/36 Linfeng_20130201_rIgG_1.raw Medium GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 9 2.94 0.00 0 10 50 4 1243.98779 4972.92934 -1.47 26.88 2258 2258 MS2 42/390 Linfeng_20130201_rIgG_9.raw High IKFEMEQNLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 504 2.93 0.00 1 15 38 3 436.56363 1307.67633 -1.05 38.04 3451 3451 MS2 21/36 Linfeng_20130201_rIgG_6.raw High NYSPYYNTIDDLKDQIVDLTVGNNK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 456 2.93 0.00 1 0 31 3 968.14185 2902.41098 0.14 58.45 5773 5773 MS2 22/96 Linfeng_20130201_rIgG_1.raw Medium GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.93 0.00 0 0 50 4 806.57751 3223.28823 2.01 25.67 2128 2128 MS2 40/234 Linfeng_20130201_rIgG_9.raw High NYSPYYNTIDDLK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 246 2.93 0.00 0 14 50 2 803.37268 1605.73808 -3.16 45.02 4121 4121 MS2 18/24 Linfeng_20130201_rIgG_2.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 36 2.93 0.00 0 0 50 2 896.37134 1791.73540 4.24 18.32 591 591 MS2 17/44 Linfeng_20130204_CTCF_4.raw Medium GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.92 0.00 0 2 50 4 806.57703 3223.28628 1.40 26.39 1494 1494 MS2 39/234 Linfeng_20130204_CTCF_6.raw High IKFEMEQNLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 488 2.92 0.00 1 4 50 3 436.56430 1307.67835 0.49 38.54 3452 3452 MS2 20/36 Linfeng_20130201_rIgG_2.raw High TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 476 2.92 0.00 1 2 33 3 623.31165 1867.92038 -0.82 40.31 3634 3634 MS2 22/56 Linfeng_20130201_rIgG_2.raw High GSRGGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 49 2.91 0.00 1 11 50 3 697.96436 2091.87851 -1.87 18.80 1202 1202 MS2 22/100 Linfeng_20130201_rIgG_4.raw Medium GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 9 2.91 0.00 0 0 50 4 1243.98999 4972.93813 0.30 24.97 2034 2034 MS2 42/390 Linfeng_20130201_rIgG_10.raw High FSSSSGYGGGSSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 83 2.91 0.00 0 24 50 2 618.26721 1235.52715 -1.31 19.24 1283 1283 MS2 19/24 Linfeng_20130201_rIgG_8.raw High TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 448 2.90 0.00 1 7 50 2 934.46539 1867.92351 0.85 39.89 3642 3642 MS2 18/28 Linfeng_20130201_rIgG_6.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 332 2.90 0.00 0 11 50 2 616.80322 1232.59917 1.04 22.32 1200 1200 MS2 15/30 Linfeng_20130204_CTCF_7.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.90 0.00 0 80 50 3 1075.10059 3223.28720 1.69 25.59 1655 1655 MS2 22/156 Linfeng_20130204_CTCF_2.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 27 2.90 0.00 0 0 50 3 597.91406 1791.72763 -0.09 18.48 1180 1180 MS2 32/88 Linfeng_20130201_rIgG_9.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 21 2.89 0.00 0 0 50 3 1075.09998 3223.28537 1.12 60.75 5134 5134 MS2 28/156 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 2.89 0.00 0 0 50 3 1075.10144 3223.28977 2.49 26.27 1757 1757 MS2 28/156 Linfeng_20130204_CTCF_1.raw High FSSSSGYGGGSSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 93 2.89 0.00 0 22 50 2 618.26764 1235.52800 -0.61 19.23 1279 1279 MS2 19/24 Linfeng_20130201_rIgG_10.raw Medium NHKEEmSQLTGQNSGDVNVEINVAPGK Unambiguous 1 1 P35527 M6(Oxidation) CID 1.0000 0.0000 1 1 438 2.88 0.00 1 18 50 4 728.60211 2911.38662 0.49 34.52 3054 3054 MS2 33/156 Linfeng_20130201_rIgG_3.raw High NYSPYYNTIDDLK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 250 2.88 0.00 0 5 23 2 803.37451 1605.74175 -0.87 45.25 4159 4159 MS2 19/24 Linfeng_20130201_rIgG_3.raw High TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 479 2.87 0.00 1 6 22 3 623.31207 1867.92167 -0.13 39.23 3523 3523 MS2 21/56 Linfeng_20130201_rIgG_2.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 569 2.87 0.00 1 13 14 3 617.98242 1851.93271 3.08 49.83 4140 4140 MS2 22/56 Linfeng_20130204_CTCF_7.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.87 0.00 0 0 50 3 1075.09814 3223.27988 -0.58 25.21 2065 2065 MS2 29/156 Linfeng_20130201_rIgG_10.raw High FSSSGGGGGGGRFSSSSGYGGGSSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 81 2.87 0.00 1 0 50 3 733.65240 2198.94266 -0.92 24.86 2002 2002 MS2 30/96 Linfeng_20130201_rIgG_2.raw Medium GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 8 2.87 0.00 0 18 50 4 1243.99292 4972.94985 2.65 21.06 1075 1075 MS2 41/390 Linfeng_20130204_CTCF_2.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 533 2.86 0.00 1 9 13 2 926.46661 1851.92595 -0.57 49.11 4680 4680 MS2 20/28 Linfeng_20130201_rIgG_1.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.86 0.00 0 13 50 3 1075.09875 3223.28171 -0.01 25.90 1539 1539 MS2 25/156 Linfeng_20130204_CTCF_10.raw High TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 432 2.86 0.00 1 0 50 2 934.46619 1867.92510 1.70 39.74 3571 3571 MS2 18/28 Linfeng_20130201_rIgG_4.raw High TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 466 2.86 0.00 1 14 22 3 623.31311 1867.92478 1.53 39.81 2839 2839 MS2 17/56 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.86 0.00 0 0 50 3 1075.09998 3223.28537 1.12 28.05 1942 1942 MS2 28/156 Linfeng_20130204_CTCF_2.raw Medium GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.86 0.00 0 0 50 4 806.57697 3223.28603 1.33 25.54 2080 2080 MS2 40/234 Linfeng_20130201_rIgG_2.raw Medium GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 8 2.86 0.00 0 0 50 4 1243.99170 4972.94497 1.67 20.29 937 937 MS2 39/390 Linfeng_20130204_CTCF_7.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.86 0.00 0 13 50 3 1075.09937 3223.28354 0.56 25.76 1602 1602 MS2 27/156 Linfeng_20130204_CTCF_8.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 356 2.85 0.00 0 10 50 2 616.80273 1232.59819 0.24 22.09 1214 1214 MS2 15/30 Linfeng_20130204_CTCF_2.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 416 2.85 0.00 0 20 50 2 616.80475 1232.60222 3.51 23.38 1145 1145 MS2 16/30 Linfeng_20130204_CTCF_4.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.85 0.00 0 0 50 3 1075.10107 3223.28867 2.15 28.73 2046 2046 MS2 24/156 Linfeng_20130204_CTCF_1.raw High FSSSSGYGGGSSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 97 2.85 0.00 0 10 50 2 618.26801 1235.52873 -0.02 20.53 898 898 MS2 15/24 Linfeng_20130204_CTCF_6.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 539 2.85 0.00 1 7 10 2 926.46710 1851.92693 -0.04 49.48 4646 4646 MS2 19/28 Linfeng_20130201_rIgG_3.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 540 2.85 0.00 1 6 14 2 926.46661 1851.92595 -0.57 49.50 4699 4699 MS2 18/28 Linfeng_20130201_rIgG_5.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.85 0.00 0 0 50 3 1075.10144 3223.28977 2.49 29.64 2130 2130 MS2 24/156 Linfeng_20130204_CTCF_2.raw High TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 510 2.84 0.00 1 14 10 3 623.31128 1867.91928 -1.41 39.24 3552 3552 MS2 20/56 Linfeng_20130201_rIgG_1.raw High FSSSGGGGGGGRFSSSSGYGGGSSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 83 2.84 0.00 1 0 50 3 733.65265 2198.94339 -0.59 24.09 1892 1892 MS2 24/96 Linfeng_20130201_rIgG_4.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.84 0.00 0 0 50 3 1075.09985 3223.28501 1.01 27.19 1762 1762 MS2 26/156 Linfeng_20130204_CTCF_9.raw High GSRGGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 66 2.84 0.00 1 26 50 3 697.96631 2091.88437 0.93 17.03 492 492 MS2 27/100 Linfeng_20130204_CTCF_10.raw High GSRGGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 52 2.83 0.00 1 6 50 3 697.96503 2091.88053 -0.91 17.76 1063 1063 MS2 28/100 Linfeng_20130201_rIgG_4.raw Medium GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 8 2.83 0.00 0 0 18 4 1243.99133 4972.94350 1.38 20.77 923 923 MS2 42/390 Linfeng_20130204_CTCF_6.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 557 2.83 0.00 1 17 7 3 617.98004 1851.92557 -0.77 49.57 4678 4678 MS2 26/56 Linfeng_20130201_rIgG_9.raw Medium GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 7 2.83 0.00 0 100 50 4 1243.98645 4972.92397 -2.55 20.63 1405 1405 MS2 41/390 Linfeng_20130201_rIgG_5.raw High TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 469 2.82 0.00 1 10 32 3 623.31146 1867.91983 -1.11 39.61 3558 3558 MS2 26/56 Linfeng_20130201_rIgG_4.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 27 2.81 0.00 0 11 50 2 896.36652 1791.72576 -1.14 18.20 666 666 MS2 15/44 Linfeng_20130204_CTCF_8.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.81 0.00 0 0 50 3 1075.09888 3223.28208 0.10 26.39 1771 1771 MS2 27/156 Linfeng_20130204_CTCF_1.raw High GSRGGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 60 2.81 0.00 1 4 50 3 697.96588 2091.88309 0.32 17.64 1063 1063 MS2 32/100 Linfeng_20130201_rIgG_2.raw High HGVQELEIELQSQLSK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 439 2.80 0.00 0 17 50 3 613.32617 1837.96396 -0.83 52.23 4396 4396 MS2 20/60 Linfeng_20130204_CTCF_7.raw High GSRGGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 49 2.80 0.00 1 11 50 3 697.96423 2091.87815 -2.04 16.77 942 942 MS2 29/100 Linfeng_20130201_rIgG_8.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 561 2.80 0.00 1 9 20 3 617.98254 1851.93308 3.28 49.33 4187 4187 MS2 19/56 Linfeng_20130204_CTCF_1.raw High GSRGGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 55 2.80 0.00 1 6 50 3 697.96570 2091.88254 0.06 17.23 984 984 MS2 30/100 Linfeng_20130201_rIgG_5.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 544 2.80 0.00 1 38 24 2 926.46619 1851.92510 -1.03 49.31 4607 4607 MS2 19/28 Linfeng_20130201_rIgG_2.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 35 2.80 0.00 0 0 50 3 597.91486 1791.73001 1.24 18.65 695 695 MS2 26/88 Linfeng_20130204_CTCF_6.raw High IKFEMEQNLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 530 2.80 0.00 1 8 50 3 436.56351 1307.67597 -1.33 38.54 2881 2881 MS2 17/36 Linfeng_20130204_CTCF_10.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.79 0.00 0 7 50 3 1075.09851 3223.28098 -0.24 25.32 1547 1547 MS2 25/156 Linfeng_20130204_CTCF_9.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.78 0.00 0 0 50 3 1075.09912 3223.28281 0.33 27.01 1663 1663 MS2 24/156 Linfeng_20130204_CTCF_10.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 563 2.78 0.00 1 5 8 3 617.98151 1851.92997 1.60 49.70 4216 4216 MS2 20/56 Linfeng_20130204_CTCF_8.raw Medium GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 7 2.78 0.00 0 86 50 4 1243.98755 4972.92837 -1.67 24.84 2029 2029 MS2 45/390 Linfeng_20130201_rIgG_9.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.78 0.00 0 0 50 3 1075.10083 3223.28794 1.92 28.46 1915 1915 MS2 26/156 Linfeng_20130204_CTCF_7.raw High TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 473 2.77 0.00 1 15 43 3 623.31177 1867.92075 -0.62 39.91 2855 2855 MS2 20/56 Linfeng_20130204_CTCF_4.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.77 0.00 0 0 50 3 1075.10303 3223.29453 3.96 29.59 1819 1819 MS2 28/156 Linfeng_20130204_CTCF_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.77 0.00 0 59 50 3 1075.10144 3223.28977 2.49 24.08 1962 1962 MS2 24/156 Linfeng_20130201_rIgG_7.raw High IKFEMEQNLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 530 2.77 0.00 1 26 50 3 436.56332 1307.67542 -1.75 37.89 3487 3487 MS2 20/36 Linfeng_20130201_rIgG_7.raw High SSYSRFSSSGGGGGGGR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 137 2.77 0.00 1 40 50 3 521.56903 1562.69254 -1.12 20.28 1435 1435 MS2 27/64 Linfeng_20130201_rIgG_6.raw High TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 417 2.77 0.00 1 0 50 2 934.46411 1867.92095 -0.52 39.75 3593 3593 MS2 19/28 Linfeng_20130201_rIgG_9.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 386 2.76 0.00 0 22 50 2 616.80432 1232.60137 2.82 22.33 1043 1043 MS2 17/30 Linfeng_20130204_CTCF_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 21 2.76 0.00 0 0 50 3 1075.10266 3223.29343 3.62 25.76 1413 1413 MS2 27/156 Linfeng_20130204_CTCF_3.raw High FSSSGGGGGGGRFSSSSGYGGGSSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 85 2.76 0.00 1 0 50 3 733.65393 2198.94724 1.16 24.31 1970 1970 MS2 25/96 Linfeng_20130201_rIgG_6.raw Medium NHKEEmSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 P35527 M6(Oxidation) CID 1.0000 0.0000 1 1 387 2.75 0.00 2 83 50 4 842.91608 3368.64248 1.08 59.22 4978 4978 MS2 30/180 Linfeng_20130204_CTCF_6.raw High TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 443 2.75 0.00 1 7 50 2 934.46509 1867.92290 0.53 39.81 3686 3686 MS2 17/28 Linfeng_20130201_rIgG_7.raw Medium NHKEEmSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 P35527 M6(Oxidation) CID 1.0000 0.0000 1 1 383 2.75 0.00 2 5 50 4 842.91650 3368.64419 1.59 37.38 2580 2580 MS2 31/180 Linfeng_20130204_CTCF_6.raw High TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 429 2.75 0.00 1 0 42 2 934.46466 1867.92204 0.07 40.16 3624 3624 MS2 18/28 Linfeng_20130201_rIgG_8.raw Medium GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 2.75 0.00 0 25 50 4 806.57507 3223.27846 -1.02 25.85 2117 2117 MS2 42/234 Linfeng_20130201_rIgG_8.raw High LEKEIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 344 2.74 0.00 1 0 50 3 960.78876 2880.35172 -0.62 45.80 4202 4202 MS2 34/100 Linfeng_20130201_rIgG_2.raw High DIENQYETQITQIEHEVSSSGQEVQSSAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 339 2.74 0.00 0 24 50 3 1088.84521 3264.52109 2.18 53.79 4310 4310 MS2 20/112 Linfeng_20130204_CTCF_6.raw High FSSSSGYGGGSSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 99 2.73 0.00 0 30 50 2 618.26819 1235.52910 0.27 20.12 915 915 MS2 16/24 Linfeng_20130204_CTCF_7.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 27 2.73 0.00 0 49 50 2 896.36682 1791.72637 -0.80 60.30 5084 5084 MS2 17/44 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 2.72 0.00 0 0 50 3 1075.09912 3223.28281 0.33 29.15 1986 1986 MS2 24/156 Linfeng_20130204_CTCF_7.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.71 0.00 0 0 50 3 1075.10107 3223.28867 2.15 27.71 1819 1819 MS2 24/156 Linfeng_20130204_CTCF_8.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.71 0.00 0 0 50 3 1075.10022 3223.28611 1.35 29.60 2032 2032 MS2 26/156 Linfeng_20130204_CTCF_7.raw Medium GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.71 0.00 0 12 50 4 806.57617 3223.28286 0.34 25.76 2125 2125 MS2 38/234 Linfeng_20130201_rIgG_3.raw High FSSSSGYGGGSSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 90 2.71 0.00 0 27 50 2 618.26825 1235.52922 0.37 19.20 1254 1254 MS2 14/24 Linfeng_20130201_rIgG_4.raw High FSSSSGYGGGSSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 95 2.71 0.00 0 25 50 2 618.26825 1235.52922 0.37 20.18 1414 1414 MS2 18/24 Linfeng_20130201_rIgG_3.raw High QVLDNLTMEK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 512 2.71 0.00 0 15 50 2 595.80927 1190.61125 2.22 37.44 2945 2945 MS2 12/18 Linfeng_20130204_CTCF_1.raw High TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 442 2.70 0.00 1 0 50 2 934.46484 1867.92241 0.26 39.35 3536 3536 MS2 18/28 Linfeng_20130201_rIgG_2.raw Medium VQALEEANNDLENKIQDWYDKK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 465 2.70 0.00 2 21 50 4 666.57910 2663.29458 -0.11 51.73 4926 4926 MS2 31/126 Linfeng_20130201_rIgG_9.raw High TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 445 2.70 0.00 1 0 50 2 934.46429 1867.92131 -0.32 39.63 3572 3572 MS2 18/28 Linfeng_20130201_rIgG_3.raw Medium NHKEEmSQLTGQNSGDVNVEINVAPGK Unambiguous 1 1 P35527 M6(Oxidation) CID 1.0000 0.0000 1 1 437 2.70 0.00 1 2 50 4 728.60205 2911.38637 0.41 33.98 2419 2419 MS2 31/156 Linfeng_20130204_CTCF_10.raw High TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 488 2.69 0.00 1 8 47 3 623.31232 1867.92240 0.26 40.75 3688 3688 MS2 23/56 Linfeng_20130201_rIgG_3.raw Medium NHKEEmSQLTGQNSGDVNVEINVAPGK Unambiguous 1 1 P35527 M6(Oxidation) CID 1.0000 0.0000 1 1 431 2.69 0.00 1 8 50 4 728.60132 2911.38344 -0.60 33.61 2399 2399 MS2 33/156 Linfeng_20130204_CTCF_8.raw High VQALEEANNDLENK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 401 2.68 0.00 0 22 50 3 529.59277 1586.76377 -1.24 33.16 2377 2377 MS2 21/52 Linfeng_20130204_CTCF_7.raw High TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 438 2.68 0.00 1 33 33 2 934.46442 1867.92156 -0.19 39.56 3443 3443 MS2 15/28 Linfeng_20130201_rIgG_5.raw High IKFEMEQNLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 495 2.68 0.00 1 19 50 3 436.56335 1307.67551 -1.68 38.74 3498 3498 MS2 19/36 Linfeng_20130201_rIgG_1.raw Medium NHKEEmSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 P35527 M6(Oxidation) CID 1.0000 0.0000 1 1 388 2.68 0.00 2 12 50 4 842.91614 3368.64272 1.15 35.51 2409 2409 MS2 25/180 Linfeng_20130204_CTCF_4.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 21 2.67 0.00 0 0 50 3 1075.09985 3223.28501 1.01 26.96 1741 1741 MS2 24/156 Linfeng_20130204_CTCF_7.raw High STMQELNSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 258 2.67 0.00 0 13 50 2 533.25067 1065.49407 -4.99 24.11 1273 1273 MS2 14/16 Linfeng_20130204_CTCF_6.raw High GSRGGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 49 2.67 0.00 1 15 50 3 697.96478 2091.87979 -1.26 19.82 1348 1348 MS2 27/100 Linfeng_20130201_rIgG_2.raw High STMQELNSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 292 2.67 0.00 0 0 50 2 533.25214 1065.49700 -2.24 22.83 1667 1667 MS2 14/16 Linfeng_20130201_rIgG_5.raw High GSRGGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 55 2.67 0.00 1 80 50 3 697.96564 2091.88236 -0.03 16.77 948 948 MS2 29/100 Linfeng_20130201_rIgG_3.raw Medium GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 8 2.66 0.00 0 0 37 4 1243.99084 4972.94155 0.98 50.48 3975 3975 MS2 43/390 Linfeng_20130204_CTCF_6.raw High QVLDNLTMEK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 554 2.65 0.00 0 0 3 2 595.80847 1190.60967 0.89 37.83 2626 2626 MS2 15/18 Linfeng_20130204_CTCF_6.raw High GSRGGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 53 2.65 0.00 1 5 50 3 697.96545 2091.88181 -0.29 16.90 970 970 MS2 25/100 Linfeng_20130201_rIgG_6.raw High GSRGGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 53 2.65 0.00 1 9 50 3 697.96552 2091.88199 -0.21 20.71 1467 1467 MS2 27/100 Linfeng_20130201_rIgG_2.raw Medium GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 8 2.65 0.00 0 32 50 4 1243.99146 4972.94399 1.48 22.00 1648 1648 MS2 49/390 Linfeng_20130201_rIgG_8.raw Medium NHKEEMSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 417 2.65 0.00 2 0 50 4 838.91571 3352.64101 -0.87 38.23 3427 3427 MS2 29/180 Linfeng_20130201_rIgG_10.raw High QVLDNLTMEK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 451 2.64 0.00 0 17 50 2 595.80743 1190.60759 -0.86 37.69 2924 2924 MS2 11/18 Linfeng_20130204_CTCF_2.raw High GSRGGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 53 2.63 0.00 1 10 50 3 697.96558 2091.88218 -0.12 19.66 1329 1329 MS2 27/100 Linfeng_20130201_rIgG_2.raw High FSSSSGYGGGSSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 94 2.63 0.00 0 25 50 2 618.26776 1235.52825 -0.42 19.19 1279 1279 MS2 19/24 Linfeng_20130201_rIgG_9.raw High FSSSGGGGGGGRFSSSSGYGGGSSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 81 2.63 0.00 1 0 50 3 733.65247 2198.94284 -0.84 25.35 2055 2055 MS2 26/96 Linfeng_20130201_rIgG_4.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.63 0.00 0 0 50 3 1075.09814 3223.27988 -0.58 28.19 1884 1884 MS2 25/156 Linfeng_20130204_CTCF_9.raw High TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 473 2.63 0.00 1 5 4 3 623.31134 1867.91947 -1.31 40.59 3097 3097 MS2 23/56 Linfeng_20130204_CTCF_10.raw High FSSSGGGGGGGRFSSSSGYGGGSSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 91 2.63 0.00 1 0 50 3 733.65417 2198.94797 1.50 24.16 1942 1942 MS2 24/96 Linfeng_20130201_rIgG_9.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 21 2.63 0.00 0 0 50 3 1075.10046 3223.28684 1.58 26.76 1712 1712 MS2 22/156 Linfeng_20130204_CTCF_9.raw Medium GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 8 2.61 0.00 0 0 50 4 1243.99084 4972.94155 0.98 20.44 936 936 MS2 45/390 Linfeng_20130204_CTCF_9.raw High FSSSGGGGGGGRFSSSSGYGGGSSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 85 2.61 0.00 1 0 50 3 733.65387 2198.94706 1.08 24.03 1911 1911 MS2 31/96 Linfeng_20130201_rIgG_1.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.61 0.00 0 0 50 3 1075.09973 3223.28464 0.90 31.41 2223 2223 MS2 27/156 Linfeng_20130204_CTCF_9.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 2.60 0.00 0 0 50 3 1075.09717 3223.27695 -1.49 28.08 2432 2432 MS2 27/156 Linfeng_20130201_rIgG_6.raw High FSSSGGGGGGGRFSSSSGYGGGSSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 81 2.60 0.00 1 0 50 3 733.65161 2198.94028 -2.00 24.37 1954 1954 MS2 26/96 Linfeng_20130201_rIgG_1.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 110 2.60 0.00 0 10 16 3 902.39069 2705.15750 -1.38 52.32 4977 4977 MS2 25/124 Linfeng_20130201_rIgG_4.raw High FSSSGGGGGGGRFSSSSGYGGGSSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 109 2.60 0.00 1 0 50 3 733.65485 2198.94999 2.41 25.13 2077 2077 MS2 25/96 Linfeng_20130201_rIgG_6.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 129 2.60 0.00 0 34 50 3 902.39203 2705.16153 0.10 59.73 5273 5273 MS2 26/124 Linfeng_20130204_CTCF_7.raw High TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 480 2.59 0.00 1 15 3 3 623.31207 1867.92167 -0.13 39.52 3438 3438 MS2 22/56 Linfeng_20130201_rIgG_5.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 28 2.59 0.00 0 0 50 3 597.91382 1791.72690 -0.50 18.33 653 653 MS2 24/88 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 2.59 0.00 0 31 50 3 1075.09790 3223.27915 -0.81 24.00 1889 1889 MS2 25/156 Linfeng_20130201_rIgG_2.raw High GSRGGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 50 2.59 0.00 1 0 50 3 697.96490 2091.88016 -1.08 20.30 1430 1430 MS2 22/100 Linfeng_20130201_rIgG_3.raw High IGLGGRGGSGGSYGR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 561 2.59 0.00 1 15 50 2 675.84796 1350.68865 0.95 24.24 1815 1815 MS2 16/28 Linfeng_20130201_rIgG_5.raw Medium LEKEIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 368 2.59 0.00 1 0 50 4 720.84540 2880.35976 2.17 45.66 4188 4188 MS2 34/150 Linfeng_20130201_rIgG_2.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.59 0.00 0 0 50 3 1075.09998 3223.28537 1.12 31.10 2193 2193 MS2 25/156 Linfeng_20130204_CTCF_9.raw Medium GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 8 2.58 0.00 0 4 50 4 1243.99109 4972.94253 1.18 23.04 1794 1794 MS2 43/390 Linfeng_20130201_rIgG_10.raw High FSSSSGYGGGSSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 92 2.58 0.00 0 28 50 2 618.26843 1235.52959 0.67 19.38 1321 1321 MS2 16/24 Linfeng_20130201_rIgG_7.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.58 0.00 0 0 50 3 1075.09827 3223.28025 -0.47 31.57 2323 2323 MS2 24/156 Linfeng_20130204_CTCF_2.raw High FSSSSGYGGGSSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 97 2.58 0.00 0 30 50 2 618.26825 1235.52922 0.37 19.91 1321 1321 MS2 16/24 Linfeng_20130201_rIgG_5.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.58 0.00 0 0 50 3 1075.10022 3223.28611 1.35 29.54 2027 2027 MS2 28/156 Linfeng_20130204_CTCF_7.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 404 2.58 0.00 0 22 50 2 616.80408 1232.60088 2.42 23.36 1155 1155 MS2 13/30 Linfeng_20130204_CTCF_3.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.58 0.00 0 57 50 3 1075.09973 3223.28464 0.90 23.05 1827 1827 MS2 26/156 Linfeng_20130201_rIgG_7.raw High TLLDIDNTR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 668 2.57 0.00 0 18 50 2 530.78467 1060.56206 -1.23 40.35 3648 3648 MS2 14/16 Linfeng_20130201_rIgG_10.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 122 2.57 0.00 0 18 50 3 902.39166 2705.16043 -0.30 59.09 5210 5210 MS2 21/124 Linfeng_20130204_CTCF_7.raw High IKFEmEQNLR Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 458 2.57 0.00 1 7 50 3 441.89471 1323.66959 -2.29 33.12 2918 2918 MS2 17/36 Linfeng_20130201_rIgG_10.raw High IKFEMEQNLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 530 2.57 0.00 1 4 30 3 436.56329 1307.67533 -1.82 37.89 2944 2944 MS2 17/36 Linfeng_20130204_CTCF_2.raw High VQALEEANNDLENKIQDWYDKK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 454 2.57 0.00 2 17 50 3 888.43848 2663.30088 2.26 51.87 4115 4115 MS2 20/84 Linfeng_20130204_CTCF_6.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 591 2.57 0.00 1 21 12 3 617.98071 1851.92759 0.32 48.92 4026 4026 MS2 22/56 Linfeng_20130204_CTCF_7.raw Medium GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.57 0.00 0 3 50 4 806.57623 3223.28310 0.42 25.73 2135 2135 MS2 37/234 Linfeng_20130201_rIgG_9.raw High TLLDIDNTR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 598 2.57 0.00 0 22 50 2 530.78510 1060.56291 -0.42 40.24 3635 3635 MS2 14/16 Linfeng_20130201_rIgG_3.raw Medium GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 9 2.57 0.00 0 4 50 4 1243.98816 4972.93081 -1.18 20.14 1416 1416 MS2 46/390 Linfeng_20130201_rIgG_6.raw High TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 479 2.57 0.00 1 8 9 3 623.31207 1867.92167 -0.13 40.17 3053 3053 MS2 18/56 Linfeng_20130204_CTCF_10.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 2.56 0.00 0 64 50 3 1075.09802 3223.27951 -0.69 23.81 1868 1868 MS2 26/156 Linfeng_20130201_rIgG_2.raw Medium LEKEIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 370 2.56 0.00 1 1 15 4 720.84564 2880.36074 2.51 46.12 3517 3517 MS2 34/150 Linfeng_20130204_CTCF_6.raw Medium GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 9 2.56 0.00 0 80 50 4 1243.98877 4972.93325 -0.68 26.30 2193 2193 MS2 46/390 Linfeng_20130201_rIgG_9.raw High FSSSSGYGGGSSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 98 2.56 0.00 0 31 50 2 618.26788 1235.52849 -0.22 19.00 1245 1245 MS2 15/24 Linfeng_20130201_rIgG_1.raw Medium GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.55 0.00 0 0 50 4 806.57581 3223.28139 -0.11 25.98 1625 1625 MS2 36/234 Linfeng_20130204_CTCF_9.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.55 0.00 0 0 50 3 1075.10107 3223.28867 2.15 30.75 2143 2143 MS2 27/156 Linfeng_20130204_CTCF_7.raw High STMQELNSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 304 2.55 0.00 0 11 50 2 533.25275 1065.49822 -1.09 23.01 1166 1166 MS2 13/16 Linfeng_20130204_CTCF_6.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 207 2.55 0.00 0 4 47 3 837.38281 2510.13388 0.80 46.50 3556 3556 MS2 26/88 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.55 0.00 0 13 50 3 1075.10034 3223.28647 1.46 59.83 5283 5283 MS2 23/156 Linfeng_20130204_CTCF_7.raw High FSSSSGYGGGSSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 98 2.55 0.00 0 19 50 2 618.26953 1235.53179 2.45 19.33 846 846 MS2 14/24 Linfeng_20130204_CTCF_2.raw High TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 493 2.54 0.00 1 19 9 3 623.31433 1867.92844 3.49 45.91 3495 3495 MS2 20/56 Linfeng_20130204_CTCF_6.raw High FSSSSGYGGGSSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 90 2.54 0.00 0 36 50 2 618.26807 1235.52886 0.08 18.92 1232 1232 MS2 15/24 Linfeng_20130201_rIgG_2.raw High GSRGGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 66 2.54 0.00 1 7 50 3 697.96899 2091.89243 4.78 16.90 450 450 MS2 25/100 Linfeng_20130204_CTCF_3.raw High QGVDADINGLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 408 2.54 0.00 0 19 50 2 579.30035 1157.59343 2.11 35.72 2413 2413 MS2 12/20 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.54 0.00 0 0 50 3 1075.10010 3223.28574 1.24 30.55 2124 2124 MS2 25/156 Linfeng_20130204_CTCF_7.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 541 2.54 0.00 1 17 50 2 926.46594 1851.92461 -1.29 58.37 4892 4892 MS2 16/28 Linfeng_20130204_CTCF_6.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.53 0.00 0 0 50 3 1075.10303 3223.29453 3.96 30.26 2109 2109 MS2 24/156 Linfeng_20130204_CTCF_9.raw Medium NHKEEmSQLTGQNSGDVNVEINVAPGK Unambiguous 1 1 P35527 M6(Oxidation) CID 1.0000 0.0000 1 1 432 2.53 0.00 1 3 50 4 728.60150 2911.38418 -0.34 33.45 2505 2505 MS2 29/156 Linfeng_20130204_CTCF_2.raw High KGPAAIQK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 164 2.53 0.00 1 0 50 2 406.75217 812.49706 -2.28 15.90 827 827 MS2 12/14 Linfeng_20130201_rIgG_10.raw High IKFEMEQNLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 499 2.52 0.00 1 4 50 3 436.56436 1307.67853 0.63 38.31 2887 2887 MS2 16/36 Linfeng_20130204_CTCF_7.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 16 2.51 0.00 0 12 50 3 1075.09497 3223.27036 -3.53 24.59 1998 1998 MS2 25/156 Linfeng_20130201_rIgG_9.raw Medium GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 8 2.51 0.00 0 0 50 4 1243.99854 4972.97231 7.17 32.04 2268 2268 MS2 42/390 Linfeng_20130204_CTCF_7.raw High TLLDIDNTR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 600 2.51 0.00 0 26 50 2 530.78503 1060.56279 -0.54 38.57 3461 3461 MS2 14/16 Linfeng_20130201_rIgG_3.raw High IKFEmEQNLR Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 461 2.51 0.00 1 36 50 3 441.89493 1323.67023 -1.80 33.03 2901 2901 MS2 18/36 Linfeng_20130201_rIgG_2.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.51 0.00 0 0 50 3 1075.10046 3223.28684 1.58 60.00 5299 5299 MS2 26/156 Linfeng_20130204_CTCF_7.raw High GSRGGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 62 2.50 0.00 1 0 50 3 697.96606 2091.88364 0.58 16.78 484 484 MS2 27/100 Linfeng_20130204_CTCF_7.raw Medium GGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 9 2.50 0.00 0 0 50 4 1243.98535 4972.91958 -3.43 25.30 2076 2076 MS2 49/390 Linfeng_20130201_rIgG_10.raw High FSSSGGGGGGGRFSSSSGYGGGSSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 84 2.50 0.00 1 58 50 3 733.65369 2198.94651 0.83 24.22 1980 1980 MS2 29/96 Linfeng_20130201_rIgG_7.raw Medium GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.50 0.00 0 8 50 3 1075.09961 3223.28427 0.78 29.92 2073 2073 MS2 24/156 Linfeng_20130204_CTCF_9.raw Medium TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 475 2.49 0.00 1 12 30 3 623.31177 1867.92075 -0.62 39.59 3120 3120 MS2 17/56 Linfeng_20130204_CTCF_2.raw High FSSSSGYGGGSSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 95 2.48 0.00 0 30 50 2 618.26837 1235.52947 0.57 20.04 1381 1381 MS2 15/24 Linfeng_20130201_rIgG_1.raw Medium SSYSRFSSSGGGGGGGR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 141 2.48 0.00 1 22 50 3 521.56940 1562.69364 -0.42 19.97 1386 1386 MS2 22/64 Linfeng_20130201_rIgG_3.raw Medium GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.47 0.00 0 0 50 3 1075.10107 3223.28867 2.15 28.74 1866 1866 MS2 25/156 Linfeng_20130204_CTCF_10.raw Medium TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 565 2.47 0.00 1 13 17 3 617.97974 1851.92466 -1.27 58.34 4889 4889 MS2 22/56 Linfeng_20130204_CTCF_6.raw High QVLDNLTMEK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 535 2.46 0.00 0 10 33 2 595.80786 1190.60845 -0.14 37.49 3353 3353 MS2 14/18 Linfeng_20130201_rIgG_10.raw Medium TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 563 2.46 0.00 1 7 4 3 617.97961 1851.92429 -1.46 49.58 4188 4188 MS2 22/56 Linfeng_20130204_CTCF_2.raw High FSSSSGYGGGSSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 79 2.46 0.00 0 24 50 2 618.26709 1235.52690 -1.50 19.87 1366 1366 MS2 18/24 Linfeng_20130201_rIgG_8.raw High QGVDADINGLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 407 2.45 0.00 0 14 50 2 579.29974 1157.59221 1.05 33.91 2988 2988 MS2 15/20 Linfeng_20130201_rIgG_2.raw High STMQELNSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 271 2.44 0.00 0 17 50 2 533.25323 1065.49919 -0.18 22.42 1694 1694 MS2 12/16 Linfeng_20130201_rIgG_2.raw High IKFEMEQNLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 463 2.44 0.00 1 19 31 2 654.34210 1307.67693 -0.59 38.73 2901 2901 MS2 13/18 Linfeng_20130204_CTCF_10.raw Medium IKFEMEQNLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 500 2.44 0.00 1 0 2 3 436.56454 1307.67908 1.05 38.97 2747 2747 MS2 18/36 Linfeng_20130204_CTCF_6.raw High STMQELNSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 266 2.44 0.00 0 10 50 2 533.25354 1065.49980 0.40 22.68 1757 1757 MS2 13/16 Linfeng_20130201_rIgG_3.raw High FSSSGGGGGGGR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 152 2.43 0.00 0 0 50 2 491.72034 982.43340 -0.37 15.85 379 379 MS2 16/22 Linfeng_20130204_CTCF_1.raw High QGVDADINGLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 398 2.43 0.00 0 31 50 2 579.29816 1157.58904 -1.69 34.27 3029 3029 MS2 14/20 Linfeng_20130201_rIgG_3.raw Medium DIENQYETQITQIEHEVSSSGQEVQSSAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 363 2.43 0.00 0 0 50 3 1088.84351 3264.51596 0.61 53.66 4298 4298 MS2 20/112 Linfeng_20130204_CTCF_6.raw Medium GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 157 2.43 0.00 0 7 50 3 902.39575 2705.17270 4.23 60.23 5322 5322 MS2 25/124 Linfeng_20130204_CTCF_7.raw High FSSSSGYGGGSSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 95 2.42 0.00 0 25 50 2 618.26831 1235.52934 0.47 19.46 1323 1323 MS2 17/24 Linfeng_20130201_rIgG_6.raw Medium GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 2.42 0.00 0 0 50 3 1075.09717 3223.27695 -1.49 22.13 1676 1676 MS2 24/156 Linfeng_20130201_rIgG_10.raw High STMQELNSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 271 2.41 0.00 0 11 50 2 533.25311 1065.49895 -0.41 23.04 1293 1293 MS2 13/16 Linfeng_20130204_CTCF_7.raw High STMQELNSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 286 2.41 0.00 0 0 50 2 533.25366 1065.50005 0.63 22.85 1313 1313 MS2 12/16 Linfeng_20130204_CTCF_2.raw High TLLDIDNTR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 617 2.40 0.00 0 13 50 2 530.78534 1060.56340 0.04 39.97 3629 3629 MS2 15/16 Linfeng_20130201_rIgG_1.raw High STMQELNSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 252 2.39 0.00 0 10 50 2 533.24963 1065.49199 -6.94 23.82 1887 1887 MS2 12/16 Linfeng_20130201_rIgG_10.raw Medium FSSSGGGGGGGRFSSSSGYGGGSSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 77 2.39 0.00 1 0 50 3 733.65198 2198.94138 -1.50 25.10 2024 2024 MS2 23/96 Linfeng_20130201_rIgG_4.raw Medium IKFEmEQNLR Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 455 2.39 0.00 1 10 50 3 441.89478 1323.66977 -2.15 33.71 2530 2530 MS2 16/36 Linfeng_20130204_CTCF_2.raw Medium GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.38 0.00 0 0 50 3 1075.09924 3223.28318 0.44 24.31 1423 1423 MS2 22/156 Linfeng_20130204_CTCF_9.raw High STMQELNSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 252 2.38 0.00 0 36 50 2 533.25049 1065.49370 -5.33 23.78 1447 1447 MS2 13/16 Linfeng_20130204_CTCF_1.raw Medium TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 472 2.38 0.00 1 11 23 3 623.31177 1867.92075 -0.62 39.65 3566 3566 MS2 21/56 Linfeng_20130201_rIgG_8.raw Medium GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.38 0.00 0 0 50 3 1075.10071 3223.28757 1.81 27.81 1829 1829 MS2 27/156 Linfeng_20130204_CTCF_8.raw Medium TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 492 2.38 0.00 1 15 15 3 623.31091 1867.91819 -2.00 39.81 3048 3048 MS2 18/56 Linfeng_20130204_CTCF_8.raw Medium FSSSGGGGGGGRFSSSSGYGGGSSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 83 2.37 0.00 1 0 50 3 733.65265 2198.94339 -0.59 24.16 1930 1930 MS2 21/96 Linfeng_20130201_rIgG_10.raw Medium IKFEmEQNLR Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 457 2.37 0.00 1 23 50 3 441.89490 1323.67014 -1.87 30.09 2403 2403 MS2 18/36 Linfeng_20130201_rIgG_5.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 357 2.37 0.00 0 13 50 2 616.80261 1232.59795 0.05 23.11 1346 1346 MS2 15/30 Linfeng_20130204_CTCF_2.raw Medium TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 476 2.37 0.00 1 26 50 3 623.31165 1867.92038 -0.82 39.38 3145 3145 MS2 16/56 Linfeng_20130204_CTCF_1.raw Medium GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 16 2.36 0.00 0 0 50 3 1075.09534 3223.27146 -3.19 59.51 5252 5252 MS2 21/156 Linfeng_20130204_CTCF_7.raw Medium SGGGGGGGLGSGGSIRSSYSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 417 2.36 0.00 1 2 50 3 604.95691 1812.85617 -1.24 25.22 2046 2046 MS2 25/80 Linfeng_20130201_rIgG_2.raw Medium TLNDMRQEYEQLIAK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 580 2.36 0.00 1 2 50 3 617.98059 1851.92722 0.12 52.26 4937 4937 MS2 20/56 Linfeng_20130201_rIgG_2.raw High IKFEMEQNLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 460 2.36 0.00 1 11 40 2 654.34229 1307.67729 -0.31 37.99 2955 2955 MS2 14/18 Linfeng_20130204_CTCF_2.raw Medium SSYSRFSSSGGGGGGGR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 138 2.36 0.00 1 41 50 3 521.56866 1562.69144 -1.82 20.18 1413 1413 MS2 19/64 Linfeng_20130201_rIgG_9.raw High FSSSGGGGGGGR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 164 2.35 0.00 0 7 50 2 491.72012 982.43297 -0.81 15.92 827 827 MS2 14/22 Linfeng_20130201_rIgG_5.raw Medium IKFEMEQNLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 491 2.35 0.00 1 7 50 3 436.56430 1307.67835 0.49 38.00 2643 2643 MS2 17/36 Linfeng_20130204_CTCF_6.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 30 2.35 0.00 0 0 50 2 896.36792 1791.72856 0.43 18.12 683 683 MS2 16/44 Linfeng_20130204_CTCF_2.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 35 2.35 0.00 0 9 50 2 896.37085 1791.73442 3.70 18.33 606 606 MS2 18/44 Linfeng_20130204_CTCF_3.raw Medium GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 139 2.34 0.00 0 24 50 3 902.39410 2705.16776 2.41 60.48 5103 5103 MS2 25/124 Linfeng_20130204_CTCF_6.raw Medium GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 16 2.34 0.00 0 0 50 3 1075.09546 3223.27182 -3.08 29.50 2031 2031 MS2 25/156 Linfeng_20130204_CTCF_9.raw Medium GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 27 2.34 0.00 0 0 50 3 597.91412 1791.72782 0.01 18.70 731 731 MS2 24/88 Linfeng_20130204_CTCF_8.raw Medium IKFEmEQNLR Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 501 2.34 0.00 1 1 39 3 441.89655 1323.67508 1.86 34.12 2252 2252 MS2 22/36 Linfeng_20130204_CTCF_6.raw High QGVDADINGLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 408 2.34 0.00 0 33 50 2 579.29810 1157.58891 -1.79 33.86 3003 3003 MS2 14/20 Linfeng_20130201_rIgG_1.raw High TLLDIDNTR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 592 2.34 0.00 0 49 50 2 530.78558 1060.56389 0.50 38.17 3436 3436 MS2 15/16 Linfeng_20130201_rIgG_1.raw High QGVDADINGLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 405 2.34 0.00 0 26 50 2 579.29803 1157.58879 -1.90 34.40 3088 3088 MS2 14/20 Linfeng_20130201_rIgG_6.raw High TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 489 2.33 0.00 1 0 50 2 934.46680 1867.92632 2.36 39.54 3161 3161 MS2 18/28 Linfeng_20130204_CTCF_1.raw High QVLDNLTMEK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 588 2.33 0.00 0 19 50 2 595.80829 1190.60930 0.58 37.69 2631 2631 MS2 10/18 Linfeng_20130204_CTCF_3.raw High STMQELNSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 239 2.33 0.00 0 15 50 2 533.25140 1065.49553 -3.61 24.07 1414 1414 MS2 11/16 Linfeng_20130204_CTCF_7.raw Medium SSYSRFSSSGGGGGGGR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 141 2.33 0.00 1 25 50 3 521.56952 1562.69400 -0.18 19.71 1335 1335 MS2 24/64 Linfeng_20130201_rIgG_2.raw Medium GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.33 0.00 0 7 50 3 1075.10217 3223.29197 3.17 30.67 2150 2150 MS2 21/156 Linfeng_20130204_CTCF_9.raw Medium GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 2.33 0.00 0 100 50 3 1075.09778 3223.27878 -0.92 24.93 2030 2030 MS2 20/156 Linfeng_20130201_rIgG_3.raw Medium IKFEMEQNLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 511 2.32 0.00 1 7 50 3 436.56464 1307.67936 1.26 39.27 3537 3537 MS2 18/36 Linfeng_20130201_rIgG_10.raw High QGVDADINGLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 381 2.32 0.00 0 9 50 2 579.29974 1157.59221 1.05 34.12 3017 3017 MS2 15/20 Linfeng_20130201_rIgG_10.raw High STMQELNSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 275 2.32 0.00 0 13 50 2 533.25336 1065.49944 0.05 24.09 1465 1465 MS2 12/16 Linfeng_20130204_CTCF_2.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 36 2.32 0.00 0 0 50 2 896.37122 1791.73516 4.10 64.85 5590 5590 MS2 15/44 Linfeng_20130204_CTCF_6.raw Medium GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 141 2.32 0.00 0 5 50 3 902.39404 2705.16758 2.34 60.06 5305 5305 MS2 20/124 Linfeng_20130204_CTCF_7.raw High IKFEMEQNLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 465 2.31 0.00 1 10 16 2 654.34204 1307.67681 -0.69 38.09 3386 3386 MS2 13/18 Linfeng_20130201_rIgG_8.raw High IKFEMEQNLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 499 2.31 0.00 1 35 50 2 654.34180 1307.67632 -1.06 38.51 2934 2934 MS2 13/18 Linfeng_20130204_CTCF_9.raw Medium GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 2.31 0.00 0 0 50 3 1075.09668 3223.27549 -1.94 28.50 2020 2020 MS2 21/156 Linfeng_20130204_CTCF_1.raw Medium SGGGGGGGLGSGGSIRSSYSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 417 2.30 0.00 1 0 50 3 604.95740 1812.85764 -0.43 25.13 2036 2036 MS2 22/80 Linfeng_20130201_rIgG_2.raw High FSSSGGGGGGGR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 165 2.29 0.00 0 0 50 2 491.71967 982.43205 -1.74 15.91 833 833 MS2 14/22 Linfeng_20130201_rIgG_9.raw High QGVDADINGLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 430 2.28 0.00 0 34 50 2 579.29895 1157.59062 -0.32 35.51 3153 3153 MS2 14/20 Linfeng_20130201_rIgG_10.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 35 2.27 0.00 0 5 50 2 896.37000 1791.73271 2.74 63.78 5462 5462 MS2 15/44 Linfeng_20130204_CTCF_6.raw High FSSSSGYGGGSSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 98 2.27 0.00 0 29 50 2 618.26843 1235.52959 0.67 19.49 792 792 MS2 15/24 Linfeng_20130204_CTCF_6.raw Medium IKFEMEQNLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 507 2.27 0.00 1 7 50 3 436.56488 1307.68009 1.83 41.48 3020 3020 MS2 15/36 Linfeng_20130204_CTCF_6.raw Medium GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 22 2.27 0.00 0 0 50 3 1075.10083 3223.28794 1.92 30.18 1882 1882 MS2 25/156 Linfeng_20130204_CTCF_3.raw Medium TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 486 2.26 0.00 1 43 50 3 623.31219 1867.92203 0.06 39.77 2843 2843 MS2 19/56 Linfeng_20130204_CTCF_3.raw Medium IKFEmEQNLR Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 451 2.26 0.00 1 19 50 3 441.89459 1323.66922 -2.56 33.76 3075 3075 MS2 14/36 Linfeng_20130201_rIgG_7.raw Medium IKFEMEQNLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 556 2.26 0.00 1 35 50 3 436.56573 1307.68265 3.79 41.06 2976 2976 MS2 16/36 Linfeng_20130204_CTCF_6.raw Medium TLNDmRQEYEQLIAK Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 486 2.26 0.00 1 17 16 3 623.31226 1867.92221 0.16 40.82 2948 2948 MS2 15/56 Linfeng_20130204_CTCF_6.raw Medium GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 20 2.26 0.00 0 0 50 3 1075.09631 3223.27439 -2.28 32.07 2074 2074 MS2 24/156 Linfeng_20130204_CTCF_3.raw Medium IKFEmEQNLR Unambiguous 1 1 P35527 M5(Oxidation) CID 1.0000 0.0000 1 1 460 2.26 0.00 1 34 50 3 441.89499 1323.67041 -1.66 29.85 2587 2587 MS2 19/36 Linfeng_20130201_rIgG_2.raw Medium SSYSRFSSSGGGGGGGR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 134 2.26 0.00 1 15 50 3 521.56927 1562.69327 -0.65 20.09 1373 1373 MS2 24/64 Linfeng_20130201_rIgG_4.raw High LASYLDK Unambiguous 10 5 P13645;P02533;P08779;Q04695;P35527 CID 1.0000 0.0000 1 1 292 2.25 0.00 0 17 50 2 405.22327 809.43926 -1.38 27.99 1648 1648 MS2 11/12 Linfeng_20130204_CTCF_6.raw High TLLDIDNTR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 602 2.25 0.00 0 43 50 2 530.78558 1060.56389 0.50 38.92 2741 2741 MS2 14/16 Linfeng_20130204_CTCF_6.raw High IKFEMEQNLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 475 2.24 0.00 1 5 11 2 654.34271 1307.67815 0.34 39.07 2758 2758 MS2 14/18 Linfeng_20130204_CTCF_6.raw High SGGGGGGGLGSGGSIR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 324 2.23 0.00 0 31 50 2 616.80322 1232.59917 1.04 24.90 1350 1350 MS2 11/30 Linfeng_20130204_CTCF_6.raw High GGSGGSYGRGSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 232 2.22 0.00 1 8 50 2 549.25769 1097.50810 -0.19 15.45 785 785 MS2 12/22 Linfeng_20130201_rIgG_6.raw High TLLDIDNTR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 617 2.22 0.00 0 31 50 2 530.78558 1060.56389 0.50 39.08 3515 3515 MS2 14/16 Linfeng_20130201_rIgG_3.raw High STMQELNSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 285 2.21 0.00 0 29 50 2 533.25403 1065.50078 1.31 22.73 1309 1309 MS2 11/16 Linfeng_20130204_CTCF_1.raw High QGVDADINGLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 405 2.19 0.00 0 23 50 2 579.29871 1157.59014 -0.74 34.52 2530 2530 MS2 12/20 Linfeng_20130204_CTCF_9.raw High STMQELNSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 303 2.18 0.00 0 22 50 2 533.25433 1065.50139 1.89 23.11 1128 1128 MS2 14/16 Linfeng_20130204_CTCF_3.raw High QVLDNLTMEK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 463 2.17 0.00 0 28 50 2 595.80743 1190.60759 -0.86 38.00 2855 2855 MS2 10/18 Linfeng_20130204_CTCF_7.raw High QVLDNLTMEK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 537 2.16 0.00 0 18 50 2 595.80774 1190.60820 -0.34 37.55 3368 3368 MS2 13/18 Linfeng_20130201_rIgG_9.raw High QVLDNLTMEK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 567 2.16 0.00 0 6 34 2 595.80804 1190.60881 0.17 37.53 3355 3355 MS2 13/18 Linfeng_20130201_rIgG_3.raw High IKFEMEQNLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 459 2.16 0.00 1 57 50 2 654.34314 1307.67900 1.00 37.68 2969 2969 MS2 14/18 Linfeng_20130204_CTCF_1.raw High IKFEMEQNLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 481 2.16 0.00 1 62 50 2 654.34198 1307.67668 -0.78 37.99 3498 3498 MS2 14/18 Linfeng_20130201_rIgG_7.raw High LASYLDK Unambiguous 10 5 P13645;P02533;P08779;Q04695;P35527 CID 1.0000 0.0000 1 1 277 2.15 0.00 0 1 50 2 405.22366 809.44005 -0.40 28.44 2014 2014 MS2 11/12 Linfeng_20130204_CTCF_1.raw High TLLDIDNTR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 620 2.15 0.00 0 31 50 2 530.78528 1060.56328 -0.08 40.06 3215 3215 MS2 13/16 Linfeng_20130204_CTCF_1.raw High IKFEMEQNLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 466 2.15 0.00 1 22 25 2 654.34271 1307.67815 0.34 38.25 3472 3472 MS2 14/18 Linfeng_20130201_rIgG_6.raw High QVLDNLTMEK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 563 2.14 0.00 0 31 44 2 595.80780 1190.60832 -0.24 37.69 3344 3344 MS2 12/18 Linfeng_20130201_rIgG_8.raw High STMQELNSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 277 2.14 0.00 0 0 50 2 533.25317 1065.49907 -0.29 22.91 1793 1793 MS2 11/16 Linfeng_20130201_rIgG_6.raw High IKFEMEQNLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 470 2.13 0.00 1 32 41 2 654.34015 1307.67302 -3.58 37.87 2989 2989 MS2 13/18 Linfeng_20130204_CTCF_1.raw High QVLDNLTMEK Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 548 2.13 0.00 0 15 50 2 595.80811 1190.60893 0.27 37.30 3325 3325 MS2 13/18 Linfeng_20130201_rIgG_2.raw High STMQELNSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 284 2.13 0.00 0 10 50 2 533.25378 1065.50029 0.85 22.68 1715 1715 MS2 14/16 Linfeng_20130201_rIgG_4.raw High STMQELNSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 279 2.13 0.00 0 0 50 2 533.25421 1065.50115 1.66 22.84 1800 1800 MS2 12/16 Linfeng_20130201_rIgG_7.raw High FSSSGGGGGGGR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 164 2.12 0.00 0 7 50 2 491.71991 982.43254 -1.24 15.93 844 844 MS2 15/22 Linfeng_20130201_rIgG_1.raw High MTLDDFR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 179 2.12 0.00 0 3 11 2 449.21100 897.41472 1.33 40.69 2934 2934 MS2 11/12 Linfeng_20130204_CTCF_6.raw High LASYLDK Unambiguous 10 5 P13645;P02533;P08779;Q04695;P35527 CID 1.0000 0.0000 1 1 287 2.12 0.00 0 0 50 2 405.22348 809.43968 -0.85 34.21 2623 2623 MS2 9/12 Linfeng_20130204_CTCF_1.raw High IKFEMEQNLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 478 2.08 0.00 1 83 50 2 654.34216 1307.67705 -0.50 37.86 3399 3399 MS2 13/18 Linfeng_20130201_rIgG_9.raw High STMQELNSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 243 2.07 0.00 0 0 50 2 533.25031 1065.49333 -5.68 23.77 1890 1890 MS2 12/16 Linfeng_20130201_rIgG_9.raw High IKFEMEQNLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 470 2.07 0.00 1 52 50 2 654.34430 1307.68132 2.77 37.84 3370 3370 MS2 13/18 Linfeng_20130201_rIgG_4.raw High IGLGGRGGSGGSYGR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 486 2.07 0.00 1 0 50 2 675.84552 1350.68376 -2.66 23.76 1861 1861 MS2 11/28 Linfeng_20130201_rIgG_2.raw High IKFEMEQNLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 476 2.07 0.00 1 37 50 2 654.34454 1307.68181 3.14 39.96 2855 2855 MS2 13/18 Linfeng_20130204_CTCF_6.raw High STMQELNSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 303 2.07 0.00 0 22 50 2 533.25397 1065.50066 1.20 22.48 1718 1718 MS2 14/16 Linfeng_20130201_rIgG_1.raw High STMQELNSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 253 2.04 0.00 0 0 50 2 533.25012 1065.49297 -6.02 23.99 1787 1787 MS2 13/16 Linfeng_20130201_rIgG_5.raw High STMQELNSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 284 2.04 0.00 0 10 50 2 533.25391 1065.50054 1.08 22.66 1756 1756 MS2 11/16 Linfeng_20130201_rIgG_9.raw High LASYLDK Unambiguous 10 5 P13645;P02533;P08779;Q04695;P35527 CID 1.0000 0.0000 1 1 282 2.03 0.00 0 0 50 2 405.22336 809.43944 -1.15 27.42 1890 1890 MS2 9/12 Linfeng_20130204_CTCF_1.raw High IKFEMEQNLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 497 2.03 0.00 1 23 44 2 654.34363 1307.67998 1.74 38.05 2649 2649 MS2 14/18 Linfeng_20130204_CTCF_6.raw High IKFEMEQNLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 459 2.02 0.00 1 55 50 2 654.34241 1307.67754 -0.13 38.33 2691 2691 MS2 13/18 Linfeng_20130204_CTCF_4.raw High STMQELNSR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 252 2.01 0.00 0 10 50 2 533.25104 1065.49480 -4.30 23.97 1929 1929 MS2 12/16 Linfeng_20130201_rIgG_6.raw High IGLGGRGGSGGSYGR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 472 2.01 0.00 1 0 50 2 675.84534 1350.68340 -2.93 24.25 1928 1928 MS2 13/28 Linfeng_20130201_rIgG_8.raw High IKFEMEQNLR Unambiguous 1 1 P35527 CID 1.0000 0.0000 1 1 472 2.01 0.00 1 12 47 2 654.34229 1307.67729 -0.31 37.35 3353 3353 MS2 13/18 Linfeng_20130201_rIgG_1.raw P04264 "Keratin, type II cytoskeletal 1 OS=Homo sapiens GN=KRT1 PE=1 SV=6 - [K2C1_HUMAN]" 66.93 1 44 48 1253 2846.19 66.61 45 832 1426.51 58.54 39 421 644 66.0 8.12 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 6.55 0.00 0 1 26 3 1104.77405 3312.30759 -0.19 26.40 2038 2038 MS2 40/152 Linfeng_20130201_rIgG_5.raw High SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 492 6.35 0.00 2 16 4 3 834.42249 2501.25290 0.40 40.44 3549 3549 MS2 36/84 Linfeng_20130201_rIgG_5.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 6.32 0.00 0 0 50 3 1104.77527 3312.31125 0.91 26.36 2192 2192 MS2 39/152 Linfeng_20130201_rIgG_3.raw High SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 494 6.19 0.00 2 11 50 3 834.42291 2501.25418 0.91 40.42 3654 3654 MS2 37/84 Linfeng_20130201_rIgG_3.raw High SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 491 5.95 0.00 2 3 27 3 834.42261 2501.25327 0.54 40.49 3663 3663 MS2 35/84 Linfeng_20130201_rIgG_10.raw High SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 500 5.94 0.00 2 1 33 3 834.42334 2501.25547 1.42 40.67 3774 3774 MS2 37/84 Linfeng_20130201_rIgG_7.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 5.84 0.00 0 3 50 3 795.32263 2383.95334 0.58 23.34 1199 1199 MS2 34/120 Linfeng_20130204_CTCF_6.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 5.83 0.00 0 0 50 3 795.32196 2383.95133 -0.27 24.08 1798 1798 MS2 37/120 Linfeng_20130201_rIgG_5.raw High SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 483 5.81 0.00 2 7 50 3 834.42090 2501.24814 -1.51 40.59 3679 3679 MS2 39/84 Linfeng_20130201_rIgG_9.raw High SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 494 5.81 0.00 2 3 50 3 834.42303 2501.25455 1.06 40.23 3625 3625 MS2 37/84 Linfeng_20130201_rIgG_2.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 5.70 0.00 0 0 50 3 1104.77429 3312.30832 0.03 26.91 2089 2089 MS2 40/152 Linfeng_20130201_rIgG_5.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 5.59 0.00 0 1 33 3 1104.77551 3312.31198 1.13 26.09 2192 2192 MS2 36/152 Linfeng_20130201_rIgG_6.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 5.56 0.00 0 1 12 3 1104.77393 3312.30722 -0.30 25.99 2161 2161 MS2 37/152 Linfeng_20130201_rIgG_9.raw High SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 509 5.53 0.00 2 4 50 3 834.42389 2501.25711 2.08 40.73 2938 2938 MS2 28/84 Linfeng_20130204_CTCF_6.raw High SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 495 5.44 0.00 2 2 11 3 834.42316 2501.25492 1.20 40.63 3664 3664 MS2 37/84 Linfeng_20130201_rIgG_4.raw High SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 483 5.43 0.00 2 11 50 3 834.42212 2501.25180 -0.04 40.22 3656 3656 MS2 38/84 Linfeng_20130201_rIgG_1.raw High FSScGGGGGSFGAGGGFGSR Unambiguous 1 1 P04264 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 59 5.43 0.00 0 0 50 2 883.37274 1765.73821 1.92 36.73 2534 2534 MS2 25/38 Linfeng_20130204_CTCF_3.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 5.40 0.00 0 0 50 3 1104.77600 3312.31345 1.58 29.42 2337 2337 MS2 38/152 Linfeng_20130201_rIgG_5.raw High FSScGGGGGSFGAGGGFGSR Unambiguous 1 1 P04264 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 51 5.38 0.00 0 5 49 2 883.37140 1765.73552 0.40 35.17 3134 3134 MS2 30/38 Linfeng_20130201_rIgG_1.raw High FSScGGGGGSFGAGGGFGSR Unambiguous 1 1 P04264 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 60 5.35 0.00 0 0 50 2 883.37274 1765.73821 1.92 36.80 2537 2537 MS2 28/38 Linfeng_20130204_CTCF_4.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 18 5.35 0.00 0 0 50 3 795.32294 2383.95426 0.96 23.89 1899 1899 MS2 33/120 Linfeng_20130201_rIgG_3.raw High FSScGGGGGSFGAGGGFGSR Unambiguous 1 1 P04264 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 49 5.34 0.00 0 6 50 2 883.36993 1765.73259 -1.26 35.48 3149 3149 MS2 27/38 Linfeng_20130201_rIgG_3.raw High SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 509 5.32 0.00 2 5 33 3 834.42554 2501.26206 4.06 40.74 3150 3150 MS2 28/84 Linfeng_20130204_CTCF_8.raw High SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 492 5.29 0.00 2 2 23 3 834.42255 2501.25309 0.47 40.71 3726 3726 MS2 38/84 Linfeng_20130201_rIgG_6.raw High SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 510 5.28 0.00 2 0 50 3 834.42383 2501.25693 2.01 41.30 3736 3736 MS2 36/84 Linfeng_20130201_rIgG_2.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 5.27 0.00 0 0 14 3 1104.77368 3312.30649 -0.53 26.03 2154 2154 MS2 36/152 Linfeng_20130201_rIgG_10.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 18 5.26 0.00 0 0 50 2 1192.48230 2383.95732 2.24 51.13 4040 4040 MS2 26/60 Linfeng_20130204_CTCF_6.raw High FSScGGGGGSFGAGGGFGSR Unambiguous 1 1 P04264 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 49 5.20 0.00 0 0 39 2 883.37109 1765.73491 0.05 36.60 3246 3246 MS2 26/38 Linfeng_20130201_rIgG_4.raw High FSScGGGGGSFGAGGGFGSR Unambiguous 1 1 P04264 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 48 5.20 0.00 0 0 26 2 883.37122 1765.73516 0.19 36.55 3256 3256 MS2 29/38 Linfeng_20130201_rIgG_3.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 5.19 0.00 0 0 26 3 1104.77344 3312.30576 -0.75 26.19 2182 2182 MS2 38/152 Linfeng_20130201_rIgG_9.raw High SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 484 5.18 0.00 2 1 35 3 834.42206 2501.25162 -0.12 40.82 2950 2950 MS2 32/84 Linfeng_20130204_CTCF_3.raw High FSScGGGGGSFGAGGGFGSR Unambiguous 1 1 P04264 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 62 5.18 0.00 0 23 50 2 883.37427 1765.74126 3.65 51.60 4904 4904 MS2 27/38 Linfeng_20130201_rIgG_4.raw High SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 487 5.18 0.00 2 8 15 3 834.42188 2501.25107 -0.34 40.68 3685 3685 MS2 33/84 Linfeng_20130201_rIgG_8.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 13 5.17 0.00 0 0 37 2 1192.47998 2383.95268 0.30 24.21 1283 1283 MS2 28/60 Linfeng_20130204_CTCF_6.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 5.14 0.00 0 0 50 3 1104.77466 3312.30942 0.36 26.38 2202 2202 MS2 35/152 Linfeng_20130201_rIgG_9.raw High GGSGGGGGGSSGGRGSGGGSSGGSIGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 158 5.13 0.00 1 3 15 3 693.97620 2079.91404 -0.38 15.78 833 833 MS2 40/108 Linfeng_20130201_rIgG_2.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 5.13 0.00 0 0 50 3 1104.77454 3312.30906 0.25 26.70 2068 2068 MS2 39/152 Linfeng_20130201_rIgG_5.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 5.12 0.00 0 0 50 3 1104.77600 3312.31345 1.58 26.77 2269 2269 MS2 31/152 Linfeng_20130201_rIgG_6.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 18 5.11 0.00 0 0 50 2 1192.48340 2383.95952 3.17 26.40 1495 1495 MS2 27/60 Linfeng_20130204_CTCF_6.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 5.10 0.00 0 0 50 3 1104.77551 3312.31198 1.13 28.09 2396 2396 MS2 34/152 Linfeng_20130201_rIgG_3.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 5.10 0.00 0 0 50 3 1104.77258 3312.30320 -1.52 29.79 2373 2373 MS2 38/152 Linfeng_20130201_rIgG_5.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 5.10 0.00 0 0 50 3 795.32233 2383.95243 0.19 23.06 1693 1693 MS2 37/120 Linfeng_20130201_rIgG_5.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 5.10 0.00 0 1 50 3 1104.77405 3312.30759 -0.19 26.38 2193 2193 MS2 39/152 Linfeng_20130201_rIgG_10.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 5.10 0.00 0 0 13 3 1104.77490 3312.31015 0.58 25.93 1991 1991 MS2 35/152 Linfeng_20130201_rIgG_5.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 5.10 0.00 0 0 50 3 1104.77563 3312.31235 1.24 30.32 2425 2425 MS2 38/152 Linfeng_20130201_rIgG_5.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 5.09 0.00 0 1 50 3 1104.77515 3312.31089 0.80 26.02 1629 1629 MS2 32/152 Linfeng_20130204_CTCF_8.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 5.09 0.00 0 3 50 3 1104.77417 3312.30796 -0.08 25.80 2130 2130 MS2 33/152 Linfeng_20130201_rIgG_3.raw High FSScGGGGGSFGAGGGFGSR Unambiguous 1 1 P04264 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 49 5.07 0.00 0 4 50 2 883.37134 1765.73540 0.33 35.11 3106 3106 MS2 29/38 Linfeng_20130201_rIgG_2.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 15 5.07 0.00 0 0 50 2 1192.48120 2383.95513 1.32 23.25 1854 1854 MS2 25/60 Linfeng_20130201_rIgG_7.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 16 5.06 0.00 0 5 50 3 795.32129 2383.94931 -1.11 51.55 4083 4083 MS2 35/120 Linfeng_20130204_CTCF_6.raw High SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 501 5.06 0.00 2 4 50 3 834.42377 2501.25675 1.93 40.90 2956 2956 MS2 31/84 Linfeng_20130204_CTCF_4.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 5.05 0.00 0 0 50 3 1104.77454 3312.30906 0.25 27.02 2264 2264 MS2 36/152 Linfeng_20130201_rIgG_3.raw High SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 496 5.05 0.00 2 8 50 3 834.42603 2501.26352 4.64 40.89 3153 3153 MS2 25/84 Linfeng_20130204_CTCF_7.raw High MSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 217 5.04 0.00 0 0 50 3 855.72675 2565.16568 -0.48 34.04 2270 2270 MS2 27/100 Linfeng_20130204_CTCF_3.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 5.03 0.00 0 0 50 3 795.32281 2383.95389 0.81 35.63 2404 2404 MS2 25/120 Linfeng_20130204_CTCF_6.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 5.01 0.00 0 0 18 3 1104.77393 3312.30722 -0.30 26.07 2141 2141 MS2 37/152 Linfeng_20130201_rIgG_8.raw High SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 509 5.01 0.00 2 4 25 3 834.42389 2501.25711 2.08 41.12 3154 3154 MS2 32/84 Linfeng_20130204_CTCF_10.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 5.00 0.00 0 1 44 3 795.32257 2383.95316 0.50 25.40 1399 1399 MS2 37/120 Linfeng_20130204_CTCF_6.raw High FSScGGGGGSFGAGGGFGSR Unambiguous 1 1 P04264 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 48 5.00 0.00 0 0 46 2 883.37048 1765.73369 -0.64 36.51 3255 3255 MS2 30/38 Linfeng_20130201_rIgG_10.raw High FSScGGGGGSFGAGGGFGSR Unambiguous 1 1 P04264 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 46 5.00 0.00 0 0 50 2 883.37036 1765.73345 -0.78 35.58 3255 3255 MS2 29/38 Linfeng_20130201_rIgG_7.raw High FSScGGGGGSFGAGGGFGSR Unambiguous 1 1 P04264 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 47 5.00 0.00 0 15 50 2 883.37079 1765.73430 -0.29 35.47 3149 3149 MS2 28/38 Linfeng_20130201_rIgG_10.raw High FSScGGGGGSFGAGGGFGSR Unambiguous 1 1 P04264 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 57 4.98 0.00 0 0 50 2 883.37207 1765.73686 1.16 36.65 3312 3312 MS2 26/38 Linfeng_20130201_rIgG_6.raw High FSScGGGGGSFGAGGGFGSR Unambiguous 1 1 P04264 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 47 4.98 0.00 0 0 50 2 883.37067 1765.73406 -0.43 35.51 3136 3136 MS2 27/38 Linfeng_20130201_rIgG_4.raw High SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 495 4.98 0.00 2 3 50 3 834.42291 2501.25418 0.91 41.64 3332 3332 MS2 36/84 Linfeng_20130204_CTCF_2.raw High FSScGGGGGSFGAGGGFGSR Unambiguous 1 1 P04264 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 46 4.97 0.00 0 16 50 2 883.37024 1765.73320 -0.91 35.51 2707 2707 MS2 26/38 Linfeng_20130204_CTCF_2.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 4.95 0.00 0 0 50 3 1104.77380 3312.30686 -0.41 26.30 2166 2166 MS2 38/152 Linfeng_20130201_rIgG_4.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 4.93 0.00 0 1 50 3 1104.77527 3312.31125 0.91 27.06 2105 2105 MS2 39/152 Linfeng_20130201_rIgG_5.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 375 4.93 0.00 0 0 50 2 829.40259 1657.79790 2.99 38.62 3450 3450 MS2 22/32 Linfeng_20130201_rIgG_4.raw High AEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 393 4.93 0.00 1 0 50 2 1143.56799 2286.12871 1.66 43.40 3511 3511 MS2 24/38 Linfeng_20130204_CTCF_2.raw High FSScGGGGGSFGAGGGFGSR Unambiguous 1 1 P04264 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 45 4.93 0.00 0 0 21 2 883.37061 1765.73393 -0.50 36.26 3243 3243 MS2 30/38 Linfeng_20130201_rIgG_1.raw High FSScGGGGGSFGAGGGFGSR Unambiguous 1 1 P04264 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 52 4.92 0.00 0 16 50 2 883.36884 1765.73039 -2.50 36.61 3275 3275 MS2 28/38 Linfeng_20130201_rIgG_9.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 14 4.92 0.00 0 62 50 3 795.31976 2383.94474 -3.03 22.77 1755 1755 MS2 32/120 Linfeng_20130201_rIgG_1.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 4.91 0.00 0 1 36 3 1104.77417 3312.30796 -0.08 26.17 2168 2168 MS2 40/152 Linfeng_20130201_rIgG_10.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 18 4.90 0.00 0 3 50 3 795.32288 2383.95407 0.88 23.78 1883 1883 MS2 33/120 Linfeng_20130201_rIgG_1.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 4.90 0.00 0 0 26 3 795.32269 2383.95353 0.65 24.37 1298 1298 MS2 33/120 Linfeng_20130204_CTCF_6.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 358 4.87 0.00 0 0 32 2 829.40149 1657.79570 1.67 38.34 3454 3454 MS2 22/32 Linfeng_20130201_rIgG_1.raw High FSScGGGGGSFGAGGGFGSR Unambiguous 1 1 P04264 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 47 4.87 0.00 0 7 40 2 883.37115 1765.73503 0.12 36.73 3243 3243 MS2 27/38 Linfeng_20130201_rIgG_8.raw High FSScGGGGGSFGAGGGFGSR Unambiguous 1 1 P04264 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 45 4.87 0.00 0 0 50 2 883.37079 1765.73430 -0.29 36.46 2847 2847 MS2 25/38 Linfeng_20130204_CTCF_1.raw High FSScGGGGGSFGAGGGFGSR Unambiguous 1 1 P04264 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 48 4.86 0.00 0 0 50 2 883.37115 1765.73503 0.12 36.58 2814 2814 MS2 23/38 Linfeng_20130204_CTCF_2.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 12 4.86 0.00 0 0 50 2 1192.47729 2383.94731 -1.95 23.13 1178 1178 MS2 23/60 Linfeng_20130204_CTCF_6.raw High FSScGGGGGSFGAGGGFGSR Unambiguous 1 1 P04264 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 47 4.85 0.00 0 19 50 2 883.36938 1765.73149 -1.88 35.66 3179 3179 MS2 26/38 Linfeng_20130201_rIgG_9.raw High FSScGGGGGSFGAGGGFGSR Unambiguous 1 1 P04264 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 51 4.85 0.00 0 14 50 2 883.37134 1765.73540 0.33 35.68 3135 3135 MS2 27/38 Linfeng_20130201_rIgG_8.raw High AEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 486 4.84 0.00 1 6 16 3 762.71350 2286.12595 0.45 43.06 3927 3927 MS2 33/76 Linfeng_20130201_rIgG_3.raw High AEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 413 4.83 0.00 1 0 35 2 1143.56763 2286.12798 1.34 43.41 3223 3223 MS2 27/38 Linfeng_20130204_CTCF_6.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 4.81 0.00 0 0 50 3 1104.77454 3312.30906 0.25 26.80 2249 2249 MS2 29/152 Linfeng_20130201_rIgG_9.raw High FSScGGGGGSFGAGGGFGSR Unambiguous 1 1 P04264 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 50 4.81 0.00 0 4 50 2 883.37122 1765.73516 0.19 35.61 2978 2978 MS2 28/38 Linfeng_20130201_rIgG_5.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 4.80 0.00 0 1 41 3 1104.77551 3312.31198 1.13 26.41 1593 1593 MS2 33/152 Linfeng_20130204_CTCF_10.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 4.80 0.00 0 0 37 3 1104.77502 3312.31052 0.69 26.22 2206 2206 MS2 37/152 Linfeng_20130201_rIgG_6.raw High FSScGGGGGSFGAGGGFGSR Unambiguous 1 1 P04264 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 47 4.79 0.00 0 0 50 2 883.37109 1765.73491 0.05 36.20 3215 3215 MS2 29/38 Linfeng_20130201_rIgG_2.raw High FSScGGGGGSFGAGGGFGSR Unambiguous 1 1 P04264 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 44 4.79 0.00 0 2 50 2 883.37061 1765.73393 -0.50 36.70 3367 3367 MS2 28/38 Linfeng_20130201_rIgG_7.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 4.79 0.00 0 0 50 3 1104.77454 3312.30906 0.25 26.16 2149 2149 MS2 35/152 Linfeng_20130201_rIgG_4.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 18 4.78 0.00 0 4 50 3 795.32288 2383.95407 0.88 23.81 1895 1895 MS2 35/120 Linfeng_20130201_rIgG_9.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 355 4.78 0.00 0 0 30 2 829.40033 1657.79338 0.27 38.38 3435 3435 MS2 23/32 Linfeng_20130201_rIgG_2.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 15 4.77 0.00 0 0 50 2 1192.48010 2383.95293 0.40 24.98 1893 1893 MS2 25/60 Linfeng_20130201_rIgG_5.raw High GSGGGSSGGSIGGRGSSSGGVK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 372 4.77 0.00 1 0 50 2 876.41699 1751.82671 -0.05 16.19 874 874 MS2 21/42 Linfeng_20130201_rIgG_1.raw High AEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 477 4.75 0.00 1 13 36 3 762.71393 2286.12723 1.01 43.23 4039 4039 MS2 30/76 Linfeng_20130201_rIgG_7.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 4.74 0.00 0 5 50 3 795.32214 2383.95188 -0.04 23.20 1185 1185 MS2 36/120 Linfeng_20130204_CTCF_6.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 4.74 0.00 0 1 50 3 1104.77356 3312.30613 -0.64 26.27 2180 2180 MS2 36/152 Linfeng_20130201_rIgG_10.raw High SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 498 4.73 0.00 2 3 16 3 834.42328 2501.25528 1.35 41.71 3045 3045 MS2 28/84 Linfeng_20130204_CTCF_6.raw High FSScGGGGGSFGAGGGFGSR Unambiguous 1 1 P04264 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 53 4.72 0.00 0 9 50 2 883.37189 1765.73650 0.95 35.76 3222 3222 MS2 29/38 Linfeng_20130201_rIgG_6.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 4.72 0.00 0 0 14 3 1104.77576 3312.31272 1.35 26.21 1649 1649 MS2 36/152 Linfeng_20130204_CTCF_9.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 4.72 0.00 0 3 50 3 795.32275 2383.95371 0.73 32.21 2059 2059 MS2 30/120 Linfeng_20130204_CTCF_6.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 4.71 0.00 0 71 50 3 795.32269 2383.95353 0.65 23.86 1863 1863 MS2 33/120 Linfeng_20130201_rIgG_4.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 4.70 0.00 0 0 50 3 1104.77454 3312.30906 0.25 26.23 2158 2158 MS2 37/152 Linfeng_20130201_rIgG_4.raw High FSScGGGGGSFGAGGGFGSR Unambiguous 1 1 P04264 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 54 4.70 0.00 0 0 50 2 883.37164 1765.73601 0.68 37.14 2738 2738 MS2 24/38 Linfeng_20130204_CTCF_10.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 4.70 0.00 0 0 23 3 1104.77856 3312.32114 3.90 26.25 1464 1464 MS2 30/152 Linfeng_20130204_CTCF_3.raw High FSScGGGGGSFGAGGGFGSR Unambiguous 1 1 P04264 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 52 4.70 0.00 0 7 50 2 883.37177 1765.73625 0.81 36.42 3067 3067 MS2 29/38 Linfeng_20130201_rIgG_5.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 360 4.69 0.00 0 0 23 2 829.40002 1657.79277 -0.10 38.75 3490 3490 MS2 22/32 Linfeng_20130201_rIgG_9.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 4.68 0.00 0 0 50 3 1104.77405 3312.30759 -0.19 26.30 2169 2169 MS2 36/152 Linfeng_20130201_rIgG_2.raw High MSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 233 4.68 0.00 0 0 50 3 855.72827 2565.17026 1.31 34.17 2476 2476 MS2 28/100 Linfeng_20130204_CTCF_7.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 27 4.66 0.00 0 11 50 3 795.32843 2383.97074 7.87 50.93 4020 4020 MS2 35/120 Linfeng_20130204_CTCF_6.raw High FSScGGGGGSFGAGGGFGSR Unambiguous 1 1 P04264 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 57 4.66 0.00 0 0 50 2 883.37146 1765.73564 0.47 37.54 3372 3372 MS2 26/38 Linfeng_20130201_rIgG_1.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 14 4.66 0.00 0 0 50 2 1192.48120 2383.95513 1.32 27.38 1590 1590 MS2 27/60 Linfeng_20130204_CTCF_6.raw High FSScGGGGGSFGAGGGFGSR Unambiguous 1 1 P04264 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 53 4.65 0.00 0 23 50 2 883.37183 1765.73638 0.88 35.96 2652 2652 MS2 25/38 Linfeng_20130204_CTCF_7.raw High SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 495 4.64 0.00 2 10 50 3 834.42493 2501.26023 3.32 42.51 3129 3129 MS2 27/84 Linfeng_20130204_CTCF_6.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 18 4.64 0.00 0 0 50 2 1192.48254 2383.95781 2.45 58.79 4936 4936 MS2 25/60 Linfeng_20130204_CTCF_6.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 4.64 0.00 0 0 50 3 1104.77380 3312.30686 -0.41 26.85 2245 2245 MS2 37/152 Linfeng_20130201_rIgG_3.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 14 4.62 0.00 0 0 50 2 1192.48145 2383.95561 1.53 22.91 1785 1785 MS2 26/60 Linfeng_20130201_rIgG_3.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 13 4.60 0.00 0 0 50 2 1192.48083 2383.95439 1.02 29.49 1793 1793 MS2 29/60 Linfeng_20130204_CTCF_6.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 4.60 0.00 0 0 50 2 1192.48352 2383.95976 3.27 23.59 1179 1179 MS2 24/60 Linfeng_20130204_CTCF_3.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 347 4.59 0.00 0 0 43 2 829.39954 1657.79180 -0.69 39.05 2989 2989 MS2 23/32 Linfeng_20130204_CTCF_9.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 372 4.58 0.00 0 0 5 2 829.40234 1657.79741 2.70 38.87 2736 2736 MS2 23/32 Linfeng_20130204_CTCF_6.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 566 4.58 0.00 0 1 4 2 738.39624 1475.78520 -0.08 35.02 2703 2703 MS2 20/22 Linfeng_20130204_CTCF_1.raw High AEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 476 4.57 0.00 1 6 11 3 762.71259 2286.12320 -0.75 42.93 3947 3947 MS2 33/76 Linfeng_20130201_rIgG_1.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 357 4.57 0.00 0 0 50 2 829.39996 1657.79265 -0.18 38.90 2753 2753 MS2 23/32 Linfeng_20130204_CTCF_3.raw High MSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 221 4.57 0.00 0 0 50 3 855.72742 2565.16770 0.31 33.98 3046 3046 MS2 31/100 Linfeng_20130201_rIgG_6.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 15 4.56 0.00 0 0 50 2 1192.48096 2383.95464 1.12 30.53 1894 1894 MS2 27/60 Linfeng_20130204_CTCF_6.raw High GSGGGSSGGSIGGRGSSSGGVK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 392 4.55 0.00 1 0 50 2 876.41638 1751.82549 -0.75 16.22 864 864 MS2 22/42 Linfeng_20130201_rIgG_10.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 582 4.55 0.00 0 0 50 2 738.39642 1475.78557 0.17 34.01 2604 2604 MS2 20/22 Linfeng_20130204_CTCF_1.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 4.55 0.00 0 1 50 3 1104.77747 3312.31784 2.90 26.16 1455 1455 MS2 28/152 Linfeng_20130204_CTCF_3.raw High AEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 462 4.54 0.00 1 9 15 3 762.71271 2286.12357 -0.59 43.13 3938 3938 MS2 32/76 Linfeng_20130201_rIgG_10.raw High AEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 486 4.54 0.00 1 5 8 3 762.71356 2286.12613 0.53 43.01 3870 3870 MS2 32/76 Linfeng_20130201_rIgG_5.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 541 4.53 0.00 0 0 29 2 738.39801 1475.78874 2.32 35.37 2396 2396 MS2 20/22 Linfeng_20130204_CTCF_4.raw High FSScGGGGGSFGAGGGFGSR Unambiguous 1 1 P04264 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 45 4.52 0.00 0 13 50 2 883.37054 1765.73381 -0.57 51.67 4990 4990 MS2 25/38 Linfeng_20130201_rIgG_1.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 355 4.52 0.00 0 3 11 2 829.39996 1657.79265 -0.18 38.14 3261 3261 MS2 22/32 Linfeng_20130201_rIgG_5.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 576 4.51 0.00 0 0 13 2 738.39642 1475.78557 0.17 35.28 3175 3175 MS2 20/22 Linfeng_20130201_rIgG_6.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 4.51 0.00 0 0 50 3 1104.77710 3312.31675 2.57 25.44 2070 2070 MS2 31/152 Linfeng_20130201_rIgG_2.raw High SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 496 4.51 0.00 2 1 25 3 834.42303 2501.25455 1.06 40.55 3219 3219 MS2 29/84 Linfeng_20130204_CTCF_2.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 4.50 0.00 0 0 50 3 1104.77393 3312.30722 -0.30 26.76 2235 2235 MS2 35/152 Linfeng_20130201_rIgG_10.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 353 4.49 0.00 0 0 36 2 829.40033 1657.79338 0.27 38.75 3032 3032 MS2 23/32 Linfeng_20130204_CTCF_2.raw High MSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 217 4.48 0.00 0 3 50 3 855.72644 2565.16477 -0.83 33.75 2981 2981 MS2 30/100 Linfeng_20130201_rIgG_10.raw High GGSGGGGGGSSGGRGSGGGSSGGSIGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 158 4.48 0.00 1 21 50 3 693.97662 2079.91532 0.24 15.82 832 832 MS2 35/108 Linfeng_20130201_rIgG_1.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 4.47 0.00 0 0 50 3 1104.77612 3312.31382 1.69 26.64 2207 2207 MS2 44/152 Linfeng_20130201_rIgG_4.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 370 4.46 0.00 0 0 31 2 829.40063 1657.79399 0.63 38.61 3465 3465 MS2 22/32 Linfeng_20130201_rIgG_3.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 338 4.46 0.00 0 0 50 2 829.39899 1657.79070 -1.35 38.60 3465 3465 MS2 22/32 Linfeng_20130201_rIgG_10.raw High GGSGGGGGGSSGGRGSGGGSSGGSIGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 162 4.46 0.00 1 3 16 3 693.97675 2079.91568 0.41 15.83 811 811 MS2 37/108 Linfeng_20130201_rIgG_4.raw High mSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 M1(Oxidation); C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 172 4.45 0.00 0 2 50 3 861.05841 2581.16068 -0.44 32.16 2419 2419 MS2 31/100 Linfeng_20130204_CTCF_1.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 4.45 0.00 0 39 50 3 795.32269 2383.95353 0.65 28.95 2291 2291 MS2 32/120 Linfeng_20130201_rIgG_5.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 21 4.45 0.00 0 0 50 3 795.32367 2383.95646 1.88 23.92 1900 1900 MS2 37/120 Linfeng_20130201_rIgG_1.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 4.44 0.00 0 0 50 3 1104.77405 3312.30759 -0.19 31.48 2540 2540 MS2 34/152 Linfeng_20130201_rIgG_5.raw High MSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 217 4.43 0.00 0 0 50 3 855.72675 2565.16568 -0.48 34.34 2454 2454 MS2 27/100 Linfeng_20130204_CTCF_10.raw High GSGGGSSGGSIGGRGSSSGGVK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 374 4.43 0.00 1 15 50 2 876.41663 1751.82598 -0.47 16.13 869 869 MS2 26/42 Linfeng_20130201_rIgG_2.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 10 4.43 0.00 0 0 50 2 1192.47693 2383.94658 -2.26 24.48 1974 1974 MS2 21/60 Linfeng_20130201_rIgG_3.raw High mSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 M1(Oxidation); C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 172 4.42 0.00 0 1 50 3 861.05829 2581.16031 -0.58 32.42 2406 2406 MS2 30/100 Linfeng_20130204_CTCF_2.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 14 4.42 0.00 0 0 50 2 1192.47827 2383.94927 -1.13 25.47 1945 1945 MS2 25/60 Linfeng_20130201_rIgG_5.raw High AEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 486 4.42 0.00 1 12 50 3 762.71417 2286.12796 1.34 43.42 3214 3214 MS2 28/76 Linfeng_20130204_CTCF_4.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 541 4.42 0.00 0 0 20 2 738.39716 1475.78703 1.16 35.26 2389 2389 MS2 20/22 Linfeng_20130204_CTCF_3.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 546 4.42 0.00 0 11 50 2 738.39691 1475.78655 0.83 34.26 2266 2266 MS2 20/22 Linfeng_20130204_CTCF_6.raw High FSScGGGGGSFGAGGGFGSR Unambiguous 1 1 P04264 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 49 4.41 0.00 0 3 50 2 883.37085 1765.73442 -0.22 35.36 2737 2737 MS2 27/38 Linfeng_20130204_CTCF_1.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 543 4.40 0.00 0 1 9 2 738.39697 1475.78667 0.91 35.32 2373 2373 MS2 19/22 Linfeng_20130204_CTCF_6.raw High SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 486 4.40 0.00 2 7 50 3 834.42065 2501.24741 -1.80 41.72 3797 3797 MS2 30/84 Linfeng_20130201_rIgG_9.raw High KQISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 515 4.40 0.00 1 12 50 2 922.97656 1844.94585 -0.16 34.50 2652 2652 MS2 22/30 Linfeng_20130204_CTCF_1.raw High GGSGGGGGGSSGGRGSGGGSSGGSIGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 151 4.40 0.00 1 2 10 3 693.97650 2079.91495 0.06 15.81 835 835 MS2 36/108 Linfeng_20130201_rIgG_3.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 4.40 0.00 0 0 50 2 1192.48352 2383.95976 3.27 32.02 2040 2040 MS2 23/60 Linfeng_20130204_CTCF_6.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 4.39 0.00 0 0 50 3 795.32202 2383.95151 -0.19 25.04 1900 1900 MS2 36/120 Linfeng_20130201_rIgG_5.raw High QISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 442 4.39 0.00 0 5 50 3 572.95447 1716.84885 -1.36 39.70 3581 3581 MS2 31/56 Linfeng_20130201_rIgG_10.raw High FSScGGGGGSFGAGGGFGSR Unambiguous 1 1 P04264 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 51 4.39 0.00 0 14 50 2 883.37170 1765.73613 0.75 36.09 2632 2632 MS2 23/38 Linfeng_20130204_CTCF_10.raw High AEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 392 4.39 0.00 1 0 50 2 1143.56580 2286.12432 -0.26 43.42 3971 3971 MS2 24/38 Linfeng_20130201_rIgG_9.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 4.38 0.00 0 0 50 4 828.83307 3312.31045 0.67 25.95 1993 1993 MS2 50/228 Linfeng_20130201_rIgG_5.raw High MSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 217 4.38 0.00 0 0 19 3 855.72681 2565.16587 -0.40 33.95 2957 2957 MS2 33/100 Linfeng_20130201_rIgG_8.raw High MSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 221 4.38 0.00 0 0 50 3 855.72736 2565.16751 0.24 33.74 2576 2576 MS2 25/100 Linfeng_20130204_CTCF_1.raw High MSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 216 4.37 0.00 0 2 50 3 855.72705 2565.16660 -0.12 33.92 3091 3091 MS2 34/100 Linfeng_20130201_rIgG_7.raw High SLVNLGGSKSISISVAR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 176 4.36 0.00 1 10 8 3 563.32867 1687.97147 0.76 44.59 3352 3352 MS2 28/64 Linfeng_20130204_CTCF_6.raw High MSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 216 4.36 0.00 0 1 50 3 855.72705 2565.16660 -0.12 34.00 2559 2559 MS2 29/100 Linfeng_20130204_CTCF_2.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 4.35 0.00 0 7 50 3 795.32275 2383.95371 0.73 31.23 1963 1963 MS2 33/120 Linfeng_20130204_CTCF_6.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 350 4.35 0.00 0 0 1 2 829.40027 1657.79326 0.19 39.16 3393 3393 MS2 22/32 Linfeng_20130201_rIgG_5.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 4.34 0.00 0 0 50 3 1104.77563 3312.31235 1.24 35.14 2355 2355 MS2 28/152 Linfeng_20130204_CTCF_6.raw High mSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 M1(Oxidation); C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 177 4.34 0.00 0 0 50 3 861.05811 2581.15976 -0.80 32.97 2896 2896 MS2 31/100 Linfeng_20130201_rIgG_2.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 593 4.33 0.00 0 0 12 2 738.39655 1475.78581 0.33 34.88 3083 3083 MS2 20/22 Linfeng_20130201_rIgG_2.raw High mSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 M1(Oxidation); C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 172 4.33 0.00 0 0 50 3 861.05847 2581.16086 -0.37 32.22 2830 2830 MS2 33/100 Linfeng_20130201_rIgG_10.raw High MSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 217 4.33 0.00 0 3 40 3 855.72675 2565.16568 -0.48 33.87 2972 2972 MS2 33/100 Linfeng_20130201_rIgG_4.raw High AEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 465 4.32 0.00 1 5 27 3 762.71283 2286.12394 -0.43 43.07 3919 3919 MS2 31/76 Linfeng_20130201_rIgG_4.raw High FSScGGGGGSFGAGGGFGSR Unambiguous 1 1 P04264 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 67 4.32 0.00 0 6 50 2 883.37274 1765.73821 1.92 36.84 2739 2739 MS2 27/38 Linfeng_20130204_CTCF_7.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 4.32 0.00 0 0 50 3 1104.77563 3312.31235 1.24 26.47 2276 2276 MS2 34/152 Linfeng_20130201_rIgG_7.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 4.32 0.00 0 0 50 3 795.32263 2383.95334 0.58 23.84 1889 1889 MS2 34/120 Linfeng_20130201_rIgG_10.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 16 4.31 0.00 0 64 50 2 1192.48083 2383.95439 1.02 22.67 1727 1727 MS2 27/60 Linfeng_20130201_rIgG_2.raw High MSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 216 4.31 0.00 0 1 20 3 855.72705 2565.16660 -0.12 33.62 2979 2979 MS2 30/100 Linfeng_20130201_rIgG_1.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 18 4.31 0.00 0 0 50 3 795.32178 2383.95078 -0.50 24.91 2028 2028 MS2 30/120 Linfeng_20130201_rIgG_3.raw High FSScGGGGGSFGAGGGFGSR Unambiguous 1 1 P04264 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 58 4.31 0.00 0 33 50 2 883.37128 1765.73528 0.26 35.91 2670 2670 MS2 24/38 Linfeng_20130204_CTCF_9.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 368 4.30 0.00 0 0 27 2 829.40063 1657.79399 0.63 39.08 2965 2965 MS2 22/32 Linfeng_20130204_CTCF_7.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 4.30 0.00 0 34 50 3 795.32208 2383.95169 -0.12 37.81 2623 2623 MS2 26/120 Linfeng_20130204_CTCF_6.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 18 4.30 0.00 0 0 50 2 1192.48279 2383.95830 2.65 23.68 1366 1366 MS2 22/60 Linfeng_20130204_CTCF_7.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 4.30 0.00 0 0 50 3 795.32214 2383.95188 -0.04 23.63 1845 1845 MS2 29/120 Linfeng_20130201_rIgG_2.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 14 4.29 0.00 0 0 50 2 1192.48120 2383.95513 1.32 25.24 1384 1384 MS2 24/60 Linfeng_20130204_CTCF_6.raw High MSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 217 4.29 0.00 0 0 50 3 855.72681 2565.16587 -0.40 33.67 2965 2965 MS2 33/100 Linfeng_20130201_rIgG_2.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 584 4.29 0.00 0 0 32 2 738.39600 1475.78472 -0.41 34.74 3090 3090 MS2 20/22 Linfeng_20130201_rIgG_1.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 4.29 0.00 0 0 37 3 1104.77429 3312.30832 0.03 26.30 1659 1659 MS2 30/152 Linfeng_20130204_CTCF_9.raw High GGSGGGGGGSSGGRGSGGGSSGGSIGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 162 4.28 0.00 1 13 50 3 693.97687 2079.91605 0.59 15.80 826 826 MS2 33/108 Linfeng_20130201_rIgG_6.raw High MSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 244 4.27 0.00 0 4 33 3 855.72992 2565.17521 3.24 33.80 2780 2780 MS2 31/100 Linfeng_20130201_rIgG_5.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 4.27 0.00 0 7 50 3 1104.77319 3312.30503 -0.97 30.62 2454 2454 MS2 35/152 Linfeng_20130201_rIgG_5.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 4.26 0.00 0 2 50 3 1104.77527 3312.31125 0.91 30.72 1912 1912 MS2 32/152 Linfeng_20130204_CTCF_6.raw High GGSGGGGGGSSGGRGSGGGSSGGSIGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 152 4.26 0.00 1 15 50 3 693.97644 2079.91477 -0.03 15.77 805 805 MS2 33/108 Linfeng_20130201_rIgG_4.raw High GSGGGSSGGSIGGRGSSSGGVK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 396 4.26 0.00 1 0 50 2 876.41821 1751.82915 1.34 16.14 847 847 MS2 21/42 Linfeng_20130201_rIgG_4.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 4.26 0.00 0 0 50 3 795.32269 2383.95353 0.65 24.22 1909 1909 MS2 26/120 Linfeng_20130201_rIgG_4.raw High MSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 230 4.25 0.00 0 0 32 3 855.72754 2565.16806 0.45 33.90 2992 2992 MS2 31/100 Linfeng_20130201_rIgG_3.raw High SGYRSGGGFSSGSAGIINYQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 462 4.25 0.00 1 10 50 3 707.67450 2121.00895 -0.91 37.02 3315 3315 MS2 27/80 Linfeng_20130201_rIgG_9.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 351 4.25 0.00 0 5 50 2 829.40100 1657.79473 1.08 38.76 3575 3575 MS2 23/32 Linfeng_20130201_rIgG_7.raw High AEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 477 4.25 0.00 1 5 43 3 762.71307 2286.12467 -0.11 42.88 3898 3898 MS2 31/76 Linfeng_20130201_rIgG_2.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 545 4.24 0.00 0 3 50 2 738.39746 1475.78765 1.57 34.31 2490 2490 MS2 20/22 Linfeng_20130204_CTCF_7.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 550 4.24 0.00 0 0 4 2 738.39618 1475.78508 -0.16 35.12 3113 3113 MS2 20/22 Linfeng_20130201_rIgG_3.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 4.24 0.00 0 7 50 3 1104.77319 3312.30503 -0.97 30.22 2626 2626 MS2 38/152 Linfeng_20130201_rIgG_3.raw High GSGGGSSGGSIGGRGSSSGGVK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 358 4.24 0.00 1 0 50 2 876.41754 1751.82781 0.57 16.18 875 875 MS2 24/42 Linfeng_20130201_rIgG_3.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 14 4.24 0.00 0 0 50 2 1192.48035 2383.95342 0.61 26.35 2033 2033 MS2 24/60 Linfeng_20130201_rIgG_5.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 4.23 0.00 0 0 50 3 1104.77527 3312.31125 0.91 26.02 2152 2152 MS2 32/152 Linfeng_20130201_rIgG_1.raw High AEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 469 4.23 0.00 1 8 30 3 762.71289 2286.12412 -0.35 43.29 3990 3990 MS2 31/76 Linfeng_20130201_rIgG_6.raw High GSGGGSSGGSIGGRGSSSGGVK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 370 4.22 0.00 1 6 50 2 876.41669 1751.82610 -0.40 16.20 856 856 MS2 23/42 Linfeng_20130201_rIgG_5.raw High mSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 M1(Oxidation); C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 172 4.22 0.00 0 2 31 3 861.05853 2581.16104 -0.30 32.06 2825 2825 MS2 30/100 Linfeng_20130201_rIgG_1.raw High GSGGGSSGGSIGGRGSSSGGVK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 387 4.22 0.00 1 0 50 2 876.41608 1751.82488 -1.10 16.20 866 866 MS2 25/42 Linfeng_20130201_rIgG_8.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 588 4.21 0.00 0 2 25 2 738.39575 1475.78423 -0.74 35.12 3126 3126 MS2 20/22 Linfeng_20130201_rIgG_9.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 14 4.21 0.00 0 0 50 2 1192.47888 2383.95049 -0.62 23.19 1819 1819 MS2 21/60 Linfeng_20130201_rIgG_3.raw High KQISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 576 4.21 0.00 1 21 37 3 615.65302 1844.94449 -0.90 34.45 3047 3047 MS2 30/60 Linfeng_20130201_rIgG_3.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 13 4.20 0.00 0 0 50 2 1192.47864 2383.95000 -0.83 26.64 2062 2062 MS2 25/60 Linfeng_20130201_rIgG_5.raw High AEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 461 4.20 0.00 1 7 18 3 762.71271 2286.12357 -0.59 43.24 3953 3953 MS2 30/76 Linfeng_20130201_rIgG_9.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 4.20 0.00 0 0 50 3 1104.77380 3312.30686 -0.41 25.84 2131 2131 MS2 34/152 Linfeng_20130201_rIgG_1.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 11 4.19 0.00 0 66 50 2 1192.47424 2383.94121 -4.51 22.92 1678 1678 MS2 27/60 Linfeng_20130201_rIgG_5.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 550 4.19 0.00 0 4 50 2 738.39703 1475.78679 1.00 35.79 2602 2602 MS2 20/22 Linfeng_20130204_CTCF_10.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 551 4.19 0.00 0 0 26 2 738.39618 1475.78508 -0.16 35.22 3220 3220 MS2 20/22 Linfeng_20130201_rIgG_7.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 14 4.19 0.00 0 0 50 3 795.32043 2383.94675 -2.19 25.65 2114 2114 MS2 33/120 Linfeng_20130201_rIgG_3.raw High SLVNLGGSKSISISVAR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 182 4.18 0.00 1 9 9 3 563.32800 1687.96946 -0.44 44.20 4048 4048 MS2 30/64 Linfeng_20130201_rIgG_3.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 4.18 0.00 0 1 50 3 795.32227 2383.95224 0.11 27.68 1619 1619 MS2 35/120 Linfeng_20130204_CTCF_6.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 4.17 0.00 0 0 50 3 1104.77417 3312.30796 -0.08 28.08 2206 2206 MS2 39/152 Linfeng_20130201_rIgG_5.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 4.17 0.00 0 0 50 3 1104.77417 3312.30796 -0.08 26.71 2230 2230 MS2 33/152 Linfeng_20130201_rIgG_3.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 4.17 0.00 0 0 50 2 1192.48206 2383.95683 2.04 23.85 1900 1900 MS2 27/60 Linfeng_20130201_rIgG_9.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 4.17 0.00 0 2 50 3 1104.77734 3312.31748 2.79 51.10 4038 4038 MS2 31/152 Linfeng_20130204_CTCF_6.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 591 4.16 0.00 0 0 50 2 738.39587 1475.78447 -0.58 34.14 3113 3113 MS2 20/22 Linfeng_20130201_rIgG_7.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 542 4.16 0.00 0 2 45 2 738.39825 1475.78923 2.65 35.43 2601 2601 MS2 17/22 Linfeng_20130204_CTCF_7.raw High SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 497 4.15 0.00 2 4 32 3 834.42279 2501.25382 0.76 40.95 3186 3186 MS2 28/84 Linfeng_20130204_CTCF_9.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 4.14 0.00 0 0 50 2 1192.48181 2383.95635 1.84 31.55 1994 1994 MS2 24/60 Linfeng_20130204_CTCF_6.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 12 4.14 0.00 0 0 50 2 1192.47607 2383.94487 -2.98 24.10 1920 1920 MS2 24/60 Linfeng_20130201_rIgG_1.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 358 4.14 0.00 0 4 17 2 829.39996 1657.79265 -0.18 38.79 3464 3464 MS2 21/32 Linfeng_20130201_rIgG_8.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 547 4.14 0.00 0 0 12 2 738.39648 1475.78569 0.25 35.46 2624 2624 MS2 18/22 Linfeng_20130204_CTCF_9.raw High mSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 M1(Oxidation); C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 175 4.13 0.00 0 0 50 3 861.05792 2581.15921 -1.01 33.37 2939 2939 MS2 30/100 Linfeng_20130201_rIgG_3.raw High SLVNLGGSKSISISVAR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 150 4.12 0.00 1 0 28 2 844.48944 1687.97161 0.84 44.38 4060 4060 MS2 24/32 Linfeng_20130201_rIgG_4.raw High mSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 M1(Oxidation); C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 173 4.12 0.00 0 0 50 3 861.05835 2581.16050 -0.51 32.34 2852 2852 MS2 30/100 Linfeng_20130201_rIgG_9.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 597 4.12 0.00 0 1 49 2 738.39661 1475.78594 0.42 34.96 3100 3100 MS2 20/22 Linfeng_20130201_rIgG_10.raw High MSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 242 4.12 0.00 0 11 50 3 855.72961 2565.17429 2.88 33.88 2990 2990 MS2 33/100 Linfeng_20130201_rIgG_3.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 18 4.11 0.00 0 0 50 2 1192.48218 2383.95708 2.14 28.45 1693 1693 MS2 25/60 Linfeng_20130204_CTCF_6.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 13 4.11 0.00 0 0 50 2 1192.47961 2383.95195 -0.01 29.27 2322 2322 MS2 26/60 Linfeng_20130201_rIgG_5.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 4.11 0.00 0 4 50 3 1104.77893 3312.32224 4.23 40.24 2885 2885 MS2 30/152 Linfeng_20130204_CTCF_6.raw High mSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 M1(Oxidation); C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 189 4.10 0.00 0 3 50 3 861.05939 2581.16361 0.69 33.17 2935 2935 MS2 35/100 Linfeng_20130201_rIgG_1.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 4.10 0.00 0 0 50 3 1104.77893 3312.32224 4.23 35.95 2436 2436 MS2 27/152 Linfeng_20130204_CTCF_6.raw High SLVNLGGSKSISISVAR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 182 4.10 0.00 1 14 23 3 563.32813 1687.96982 -0.22 44.34 4157 4157 MS2 31/64 Linfeng_20130201_rIgG_7.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 363 4.10 0.00 0 0 50 2 829.40051 1657.79375 0.49 38.82 3531 3531 MS2 21/32 Linfeng_20130201_rIgG_6.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 4.10 0.00 0 9 50 3 795.32281 2383.95389 0.81 22.90 1676 1676 MS2 27/120 Linfeng_20130201_rIgG_5.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 4.10 0.00 0 0 50 3 1104.77429 3312.30832 0.03 26.93 2255 2255 MS2 28/152 Linfeng_20130201_rIgG_10.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 558 4.10 0.00 0 0 50 2 738.39612 1475.78496 -0.25 33.76 2974 2974 MS2 20/22 Linfeng_20130201_rIgG_2.raw High LNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 486 4.10 0.00 0 9 39 2 679.35168 1357.69609 0.18 43.89 3263 3263 MS2 20/22 Linfeng_20130204_CTCF_4.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 551 4.09 0.00 0 3 50 2 738.39679 1475.78630 0.66 34.08 2993 2993 MS2 20/22 Linfeng_20130201_rIgG_4.raw High mSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 M1(Oxidation); C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 186 4.09 0.00 0 5 50 3 861.05908 2581.16269 0.34 33.77 2994 2994 MS2 35/100 Linfeng_20130201_rIgG_1.raw High SLVNLGGSKSISISVAR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 196 4.09 0.00 1 39 50 3 563.32782 1687.96891 -0.76 44.24 4045 4045 MS2 28/64 Linfeng_20130201_rIgG_4.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 14 4.09 0.00 0 0 50 2 1192.47913 2383.95098 -0.42 23.98 1906 1906 MS2 22/60 Linfeng_20130201_rIgG_1.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 18 4.08 0.00 0 5 50 3 795.32330 2383.95536 1.42 24.07 1940 1940 MS2 31/120 Linfeng_20130201_rIgG_6.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 20 4.08 0.00 0 7 50 3 795.32458 2383.95920 3.03 34.85 2326 2326 MS2 30/120 Linfeng_20130204_CTCF_6.raw High SLVNLGGSKSISISVAR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 196 4.08 0.00 1 22 28 3 563.32770 1687.96854 -0.98 43.87 4050 4050 MS2 31/64 Linfeng_20130201_rIgG_1.raw High GGSGGGGGGSSGGRGSGGGSSGGSIGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 139 4.07 0.00 1 6 50 2 1040.46106 2079.91484 0.01 15.79 834 834 MS2 21/54 Linfeng_20130201_rIgG_2.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 15 4.07 0.00 0 0 50 2 1192.48035 2383.95342 0.61 23.97 1785 1785 MS2 27/60 Linfeng_20130201_rIgG_5.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 362 4.07 0.00 0 0 50 2 829.40057 1657.79387 0.56 38.54 3057 3057 MS2 21/32 Linfeng_20130204_CTCF_1.raw High LDSELKNmQDMVEDYR Unambiguous 1 1 P04264 M8(Oxidation) CID 1.0000 0.0000 1 1 181 4.06 0.00 1 0 50 2 1001.45184 2001.89641 3.54 36.80 2522 2522 MS2 21/30 Linfeng_20130204_CTCF_6.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 4.06 0.00 0 1 48 3 1104.77576 3312.31272 1.35 26.10 1638 1638 MS2 29/152 Linfeng_20130204_CTCF_9.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 13 4.06 0.00 0 57 50 2 1192.47852 2383.94975 -0.93 26.78 2238 2238 MS2 23/60 Linfeng_20130201_rIgG_3.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 586 4.05 0.00 0 9 50 2 738.39624 1475.78520 -0.08 34.38 2516 2516 MS2 19/22 Linfeng_20130204_CTCF_9.raw High NKLNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 470 4.05 0.00 1 12 34 2 800.42206 1599.83684 1.93 45.87 4268 4268 MS2 22/26 Linfeng_20130201_rIgG_6.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 4.05 0.00 0 4 50 3 1104.77917 3312.32297 4.45 32.64 2102 2102 MS2 27/152 Linfeng_20130204_CTCF_6.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 582 4.04 0.00 0 0 50 2 738.39655 1475.78581 0.33 34.18 3066 3066 MS2 20/22 Linfeng_20130201_rIgG_6.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 4.04 0.00 0 0 50 3 795.32214 2383.95188 -0.04 25.60 2108 2108 MS2 31/120 Linfeng_20130201_rIgG_3.raw High FSScGGGGGSFGAGGGFGSR Unambiguous 1 1 P04264 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 48 4.04 0.00 0 14 50 2 883.36957 1765.73186 -1.67 35.66 2428 2428 MS2 23/38 Linfeng_20130204_CTCF_3.raw High AEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 472 4.04 0.00 1 8 47 3 762.71301 2286.12448 -0.19 43.14 3485 3485 MS2 30/76 Linfeng_20130204_CTCF_2.raw High FSScGGGGGSFGAGGGFGSR Unambiguous 1 1 P04264 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 53 4.04 0.00 0 14 50 2 883.37201 1765.73674 1.09 35.75 2433 2433 MS2 22/38 Linfeng_20130204_CTCF_4.raw High SGYRSGGGFSSGSAGIINYQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 441 4.03 0.00 1 18 50 3 707.67493 2121.01023 -0.31 37.00 3303 3303 MS2 26/80 Linfeng_20130201_rIgG_10.raw High NKLNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 509 4.03 0.00 1 17 49 2 800.42084 1599.83440 0.40 45.44 4165 4165 MS2 22/26 Linfeng_20130201_rIgG_2.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 15 4.03 0.00 0 16 50 2 1192.48022 2383.95317 0.50 27.77 2175 2175 MS2 25/60 Linfeng_20130201_rIgG_5.raw High SLVNLGGSKSISISVAR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 180 4.03 0.00 1 24 26 3 563.32898 1687.97239 1.30 44.65 3548 3548 MS2 25/64 Linfeng_20130204_CTCF_7.raw High mSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 M1(Oxidation); C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 182 4.03 0.00 0 0 50 3 861.05878 2581.16178 -0.02 32.30 2793 2793 MS2 31/100 Linfeng_20130201_rIgG_8.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 350 4.02 0.00 0 0 50 2 829.40149 1657.79570 1.67 38.99 2758 2758 MS2 21/32 Linfeng_20130204_CTCF_4.raw High LDSELKNmQDMVEDYR Unambiguous 1 1 P04264 M8(Oxidation) CID 1.0000 0.0000 1 1 153 4.02 0.00 1 10 50 3 667.96704 2001.88657 -1.37 36.22 3239 3239 MS2 27/60 Linfeng_20130201_rIgG_1.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 551 4.02 0.00 0 0 14 2 738.39612 1475.78496 -0.25 35.17 3102 3102 MS2 19/22 Linfeng_20130201_rIgG_4.raw High AEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 501 4.01 0.00 1 8 18 3 762.71466 2286.12943 1.98 43.52 3427 3427 MS2 25/76 Linfeng_20130204_CTCF_7.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 575 4.01 0.00 0 2 50 2 738.39648 1475.78569 0.25 34.11 2570 2570 MS2 19/22 Linfeng_20130204_CTCF_2.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 4.01 0.00 0 0 50 3 795.32251 2383.95298 0.42 22.88 1781 1781 MS2 34/120 Linfeng_20130201_rIgG_3.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 20 4.01 0.00 0 0 50 3 795.32562 2383.96231 4.34 25.35 2060 2060 MS2 26/120 Linfeng_20130201_rIgG_2.raw High KQISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 570 4.00 0.00 1 22 31 3 615.65320 1844.94504 -0.60 34.51 3036 3036 MS2 29/60 Linfeng_20130201_rIgG_4.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 490 4.00 0.00 0 3 50 2 738.39819 1475.78911 2.57 35.09 3075 3075 MS2 18/22 Linfeng_20130201_rIgG_8.raw High AEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 462 4.00 0.00 1 28 50 3 762.71277 2286.12375 -0.51 43.47 3446 3446 MS2 24/76 Linfeng_20130204_CTCF_9.raw High LDSELKNMQDmVEDYR Unambiguous 1 1 P04264 M11(Oxidation) CID 1.0000 0.0000 1 1 174 3.99 0.00 1 0 50 2 1001.45282 2001.89836 4.52 43.63 3248 3248 MS2 20/30 Linfeng_20130204_CTCF_6.raw High LNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 534 3.99 0.00 0 20 50 2 679.35309 1357.69890 2.25 43.97 3474 3474 MS2 20/22 Linfeng_20130204_CTCF_7.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 14 3.99 0.00 0 0 50 3 795.32019 2383.94602 -2.50 24.35 1974 1974 MS2 29/120 Linfeng_20130201_rIgG_6.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 569 3.99 0.00 0 3 50 2 738.39581 1475.78435 -0.66 35.12 2669 2669 MS2 18/22 Linfeng_20130204_CTCF_2.raw High mSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 M1(Oxidation); C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 136 3.98 0.00 0 0 50 2 1291.08252 2581.15776 -1.57 32.32 2851 2851 MS2 22/50 Linfeng_20130201_rIgG_1.raw High SLVNLGGSKSISISVAR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 182 3.98 0.00 1 10 12 3 563.32813 1687.96982 -0.22 44.43 4111 4111 MS2 32/64 Linfeng_20130201_rIgG_6.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.97 0.00 0 0 50 3 1104.77515 3312.31089 0.80 26.69 2260 2260 MS2 37/152 Linfeng_20130201_rIgG_6.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 13 3.96 0.00 0 0 50 2 1192.47815 2383.94902 -1.24 23.67 1850 1850 MS2 27/60 Linfeng_20130201_rIgG_2.raw High NKLNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 492 3.96 0.00 1 13 37 2 800.42267 1599.83806 2.69 46.07 3701 3701 MS2 22/26 Linfeng_20130204_CTCF_7.raw High GGSGGGGGGSSGGRGSGGGSSGGSIGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 149 3.96 0.00 1 17 50 3 693.97552 2079.91202 -1.35 15.82 819 819 MS2 30/108 Linfeng_20130201_rIgG_10.raw High NKLNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 549 3.96 0.00 1 28 10 3 533.94849 1599.83091 -1.78 45.76 4223 4223 MS2 30/52 Linfeng_20130201_rIgG_10.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 595 3.95 0.00 0 3 50 2 738.39661 1475.78594 0.42 34.29 2992 2992 MS2 20/22 Linfeng_20130201_rIgG_8.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 13 3.95 0.00 0 24 50 2 1192.47925 2383.95122 -0.32 22.97 1794 1794 MS2 22/60 Linfeng_20130201_rIgG_9.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 12 3.95 0.00 0 0 50 2 1192.47498 2383.94267 -3.90 25.40 2087 2087 MS2 25/60 Linfeng_20130201_rIgG_3.raw High GGSGGGGGGSSGGRGSGGGSSGGSIGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 158 3.94 0.00 1 9 50 2 1040.46143 2079.91557 0.36 15.80 815 815 MS2 20/54 Linfeng_20130201_rIgG_5.raw High NKLNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 541 3.94 0.00 1 10 16 3 533.94928 1599.83329 -0.29 45.23 4204 4204 MS2 30/52 Linfeng_20130201_rIgG_1.raw High SLVNLGGSKSISISVAR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 173 3.94 0.00 1 30 31 3 563.32928 1687.97330 1.84 45.16 3594 3594 MS2 21/64 Linfeng_20130204_CTCF_10.raw High NKLNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 516 3.93 0.00 1 7 14 2 800.41956 1599.83183 -1.20 45.75 4222 4222 MS2 22/26 Linfeng_20130201_rIgG_10.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.93 0.00 0 1 50 3 1104.77588 3312.31308 1.46 25.99 1723 1723 MS2 30/152 Linfeng_20130204_CTCF_1.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 19 3.92 0.00 0 1 50 3 795.32355 2383.95609 1.73 26.60 1514 1514 MS2 32/120 Linfeng_20130204_CTCF_6.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 14 3.92 0.00 0 0 50 2 1192.47974 2383.95220 0.09 23.74 1868 1868 MS2 25/60 Linfeng_20130201_rIgG_8.raw High NKLNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 512 3.92 0.00 1 14 16 2 800.42102 1599.83476 0.63 45.70 4203 4203 MS2 22/26 Linfeng_20130201_rIgG_4.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 18 3.91 0.00 0 61 50 2 1192.48389 2383.96050 3.58 23.12 1773 1773 MS2 24/60 Linfeng_20130201_rIgG_4.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 554 3.91 0.00 0 0 50 2 738.39691 1475.78655 0.83 33.75 2992 2992 MS2 18/22 Linfeng_20130201_rIgG_1.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.91 0.00 0 3 50 3 1104.77527 3312.31125 0.91 30.49 1890 1890 MS2 30/152 Linfeng_20130204_CTCF_6.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 553 3.91 0.00 0 12 50 2 738.39728 1475.78728 1.33 34.35 2295 2295 MS2 20/22 Linfeng_20130204_CTCF_4.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.90 0.00 0 4 50 3 1104.77502 3312.31052 0.69 26.78 2314 2314 MS2 35/152 Linfeng_20130201_rIgG_7.raw High SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 485 3.90 0.00 2 5 27 4 626.06812 2501.25063 -0.51 40.40 3652 3652 MS2 39/126 Linfeng_20130201_rIgG_3.raw High QISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 406 3.90 0.00 0 0 48 2 858.92981 1716.85234 0.68 39.98 3086 3086 MS2 22/28 Linfeng_20130204_CTCF_9.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 19 3.90 0.00 0 0 50 2 1192.48401 2383.96074 3.68 23.64 1172 1172 MS2 25/60 Linfeng_20130204_CTCF_4.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 16 3.90 0.00 0 0 50 2 1192.48132 2383.95537 1.43 25.22 2066 2066 MS2 23/60 Linfeng_20130201_rIgG_3.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.89 0.00 0 0 50 3 1104.77649 3312.31491 2.02 25.88 2169 2169 MS2 37/152 Linfeng_20130201_rIgG_6.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 348 3.89 0.00 0 4 25 2 829.40088 1657.79448 0.93 38.92 2949 2949 MS2 22/32 Linfeng_20130204_CTCF_8.raw High LNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 551 3.89 0.00 0 8 38 2 679.35107 1357.69487 -0.72 43.66 3539 3539 MS2 20/22 Linfeng_20130204_CTCF_2.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.89 0.00 0 3 50 3 1104.77466 3312.30942 0.36 25.79 2106 2106 MS2 33/152 Linfeng_20130201_rIgG_4.raw High LNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 510 3.89 0.00 0 10 24 2 679.35089 1357.69451 -0.99 43.65 3992 3992 MS2 20/22 Linfeng_20130201_rIgG_10.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.89 0.00 0 0 50 3 1104.77417 3312.30796 -0.08 26.63 2253 2253 MS2 34/152 Linfeng_20130201_rIgG_6.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 18 3.89 0.00 0 14 50 3 795.32312 2383.95481 1.19 29.80 1824 1824 MS2 33/120 Linfeng_20130204_CTCF_6.raw High MSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 233 3.88 0.00 0 0 50 3 855.72809 2565.16971 1.09 34.11 2271 2271 MS2 26/100 Linfeng_20130204_CTCF_4.raw High LNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 526 3.88 0.00 0 5 28 2 679.35120 1357.69512 -0.54 43.43 3561 3561 MS2 20/22 Linfeng_20130204_CTCF_1.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 15 3.88 0.00 0 0 50 2 1192.47876 2383.95024 -0.73 24.06 1916 1916 MS2 22/60 Linfeng_20130201_rIgG_10.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.88 0.00 0 2 50 3 1104.77551 3312.31198 1.13 25.69 2118 2118 MS2 26/152 Linfeng_20130201_rIgG_3.raw High SLVNLGGSKSISISVAR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 137 3.88 0.00 1 11 50 2 844.48877 1687.97026 0.04 44.25 4053 4053 MS2 23/32 Linfeng_20130201_rIgG_3.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.88 0.00 0 0 50 3 1104.77307 3312.30466 -1.08 26.92 2237 2237 MS2 33/152 Linfeng_20130201_rIgG_8.raw High SLDLDSIIAEVK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 404 3.86 0.00 0 6 50 2 651.86560 1302.72392 6.70 50.85 4012 4012 MS2 19/22 Linfeng_20130204_CTCF_6.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 18 3.86 0.00 0 10 50 3 795.32288 2383.95407 0.88 24.28 1943 1943 MS2 31/120 Linfeng_20130201_rIgG_1.raw High SGYRSGGGFSSGSAGIINYQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 454 3.86 0.00 1 11 50 3 707.67487 2121.01004 -0.39 36.48 3243 3243 MS2 27/80 Linfeng_20130201_rIgG_2.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 580 3.86 0.00 0 0 50 2 738.39636 1475.78545 0.09 33.98 3004 3004 MS2 19/22 Linfeng_20130201_rIgG_10.raw High mSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 M1(Oxidation); C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 203 3.86 0.00 0 0 50 3 861.06073 2581.16764 2.25 32.24 2615 2615 MS2 33/100 Linfeng_20130201_rIgG_5.raw High SLVNLGGSKSISISVAR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 152 3.86 0.00 1 0 50 2 844.48822 1687.96916 -0.61 44.09 4023 4023 MS2 23/32 Linfeng_20130201_rIgG_2.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 548 3.86 0.00 0 6 50 2 738.39697 1475.78667 0.91 34.03 3005 3005 MS2 19/22 Linfeng_20130201_rIgG_3.raw High LDSELKNmQDmVEDYR Unambiguous 1 1 P04264 M8(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 152 3.85 0.00 1 2 29 3 673.30023 2017.88614 0.95 31.49 1988 1988 MS2 23/60 Linfeng_20130204_CTCF_6.raw High WELLQQVDTSTR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 467 3.85 0.00 0 15 3 2 738.38025 1475.75322 2.90 49.80 3903 3903 MS2 18/22 Linfeng_20130204_CTCF_6.raw High LNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 538 3.85 0.00 0 21 38 2 679.35065 1357.69402 -1.35 44.57 4129 4129 MS2 19/22 Linfeng_20130201_rIgG_1.raw High SGYRSGGGFSSGSAGIINYQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 445 3.85 0.00 1 19 50 3 707.67493 2121.01023 -0.31 37.06 3353 3353 MS2 27/80 Linfeng_20130201_rIgG_6.raw High NKLNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 445 3.85 0.00 1 7 25 2 800.42206 1599.83684 1.93 46.05 3510 3510 MS2 21/26 Linfeng_20130204_CTCF_6.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 343 3.84 0.00 0 0 50 2 829.40002 1657.79277 -0.10 39.15 2944 2944 MS2 22/32 Linfeng_20130204_CTCF_10.raw High NKLNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 552 3.84 0.00 1 17 35 3 533.94922 1599.83310 -0.41 45.45 4166 4166 MS2 28/52 Linfeng_20130201_rIgG_2.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 14 3.84 0.00 0 0 50 2 1192.47888 2383.95049 -0.62 27.72 2170 2170 MS2 24/60 Linfeng_20130201_rIgG_5.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.84 0.00 0 0 50 3 1104.77441 3312.30869 0.14 25.52 2078 2078 MS2 39/152 Linfeng_20130201_rIgG_2.raw High SGYRSGGGFSSGSAGIINYQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 499 3.84 0.00 1 24 50 3 707.67725 2121.01719 2.97 36.84 3271 3271 MS2 27/80 Linfeng_20130201_rIgG_4.raw High AEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 489 3.84 0.00 1 3 13 3 762.71429 2286.12833 1.50 43.29 3210 3210 MS2 26/76 Linfeng_20130204_CTCF_6.raw High GGSGGGGGGSSGGRGSGGGSSGGSIGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 152 3.83 0.00 1 0 50 2 1040.46057 2079.91387 -0.46 15.84 838 838 MS2 20/54 Linfeng_20130201_rIgG_3.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.83 0.00 0 0 50 3 1104.77686 3312.31601 2.35 33.61 2201 2201 MS2 27/152 Linfeng_20130204_CTCF_6.raw High NKLNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 547 3.83 0.00 1 9 10 3 533.94946 1599.83384 0.05 45.69 4202 4202 MS2 28/52 Linfeng_20130201_rIgG_4.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 554 3.83 0.00 0 2 50 2 738.39758 1475.78789 1.74 34.25 2290 2290 MS2 19/22 Linfeng_20130204_CTCF_3.raw High SLVNLGGSKSISISVAR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 174 3.83 0.00 1 15 31 3 563.32739 1687.96762 -1.52 44.39 4072 4072 MS2 28/64 Linfeng_20130201_rIgG_10.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.82 0.00 0 0 50 3 1104.77429 3312.30832 0.03 26.69 2237 2237 MS2 34/152 Linfeng_20130201_rIgG_9.raw High LDSELKNmQDmVEDYR Unambiguous 1 1 P04264 M8(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 116 3.82 0.00 1 0 50 2 1009.44659 2017.88591 0.83 31.62 2227 2227 MS2 17/30 Linfeng_20130204_CTCF_7.raw High NKLNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 506 3.82 0.00 1 11 36 2 800.42126 1599.83525 0.94 46.21 3741 3741 MS2 22/26 Linfeng_20130204_CTCF_9.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 10 3.82 0.00 0 0 50 3 1104.76880 3312.29184 -4.95 30.30 2634 2634 MS2 35/152 Linfeng_20130201_rIgG_3.raw High KQISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 584 3.81 0.00 1 26 50 3 615.65265 1844.94339 -1.49 34.73 3120 3120 MS2 24/60 Linfeng_20130201_rIgG_6.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 16 3.81 0.00 0 49 50 3 795.32135 2383.94950 -1.04 30.23 2417 2417 MS2 25/120 Linfeng_20130201_rIgG_5.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 14 3.81 0.00 0 0 50 2 1192.47937 2383.95146 -0.21 27.01 2100 2100 MS2 28/60 Linfeng_20130201_rIgG_5.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 3.80 0.00 0 0 50 2 1192.48267 2383.95806 2.55 23.53 1161 1161 MS2 21/60 Linfeng_20130204_CTCF_4.raw High SLVNLGGSKSISISVAR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 149 3.80 0.00 1 0 50 2 844.48962 1687.97197 1.05 44.51 4119 4119 MS2 23/32 Linfeng_20130201_rIgG_6.raw High mSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 M1(Oxidation); C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 177 3.80 0.00 0 1 50 3 861.05731 2581.15738 -1.72 33.18 2904 2904 MS2 32/100 Linfeng_20130201_rIgG_4.raw High KQISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 513 3.80 0.00 1 31 50 2 922.97675 1844.94621 0.03 34.13 3030 3030 MS2 24/30 Linfeng_20130201_rIgG_1.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 579 3.79 0.00 0 0 50 2 738.39526 1475.78325 -1.40 34.10 3025 3025 MS2 19/22 Linfeng_20130201_rIgG_9.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 592 3.79 0.00 0 8 50 2 738.39661 1475.78594 0.42 34.73 2494 2494 MS2 19/22 Linfeng_20130204_CTCF_10.raw High mSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 M1(Oxidation); C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 171 3.79 0.00 0 0 50 3 861.05847 2581.16086 -0.37 32.41 2892 2892 MS2 32/100 Linfeng_20130201_rIgG_6.raw High KQISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 499 3.79 0.00 1 13 50 2 922.97736 1844.94744 0.70 34.55 3060 3060 MS2 24/30 Linfeng_20130201_rIgG_10.raw High GGSGGGGGGSSGGRGSGGGSSGGSIGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 157 3.79 0.00 1 25 50 3 693.97607 2079.91367 -0.55 15.77 815 815 MS2 29/108 Linfeng_20130201_rIgG_8.raw High NKLNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 509 3.78 0.00 1 27 7 2 800.42090 1599.83452 0.48 45.29 4212 4212 MS2 21/26 Linfeng_20130201_rIgG_1.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.78 0.00 0 2 50 3 1104.77478 3312.30979 0.47 26.52 2219 2219 MS2 33/152 Linfeng_20130201_rIgG_9.raw High GSGGGSSGGSIGGRGSSSGGVK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 395 3.78 0.00 1 0 50 2 876.41846 1751.82964 1.62 16.24 881 881 MS2 21/42 Linfeng_20130201_rIgG_6.raw High LNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 532 3.78 0.00 0 21 24 2 679.35260 1357.69792 1.53 44.07 3533 3533 MS2 18/22 Linfeng_20130204_CTCF_8.raw High LLRDYQELMNTK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 456 3.77 0.00 1 20 39 2 762.40143 1523.79558 4.51 40.99 2969 2969 MS2 17/22 Linfeng_20130204_CTCF_6.raw High LDSELKNmQDMVEDYR Unambiguous 1 1 P04264 M8(Oxidation) CID 1.0000 0.0000 1 1 167 3.77 0.00 1 1 40 3 667.96783 2001.88895 -0.18 36.40 3243 3243 MS2 26/60 Linfeng_20130201_rIgG_10.raw High QISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 396 3.77 0.00 0 0 50 2 858.92926 1716.85124 0.04 39.78 3596 3596 MS2 21/28 Linfeng_20130201_rIgG_9.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 21 3.77 0.00 0 10 50 3 795.32373 2383.95664 1.96 25.44 2088 2088 MS2 29/120 Linfeng_20130201_rIgG_1.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.76 0.00 0 0 50 3 1104.77478 3312.30979 0.47 26.59 2202 2202 MS2 38/152 Linfeng_20130201_rIgG_2.raw High KQISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 575 3.76 0.00 1 38 50 3 615.65356 1844.94614 -0.01 34.09 3006 3006 MS2 30/60 Linfeng_20130201_rIgG_2.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 12 3.75 0.00 0 0 50 2 1192.47791 2383.94853 -1.44 23.94 1882 1882 MS2 25/60 Linfeng_20130201_rIgG_2.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 3.75 0.00 0 60 50 2 1192.48315 2383.95903 2.96 22.81 1760 1760 MS2 19/60 Linfeng_20130201_rIgG_1.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 18 3.75 0.00 0 10 50 3 795.32294 2383.95426 0.96 25.76 1974 1974 MS2 27/120 Linfeng_20130201_rIgG_5.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 3.75 0.00 0 7 50 3 795.32245 2383.95279 0.34 26.85 2083 2083 MS2 27/120 Linfeng_20130201_rIgG_5.raw High LDSELKNmQDmVEDYR Unambiguous 1 1 P04264 M8(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 136 3.75 0.00 1 0 50 3 673.29919 2017.88303 -0.60 30.89 2709 2709 MS2 31/60 Linfeng_20130201_rIgG_1.raw High MSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 197 3.75 0.00 0 6 50 3 855.72034 2565.14646 -7.97 32.53 2841 2841 MS2 25/100 Linfeng_20130201_rIgG_4.raw High QISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 447 3.74 0.00 0 0 48 2 858.93066 1716.85405 1.67 39.95 2862 2862 MS2 20/28 Linfeng_20130204_CTCF_3.raw High SLVNLGGSKSISISVAR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 179 3.74 0.00 1 25 33 3 563.32898 1687.97239 1.30 44.17 3638 3638 MS2 25/64 Linfeng_20130204_CTCF_1.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 3.74 0.00 0 0 50 3 795.32245 2383.95279 0.34 30.07 2401 2401 MS2 28/120 Linfeng_20130201_rIgG_5.raw High SLVNLGGSKSISISVAR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 176 3.74 0.00 1 15 13 3 563.32751 1687.96799 -1.30 44.48 4084 4084 MS2 27/64 Linfeng_20130201_rIgG_9.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.73 0.00 0 0 50 4 828.83337 3312.31167 1.04 26.03 2154 2154 MS2 50/228 Linfeng_20130201_rIgG_3.raw High LRSEIDNVKK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 414 3.73 0.00 2 6 50 3 401.23456 1201.68912 -0.71 18.33 1154 1154 MS2 22/36 Linfeng_20130201_rIgG_2.raw High KQISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 566 3.73 0.00 1 25 50 3 615.65320 1844.94504 -0.60 34.40 3045 3045 MS2 25/60 Linfeng_20130201_rIgG_10.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 3.73 0.00 0 0 50 3 795.32275 2383.95371 0.73 24.96 2043 2043 MS2 24/120 Linfeng_20130201_rIgG_9.raw High LDSELKNmQDmVEDYR Unambiguous 1 1 P04264 M8(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 114 3.73 0.00 1 0 50 2 1009.44708 2017.88689 1.32 31.19 2729 2729 MS2 20/30 Linfeng_20130201_rIgG_10.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.73 0.00 0 0 50 3 1104.77600 3312.31345 1.58 32.06 2044 2044 MS2 29/152 Linfeng_20130204_CTCF_6.raw High KQISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 503 3.72 0.00 1 17 50 2 922.97589 1844.94451 -0.89 34.70 3055 3055 MS2 22/30 Linfeng_20130201_rIgG_4.raw High SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 482 3.72 0.00 2 4 1 4 626.06799 2501.25014 -0.71 40.51 3558 3558 MS2 39/126 Linfeng_20130201_rIgG_5.raw High LNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 503 3.72 0.00 0 15 42 2 679.35077 1357.69426 -1.17 43.93 3494 3494 MS2 20/22 Linfeng_20130204_CTCF_9.raw High LNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 475 3.72 0.00 0 14 50 2 679.35211 1357.69695 0.81 43.70 4034 4034 MS2 20/22 Linfeng_20130201_rIgG_6.raw High mSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 M1(Oxidation); C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 183 3.72 0.00 0 2 50 3 861.05884 2581.16196 0.05 32.37 2939 2939 MS2 30/100 Linfeng_20130201_rIgG_7.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 10 3.72 0.00 0 53 50 3 1104.77002 3312.29551 -3.84 32.31 2834 2834 MS2 35/152 Linfeng_20130201_rIgG_3.raw High LNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 510 3.72 0.00 0 2 12 2 679.35138 1357.69548 -0.27 43.40 3952 3952 MS2 20/22 Linfeng_20130201_rIgG_2.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.71 0.00 0 0 50 3 1104.77893 3312.32224 4.23 33.93 2233 2233 MS2 27/152 Linfeng_20130204_CTCF_6.raw High LDSELKNmQDmVEDYR Unambiguous 1 1 P04264 M8(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 146 3.71 0.00 1 2 50 3 673.29962 2017.88431 0.04 30.85 2687 2687 MS2 29/60 Linfeng_20130201_rIgG_2.raw High GGSGGGGGGSSGGRGSGGGSSGGSIGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 152 3.71 0.00 1 68 50 3 693.97656 2079.91513 0.15 15.80 825 825 MS2 27/108 Linfeng_20130201_rIgG_7.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.70 0.00 0 0 50 4 828.83148 3312.30410 -1.25 26.06 2189 2189 MS2 44/228 Linfeng_20130201_rIgG_6.raw High mSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 M1(Oxidation); C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 186 3.70 0.00 0 0 50 3 861.05908 2581.16269 0.34 32.56 2318 2318 MS2 28/100 Linfeng_20130204_CTCF_7.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 544 3.70 0.00 0 13 50 2 738.39716 1475.78703 1.16 36.90 3292 3292 MS2 17/22 Linfeng_20130201_rIgG_3.raw High SLVNLGGSKSISISVAR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 150 3.70 0.00 1 13 36 2 844.48877 1687.97026 0.04 43.95 4059 4059 MS2 23/32 Linfeng_20130201_rIgG_1.raw High QISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 422 3.70 0.00 0 2 34 2 858.92969 1716.85210 0.53 39.78 3683 3683 MS2 22/28 Linfeng_20130201_rIgG_7.raw High NKLNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 484 3.69 0.00 1 14 36 2 800.42047 1599.83367 -0.05 45.86 3772 3772 MS2 22/26 Linfeng_20130204_CTCF_2.raw High LNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 511 3.69 0.00 0 0 17 2 679.35156 1357.69585 0.00 43.61 3948 3948 MS2 20/22 Linfeng_20130201_rIgG_5.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.69 0.00 0 0 50 3 1104.77771 3312.31858 3.12 27.62 2334 2334 MS2 33/152 Linfeng_20130201_rIgG_2.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 553 3.69 0.00 0 0 50 2 738.39685 1475.78642 0.75 34.74 2883 2883 MS2 20/22 Linfeng_20130201_rIgG_5.raw High QISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 527 3.68 0.00 0 24 50 3 572.95630 1716.85434 1.84 40.05 3067 3067 MS2 19/56 Linfeng_20130204_CTCF_7.raw High NKLNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 545 3.68 0.00 1 3 16 3 533.94946 1599.83384 0.05 45.66 4202 4202 MS2 30/52 Linfeng_20130201_rIgG_3.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 511 3.68 0.00 0 1 24 2 590.30420 1179.60112 0.55 37.61 2604 2604 MS2 17/18 Linfeng_20130204_CTCF_6.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 377 3.67 0.00 0 0 50 3 553.26978 1657.79477 1.10 38.88 3494 3494 MS2 29/64 Linfeng_20130201_rIgG_3.raw High WELLQQVDTSTR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 488 3.67 0.00 0 17 27 2 738.38159 1475.75591 4.72 50.38 4165 4165 MS2 18/22 Linfeng_20130204_CTCF_10.raw High LDSELKNmQDmVEDYR Unambiguous 1 1 P04264 M8(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 138 3.66 0.00 1 0 50 3 673.29944 2017.88376 -0.23 31.22 2514 2514 MS2 31/60 Linfeng_20130201_rIgG_5.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 474 3.66 0.00 0 4 50 2 738.40070 1475.79411 5.96 35.25 2567 2567 MS2 16/22 Linfeng_20130204_CTCF_8.raw High SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 509 3.66 0.00 2 16 0 4 626.07086 2501.26162 3.88 41.08 2978 2978 MS2 29/126 Linfeng_20130204_CTCF_6.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 3.65 0.00 0 5 50 3 795.32208 2383.95169 -0.12 28.77 1724 1724 MS2 31/120 Linfeng_20130204_CTCF_6.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 20 3.65 0.00 0 0 50 3 795.32458 2383.95920 3.03 29.91 2385 2385 MS2 23/120 Linfeng_20130201_rIgG_5.raw High LNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 502 3.65 0.00 0 4 18 2 679.35168 1357.69609 0.18 43.55 3971 3971 MS2 20/22 Linfeng_20130201_rIgG_4.raw High SLNNQFASFIDK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 430 3.65 0.00 0 6 36 2 692.34790 1383.68852 -1.33 51.31 4264 4264 MS2 19/22 Linfeng_20130204_CTCF_10.raw High LNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 471 3.65 0.00 0 33 43 2 679.35193 1357.69658 0.54 43.78 4010 4010 MS2 20/22 Linfeng_20130201_rIgG_9.raw High SGYRSGGGFSSGSAGIINYQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 477 3.65 0.00 1 12 50 3 707.67554 2121.01206 0.55 36.47 3265 3265 MS2 25/80 Linfeng_20130201_rIgG_1.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.65 0.00 0 0 50 3 1104.77454 3312.30906 0.25 26.50 2239 2239 MS2 31/152 Linfeng_20130201_rIgG_6.raw High mSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 M1(Oxidation); C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 177 3.65 0.00 0 0 50 3 861.05725 2581.15720 -1.79 34.43 3059 3059 MS2 28/100 Linfeng_20130201_rIgG_1.raw High QISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 409 3.65 0.00 0 0 40 2 858.92865 1716.85002 -0.67 39.65 3576 3576 MS2 21/28 Linfeng_20130201_rIgG_10.raw High NKLNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 541 3.64 0.00 1 16 22 3 533.94934 1599.83347 -0.18 45.98 4331 4331 MS2 29/52 Linfeng_20130201_rIgG_7.raw High SLVNLGGSKSISISVAR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 183 3.64 0.00 1 9 16 3 563.32806 1687.96964 -0.33 44.49 3628 3628 MS2 28/64 Linfeng_20130204_CTCF_2.raw High QISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 419 3.64 0.00 0 1 26 2 858.92938 1716.85149 0.18 39.80 3142 3142 MS2 23/28 Linfeng_20130204_CTCF_2.raw High LDSELKNmQDMVEDYR Unambiguous 1 1 P04264 M8(Oxidation) CID 1.0000 0.0000 1 1 159 3.64 0.00 1 11 50 3 667.96729 2001.88730 -1.01 36.50 3264 3264 MS2 28/60 Linfeng_20130201_rIgG_9.raw High mSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 M1(Oxidation); C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 155 3.64 0.00 0 81 50 3 861.05609 2581.15372 -3.14 32.18 2807 2807 MS2 29/100 Linfeng_20130201_rIgG_4.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 592 3.64 0.00 0 17 50 2 738.39545 1475.78362 -1.15 40.94 3306 3306 MS2 16/22 Linfeng_20130204_CTCF_1.raw High KQISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 585 3.63 0.00 1 28 50 3 615.65289 1844.94413 -1.10 34.67 3082 3082 MS2 22/60 Linfeng_20130201_rIgG_9.raw High FSScGGGGGSFGAGGGFGSR Unambiguous 1 1 P04264 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 50 3.63 0.00 0 29 50 2 883.37079 1765.73430 -0.29 58.50 5726 5726 MS2 24/38 Linfeng_20130201_rIgG_3.raw High QISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 460 3.63 0.00 0 14 11 3 572.95538 1716.85160 0.24 39.72 3461 3461 MS2 26/56 Linfeng_20130201_rIgG_5.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.63 0.00 0 0 50 3 1104.77551 3312.31198 1.13 36.28 2470 2470 MS2 26/152 Linfeng_20130204_CTCF_6.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 21 3.63 0.00 0 0 50 3 795.32367 2383.95646 1.88 27.88 2186 2186 MS2 26/120 Linfeng_20130201_rIgG_5.raw High NKLNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 508 3.63 0.00 1 11 24 2 800.42078 1599.83428 0.33 45.67 4203 4203 MS2 22/26 Linfeng_20130201_rIgG_3.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 15 3.63 0.00 0 0 50 2 1192.48096 2383.95464 1.12 23.32 1844 1844 MS2 25/60 Linfeng_20130201_rIgG_6.raw High LNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 523 3.62 0.00 0 11 37 2 679.35132 1357.69536 -0.36 43.73 4092 4092 MS2 20/22 Linfeng_20130201_rIgG_7.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 16 3.61 0.00 0 0 50 2 1192.47937 2383.95146 -0.21 23.87 1893 1893 MS2 24/60 Linfeng_20130201_rIgG_10.raw High MSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 216 3.61 0.00 0 0 50 3 855.72675 2565.16568 -0.48 34.15 2494 2494 MS2 24/100 Linfeng_20130204_CTCF_9.raw High SGYRSGGGFSSGSAGIINYQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 489 3.61 0.00 1 12 50 3 707.67572 2121.01261 0.81 36.82 3284 3284 MS2 27/80 Linfeng_20130201_rIgG_3.raw High LDSELKNmQDmVEDYR Unambiguous 1 1 P04264 M8(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 115 3.61 0.00 1 0 50 2 1009.44531 2017.88335 -0.44 31.37 2742 2742 MS2 21/30 Linfeng_20130201_rIgG_3.raw High SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 420 3.61 0.00 1 22 50 3 447.56122 1340.66910 -0.13 22.81 1779 1779 MS2 23/44 Linfeng_20130201_rIgG_6.raw High SLVNLGGSKSISISVAR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 194 3.60 0.00 1 33 13 3 563.32776 1687.96872 -0.87 44.13 4013 4013 MS2 28/64 Linfeng_20130201_rIgG_5.raw High NKLNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 555 3.60 0.00 1 19 15 3 533.94965 1599.83438 0.40 45.75 4216 4216 MS2 28/52 Linfeng_20130201_rIgG_5.raw High QISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 461 3.59 0.00 0 2 50 3 572.95520 1716.85105 -0.08 39.80 3685 3685 MS2 25/56 Linfeng_20130201_rIgG_7.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.59 0.00 0 0 50 3 1104.77441 3312.30869 0.14 26.56 2246 2246 MS2 35/152 Linfeng_20130201_rIgG_6.raw High KQISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 580 3.59 0.00 1 25 18 3 615.65387 1844.94706 0.49 34.88 2329 2329 MS2 23/60 Linfeng_20130204_CTCF_6.raw High LDSELKNMQDmVEDYR Unambiguous 1 1 P04264 M11(Oxidation) CID 1.0000 0.0000 1 1 171 3.59 0.00 1 13 37 3 667.96838 2001.89060 0.64 43.42 4059 4059 MS2 31/60 Linfeng_20130201_rIgG_7.raw High NKLNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 474 3.59 0.00 1 12 29 2 800.41968 1599.83208 -1.05 45.92 4244 4244 MS2 22/26 Linfeng_20130201_rIgG_9.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.58 0.00 0 0 50 3 1104.77502 3312.31052 0.69 26.61 2219 2219 MS2 27/152 Linfeng_20130201_rIgG_1.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 556 3.58 0.00 0 22 50 2 738.39703 1475.78679 1.00 43.53 3977 3977 MS2 20/22 Linfeng_20130201_rIgG_3.raw High AEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 480 3.58 0.00 1 14 17 3 762.71320 2286.12503 0.05 43.68 3429 3429 MS2 23/76 Linfeng_20130204_CTCF_10.raw High LDSELKNmQDmVEDYR Unambiguous 1 1 P04264 M8(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 132 3.58 0.00 1 2 50 3 673.29895 2017.88230 -0.96 31.17 2708 2708 MS2 28/60 Linfeng_20130201_rIgG_4.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.58 0.00 0 0 50 4 828.83423 3312.31508 2.07 26.17 2201 2201 MS2 49/228 Linfeng_20130201_rIgG_6.raw High NKLNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 513 3.58 0.00 1 23 50 2 800.42114 1599.83501 0.79 45.87 4321 4321 MS2 21/26 Linfeng_20130201_rIgG_7.raw High QISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 410 3.58 0.00 0 0 16 2 858.92975 1716.85222 0.61 39.66 3575 3575 MS2 24/28 Linfeng_20130201_rIgG_3.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.58 0.00 0 2 26 4 828.83319 3312.31093 0.82 26.25 1481 1481 MS2 41/228 Linfeng_20130204_CTCF_6.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 14 3.58 0.00 0 9 50 3 795.32062 2383.94730 -1.96 22.80 1773 1773 MS2 29/120 Linfeng_20130201_rIgG_9.raw High QISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 456 3.57 0.00 0 2 13 3 572.95520 1716.85105 -0.08 39.95 3648 3648 MS2 27/56 Linfeng_20130201_rIgG_6.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 19 3.57 0.00 0 0 50 2 1192.48206 2383.95683 2.04 23.70 1914 1914 MS2 20/60 Linfeng_20130201_rIgG_7.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.57 0.00 0 0 50 3 1104.77637 3312.31455 1.91 26.94 2265 2265 MS2 33/152 Linfeng_20130201_rIgG_9.raw High NKLNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 475 3.57 0.00 1 11 39 2 800.42023 1599.83318 -0.36 45.47 3771 3771 MS2 21/26 Linfeng_20130204_CTCF_1.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.57 0.00 0 0 50 3 1104.77380 3312.30686 -0.41 26.68 2227 2227 MS2 31/152 Linfeng_20130201_rIgG_10.raw High AEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 470 3.57 0.00 1 37 50 3 762.71289 2286.12412 -0.35 43.08 3525 3525 MS2 20/76 Linfeng_20130204_CTCF_1.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 356 3.57 0.00 0 19 50 2 829.39972 1657.79216 -0.47 51.81 4986 4986 MS2 20/32 Linfeng_20130201_rIgG_5.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.56 0.00 0 68 50 3 1104.77429 3312.30832 0.03 31.55 2759 2759 MS2 30/152 Linfeng_20130201_rIgG_3.raw High NKLNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 514 3.56 0.00 1 19 50 2 800.41937 1599.83147 -1.43 46.10 3492 3492 MS2 21/26 Linfeng_20130204_CTCF_3.raw High SLVNLGGSKSISISVAR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 196 3.56 0.00 1 40 50 3 563.32788 1687.96909 -0.65 43.98 4012 4012 MS2 27/64 Linfeng_20130201_rIgG_2.raw High QISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 382 3.56 0.00 0 3 32 2 858.92920 1716.85112 -0.03 40.18 3055 3055 MS2 21/28 Linfeng_20130204_CTCF_10.raw High GSGGGSSGGSIGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 241 3.55 0.00 0 0 50 2 546.75549 1092.50371 0.73 16.17 873 873 MS2 19/26 Linfeng_20130201_rIgG_6.raw High mSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 M1(Oxidation); C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 186 3.55 0.00 0 0 50 3 861.05920 2581.16306 0.48 32.72 2292 2292 MS2 28/100 Linfeng_20130204_CTCF_10.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 14 3.55 0.00 0 0 50 2 1192.47888 2383.95049 -0.62 23.83 1889 1889 MS2 23/60 Linfeng_20130201_rIgG_1.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 556 3.55 0.00 0 17 50 2 738.39838 1475.78948 2.82 40.76 2941 2941 MS2 18/22 Linfeng_20130204_CTCF_4.raw High GGSGGGGGGSSGGRGSGGGSSGGSIGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 153 3.55 0.00 1 27 50 3 693.97644 2079.91477 -0.03 15.79 820 820 MS2 29/108 Linfeng_20130201_rIgG_9.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 12 3.55 0.00 0 11 50 2 1192.47681 2383.94634 -2.36 23.07 1813 1813 MS2 22/60 Linfeng_20130201_rIgG_6.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 530 3.54 0.00 0 5 50 2 590.30426 1179.60124 0.65 36.66 2746 2746 MS2 17/18 Linfeng_20130204_CTCF_9.raw High WELLQQVDTSTR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 487 3.54 0.00 0 12 9 2 738.38177 1475.75627 4.97 50.05 3911 3911 MS2 18/22 Linfeng_20130204_CTCF_4.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.53 0.00 0 9 50 3 1104.77539 3312.31162 1.02 33.01 2139 2139 MS2 31/152 Linfeng_20130204_CTCF_6.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 3.53 0.00 0 8 50 2 1192.48340 2383.95952 3.17 23.14 1796 1796 MS2 27/60 Linfeng_20130201_rIgG_8.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 14 3.53 0.00 0 0 50 2 1192.47925 2383.95122 -0.32 24.19 1937 1937 MS2 25/60 Linfeng_20130201_rIgG_3.raw High mSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 M1(Oxidation); C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 189 3.52 0.00 0 0 50 3 861.05933 2581.16343 0.62 31.72 2772 2772 MS2 25/100 Linfeng_20130201_rIgG_2.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 449 3.52 0.00 0 14 50 2 590.30310 1179.59892 -1.31 36.82 2706 2706 MS2 16/18 Linfeng_20130204_CTCF_10.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 442 3.52 0.00 0 0 5 2 590.30518 1179.60307 2.21 36.52 2494 2494 MS2 17/18 Linfeng_20130204_CTCF_6.raw High LDSELKNmQDMVEDYR Unambiguous 1 1 P04264 M8(Oxidation) CID 1.0000 0.0000 1 1 177 3.52 0.00 1 11 50 3 667.96869 2001.89151 1.10 36.57 3354 3354 MS2 28/60 Linfeng_20130201_rIgG_7.raw High NKLNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 516 3.51 0.00 1 21 19 3 533.95123 1599.83915 3.37 45.57 3781 3781 MS2 25/52 Linfeng_20130204_CTCF_1.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.51 0.00 0 0 50 3 1104.77441 3312.30869 0.14 26.17 2168 2168 MS2 32/152 Linfeng_20130201_rIgG_1.raw High LDSELKNmQDmVEDYR Unambiguous 1 1 P04264 M8(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 108 3.51 0.00 1 0 50 2 1009.44214 2017.87700 -3.58 31.33 2724 2724 MS2 20/30 Linfeng_20130201_rIgG_4.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 13 3.51 0.00 0 48 50 3 795.32031 2383.94638 -2.34 26.68 2227 2227 MS2 26/120 Linfeng_20130201_rIgG_3.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 18 3.51 0.00 0 0 50 3 795.32300 2383.95444 1.04 24.34 1934 1934 MS2 25/120 Linfeng_20130201_rIgG_2.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 14 3.50 0.00 0 0 50 3 795.32013 2383.94583 -2.57 25.77 2123 2123 MS2 27/120 Linfeng_20130201_rIgG_1.raw High KQISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 595 3.50 0.00 1 28 50 3 615.65387 1844.94706 0.49 34.67 3166 3166 MS2 22/60 Linfeng_20130201_rIgG_7.raw High LNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 507 3.50 0.00 0 20 30 2 679.35077 1357.69426 -1.17 43.15 3971 3971 MS2 20/22 Linfeng_20130201_rIgG_1.raw High SLVNLGGSKSISISVAR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 158 3.50 0.00 1 0 50 2 844.48822 1687.96916 -0.61 44.52 4175 4175 MS2 23/32 Linfeng_20130201_rIgG_7.raw High NKLNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 543 3.50 0.00 1 18 10 3 533.94958 1599.83420 0.28 45.93 4275 4275 MS2 27/52 Linfeng_20130201_rIgG_6.raw High LNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 472 3.50 0.00 0 8 23 2 679.35205 1357.69682 0.72 44.17 3483 3483 MS2 20/22 Linfeng_20130204_CTCF_10.raw High mSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 M1(Oxidation); C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 196 3.50 0.00 0 0 50 3 861.05994 2581.16526 1.33 32.60 2299 2299 MS2 23/100 Linfeng_20130204_CTCF_8.raw High SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 411 3.50 0.00 1 0 50 2 670.83826 1340.66924 -0.03 22.55 1742 1742 MS2 18/22 Linfeng_20130201_rIgG_9.raw High WELLQQVDTSTR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 416 3.49 0.00 0 21 0 2 738.37573 1475.74419 -3.22 49.74 4686 4686 MS2 18/22 Linfeng_20130201_rIgG_4.raw High SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 417 3.49 0.00 1 16 50 3 447.56058 1340.66718 -1.57 22.61 1741 1741 MS2 20/44 Linfeng_20130201_rIgG_10.raw High WELLQQVDTSTR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 447 3.49 0.00 0 10 1 2 738.37726 1475.74724 -1.15 49.90 4721 4721 MS2 18/22 Linfeng_20130201_rIgG_9.raw High LDSELKNmQDmVEDYR Unambiguous 1 1 P04264 M8(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 138 3.49 0.00 1 0 50 3 673.29944 2017.88376 -0.23 31.32 2785 2785 MS2 28/60 Linfeng_20130201_rIgG_6.raw High LDSELKNMQDmVEDYR Unambiguous 1 1 P04264 M11(Oxidation) CID 1.0000 0.0000 1 1 168 3.49 0.00 1 0 50 2 1001.45093 2001.89458 2.63 43.40 3966 3966 MS2 23/30 Linfeng_20130201_rIgG_10.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.49 0.00 0 0 50 3 1104.77698 3312.31638 2.46 27.06 2280 2280 MS2 32/152 Linfeng_20130201_rIgG_9.raw High KQISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 575 3.48 0.00 1 34 37 3 615.65356 1844.94614 -0.01 33.95 3012 3012 MS2 23/60 Linfeng_20130201_rIgG_1.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 14 3.48 0.00 0 11 50 2 1192.47925 2383.95122 -0.32 24.51 1988 1988 MS2 24/60 Linfeng_20130201_rIgG_9.raw High SLVNLGGSKSISISVAR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 177 3.48 0.00 1 33 11 3 563.32758 1687.96817 -1.20 44.35 4115 4115 MS2 24/64 Linfeng_20130201_rIgG_8.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 3.48 0.00 0 0 50 2 1192.48230 2383.95732 2.24 22.85 1770 1770 MS2 25/60 Linfeng_20130201_rIgG_10.raw High WELLQQVDTSTR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 426 3.48 0.00 0 0 1 2 738.37988 1475.75249 2.40 50.42 3968 3968 MS2 19/22 Linfeng_20130204_CTCF_6.raw High SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 409 3.48 0.00 1 7 50 2 670.83807 1340.66887 -0.31 22.56 1735 1735 MS2 19/22 Linfeng_20130201_rIgG_10.raw High SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 494 3.48 0.00 2 6 50 4 626.06952 2501.25625 1.73 40.74 2942 2942 MS2 29/126 Linfeng_20130204_CTCF_3.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.48 0.00 0 0 50 4 828.83215 3312.30678 -0.44 26.55 2053 2053 MS2 48/228 Linfeng_20130201_rIgG_5.raw High QISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 459 3.47 0.00 0 10 19 3 572.95538 1716.85160 0.24 39.66 3576 3576 MS2 24/56 Linfeng_20130201_rIgG_3.raw High SLNNQFASFIDK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 452 3.47 0.00 0 3 50 2 692.35364 1383.70000 6.97 51.00 4272 4272 MS2 19/22 Linfeng_20130204_CTCF_7.raw High SLNNQFASFIDK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 377 3.47 0.00 0 1 1 2 692.34912 1383.69097 0.44 50.27 4827 4827 MS2 19/22 Linfeng_20130201_rIgG_1.raw High QISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 420 3.47 0.00 0 0 50 2 858.93158 1716.85588 2.74 40.02 3064 3064 MS2 22/28 Linfeng_20130204_CTCF_7.raw High LDSELKNMQDmVEDYR Unambiguous 1 1 P04264 M11(Oxidation) CID 1.0000 0.0000 1 1 165 3.47 0.00 1 25 41 3 667.96777 2001.88877 -0.27 42.98 3908 3908 MS2 28/60 Linfeng_20130201_rIgG_2.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 551 3.47 0.00 0 5 50 2 738.39734 1475.78740 1.41 36.24 3226 3226 MS2 19/22 Linfeng_20130201_rIgG_3.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 541 3.46 0.00 0 15 50 2 738.39716 1475.78703 1.16 36.72 2873 2873 MS2 19/22 Linfeng_20130204_CTCF_1.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.46 0.00 0 0 50 4 828.83325 3312.31118 0.89 25.92 2142 2142 MS2 47/228 Linfeng_20130201_rIgG_3.raw High SLVNLGGSKSISISVAR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 180 3.46 0.00 1 29 35 3 563.32800 1687.96946 -0.44 44.68 3347 3347 MS2 23/64 Linfeng_20130204_CTCF_3.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 455 3.46 0.00 0 28 44 2 590.30347 1179.59966 -0.69 36.23 2824 2824 MS2 17/18 Linfeng_20130204_CTCF_1.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 352 3.46 0.00 0 0 50 2 829.40021 1657.79314 0.12 39.42 3570 3570 MS2 21/32 Linfeng_20130201_rIgG_1.raw High LDSELKNmQDmVEDYR Unambiguous 1 1 P04264 M8(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 131 3.46 0.00 1 0 50 3 673.29858 2017.88120 -1.50 31.23 2742 2742 MS2 26/60 Linfeng_20130201_rIgG_9.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.46 0.00 0 0 50 3 1104.77319 3312.30503 -0.97 29.28 2526 2526 MS2 34/152 Linfeng_20130201_rIgG_2.raw High SLDLDSIIAEVK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 481 3.45 0.00 0 16 30 2 651.86127 1302.71526 0.05 50.78 4800 4800 MS2 19/22 Linfeng_20130201_rIgG_3.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.45 0.00 0 0 22 3 1104.77515 3312.31089 0.80 26.44 1683 1683 MS2 29/152 Linfeng_20130204_CTCF_7.raw High WELLQQVDTSTR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 485 3.45 0.00 0 9 3 2 738.38037 1475.75347 3.07 50.03 4162 4162 MS2 19/22 Linfeng_20130204_CTCF_7.raw High SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 398 3.45 0.00 1 8 50 2 670.83844 1340.66960 0.24 22.27 1675 1675 MS2 18/22 Linfeng_20130201_rIgG_2.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 598 3.45 0.00 0 21 50 2 738.39496 1475.78264 -1.82 40.47 3701 3701 MS2 18/22 Linfeng_20130201_rIgG_6.raw High SLNNQFASFIDK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 381 3.45 0.00 0 1 6 2 692.34857 1383.68987 -0.36 50.44 4308 4308 MS2 19/22 Linfeng_20130204_CTCF_1.raw High SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 488 3.45 0.00 2 2 25 4 626.06824 2501.25112 -0.32 40.21 3623 3623 MS2 37/126 Linfeng_20130201_rIgG_2.raw High SLDLDSIIAEVK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 466 3.44 0.00 0 12 50 2 651.86334 1302.71941 3.24 50.86 4328 4328 MS2 18/22 Linfeng_20130204_CTCF_2.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 584 3.44 0.00 0 50 50 2 738.39661 1475.78594 0.42 40.19 3228 3228 MS2 18/22 Linfeng_20130204_CTCF_1.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 495 3.44 0.00 0 19 7 2 590.30469 1179.60210 1.38 36.30 3053 3053 MS2 17/18 Linfeng_20130201_rIgG_5.raw High QISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 418 3.44 0.00 0 0 41 2 858.92999 1716.85271 0.89 39.68 3565 3565 MS2 22/28 Linfeng_20130201_rIgG_4.raw High LDSELKNmQDMVEDYR Unambiguous 1 1 P04264 M8(Oxidation) CID 1.0000 0.0000 1 1 152 3.44 0.00 1 7 50 3 667.96674 2001.88565 -1.83 36.78 2759 2759 MS2 25/60 Linfeng_20130204_CTCF_9.raw High SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 411 3.44 0.00 1 5 50 2 670.83838 1340.66948 0.15 22.57 1701 1701 MS2 19/22 Linfeng_20130201_rIgG_4.raw High SLNNQFASFIDK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 393 3.44 0.00 0 17 50 2 692.35236 1383.69744 5.11 50.86 4013 4013 MS2 19/22 Linfeng_20130204_CTCF_6.raw High MSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 217 3.43 0.00 0 0 50 3 855.72675 2565.16568 -0.48 34.53 3016 3016 MS2 29/100 Linfeng_20130201_rIgG_8.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 588 3.43 0.00 0 17 50 2 738.39642 1475.78557 0.17 43.71 3996 3996 MS2 18/22 Linfeng_20130201_rIgG_3.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.43 0.00 0 0 50 3 1104.77600 3312.31345 1.58 26.51 2208 2208 MS2 34/152 Linfeng_20130201_rIgG_1.raw High mSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 M1(Oxidation); C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 169 3.43 0.00 0 0 50 2 1291.08777 2581.16826 2.50 32.67 2855 2855 MS2 19/50 Linfeng_20130201_rIgG_4.raw High KQISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 570 3.43 0.00 1 22 45 3 615.65326 1844.94522 -0.50 34.61 3024 3024 MS2 25/60 Linfeng_20130201_rIgG_8.raw High SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 484 3.43 0.00 2 21 50 4 626.06854 2501.25234 0.17 40.69 3723 3723 MS2 40/126 Linfeng_20130201_rIgG_6.raw High WELLQQVDTSTR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 451 3.43 0.00 0 10 1 2 738.37762 1475.74797 -0.66 49.63 4645 4645 MS2 19/22 Linfeng_20130201_rIgG_2.raw High LNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 512 3.42 0.00 0 25 29 2 679.35138 1357.69548 -0.27 43.72 4039 4039 MS2 19/22 Linfeng_20130201_rIgG_8.raw High SLDLDSIIAEVK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 483 3.42 0.00 0 15 23 2 651.86115 1302.71501 -0.14 50.52 4857 4857 MS2 20/22 Linfeng_20130201_rIgG_1.raw High LNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 474 3.42 0.00 0 5 13 2 679.35217 1357.69707 0.90 43.98 3286 3286 MS2 20/22 Linfeng_20130204_CTCF_6.raw High LLRDYQELMNTK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 418 3.42 0.00 1 6 50 2 762.39746 1523.78765 -0.69 40.64 3676 3676 MS2 18/22 Linfeng_20130201_rIgG_3.raw High SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 450 3.42 0.00 1 26 50 2 670.83990 1340.67253 2.43 21.27 1540 1540 MS2 18/22 Linfeng_20130201_rIgG_2.raw High mSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 M1(Oxidation); C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 186 3.42 0.00 0 0 50 3 861.05914 2581.16288 0.41 33.84 2986 2986 MS2 31/100 Linfeng_20130201_rIgG_3.raw High LDSELKNmQDMVEDYR Unambiguous 1 1 P04264 M8(Oxidation) CID 1.0000 0.0000 1 1 172 3.42 0.00 1 2 10 3 667.96820 2001.89005 0.37 36.63 2505 2505 MS2 23/60 Linfeng_20130204_CTCF_6.raw High AEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 484 3.41 0.00 1 31 9 3 762.71411 2286.12778 1.26 43.32 3442 3442 MS2 23/76 Linfeng_20130204_CTCF_8.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.41 0.00 0 5 50 3 1104.77576 3312.31272 1.35 36.49 2491 2491 MS2 29/152 Linfeng_20130204_CTCF_6.raw High LLRDYQELMNTK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 431 3.41 0.00 1 13 50 3 508.60168 1523.79050 1.18 40.13 3646 3646 MS2 21/44 Linfeng_20130201_rIgG_1.raw High SLNNQFASFIDK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 376 3.41 0.00 0 0 2 2 692.34900 1383.69072 0.26 50.64 4785 4785 MS2 19/22 Linfeng_20130201_rIgG_3.raw High SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 477 3.41 0.00 2 18 50 3 834.42120 2501.24906 -1.14 41.84 3791 3791 MS2 25/84 Linfeng_20130201_rIgG_4.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 496 3.41 0.00 0 36 50 2 590.30273 1179.59819 -1.93 35.61 2762 2762 MS2 17/18 Linfeng_20130204_CTCF_1.raw High QISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 414 3.41 0.00 0 4 50 2 858.92987 1716.85246 0.75 39.86 3639 3639 MS2 23/28 Linfeng_20130201_rIgG_6.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 441 3.41 0.00 0 30 50 2 590.30334 1179.59941 -0.90 36.31 3234 3234 MS2 17/18 Linfeng_20130201_rIgG_10.raw High SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 427 3.41 0.00 1 7 50 2 670.83942 1340.67156 1.70 21.93 1047 1047 MS2 18/22 Linfeng_20130204_CTCF_6.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 3.41 0.00 0 0 50 3 795.32233 2383.95243 0.19 60.76 5135 5135 MS2 28/120 Linfeng_20130204_CTCF_6.raw High SLVNLGGSKSISISVAR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 173 3.40 0.00 1 76 17 3 563.32928 1687.97330 1.84 45.33 4217 4217 MS2 25/64 Linfeng_20130201_rIgG_1.raw High KQISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 580 3.40 0.00 1 28 50 3 615.65344 1844.94577 -0.20 35.06 2527 2527 MS2 23/60 Linfeng_20130204_CTCF_10.raw High SLVNLGGSKSISISVAR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 175 3.40 0.00 1 44 33 3 563.32843 1687.97074 0.32 44.78 3585 3585 MS2 24/64 Linfeng_20130204_CTCF_9.raw High LNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 481 3.40 0.00 0 22 50 2 679.35162 1357.69597 0.09 43.48 3972 3972 MS2 19/22 Linfeng_20130201_rIgG_3.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.39 0.00 0 0 50 3 1104.77698 3312.31638 2.46 26.70 1510 1510 MS2 25/152 Linfeng_20130204_CTCF_3.raw High MSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 197 3.39 0.00 0 68 50 3 855.72430 2565.15836 -3.33 33.14 2913 2913 MS2 26/100 Linfeng_20130201_rIgG_2.raw High TNAENEFVTIK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 452 3.39 0.00 0 10 50 2 633.32098 1265.63469 -2.03 37.45 2826 2826 MS2 16/20 Linfeng_20130204_CTCF_9.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 557 3.39 0.00 2 2 50 3 436.88916 1308.65293 -1.05 21.12 1536 1536 MS2 21/36 Linfeng_20130201_rIgG_10.raw High LDSELKNmQDMVEDYR Unambiguous 1 1 P04264 M8(Oxidation) CID 1.0000 0.0000 1 1 167 3.39 0.00 1 0 50 3 667.96777 2001.88877 -0.27 36.63 3310 3310 MS2 26/60 Linfeng_20130201_rIgG_6.raw High SLDLDSIIAEVK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 466 3.39 0.00 0 0 25 2 651.86139 1302.71550 0.24 50.79 4814 4814 MS2 19/22 Linfeng_20130201_rIgG_4.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 471 3.38 0.00 0 15 22 2 590.30511 1179.60295 2.10 35.43 2384 2384 MS2 17/18 Linfeng_20130204_CTCF_6.raw High LDSELKNmQDMVEDYR Unambiguous 1 1 P04264 M8(Oxidation) CID 1.0000 0.0000 1 1 168 3.38 0.00 1 7 50 3 667.96808 2001.88968 0.18 36.66 3252 3252 MS2 21/60 Linfeng_20130201_rIgG_4.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.38 0.00 0 0 50 3 1104.77454 3312.30906 0.25 37.78 2621 2621 MS2 26/152 Linfeng_20130204_CTCF_6.raw High GSGGGSSGGSIGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 259 3.38 0.00 0 1 44 2 546.75458 1092.50188 -0.95 16.23 400 400 MS2 20/26 Linfeng_20130204_CTCF_6.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 474 3.38 0.00 0 17 41 2 590.30353 1179.59978 -0.59 36.51 2695 2695 MS2 17/18 Linfeng_20130204_CTCF_8.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.38 0.00 0 11 50 3 1104.77356 3312.30613 -0.64 26.69 2304 2304 MS2 31/152 Linfeng_20130201_rIgG_7.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.38 0.00 0 34 50 3 1104.77368 3312.30649 -0.53 58.75 4933 4933 MS2 26/152 Linfeng_20130204_CTCF_6.raw High SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 500 3.38 0.00 2 0 2 4 626.06879 2501.25332 0.56 40.66 3687 3687 MS2 39/126 Linfeng_20130201_rIgG_9.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.37 0.00 0 25 50 3 1104.77417 3312.30796 -0.08 27.21 2321 2321 MS2 30/152 Linfeng_20130201_rIgG_6.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.37 0.00 0 15 50 3 1104.77539 3312.31162 1.02 31.02 2713 2713 MS2 33/152 Linfeng_20130201_rIgG_10.raw High QISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 459 3.37 0.00 0 15 50 3 572.95557 1716.85215 0.56 39.96 2863 2863 MS2 21/56 Linfeng_20130204_CTCF_3.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 10 3.37 0.00 0 0 50 2 1192.47632 2383.94536 -2.77 26.50 2047 2047 MS2 21/60 Linfeng_20130201_rIgG_5.raw High LDSELKNmQDmVEDYR Unambiguous 1 1 P04264 M8(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 133 3.36 0.00 1 0 50 3 673.29803 2017.87955 -2.32 31.14 2719 2719 MS2 23/60 Linfeng_20130201_rIgG_3.raw High mSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 M1(Oxidation); C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 237 3.36 0.00 0 0 50 3 861.06323 2581.17514 5.16 32.85 2124 2124 MS2 21/100 Linfeng_20130204_CTCF_6.raw High SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 477 3.36 0.00 2 6 50 4 626.06769 2501.24892 -1.20 40.49 3213 3213 MS2 27/126 Linfeng_20130204_CTCF_2.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 597 3.36 0.00 0 18 50 2 738.39563 1475.78398 -0.91 40.38 3650 3650 MS2 19/22 Linfeng_20130201_rIgG_3.raw High LDSELKNMQDmVEDYR Unambiguous 1 1 P04264 M11(Oxidation) CID 1.0000 0.0000 1 1 172 3.36 0.00 1 13 23 3 667.96820 2001.89005 0.37 43.46 3518 3518 MS2 23/60 Linfeng_20130204_CTCF_2.raw High LLRDYQELMNTK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 403 3.36 0.00 1 10 50 2 762.39911 1523.79094 1.47 40.36 3639 3639 MS2 17/22 Linfeng_20130201_rIgG_2.raw High SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 388 3.36 0.00 1 11 50 2 670.83875 1340.67021 0.70 22.62 1750 1750 MS2 19/22 Linfeng_20130201_rIgG_3.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 15 3.36 0.00 0 0 50 2 1192.47900 2383.95073 -0.52 24.97 2045 2045 MS2 18/60 Linfeng_20130201_rIgG_9.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.36 0.00 0 0 50 3 1104.77429 3312.30832 0.03 26.63 2222 2222 MS2 32/152 Linfeng_20130201_rIgG_10.raw High QISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 475 3.36 0.00 0 0 32 2 858.93024 1716.85320 1.17 39.65 3453 3453 MS2 20/28 Linfeng_20130201_rIgG_5.raw High WELLQQVDTSTR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 460 3.36 0.00 0 13 3 2 738.37927 1475.75127 1.58 50.02 3907 3907 MS2 19/22 Linfeng_20130204_CTCF_3.raw High TNAENEFVTIKK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 535 3.35 0.00 1 14 50 2 697.36853 1393.72978 -1.76 31.83 2792 2792 MS2 14/22 Linfeng_20130201_rIgG_10.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.35 0.00 0 6 50 3 1104.77563 3312.31235 1.24 27.99 2388 2388 MS2 30/152 Linfeng_20130201_rIgG_10.raw High GSGGGSSGGSIGGRGSSSGGVK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 398 3.35 0.00 1 0 50 2 876.41882 1751.83037 2.04 16.19 873 873 MS2 18/42 Linfeng_20130201_rIgG_7.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 20 3.35 0.00 0 5 50 3 795.32428 2383.95829 2.65 36.60 2502 2502 MS2 30/120 Linfeng_20130204_CTCF_6.raw High LDSELKNMQDmVEDYR Unambiguous 1 1 P04264 M11(Oxidation) CID 1.0000 0.0000 1 1 170 3.35 0.00 1 31 30 3 667.96796 2001.88932 0.00 43.36 3951 3951 MS2 26/60 Linfeng_20130201_rIgG_4.raw High mSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 M1(Oxidation); C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 204 3.35 0.00 0 10 50 3 861.06110 2581.16874 2.68 34.23 3039 3039 MS2 33/100 Linfeng_20130201_rIgG_1.raw High QISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 408 3.35 0.00 0 0 45 2 858.92987 1716.85246 0.75 39.26 3554 3554 MS2 22/28 Linfeng_20130201_rIgG_1.raw High LDSELKNmQDMVEDYR Unambiguous 1 1 P04264 M8(Oxidation) CID 1.0000 0.0000 1 1 174 3.34 0.00 1 2 50 3 667.96844 2001.89078 0.73 36.66 3236 3236 MS2 25/60 Linfeng_20130201_rIgG_8.raw High SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 359 3.34 0.00 1 0 50 2 670.83893 1340.67058 0.97 21.54 1599 1599 MS2 16/22 Linfeng_20130201_rIgG_9.raw High SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 500 3.34 0.00 2 5 6 4 626.06879 2501.25332 0.56 40.62 3663 3663 MS2 38/126 Linfeng_20130201_rIgG_4.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 16 3.34 0.00 0 0 50 3 795.32159 2383.95023 -0.73 22.62 1721 1721 MS2 22/120 Linfeng_20130201_rIgG_2.raw High KQISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 526 3.34 0.00 1 74 50 2 922.97546 1844.94365 -1.36 34.28 3024 3024 MS2 20/30 Linfeng_20130201_rIgG_2.raw High SLVNLGGSKSISISVAR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 146 3.33 0.00 1 0 50 2 844.48926 1687.97124 0.62 44.62 4100 4100 MS2 22/32 Linfeng_20130201_rIgG_9.raw High SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 443 3.33 0.00 1 20 50 3 447.56104 1340.66855 -0.54 22.64 1753 1753 MS2 20/44 Linfeng_20130201_rIgG_9.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.33 0.00 0 0 50 3 1104.77344 3312.30576 -0.75 26.89 2236 2236 MS2 31/152 Linfeng_20130201_rIgG_4.raw High LNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 545 3.33 0.00 0 92 50 2 679.35327 1357.69927 2.52 43.79 3254 3254 MS2 19/22 Linfeng_20130204_CTCF_3.raw High GGSGGGGGGSSGGRGSGGGSSGGSIGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 179 3.33 0.00 1 0 50 2 1040.46680 2079.92632 5.53 15.83 829 829 MS2 17/54 Linfeng_20130201_rIgG_6.raw High LDSELKNmQDmVEDYR Unambiguous 1 1 P04264 M8(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 134 3.33 0.00 1 0 50 3 673.29822 2017.88010 -2.05 31.27 2692 2692 MS2 28/60 Linfeng_20130201_rIgG_8.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 510 3.33 0.00 0 38 50 2 590.30469 1179.60210 1.38 37.17 2575 2575 MS2 16/18 Linfeng_20130204_CTCF_4.raw High SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 384 3.32 0.00 1 0 50 2 670.83868 1340.67009 0.60 21.49 1142 1142 MS2 17/22 Linfeng_20130204_CTCF_1.raw High QISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 458 3.32 0.00 0 0 50 2 858.93127 1716.85527 2.38 39.31 3531 3531 MS2 23/28 Linfeng_20130201_rIgG_2.raw High NKLNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 515 3.32 0.00 1 15 8 3 533.94891 1599.83219 -0.98 45.79 4291 4291 MS2 30/52 Linfeng_20130201_rIgG_8.raw High MSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 196 3.32 0.00 0 78 50 3 855.72052 2565.14701 -7.76 32.34 2835 2835 MS2 25/100 Linfeng_20130201_rIgG_2.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 595 3.32 0.00 0 13 50 2 738.39624 1475.78520 -0.08 40.69 2936 2936 MS2 17/22 Linfeng_20130204_CTCF_3.raw High LLRDYQELMNTK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 468 3.32 0.00 1 2 25 3 508.60120 1523.78904 0.22 40.31 3633 3633 MS2 23/44 Linfeng_20130201_rIgG_2.raw High LRSEIDNVKK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 417 3.32 0.00 2 8 50 3 401.23428 1201.68830 -1.39 18.11 1123 1123 MS2 16/36 Linfeng_20130201_rIgG_8.raw High QISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 469 3.32 0.00 0 8 50 2 858.93207 1716.85686 3.31 40.13 3083 3083 MS2 21/28 Linfeng_20130204_CTCF_8.raw High SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 485 3.31 0.00 2 4 32 4 626.06812 2501.25063 -0.51 40.20 3654 3654 MS2 39/126 Linfeng_20130201_rIgG_1.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 19 3.31 0.00 0 0 50 2 1192.48303 2383.95879 2.86 25.83 2133 2133 MS2 23/60 Linfeng_20130201_rIgG_3.raw High LDSELKNMQDmVEDYR Unambiguous 1 1 P04264 M11(Oxidation) CID 1.0000 0.0000 1 1 169 3.31 0.00 1 13 50 3 667.96802 2001.88950 0.09 43.52 3227 3227 MS2 23/60 Linfeng_20130204_CTCF_3.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.31 0.00 0 0 50 3 1104.77539 3312.31162 1.02 28.87 2283 2283 MS2 31/152 Linfeng_20130201_rIgG_5.raw High SLNNQFASFIDK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 375 3.31 0.00 0 0 2 2 692.34912 1383.69097 0.44 50.65 4796 4796 MS2 19/22 Linfeng_20130201_rIgG_4.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 556 3.31 0.00 0 20 50 2 738.39709 1475.78691 1.08 36.51 2730 2730 MS2 13/22 Linfeng_20130204_CTCF_9.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 16 3.31 0.00 0 0 50 3 795.32129 2383.94931 -1.11 26.40 2196 2196 MS2 27/120 Linfeng_20130201_rIgG_3.raw High mSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 M1(Oxidation); C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 142 3.30 0.00 0 0 50 2 1291.08240 2581.15752 -1.67 32.38 2838 2838 MS2 19/50 Linfeng_20130201_rIgG_2.raw High LDSELKNMQDmVEDYR Unambiguous 1 1 P04264 M11(Oxidation) CID 1.0000 0.0000 1 1 159 3.30 0.00 1 16 50 3 667.96735 2001.88749 -0.91 43.68 3241 3241 MS2 24/60 Linfeng_20130204_CTCF_4.raw High SLNNQFASFIDK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 393 3.30 0.00 0 1 4 2 692.34863 1383.68999 -0.27 50.65 4914 4914 MS2 19/22 Linfeng_20130201_rIgG_8.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 16 3.30 0.00 0 0 50 2 1192.48157 2383.95586 1.63 23.42 1245 1245 MS2 18/60 Linfeng_20130204_CTCF_10.raw High LLRDYQELMNTK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 466 3.30 0.00 1 30 50 2 762.39667 1523.78606 -1.73 40.69 3685 3685 MS2 16/22 Linfeng_20130201_rIgG_10.raw High SLDLDSIIAEVK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 494 3.30 0.00 0 32 34 2 651.86139 1302.71550 0.24 50.80 4784 4784 MS2 19/22 Linfeng_20130201_rIgG_2.raw High GSGGGSSGGSIGGRGSSSGGVK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 362 3.29 0.00 1 0 50 2 876.41736 1751.82744 0.36 16.19 866 866 MS2 22/42 Linfeng_20130201_rIgG_9.raw High WELLQQVDTSTR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 428 3.29 0.00 0 8 0 2 738.37762 1475.74797 -0.66 49.71 4675 4675 MS2 17/22 Linfeng_20130201_rIgG_3.raw High WELLQQVDTSTR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 444 3.29 0.00 0 18 2 2 738.37726 1475.74724 -1.15 49.83 4782 4782 MS2 18/22 Linfeng_20130201_rIgG_7.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 552 3.29 0.00 0 28 50 2 590.30365 1179.60002 -0.38 36.44 3341 3341 MS2 17/18 Linfeng_20130201_rIgG_7.raw High NKLNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 511 3.29 0.00 1 8 9 2 800.41943 1599.83159 -1.35 45.76 4288 4288 MS2 22/26 Linfeng_20130201_rIgG_8.raw High LDSELKNmQDmVEDYR Unambiguous 1 1 P04264 M8(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 151 3.29 0.00 1 0 50 2 1009.44922 2017.89116 3.43 31.55 2859 2859 MS2 18/30 Linfeng_20130201_rIgG_7.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.29 0.00 0 2 50 3 1104.77466 3312.30942 0.36 25.93 2174 2174 MS2 30/152 Linfeng_20130201_rIgG_6.raw High LDSELKNMQDmVEDYR Unambiguous 1 1 P04264 M11(Oxidation) CID 1.0000 0.0000 1 1 167 3.29 0.00 1 16 28 3 667.96777 2001.88877 -0.27 43.78 3440 3440 MS2 25/60 Linfeng_20130204_CTCF_10.raw High LDSELKNmQDmVEDYR Unambiguous 1 1 P04264 M8(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 113 3.29 0.00 1 6 50 2 1009.44525 2017.88323 -0.50 31.63 2001 2001 MS2 20/30 Linfeng_20130204_CTCF_6.raw High NKLNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 553 3.28 0.00 1 40 18 3 533.94916 1599.83292 -0.52 45.90 4242 4242 MS2 28/52 Linfeng_20130201_rIgG_9.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.28 0.00 0 0 50 3 1104.77490 3312.31015 0.58 25.61 2106 2106 MS2 35/152 Linfeng_20130201_rIgG_1.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 15 3.28 0.00 0 0 50 2 1192.47827 2383.94927 -1.13 26.27 2181 2181 MS2 22/60 Linfeng_20130201_rIgG_3.raw High SLNNQFASFIDK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 429 3.28 0.00 0 4 16 2 692.34949 1383.69170 0.97 50.84 4357 4357 MS2 19/22 Linfeng_20130204_CTCF_8.raw High LNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 555 3.28 0.00 0 36 50 2 679.35278 1357.69829 1.80 42.26 3834 3834 MS2 20/22 Linfeng_20130201_rIgG_2.raw High LLRDYQELMNTK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 442 3.28 0.00 1 35 12 3 508.60068 1523.78748 -0.80 40.75 3589 3589 MS2 22/44 Linfeng_20130201_rIgG_5.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 507 3.28 0.00 0 40 50 2 590.30530 1179.60332 2.41 38.93 2743 2743 MS2 17/18 Linfeng_20130204_CTCF_6.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 14 3.28 0.00 0 0 50 3 795.32001 2383.94547 -2.73 25.48 2074 2074 MS2 23/120 Linfeng_20130201_rIgG_2.raw High TNAENEFVTIKK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 535 3.28 0.00 1 0 50 2 697.36945 1393.73161 -0.44 30.73 2685 2685 MS2 14/22 Linfeng_20130201_rIgG_10.raw High QISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 430 3.28 0.00 0 0 50 2 858.93164 1716.85600 2.81 39.48 3155 3155 MS2 22/28 Linfeng_20130204_CTCF_1.raw High KQISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 586 3.28 0.00 1 12 47 3 615.65289 1844.94413 -1.10 34.67 2625 2625 MS2 22/60 Linfeng_20130204_CTCF_2.raw High MSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 217 3.28 0.00 0 7 50 3 855.72681 2565.16587 -0.40 34.66 3082 3082 MS2 27/100 Linfeng_20130201_rIgG_1.raw High SLNNQFASFIDK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 375 3.28 0.00 0 5 10 2 692.34882 1383.69036 0.00 50.66 4805 4805 MS2 19/22 Linfeng_20130201_rIgG_10.raw High WELLQQVDTSTR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 476 3.27 0.00 0 17 4 2 738.37897 1475.75066 1.16 50.12 4815 4815 MS2 18/22 Linfeng_20130201_rIgG_7.raw High LDSELKNmQDmVEDYR Unambiguous 1 1 P04264 M8(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 115 3.27 0.00 1 0 50 2 1009.44531 2017.88335 -0.44 31.00 2702 2702 MS2 19/30 Linfeng_20130201_rIgG_2.raw High SLDLDSIIAEVK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 489 3.27 0.00 0 23 50 2 651.86102 1302.71477 -0.32 50.88 4838 4838 MS2 19/22 Linfeng_20130201_rIgG_9.raw High LDSELKNmQDmVEDYR Unambiguous 1 1 P04264 M8(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 163 3.27 0.00 1 1 50 3 673.30066 2017.88742 1.58 31.49 2215 2215 MS2 22/60 Linfeng_20130204_CTCF_7.raw High NMQDMVEDYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 56 3.27 0.00 0 27 10 2 650.76941 1300.53154 1.41 38.94 3519 3519 MS2 15/18 Linfeng_20130201_rIgG_1.raw High LDSELKNmQDmVEDYR Unambiguous 1 1 P04264 M8(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 134 3.26 0.00 1 4 50 3 673.29822 2017.88010 -2.05 31.05 2716 2716 MS2 25/60 Linfeng_20130201_rIgG_10.raw High LLRDYQELMNTK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 449 3.26 0.00 1 3 17 3 508.60089 1523.78812 -0.38 40.67 3683 3683 MS2 23/44 Linfeng_20130201_rIgG_10.raw High FSScGGGGGSFGAGGGFGSR Unambiguous 1 1 P04264 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 51 3.26 0.00 0 36 50 3 589.24939 1765.73362 -0.68 35.78 3163 3163 MS2 32/76 Linfeng_20130201_rIgG_4.raw High SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 412 3.26 0.00 1 54 50 3 447.56152 1340.67002 0.55 21.54 1602 1602 MS2 20/44 Linfeng_20130201_rIgG_3.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 3.26 0.00 0 0 50 3 795.32275 2383.95371 0.73 23.94 1890 1890 MS2 26/120 Linfeng_20130201_rIgG_8.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 544 3.26 0.00 2 7 50 3 436.88925 1308.65320 -0.84 21.06 1533 1533 MS2 20/36 Linfeng_20130201_rIgG_3.raw High KQISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 592 3.26 0.00 1 25 50 3 615.65387 1844.94706 0.49 34.99 2557 2557 MS2 23/60 Linfeng_20130204_CTCF_7.raw High KQISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 552 3.26 0.00 1 25 50 3 615.65533 1844.95145 2.87 34.90 2349 2349 MS2 24/60 Linfeng_20130204_CTCF_4.raw High QISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 468 3.26 0.00 0 6 31 3 572.95520 1716.85105 -0.08 39.35 3535 3535 MS2 25/56 Linfeng_20130201_rIgG_2.raw High WELLQQVDTSTR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 408 3.26 0.00 0 14 1 2 738.37537 1475.74346 -3.72 49.75 4695 4695 MS2 19/22 Linfeng_20130201_rIgG_10.raw High SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 391 3.26 0.00 1 0 50 2 670.83905 1340.67082 1.15 22.80 1778 1778 MS2 19/22 Linfeng_20130201_rIgG_6.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.25 0.00 0 0 50 3 1104.77380 3312.30686 -0.41 26.75 2219 2219 MS2 29/152 Linfeng_20130201_rIgG_4.raw High SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 417 3.25 0.00 1 28 50 3 447.56122 1340.66910 -0.13 22.65 1735 1735 MS2 19/44 Linfeng_20130201_rIgG_8.raw High WELLQQVDTSTR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 446 3.25 0.00 0 13 1 2 738.37714 1475.74700 -1.32 49.71 4793 4793 MS2 17/22 Linfeng_20130201_rIgG_8.raw High LLRDYQELMNTK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 426 3.25 0.00 1 25 50 2 762.39703 1523.78679 -1.25 40.85 3687 3687 MS2 16/22 Linfeng_20130201_rIgG_4.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 546 3.25 0.00 2 8 50 3 436.88937 1308.65357 -0.56 20.77 1473 1473 MS2 19/36 Linfeng_20130201_rIgG_2.raw High mSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 M1(Oxidation); C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 184 3.24 0.00 0 8 50 3 861.05884 2581.16196 0.05 32.25 2828 2828 MS2 30/100 Linfeng_20130201_rIgG_3.raw High LLRDYQELMNTK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 444 3.24 0.00 1 28 50 2 762.39966 1523.79204 2.19 40.25 3659 3659 MS2 18/22 Linfeng_20130201_rIgG_1.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 555 3.24 0.00 0 18 50 2 590.30396 1179.60063 0.14 35.31 2687 2687 MS2 17/18 Linfeng_20130204_CTCF_2.raw High SLNNQFASFIDK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 430 3.24 0.00 0 3 15 2 692.34955 1383.69182 1.05 50.77 4892 4892 MS2 19/22 Linfeng_20130201_rIgG_7.raw High SLNNQFASFIDK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 438 3.24 0.00 0 16 23 2 692.34973 1383.69219 1.32 50.70 4848 4848 MS2 19/22 Linfeng_20130201_rIgG_6.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.24 0.00 0 0 50 3 1104.77527 3312.31125 0.91 34.52 2293 2293 MS2 23/152 Linfeng_20130204_CTCF_6.raw High TNAENEFVTIK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 487 3.24 0.00 0 6 50 2 633.32159 1265.63591 -1.07 37.34 2592 2592 MS2 14/20 Linfeng_20130204_CTCF_4.raw High QISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 465 3.23 0.00 0 8 11 3 572.95477 1716.84977 -0.82 39.80 3584 3584 MS2 27/56 Linfeng_20130201_rIgG_8.raw High LDSELKNmQDmVEDYR Unambiguous 1 1 P04264 M8(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 143 3.23 0.00 1 62 50 3 673.29987 2017.88504 0.40 31.24 2829 2829 MS2 21/60 Linfeng_20130201_rIgG_7.raw High QISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 437 3.23 0.00 0 0 50 2 858.92859 1716.84990 -0.75 40.87 3700 3700 MS2 20/28 Linfeng_20130201_rIgG_3.raw High TNAENEFVTIKK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 474 3.23 0.00 1 7 50 2 697.36975 1393.73223 0.00 31.66 2767 2767 MS2 16/22 Linfeng_20130201_rIgG_2.raw High LLRDYQELMNTK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 452 3.22 0.00 1 11 50 3 508.60138 1523.78958 0.58 40.80 3788 3788 MS2 23/44 Linfeng_20130201_rIgG_7.raw High TNAENEFVTIK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 479 3.22 0.00 0 12 50 2 633.32227 1265.63725 -0.01 37.14 2577 2577 MS2 16/20 Linfeng_20130204_CTCF_3.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.22 0.00 0 11 50 4 828.83148 3312.30410 -1.25 26.04 2138 2138 MS2 48/228 Linfeng_20130201_rIgG_8.raw High SLDLDSIIAEVK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 481 3.22 0.00 0 15 50 2 651.86139 1302.71550 0.24 50.92 4874 4874 MS2 19/22 Linfeng_20130201_rIgG_6.raw High LDSELKNmQDMVEDYR Unambiguous 1 1 P04264 M8(Oxidation) CID 1.0000 0.0000 1 1 172 3.22 0.00 1 5 50 3 667.96814 2001.88987 0.27 36.64 2525 2525 MS2 20/60 Linfeng_20130204_CTCF_3.raw High TNAENEFVTIKK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 541 3.22 0.00 1 28 50 2 697.36914 1393.73100 -0.88 31.81 2382 2382 MS2 14/22 Linfeng_20130204_CTCF_1.raw High LLRDYQELMNTK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 470 3.21 0.00 1 8 50 2 762.39661 1523.78594 -1.81 41.24 3189 3189 MS2 16/22 Linfeng_20130204_CTCF_7.raw High QISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 466 3.21 0.00 0 2 11 3 572.95514 1716.85086 -0.18 39.99 2858 2858 MS2 21/56 Linfeng_20130204_CTCF_6.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 563 3.21 0.00 0 52 50 2 590.30383 1179.60039 -0.07 35.07 2708 2708 MS2 17/18 Linfeng_20130204_CTCF_1.raw High TNAENEFVTIKK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 537 3.21 0.00 1 41 50 2 697.36847 1393.72966 -1.84 31.99 2816 2816 MS2 13/22 Linfeng_20130201_rIgG_9.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.21 0.00 0 0 50 3 1104.77771 3312.31858 3.12 28.30 2421 2421 MS2 28/152 Linfeng_20130201_rIgG_3.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.21 0.00 0 0 50 3 1104.77539 3312.31162 1.02 26.08 2144 2144 MS2 30/152 Linfeng_20130201_rIgG_2.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.21 0.00 0 0 50 3 1104.77454 3312.30906 0.25 29.23 2542 2542 MS2 28/152 Linfeng_20130201_rIgG_9.raw High WELLQQVDTSTR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 422 3.20 0.00 0 15 0 2 738.37622 1475.74516 -2.56 49.27 4669 4669 MS2 18/22 Linfeng_20130201_rIgG_5.raw High TNAENEFVTIKK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 538 3.20 0.00 1 26 50 2 697.36945 1393.73161 -0.44 31.67 2786 2786 MS2 15/22 Linfeng_20130201_rIgG_1.raw High LRSEIDNVKK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 441 3.20 0.00 2 66 50 3 401.23352 1201.68601 -3.30 18.67 1203 1203 MS2 16/36 Linfeng_20130201_rIgG_10.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.20 0.00 0 0 50 3 1104.77734 3312.31748 2.79 29.17 2485 2485 MS2 32/152 Linfeng_20130201_rIgG_8.raw High SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 519 3.20 0.00 2 0 8 4 626.07007 2501.25844 2.61 40.70 3145 3145 MS2 32/126 Linfeng_20130204_CTCF_8.raw High GSGGGSSGGSIGGRGSSSGGVK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 392 3.20 0.00 1 5 45 3 584.61365 1751.82639 -0.24 16.16 852 852 MS2 31/84 Linfeng_20130201_rIgG_5.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.20 0.00 0 0 50 3 1104.77563 3312.31235 1.24 27.43 2309 2309 MS2 32/152 Linfeng_20130201_rIgG_2.raw High QISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 421 3.20 0.00 0 4 23 2 858.92932 1716.85137 0.11 39.74 3576 3576 MS2 21/28 Linfeng_20130201_rIgG_8.raw High SLNNQFASFIDK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 371 3.19 0.00 0 5 34 2 692.34906 1383.69084 0.35 50.89 3999 3999 MS2 18/22 Linfeng_20130204_CTCF_3.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 453 3.19 0.00 0 16 50 2 590.30328 1179.59929 -1.00 37.39 2793 2793 MS2 17/18 Linfeng_20130204_CTCF_7.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 14 3.19 0.00 0 0 50 2 1192.47852 2383.94975 -0.93 22.98 1787 1787 MS2 21/60 Linfeng_20130201_rIgG_10.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.19 0.00 0 30 50 3 1104.77917 3312.32297 4.45 25.71 2178 2178 MS2 29/152 Linfeng_20130201_rIgG_7.raw High GSGGGSSGGSIGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 263 3.19 0.00 0 9 50 2 546.75568 1092.50408 1.07 16.07 407 407 MS2 19/26 Linfeng_20130204_CTCF_1.raw High LDSELKNMQDmVEDYR Unambiguous 1 1 P04264 M11(Oxidation) CID 1.0000 0.0000 1 1 160 3.18 0.00 1 14 23 3 667.96741 2001.88767 -0.82 43.49 3449 3449 MS2 25/60 Linfeng_20130204_CTCF_9.raw High NKLNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 552 3.18 0.00 1 21 20 3 533.95007 1599.83567 1.20 45.94 3781 3781 MS2 24/52 Linfeng_20130204_CTCF_2.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 543 3.18 0.00 2 3 50 3 436.88934 1308.65348 -0.63 21.08 1503 1503 MS2 19/36 Linfeng_20130201_rIgG_4.raw High WELLQQVDTSTR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 484 3.18 0.00 0 17 5 2 738.37891 1475.75054 1.08 49.84 4234 4234 MS2 18/22 Linfeng_20130204_CTCF_8.raw High LALDLEIATYR Unambiguous 3 1 P04264 CID 1.0000 0.0000 1 1 310 3.18 0.00 0 0 50 2 639.35754 1277.70781 -1.74 52.83 4551 4551 MS2 18/20 Linfeng_20130204_CTCF_1.raw High TNAENEFVTIK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 465 3.18 0.00 0 7 50 2 633.32184 1265.63640 -0.68 37.33 2787 2787 MS2 15/20 Linfeng_20130204_CTCF_7.raw High TNAENEFVTIKK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 526 3.17 0.00 1 12 50 2 697.36877 1393.73027 -1.41 30.28 2631 2631 MS2 12/22 Linfeng_20130201_rIgG_2.raw High SLNNQFASFIDK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 388 3.17 0.00 0 5 10 2 692.34869 1383.69011 -0.18 50.46 4745 4745 MS2 19/22 Linfeng_20130201_rIgG_2.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 546 3.17 0.00 0 24 50 2 590.30383 1179.60039 -0.07 34.85 3101 3101 MS2 17/18 Linfeng_20130201_rIgG_1.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 15 3.17 0.00 0 0 50 2 1192.48022 2383.95317 0.50 23.35 1324 1324 MS2 19/60 Linfeng_20130204_CTCF_8.raw High QISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 407 3.16 0.00 0 0 9 2 858.92969 1716.85210 0.53 39.98 2857 2857 MS2 22/28 Linfeng_20130204_CTCF_6.raw High LDSELKNMQDmVEDYR Unambiguous 1 1 P04264 M11(Oxidation) CID 1.0000 0.0000 1 1 170 3.16 0.00 1 32 33 3 667.96796 2001.88932 0.00 43.50 4013 4013 MS2 22/60 Linfeng_20130201_rIgG_6.raw High SLDLDSIIAEVK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 474 3.16 0.00 0 46 14 2 651.86102 1302.71477 -0.32 50.68 4850 4850 MS2 19/22 Linfeng_20130201_rIgG_5.raw High SLNNQFASFIDK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 421 3.16 0.00 0 8 35 2 692.34833 1383.68938 -0.71 50.68 4310 4310 MS2 19/22 Linfeng_20130204_CTCF_2.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 551 3.16 0.00 0 30 50 2 590.30389 1179.60051 0.03 35.79 3180 3180 MS2 17/18 Linfeng_20130201_rIgG_3.raw High SLNNQFASFIDK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 417 3.16 0.00 0 8 50 2 692.35193 1383.69658 4.49 50.91 4002 4002 MS2 18/22 Linfeng_20130204_CTCF_4.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.15 0.00 0 1 28 3 1104.77441 3312.30869 0.14 26.30 1732 1732 MS2 29/152 Linfeng_20130204_CTCF_2.raw High LLRDYQELMNTK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 467 3.15 0.00 1 9 31 3 508.60117 1523.78894 0.16 40.72 3674 3674 MS2 20/44 Linfeng_20130201_rIgG_4.raw High QISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 425 3.15 0.00 0 0 50 2 858.93127 1716.85527 2.38 40.02 2866 2866 MS2 21/28 Linfeng_20130204_CTCF_4.raw High GSGGGSSGGSIGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 245 3.15 0.00 0 1 50 2 546.75494 1092.50261 -0.27 16.17 853 853 MS2 21/26 Linfeng_20130201_rIgG_5.raw High SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 474 3.15 0.00 2 9 15 4 626.06775 2501.24917 -1.10 40.48 3662 3662 MS2 35/126 Linfeng_20130201_rIgG_10.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.15 0.00 0 29 50 3 1104.77527 3312.31125 0.91 39.45 2800 2800 MS2 26/152 Linfeng_20130204_CTCF_6.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 3.14 0.00 0 28 50 3 795.32263 2383.95334 0.58 28.16 2404 2404 MS2 28/120 Linfeng_20130201_rIgG_3.raw High LRSEIDNVKK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 353 3.14 0.00 2 0 50 3 401.23523 1201.69114 0.97 18.11 1128 1128 MS2 18/36 Linfeng_20130201_rIgG_3.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 558 3.14 0.00 0 45 50 2 590.30396 1179.60063 0.14 36.05 2462 2462 MS2 17/18 Linfeng_20130204_CTCF_4.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 536 3.14 0.00 0 37 50 2 590.30560 1179.60393 2.93 39.90 2849 2849 MS2 17/18 Linfeng_20130204_CTCF_6.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 573 3.14 0.00 0 31 48 2 590.30359 1179.59990 -0.48 36.41 3210 3210 MS2 17/18 Linfeng_20130201_rIgG_8.raw High mSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 M1(Oxidation); C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 176 3.14 0.00 0 5 50 3 861.05774 2581.15866 -1.22 32.47 2328 2328 MS2 26/100 Linfeng_20130204_CTCF_9.raw High GSGGGSSGGSIGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 259 3.14 0.00 0 0 50 2 546.75482 1092.50237 -0.50 16.15 856 856 MS2 21/26 Linfeng_20130201_rIgG_10.raw High TNAENEFVTIKK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 546 3.13 0.00 1 9 50 2 697.36877 1393.73027 -1.41 32.00 2789 2789 MS2 15/22 Linfeng_20130201_rIgG_4.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 20 3.13 0.00 0 0 50 3 795.32397 2383.95737 2.26 22.85 1736 1736 MS2 27/120 Linfeng_20130201_rIgG_4.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 3.13 0.00 0 0 50 2 1192.48486 2383.96245 4.40 22.84 1778 1778 MS2 19/60 Linfeng_20130201_rIgG_9.raw High WELLQQVDTSTR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 442 3.13 0.00 0 16 0 2 738.37622 1475.74516 -2.56 49.32 4706 4706 MS2 18/22 Linfeng_20130201_rIgG_1.raw High SLNNQFASFIDK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 371 3.13 0.00 0 6 50 2 692.34894 1383.69060 0.17 51.07 4302 4302 MS2 19/22 Linfeng_20130204_CTCF_9.raw High QISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 437 3.13 0.00 0 14 50 2 858.92877 1716.85027 -0.53 40.31 3666 3666 MS2 21/28 Linfeng_20130201_rIgG_1.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.13 0.00 0 60 50 3 1104.77393 3312.30722 -0.30 26.89 2327 2327 MS2 33/152 Linfeng_20130201_rIgG_7.raw High mSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 M1(Oxidation); C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 177 3.12 0.00 0 0 50 3 861.05725 2581.15720 -1.79 33.30 2533 2533 MS2 22/100 Linfeng_20130204_CTCF_1.raw High LDSELKNmQDmVEDYR Unambiguous 1 1 P04264 M8(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 116 3.12 0.00 1 0 50 2 1009.44702 2017.88677 1.26 31.36 2527 2527 MS2 21/30 Linfeng_20130201_rIgG_5.raw High TNAENEFVTIK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 449 3.11 0.00 0 10 50 2 633.32135 1265.63542 -1.45 36.84 2886 2886 MS2 16/20 Linfeng_20130204_CTCF_1.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.11 0.00 0 24 50 3 1104.77332 3312.30539 -0.86 26.63 2221 2221 MS2 38/152 Linfeng_20130201_rIgG_1.raw High TNAENEFVTIKK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 513 3.11 0.00 1 0 50 2 697.36890 1393.73052 -1.23 30.28 2647 2647 MS2 14/22 Linfeng_20130201_rIgG_1.raw High GSGGGSSGGSIGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 261 3.11 0.00 0 0 50 2 546.75427 1092.50127 -1.50 16.13 858 858 MS2 19/26 Linfeng_20130201_rIgG_9.raw High LDSELKNMQDmVEDYR Unambiguous 1 1 P04264 M11(Oxidation) CID 1.0000 0.0000 1 1 172 3.11 0.00 1 34 43 3 667.96826 2001.89023 0.46 43.18 3940 3940 MS2 26/60 Linfeng_20130201_rIgG_3.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 529 3.11 0.00 2 1 50 3 436.88965 1308.65439 0.07 21.08 1536 1536 MS2 20/36 Linfeng_20130201_rIgG_9.raw High LLRDYQELMNTK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 449 3.11 0.00 1 10 50 3 508.60095 1523.78830 -0.26 40.87 3742 3742 MS2 20/44 Linfeng_20130201_rIgG_6.raw High SGYRSGGGFSSGSAGIINYQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 508 3.11 0.00 1 15 50 3 707.67688 2121.01609 2.45 36.92 3389 3389 MS2 29/80 Linfeng_20130201_rIgG_7.raw High LLRDYQELMNTK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 436 3.10 0.00 1 17 50 2 762.39795 1523.78862 -0.05 40.87 3795 3795 MS2 17/22 Linfeng_20130201_rIgG_7.raw High GSGGGSSGGSIGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 246 3.10 0.00 0 0 50 2 546.75513 1092.50298 0.06 16.14 871 871 MS2 19/26 Linfeng_20130201_rIgG_3.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 379 3.10 0.00 0 8 30 3 553.26971 1657.79459 0.99 38.99 2749 2749 MS2 26/64 Linfeng_20130204_CTCF_6.raw High WELLQQVDTSTR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 444 3.10 0.00 0 16 1 2 738.37659 1475.74590 -2.06 50.10 4197 4197 MS2 16/22 Linfeng_20130204_CTCF_9.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 562 3.10 0.00 0 18 50 2 590.30365 1179.60002 -0.38 36.23 2678 2678 MS2 17/18 Linfeng_20130204_CTCF_7.raw High KQISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 573 3.10 0.00 1 14 50 3 615.65326 1844.94522 -0.50 34.91 2569 2569 MS2 21/60 Linfeng_20130204_CTCF_9.raw High LLRDYQELMNTK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 444 3.09 0.00 1 5 22 3 508.60068 1523.78748 -0.80 40.87 3709 3709 MS2 22/44 Linfeng_20130201_rIgG_9.raw High KQISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 570 3.09 0.00 1 26 50 3 615.65314 1844.94486 -0.70 34.24 2626 2626 MS2 22/60 Linfeng_20130204_CTCF_1.raw High SLNNQFASFIDK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 382 3.09 0.00 0 12 18 2 692.34918 1383.69109 0.52 50.76 4824 4824 MS2 19/22 Linfeng_20130201_rIgG_9.raw High LLRDYQELMNTK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 446 3.09 0.00 1 7 50 3 508.60098 1523.78839 -0.20 41.41 3747 3747 MS2 16/44 Linfeng_20130201_rIgG_2.raw High SLDLDSIIAEVK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 431 3.08 0.00 0 12 50 2 651.86395 1302.72063 4.17 52.56 4188 4188 MS2 19/22 Linfeng_20130204_CTCF_6.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 10 3.08 0.00 0 0 50 4 828.83032 3312.29946 -2.65 25.95 2157 2157 MS2 41/228 Linfeng_20130201_rIgG_9.raw High WELLQQVDTSTR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 451 3.08 0.00 0 17 1 2 738.37665 1475.74602 -1.98 49.87 4748 4748 MS2 17/22 Linfeng_20130201_rIgG_6.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 552 3.08 0.00 0 35 50 2 590.30396 1179.60063 0.14 36.10 3205 3205 MS2 17/18 Linfeng_20130201_rIgG_2.raw High GSGGGSSGGSIGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 256 3.08 0.00 0 22 50 2 546.75555 1092.50383 0.84 16.13 858 858 MS2 19/26 Linfeng_20130201_rIgG_8.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 533 3.08 0.00 2 4 50 3 436.88953 1308.65403 -0.21 21.39 1584 1584 MS2 21/36 Linfeng_20130201_rIgG_6.raw High LLRDYQELMNTK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 443 3.08 0.00 1 20 50 2 762.39764 1523.78801 -0.45 40.91 3255 3255 MS2 16/22 Linfeng_20130204_CTCF_2.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.07 0.00 0 0 50 3 1104.77551 3312.31198 1.13 34.28 2268 2268 MS2 28/152 Linfeng_20130204_CTCF_6.raw High KQISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 516 3.07 0.00 1 0 50 2 922.97412 1844.94097 -2.81 35.02 3149 3149 MS2 17/30 Linfeng_20130201_rIgG_6.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 561 3.07 0.00 0 33 50 2 590.30383 1179.60039 -0.07 35.28 3113 3113 MS2 16/18 Linfeng_20130201_rIgG_4.raw High TNAENEFVTIK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 478 3.07 0.00 0 11 50 2 633.32172 1265.63616 -0.87 37.01 2856 2856 MS2 18/20 Linfeng_20130204_CTCF_2.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 449 3.07 0.00 0 47 50 2 590.30353 1179.59978 -0.59 34.89 3085 3085 MS2 17/18 Linfeng_20130201_rIgG_2.raw High SGGGFSSGSAGIINYQRR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 460 3.07 0.00 1 27 50 3 605.30225 1813.89219 -1.03 35.30 3177 3177 MS2 21/68 Linfeng_20130201_rIgG_6.raw High NKLNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 553 3.07 0.00 1 17 11 3 533.94989 1599.83512 0.85 46.05 3509 3509 MS2 26/52 Linfeng_20130204_CTCF_6.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 552 3.06 0.00 0 35 50 2 590.30402 1179.60076 0.24 36.87 3289 3289 MS2 16/18 Linfeng_20130201_rIgG_3.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 562 3.06 0.00 0 47 50 2 590.30377 1179.60027 -0.17 36.22 3208 3208 MS2 17/18 Linfeng_20130201_rIgG_4.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 16 3.06 0.00 0 0 50 3 795.31897 2383.94236 -4.03 22.83 1768 1768 MS2 25/120 Linfeng_20130201_rIgG_10.raw High LDSELKNmQDMVEDYR Unambiguous 1 1 P04264 M8(Oxidation) CID 1.0000 0.0000 1 1 166 3.06 0.00 1 5 50 3 667.96777 2001.88877 -0.27 36.34 2835 2835 MS2 26/60 Linfeng_20130204_CTCF_1.raw High SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 411 3.05 0.00 1 20 50 3 447.56140 1340.66965 0.28 22.54 1740 1740 MS2 22/44 Linfeng_20130201_rIgG_3.raw High SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 484 3.05 0.00 2 22 50 4 626.06732 2501.24746 -1.78 40.91 3182 3182 MS2 35/126 Linfeng_20130204_CTCF_9.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 378 3.05 0.00 0 0 50 3 553.26910 1657.79276 -0.11 38.80 3504 3504 MS2 23/64 Linfeng_20130201_rIgG_1.raw High GSGGGSSGGSIGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 262 3.05 0.00 0 2 50 2 546.75458 1092.50188 -0.95 16.11 867 867 MS2 21/26 Linfeng_20130201_rIgG_2.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 357 3.05 0.00 0 22 50 2 829.39929 1657.79131 -0.99 58.32 5736 5736 MS2 18/32 Linfeng_20130201_rIgG_5.raw High NKLNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 541 3.05 0.00 1 39 18 3 533.94940 1599.83365 -0.06 46.17 3736 3736 MS2 22/52 Linfeng_20130204_CTCF_9.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 3.04 0.00 0 21 50 3 795.32196 2383.95133 -0.27 24.91 2024 2024 MS2 26/120 Linfeng_20130201_rIgG_1.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 565 3.04 0.00 0 36 50 2 590.30402 1179.60076 0.24 35.66 3183 3183 MS2 17/18 Linfeng_20130201_rIgG_1.raw High SLNNQFASFIDK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 418 3.04 0.00 0 15 11 2 692.34808 1383.68889 -1.06 50.41 4816 4816 MS2 19/22 Linfeng_20130201_rIgG_5.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 518 3.04 0.00 0 0 50 2 738.39722 1475.78716 1.24 34.44 2483 2483 MS2 15/22 Linfeng_20130204_CTCF_8.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.03 0.00 0 0 50 3 1104.77612 3312.31382 1.69 27.02 2252 2252 MS2 31/152 Linfeng_20130201_rIgG_4.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 3.03 0.00 0 0 50 2 1192.48059 2383.95391 0.81 24.42 1976 1976 MS2 22/60 Linfeng_20130201_rIgG_9.raw High TNAENEFVTIK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 460 3.03 0.00 0 16 50 2 633.32269 1265.63811 0.67 37.33 2576 2576 MS2 17/20 Linfeng_20130204_CTCF_6.raw High AEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 292 3.03 0.00 0 2 50 2 563.27441 1125.54155 -0.65 24.55 1316 1316 MS2 15/18 Linfeng_20130204_CTCF_6.raw High WELLQQVDTSTR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 456 3.03 0.00 0 19 2 2 738.37769 1475.74809 -0.57 49.62 4219 4219 MS2 18/22 Linfeng_20130204_CTCF_1.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 10 3.02 0.00 0 0 50 3 1104.77112 3312.29880 -2.85 25.60 2083 2083 MS2 30/152 Linfeng_20130201_rIgG_4.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.02 0.00 0 0 50 3 1104.77551 3312.31198 1.13 36.90 2533 2533 MS2 29/152 Linfeng_20130204_CTCF_6.raw High SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 369 3.02 0.00 1 15 50 2 670.83740 1340.66753 -1.31 21.56 1567 1567 MS2 17/22 Linfeng_20130201_rIgG_4.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 3.02 0.00 0 48 50 3 795.32202 2383.95151 -0.19 24.66 1975 1975 MS2 24/120 Linfeng_20130201_rIgG_2.raw High QISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 463 3.02 0.00 0 21 45 3 572.95526 1716.85123 0.03 39.72 3569 3569 MS2 26/56 Linfeng_20130201_rIgG_4.raw High LLRDYQELMNTK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 459 3.02 0.00 1 14 50 3 508.60132 1523.78940 0.46 40.54 3666 3666 MS2 21/44 Linfeng_20130201_rIgG_3.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 502 3.02 0.00 0 34 50 2 590.30530 1179.60332 2.41 41.23 2994 2994 MS2 16/18 Linfeng_20130204_CTCF_6.raw High LLRDYQELMNTK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 436 3.02 0.00 1 18 50 2 762.39734 1523.78740 -0.85 41.35 3227 3227 MS2 15/22 Linfeng_20130204_CTCF_9.raw High WELLQQVDTSTR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 416 3.01 0.00 0 23 9 2 738.37793 1475.74858 -0.24 48.68 3781 3781 MS2 16/22 Linfeng_20130204_CTCF_6.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 3.01 0.00 0 0 50 3 1104.77332 3312.30539 -0.86 25.29 2053 2053 MS2 28/152 Linfeng_20130201_rIgG_2.raw High LLRDYQELMNTK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 447 3.01 0.00 1 6 18 3 508.60043 1523.78675 -1.28 40.78 3697 3697 MS2 21/44 Linfeng_20130201_rIgG_8.raw High TNAENEFVTIKK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 477 3.01 0.00 1 6 50 3 465.24786 1393.72904 -2.29 31.94 2783 2783 MS2 23/44 Linfeng_20130201_rIgG_4.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 22 3.00 0.00 0 25 50 3 795.32635 2383.96451 5.26 33.53 2193 2193 MS2 22/120 Linfeng_20130204_CTCF_6.raw Medium SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 488 3.00 0.00 2 6 9 4 626.06824 2501.25112 -0.32 40.62 3677 3677 MS2 38/126 Linfeng_20130201_rIgG_8.raw High mSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 M1(Oxidation); C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 159 2.99 0.00 0 0 50 3 861.05627 2581.15427 -2.93 33.27 2933 2933 MS2 25/100 Linfeng_20130201_rIgG_10.raw High SGGGFSSGSAGIINYQRR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 459 2.99 0.00 1 37 50 3 605.30225 1813.89219 -1.03 35.50 2412 2412 MS2 20/68 Linfeng_20130204_CTCF_3.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.99 0.00 0 0 50 3 1104.77576 3312.31272 1.35 27.16 2264 2264 MS2 32/152 Linfeng_20130201_rIgG_8.raw High LLRDYQELMNTK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 397 2.98 0.00 1 11 50 2 762.39911 1523.79094 1.47 40.89 3711 3711 MS2 16/22 Linfeng_20130201_rIgG_9.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 519 2.98 0.00 0 50 50 2 590.30475 1179.60222 1.48 35.96 2457 2457 MS2 15/18 Linfeng_20130204_CTCF_3.raw High GSGGGSSGGSIGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 256 2.98 0.00 0 9 50 2 546.75458 1092.50188 -0.95 16.12 867 867 MS2 22/26 Linfeng_20130201_rIgG_1.raw High LALDLEIATYR Unambiguous 3 1 P04264 CID 1.0000 0.0000 1 1 319 2.97 0.00 0 17 50 2 639.35742 1277.70757 -1.93 57.72 5127 5127 MS2 15/20 Linfeng_20130204_CTCF_1.raw Medium SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 502 2.97 0.00 2 10 21 4 626.06934 2501.25551 1.44 40.70 2935 2935 MS2 30/126 Linfeng_20130204_CTCF_6.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 563 2.97 0.00 0 50 50 2 590.30402 1179.60076 0.24 35.86 3203 3203 MS2 16/18 Linfeng_20130201_rIgG_1.raw Medium SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 501 2.97 0.00 2 2 5 4 626.06885 2501.25356 0.66 40.74 3781 3781 MS2 36/126 Linfeng_20130201_rIgG_7.raw High LDSELKNMQDmVEDYR Unambiguous 1 1 P04264 M11(Oxidation) CID 1.0000 0.0000 1 1 196 2.97 0.00 1 5 9 3 667.96918 2001.89298 1.83 43.49 3232 3232 MS2 25/60 Linfeng_20130204_CTCF_6.raw High NMQDMVEDYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 57 2.97 0.00 0 20 20 2 650.76965 1300.53203 1.78 39.37 3532 3532 MS2 15/18 Linfeng_20130201_rIgG_4.raw High SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 431 2.96 0.00 1 38 50 3 447.56085 1340.66800 -0.95 21.30 1549 1549 MS2 17/44 Linfeng_20130201_rIgG_1.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 12 2.96 0.00 0 0 50 2 1192.47595 2383.94463 -3.08 29.47 2342 2342 MS2 22/60 Linfeng_20130201_rIgG_5.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.96 0.00 0 2 50 3 1104.77625 3312.31418 1.80 26.55 1761 1761 MS2 29/152 Linfeng_20130204_CTCF_2.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 18 2.96 0.00 0 21 50 3 795.32294 2383.95426 0.96 24.39 1959 1959 MS2 26/120 Linfeng_20130201_rIgG_10.raw High SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 444 2.95 0.00 1 20 50 3 447.56107 1340.66864 -0.48 22.24 1670 1670 MS2 22/44 Linfeng_20130201_rIgG_2.raw High AEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 495 2.95 0.00 1 20 50 3 762.71436 2286.12851 1.58 43.41 3216 3216 MS2 22/76 Linfeng_20130204_CTCF_3.raw High mSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 M1(Oxidation); C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 172 2.95 0.00 0 0 50 3 861.05841 2581.16068 -0.44 32.38 2106 2106 MS2 23/100 Linfeng_20130204_CTCF_3.raw High TNAENEFVTIKK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 532 2.94 0.00 1 0 50 2 697.36914 1393.73100 -0.88 32.06 2857 2857 MS2 13/22 Linfeng_20130201_rIgG_6.raw High SLDLDSIIAEVK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 566 2.94 0.00 0 19 50 2 651.86047 1302.71367 -1.17 50.81 4822 4822 MS2 19/22 Linfeng_20130201_rIgG_10.raw Medium GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.94 0.00 0 0 50 4 828.83429 3312.31533 2.14 25.65 2092 2092 MS2 38/228 Linfeng_20130201_rIgG_2.raw High NKLNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 492 2.93 0.00 1 26 20 3 533.95026 1599.83622 1.54 46.06 3700 3700 MS2 21/52 Linfeng_20130204_CTCF_7.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.93 0.00 0 78 50 3 1104.77417 3312.30796 -0.08 26.26 2178 2178 MS2 29/152 Linfeng_20130201_rIgG_1.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 448 2.93 0.00 0 46 50 2 590.30353 1179.59978 -0.59 35.23 3124 3124 MS2 17/18 Linfeng_20130201_rIgG_3.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 485 2.92 0.00 0 41 50 2 590.30524 1179.60320 2.31 36.93 3312 3312 MS2 17/18 Linfeng_20130201_rIgG_1.raw High LLRDYQELMNTK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 455 2.92 0.00 1 11 6 3 508.60318 1523.79499 4.12 40.99 2968 2968 MS2 21/44 Linfeng_20130204_CTCF_6.raw High SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 388 2.92 0.00 1 10 50 2 670.83716 1340.66704 -1.67 21.62 1598 1598 MS2 17/22 Linfeng_20130201_rIgG_8.raw High LDSELKNmQDmVEDYR Unambiguous 1 1 P04264 M8(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 131 2.92 0.00 1 31 50 3 673.29858 2017.88120 -1.50 31.44 2185 2185 MS2 21/60 Linfeng_20130204_CTCF_8.raw High TNAENEFVTIKK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 549 2.91 0.00 1 9 50 3 465.24847 1393.73087 -0.98 32.02 2904 2904 MS2 17/44 Linfeng_20130201_rIgG_7.raw High LDSELKNmQDmVEDYR Unambiguous 1 1 P04264 M8(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 113 2.91 0.00 1 0 50 2 1009.44495 2017.88262 -0.80 31.66 2207 2207 MS2 17/30 Linfeng_20130204_CTCF_8.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 2.91 0.00 0 40 50 2 1192.48120 2383.95513 1.32 59.67 5023 5023 MS2 17/60 Linfeng_20130204_CTCF_6.raw High TNAENEFVTIKK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 482 2.91 0.00 1 12 50 2 697.36981 1393.73235 0.08 30.59 2664 2664 MS2 16/22 Linfeng_20130201_rIgG_3.raw High LDSELKNMQDmVEDYR Unambiguous 1 1 P04264 M11(Oxidation) CID 1.0000 0.0000 1 1 158 2.91 0.00 1 32 50 3 667.96643 2001.88474 -2.29 43.19 3944 3944 MS2 28/60 Linfeng_20130201_rIgG_10.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 20 2.91 0.00 0 0 50 3 795.32404 2383.95755 2.34 23.81 1431 1431 MS2 25/120 Linfeng_20130204_CTCF_2.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.91 0.00 0 0 50 3 1104.77576 3312.31272 1.35 26.72 2231 2231 MS2 28/152 Linfeng_20130201_rIgG_1.raw High SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 383 2.91 0.00 1 6 50 2 670.83875 1340.67021 0.70 21.79 1641 1641 MS2 18/22 Linfeng_20130201_rIgG_6.raw High LDSELKNmQDmVEDYR Unambiguous 1 1 P04264 M8(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 130 2.90 0.00 1 0 50 2 1009.44708 2017.88689 1.32 31.35 2754 2754 MS2 18/30 Linfeng_20130201_rIgG_9.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.90 0.00 0 0 50 3 1104.77527 3312.31125 0.91 26.93 1805 1805 MS2 26/152 Linfeng_20130204_CTCF_2.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 14 2.90 0.00 0 22 50 3 795.32098 2383.94840 -1.50 28.49 2441 2441 MS2 26/120 Linfeng_20130201_rIgG_3.raw High QISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 464 2.90 0.00 0 17 50 3 572.95551 1716.85196 0.46 39.49 3156 3156 MS2 22/56 Linfeng_20130204_CTCF_1.raw High LDSELKNmQDmVEDYR Unambiguous 1 1 P04264 M8(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 115 2.90 0.00 1 0 50 2 1009.44550 2017.88371 -0.26 31.41 2706 2706 MS2 22/30 Linfeng_20130201_rIgG_8.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.89 0.00 0 0 50 3 1104.77588 3312.31308 1.46 35.41 2381 2381 MS2 22/152 Linfeng_20130204_CTCF_6.raw High SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 372 2.89 0.00 1 14 50 2 670.83868 1340.67009 0.60 22.61 1121 1121 MS2 15/22 Linfeng_20130204_CTCF_6.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 470 2.89 0.00 0 28 50 2 590.30286 1179.59844 -1.73 36.06 3220 3220 MS2 15/18 Linfeng_20130201_rIgG_9.raw High TNAENEFVTIKK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 496 2.89 0.00 1 0 50 2 697.36957 1393.73186 -0.27 32.06 2908 2908 MS2 14/22 Linfeng_20130201_rIgG_7.raw High GGSGGGGGGSSGGRGSGGGSSGGSIGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 151 2.89 0.00 1 36 50 3 693.97559 2079.91220 -1.26 15.81 359 359 MS2 23/108 Linfeng_20130204_CTCF_6.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 18 2.89 0.00 0 0 50 3 795.32172 2383.95060 -0.58 22.95 1773 1773 MS2 26/120 Linfeng_20130201_rIgG_8.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.89 0.00 0 0 50 3 1104.77393 3312.30722 -0.30 27.94 2381 2381 MS2 31/152 Linfeng_20130201_rIgG_10.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.88 0.00 0 0 50 3 1104.77502 3312.31052 0.69 27.01 2298 2298 MS2 23/152 Linfeng_20130201_rIgG_6.raw High TNAENEFVTIK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 463 2.88 0.00 0 9 50 2 633.32178 1265.63628 -0.78 36.70 3288 3288 MS2 16/20 Linfeng_20130201_rIgG_1.raw High GSGGGSSGGSIGGRGSSSGGVK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 379 2.88 0.00 1 4 50 3 584.61395 1751.82730 0.29 16.18 873 873 MS2 34/84 Linfeng_20130201_rIgG_1.raw High LDSELKNmQDmVEDYR Unambiguous 1 1 P04264 M8(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 125 2.88 0.00 1 0 50 2 1009.44708 2017.88689 1.32 31.46 2799 2799 MS2 20/30 Linfeng_20130201_rIgG_6.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.88 0.00 0 0 50 3 1104.77441 3312.30869 0.14 26.30 1658 1658 MS2 35/152 Linfeng_20130204_CTCF_8.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.87 0.00 0 0 50 3 1104.77478 3312.30979 0.47 37.25 2567 2567 MS2 28/152 Linfeng_20130204_CTCF_6.raw High SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 388 2.87 0.00 1 0 50 2 670.83777 1340.66826 -0.76 22.62 1732 1732 MS2 17/22 Linfeng_20130201_rIgG_8.raw High TNAENEFVTIK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 492 2.87 0.00 0 11 50 2 633.32153 1265.63579 -1.16 37.14 3327 3327 MS2 16/20 Linfeng_20130201_rIgG_9.raw High AQYEDIAQK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 319 2.86 0.00 0 0 50 2 533.26447 1065.52165 0.47 24.79 1339 1339 MS2 13/16 Linfeng_20130204_CTCF_6.raw Medium SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 488 2.86 0.00 2 38 50 4 626.06824 2501.25112 -0.32 40.84 2950 2950 MS2 29/126 Linfeng_20130204_CTCF_4.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.86 0.00 0 0 50 3 1104.77527 3312.31125 0.91 28.30 2459 2459 MS2 31/152 Linfeng_20130201_rIgG_6.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 22 2.86 0.00 0 0 50 3 795.32623 2383.96415 5.11 22.73 1749 1749 MS2 28/120 Linfeng_20130201_rIgG_1.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 13 2.86 0.00 0 0 50 2 1192.48096 2383.95464 1.12 25.57 2105 2105 MS2 24/60 Linfeng_20130201_rIgG_3.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.85 0.00 0 0 50 3 1104.77380 3312.30686 -0.41 29.12 2492 2492 MS2 29/152 Linfeng_20130201_rIgG_4.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 14 2.85 0.00 0 69 50 3 795.32098 2383.94840 -1.50 28.99 2494 2494 MS2 26/120 Linfeng_20130201_rIgG_3.raw High LDSELKNMQDMVEDYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 211 2.85 0.00 1 15 50 3 662.63702 1985.89652 1.07 50.68 3995 3995 MS2 21/60 Linfeng_20130204_CTCF_6.raw High GGSGGGGGGSSGGRGSGGGSSGGSIGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 167 2.85 0.00 1 0 50 2 1040.46484 2079.92241 3.65 15.80 818 818 MS2 15/54 Linfeng_20130201_rIgG_8.raw High SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 387 2.85 0.00 1 69 50 2 670.83887 1340.67046 0.88 22.58 1767 1767 MS2 17/22 Linfeng_20130201_rIgG_7.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.84 0.00 0 0 50 3 1104.77502 3312.31052 0.69 26.60 2202 2202 MS2 32/152 Linfeng_20130201_rIgG_8.raw Medium SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 494 2.84 0.00 2 0 4 4 626.06897 2501.25405 0.85 40.97 3161 3161 MS2 23/126 Linfeng_20130204_CTCF_7.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 2.84 0.00 0 27 50 3 795.32257 2383.95316 0.50 40.26 2887 2887 MS2 26/120 Linfeng_20130204_CTCF_6.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 448 2.83 0.00 0 43 50 2 590.30341 1179.59953 -0.79 36.24 3270 3270 MS2 17/18 Linfeng_20130201_rIgG_6.raw High GGSGGGGGGSSGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 88 2.83 0.00 0 34 50 2 503.71863 1006.42998 0.23 15.13 286 286 MS2 17/26 Linfeng_20130204_CTCF_6.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 571 2.83 0.00 0 51 50 2 590.30414 1179.60100 0.45 35.85 3003 3003 MS2 17/18 Linfeng_20130201_rIgG_5.raw High AEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 281 2.82 0.00 0 28 50 2 563.27460 1125.54192 -0.32 25.06 2044 2044 MS2 15/18 Linfeng_20130201_rIgG_1.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.82 0.00 0 1 50 3 1104.77380 3312.30686 -0.41 26.49 1678 1678 MS2 32/152 Linfeng_20130204_CTCF_8.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 20 2.82 0.00 0 11 50 3 795.32501 2383.96048 3.57 28.32 2423 2423 MS2 27/120 Linfeng_20130201_rIgG_3.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.82 0.00 0 77 50 3 1104.77490 3312.31015 0.58 26.93 2288 2288 MS2 28/152 Linfeng_20130201_rIgG_6.raw High SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 420 2.82 0.00 1 37 50 3 447.56119 1340.66901 -0.20 22.53 1631 1631 MS2 20/44 Linfeng_20130201_rIgG_5.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 2.81 0.00 0 0 50 2 1192.48328 2383.95928 3.06 23.48 1168 1168 MS2 22/60 Linfeng_20130204_CTCF_3.raw High TNAENEFVTIK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 476 2.81 0.00 0 11 50 2 633.32214 1265.63701 -0.20 36.95 3281 3281 MS2 17/20 Linfeng_20130201_rIgG_4.raw High GSGGGSSGGSIGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 243 2.81 0.00 0 10 50 2 546.75507 1092.50286 -0.05 16.12 844 844 MS2 20/26 Linfeng_20130201_rIgG_4.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.81 0.00 0 0 50 3 1104.77295 3312.30429 -1.19 28.70 2465 2465 MS2 35/152 Linfeng_20130201_rIgG_2.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.81 0.00 0 7 50 2 1192.48022 2383.95317 0.50 23.29 1298 1298 MS2 17/60 Linfeng_20130204_CTCF_9.raw High LLRDYQELMNTK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 470 2.80 0.00 1 13 49 3 508.60028 1523.78629 -1.58 41.23 3289 3289 MS2 14/44 Linfeng_20130204_CTCF_2.raw High LDSELKNmQDmVEDYR Unambiguous 1 1 P04264 M8(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 128 2.80 0.00 1 0 50 2 1009.44763 2017.88799 1.86 31.47 2851 2851 MS2 15/30 Linfeng_20130201_rIgG_7.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 14 2.80 0.00 0 0 50 3 795.32104 2383.94858 -1.42 28.70 2462 2462 MS2 24/120 Linfeng_20130201_rIgG_3.raw High SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 418 2.80 0.00 1 48 50 3 447.56079 1340.66782 -1.09 21.80 1642 1642 MS2 16/44 Linfeng_20130201_rIgG_6.raw High NmQDmVEDYR Unambiguous 1 1 P04264 M2(Oxidation); M5(Oxidation) CID 1.0000 0.0000 1 1 22 2.79 0.00 0 15 50 2 666.76294 1332.51860 -0.70 23.24 1816 1816 MS2 15/18 Linfeng_20130201_rIgG_1.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.79 0.00 0 0 50 3 1104.77527 3312.31125 0.91 31.29 2748 2748 MS2 32/152 Linfeng_20130201_rIgG_9.raw High NmQDmVEDYR Unambiguous 1 1 P04264 M2(Oxidation); M5(Oxidation) CID 1.0000 0.0000 1 1 21 2.79 0.00 0 67 50 2 666.76416 1332.52104 1.13 23.97 1472 1472 MS2 13/18 Linfeng_20130204_CTCF_1.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 14 2.79 0.00 0 14 50 3 795.31976 2383.94474 -3.03 26.88 2238 2238 MS2 24/120 Linfeng_20130201_rIgG_2.raw High TNAENEFVTIK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 494 2.79 0.00 0 20 50 2 633.32434 1265.64141 3.27 36.94 3296 3296 MS2 14/20 Linfeng_20130201_rIgG_3.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.79 0.00 0 7 50 3 1104.77417 3312.30796 -0.08 29.02 2514 2514 MS2 29/152 Linfeng_20130201_rIgG_10.raw High LLRDYQELMNTK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 484 2.79 0.00 1 3 13 3 508.60019 1523.78601 -1.76 40.98 3263 3263 MS2 20/44 Linfeng_20130204_CTCF_2.raw High NMQDMVEDYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 54 2.78 0.00 0 56 50 2 650.76947 1300.53166 1.50 39.38 3535 3535 MS2 15/18 Linfeng_20130201_rIgG_8.raw High NmQDmVEDYR Unambiguous 1 1 P04264 M2(Oxidation); M5(Oxidation) CID 1.0000 0.0000 1 1 21 2.78 0.00 0 0 50 2 666.76447 1332.52165 1.59 24.96 2004 2004 MS2 15/18 Linfeng_20130201_rIgG_4.raw High SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 432 2.78 0.00 1 13 50 2 670.83936 1340.67143 1.61 22.98 1286 1286 MS2 18/22 Linfeng_20130204_CTCF_7.raw High NMQDMVEDYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 56 2.77 0.00 0 41 50 2 650.77081 1300.53435 3.57 39.05 3111 3111 MS2 15/18 Linfeng_20130204_CTCF_1.raw High SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 408 2.77 0.00 1 0 50 2 670.83771 1340.66814 -0.85 22.50 1279 1279 MS2 17/22 Linfeng_20130204_CTCF_1.raw High NMQDMVEDYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 57 2.77 0.00 0 43 35 2 650.76917 1300.53105 1.03 39.24 3532 3532 MS2 15/18 Linfeng_20130201_rIgG_3.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 2.77 0.00 0 0 50 3 795.32269 2383.95353 0.65 24.89 2035 2035 MS2 28/120 Linfeng_20130201_rIgG_9.raw High LDSELKNmQDmVEDYR Unambiguous 1 1 P04264 M8(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 119 2.76 0.00 1 52 50 2 1009.44366 2017.88005 -2.07 31.10 2310 2310 MS2 16/30 Linfeng_20130204_CTCF_1.raw High WELLQQVDTSTR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 488 2.76 0.00 0 17 2 2 738.37921 1475.75115 1.49 50.05 4770 4770 MS2 18/22 Linfeng_20130201_rIgG_6.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 14 2.76 0.00 0 74 50 2 1192.48083 2383.95439 1.02 60.67 5125 5125 MS2 19/60 Linfeng_20130204_CTCF_6.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.76 0.00 0 6 50 3 1104.77197 3312.30136 -2.07 27.75 2391 2391 MS2 25/152 Linfeng_20130201_rIgG_6.raw High IEISELNR Unambiguous 2 2 P35908;P04264 CID 1.0000 0.0000 1 1 527 2.75 0.00 0 13 50 2 487.26889 973.53050 -0.85 34.08 3025 3025 MS2 13/14 Linfeng_20130201_rIgG_1.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.75 0.00 0 0 50 3 1104.77527 3312.31125 0.91 27.12 2310 2310 MS2 32/152 Linfeng_20130201_rIgG_6.raw High QISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 528 2.75 0.00 0 15 50 3 572.95618 1716.85398 1.63 40.04 2868 2868 MS2 19/56 Linfeng_20130204_CTCF_4.raw High SLDLDSIIAEVK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 458 2.75 0.00 0 0 4 2 651.86243 1302.71758 1.83 52.50 5080 5080 MS2 16/22 Linfeng_20130201_rIgG_1.raw High SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 420 2.75 0.00 1 72 50 3 447.56122 1340.66910 -0.13 22.36 1701 1701 MS2 18/44 Linfeng_20130201_rIgG_1.raw High SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 419 2.75 0.00 1 15 50 2 670.83923 1340.67119 1.42 21.61 1612 1612 MS2 15/22 Linfeng_20130201_rIgG_3.raw High mSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 M1(Oxidation); C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 215 2.74 0.00 0 0 50 3 861.06128 2581.16928 2.89 32.44 2109 2109 MS2 28/100 Linfeng_20130204_CTCF_4.raw High NMQDMVEDYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 56 2.74 0.00 0 25 35 2 650.76892 1300.53057 0.66 40.18 2879 2879 MS2 15/18 Linfeng_20130204_CTCF_6.raw High LRSEIDNVKK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 417 2.74 0.00 2 10 50 3 401.23441 1201.68866 -1.09 18.20 1153 1153 MS2 16/36 Linfeng_20130201_rIgG_7.raw High TNAENEFVTIKK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 530 2.73 0.00 1 0 50 2 697.36926 1393.73125 -0.70 32.14 2777 2777 MS2 13/22 Linfeng_20130201_rIgG_8.raw High GSGGGSSGGSIGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 255 2.73 0.00 0 10 50 2 546.75543 1092.50359 0.62 16.16 868 868 MS2 22/26 Linfeng_20130201_rIgG_7.raw High DYQELMNTK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 220 2.73 0.00 0 30 50 2 571.26202 1141.51677 -2.34 34.38 2640 2640 MS2 13/16 Linfeng_20130204_CTCF_1.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 16 2.72 0.00 0 0 50 2 1192.47986 2383.95244 0.20 28.58 2254 2254 MS2 22/60 Linfeng_20130201_rIgG_5.raw High TNAENEFVTIKK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 498 2.72 0.00 1 6 50 3 465.24933 1393.73343 0.86 32.19 2057 2057 MS2 19/44 Linfeng_20130204_CTCF_6.raw High LDSELKNmQDmVEDYR Unambiguous 1 1 P04264 M8(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 126 2.72 0.00 1 0 50 2 1009.44452 2017.88176 -1.22 31.46 2228 2228 MS2 17/30 Linfeng_20130204_CTCF_9.raw High TNAENEFVTIKK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 544 2.72 0.00 1 6 50 3 465.24826 1393.73023 -1.44 31.99 2850 2850 MS2 18/44 Linfeng_20130201_rIgG_6.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 508 2.72 0.00 0 53 50 2 590.30420 1179.60112 0.55 35.37 2950 2950 MS2 17/18 Linfeng_20130201_rIgG_5.raw High LLRDYQELMNTK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 448 2.72 0.00 1 15 50 3 508.60092 1523.78821 -0.32 42.09 3084 3084 MS2 17/44 Linfeng_20130204_CTCF_6.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 18 2.72 0.00 0 0 50 2 1192.48425 2383.96123 3.88 24.00 1223 1223 MS2 21/60 Linfeng_20130204_CTCF_3.raw High TNAENEFVTIK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 478 2.72 0.00 0 14 50 2 633.32184 1265.63640 -0.68 36.66 3261 3261 MS2 14/20 Linfeng_20130201_rIgG_2.raw High SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 357 2.71 0.00 1 13 50 2 670.83862 1340.66997 0.51 21.68 1533 1533 MS2 13/22 Linfeng_20130201_rIgG_5.raw High IEISELNR Unambiguous 2 2 P35908;P04264 CID 1.0000 0.0000 1 1 539 2.71 0.00 0 26 50 2 487.26892 973.53057 -0.79 34.49 3051 3051 MS2 13/14 Linfeng_20130201_rIgG_3.raw High NMQDMVEDYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 55 2.71 0.00 0 30 50 2 650.76892 1300.53057 0.66 39.72 3059 3059 MS2 15/18 Linfeng_20130204_CTCF_9.raw High TNAENEFVTIK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 479 2.71 0.00 0 13 50 2 633.32257 1265.63786 0.48 37.23 3369 3369 MS2 16/20 Linfeng_20130201_rIgG_6.raw High AEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 289 2.71 0.00 0 12 50 2 563.27374 1125.54021 -1.84 25.50 1409 1409 MS2 15/18 Linfeng_20130204_CTCF_6.raw High SGGGFSSGSAGIINYQRR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 457 2.71 0.00 1 24 50 3 605.30225 1813.89219 -1.03 35.03 2704 2704 MS2 21/68 Linfeng_20130204_CTCF_1.raw High NMQDMVEDYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 54 2.71 0.00 0 39 50 2 650.77051 1300.53374 3.10 39.86 3047 3047 MS2 15/18 Linfeng_20130204_CTCF_7.raw High LDSELKNmQDmVEDYR Unambiguous 1 1 P04264 M8(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 113 2.70 0.00 1 0 50 2 1009.44641 2017.88555 0.65 31.78 2198 2198 MS2 16/30 Linfeng_20130204_CTCF_10.raw High NmQDmVEDYR Unambiguous 1 1 P04264 M2(Oxidation); M5(Oxidation) CID 1.0000 0.0000 1 1 21 2.70 0.00 0 12 50 2 666.76373 1332.52019 0.49 24.92 2025 2025 MS2 13/18 Linfeng_20130201_rIgG_1.raw High LALDLEIATYR Unambiguous 3 1 P04264 CID 1.0000 0.0000 1 1 294 2.70 0.00 0 0 50 2 639.35907 1277.71086 0.65 52.86 4217 4217 MS2 16/20 Linfeng_20130204_CTCF_6.raw High IEISELNR Unambiguous 2 2 P35908;P04264 CID 1.0000 0.0000 1 1 561 2.70 0.00 0 9 50 2 487.26840 973.52953 -1.85 34.32 2634 2634 MS2 12/14 Linfeng_20130204_CTCF_1.raw High SLNNQFASFIDKVR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 475 2.69 0.00 1 0 50 2 819.93402 1638.86077 0.53 53.42 4274 4274 MS2 13/26 Linfeng_20130204_CTCF_6.raw High SLVNLGGSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 568 2.69 0.00 0 0 50 2 437.75305 874.49883 -0.54 32.06 2597 2597 MS2 14/16 Linfeng_20130201_rIgG_5.raw High DYQELMNTK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 204 2.69 0.00 0 36 50 2 571.26312 1141.51897 -0.41 34.98 2357 2357 MS2 13/16 Linfeng_20130204_CTCF_4.raw High KQISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 578 2.69 0.00 1 9 50 3 615.65381 1844.94687 0.39 34.92 2356 2356 MS2 20/60 Linfeng_20130204_CTCF_3.raw High SLDLDSIIAEVK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 483 2.69 0.00 0 0 7 2 651.85950 1302.71172 -2.67 52.55 4989 4989 MS2 16/22 Linfeng_20130201_rIgG_3.raw High LDSELKNmQDMVEDYR Unambiguous 1 1 P04264 M8(Oxidation) CID 1.0000 0.0000 1 1 196 2.68 0.00 1 0 50 3 667.96936 2001.89353 2.10 36.78 2733 2733 MS2 24/60 Linfeng_20130204_CTCF_7.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.68 0.00 0 0 50 3 1104.77795 3312.31931 3.34 29.42 2556 2556 MS2 25/152 Linfeng_20130201_rIgG_10.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 445 2.67 0.00 0 34 50 2 590.30347 1179.59966 -0.69 36.32 3245 3245 MS2 16/18 Linfeng_20130201_rIgG_9.raw High LLRDYQELMNTK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 445 2.67 0.00 1 6 50 3 508.60040 1523.78666 -1.34 41.10 2976 2976 MS2 18/44 Linfeng_20130204_CTCF_4.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 565 2.67 0.00 0 41 50 2 590.30402 1179.60076 0.24 35.99 3245 3245 MS2 17/18 Linfeng_20130201_rIgG_6.raw High QISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 525 2.66 0.00 0 6 14 3 572.95630 1716.85434 1.84 40.10 3098 3098 MS2 20/56 Linfeng_20130204_CTCF_9.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.66 0.00 0 19 50 3 1104.77637 3312.31455 1.91 28.16 2382 2382 MS2 22/152 Linfeng_20130201_rIgG_8.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.66 0.00 0 1 50 3 1104.77576 3312.31272 1.35 26.40 1669 1669 MS2 28/152 Linfeng_20130204_CTCF_8.raw High LLRDYQELMNTK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 477 2.66 0.00 1 10 50 3 508.60022 1523.78611 -1.70 41.24 3216 3216 MS2 18/44 Linfeng_20130204_CTCF_9.raw High NMQDMVEDYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 49 2.66 0.00 0 40 50 2 650.76752 1300.52776 -1.50 38.71 3477 3477 MS2 15/18 Linfeng_20130201_rIgG_10.raw High TNAENEFVTIKK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 519 2.66 0.00 1 0 50 2 697.36890 1393.73052 -1.23 30.60 2653 2653 MS2 14/22 Linfeng_20130201_rIgG_4.raw High DYQELMNTK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 249 2.66 0.00 0 43 50 2 571.26337 1141.51946 0.01 34.71 2335 2335 MS2 13/16 Linfeng_20130204_CTCF_3.raw High QISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 421 2.65 0.00 0 7 50 2 858.92926 1716.85124 0.04 41.81 3799 3799 MS2 18/28 Linfeng_20130201_rIgG_3.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.65 0.00 0 0 50 3 1104.77625 3312.31418 1.80 27.92 2366 2366 MS2 30/152 Linfeng_20130201_rIgG_4.raw High TNAENEFVTIK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 472 2.64 0.00 0 22 50 2 633.32257 1265.63786 0.48 38.13 3432 3432 MS2 16/20 Linfeng_20130201_rIgG_1.raw High LDSELKNMQDmVEDYR Unambiguous 1 1 P04264 M11(Oxidation) CID 1.0000 0.0000 1 1 172 2.64 0.00 1 20 45 3 667.96838 2001.89060 0.64 43.64 3439 3439 MS2 24/60 Linfeng_20130204_CTCF_7.raw High LRSEIDNVKK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 418 2.64 0.00 2 20 50 3 401.23444 1201.68875 -1.01 19.16 1275 1275 MS2 16/36 Linfeng_20130201_rIgG_3.raw High LALDLEIATYR Unambiguous 3 1 P04264 CID 1.0000 0.0000 1 1 321 2.63 0.00 0 0 50 2 639.35999 1277.71269 2.08 52.62 4194 4194 MS2 16/20 Linfeng_20130204_CTCF_6.raw Medium SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 494 2.63 0.00 2 34 50 4 626.06897 2501.25405 0.85 43.22 3203 3203 MS2 23/126 Linfeng_20130204_CTCF_6.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 377 2.63 0.00 0 17 50 3 553.26917 1657.79294 0.00 38.74 3473 3473 MS2 22/64 Linfeng_20130201_rIgG_2.raw High TNAENEFVTIKK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 499 2.63 0.00 1 4 50 3 465.24930 1393.73334 0.80 31.05 1945 1945 MS2 17/44 Linfeng_20130204_CTCF_6.raw High NMQDMVEDYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 57 2.63 0.00 0 45 50 2 650.76965 1300.53203 1.78 39.44 3647 3647 MS2 15/18 Linfeng_20130201_rIgG_7.raw High NmQDmVEDYR Unambiguous 1 1 P04264 M2(Oxidation); M5(Oxidation) CID 1.0000 0.0000 1 1 21 2.63 0.00 0 24 50 2 666.76367 1332.52007 0.39 24.24 1961 1961 MS2 12/18 Linfeng_20130201_rIgG_6.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 18 2.63 0.00 0 52 50 3 795.32349 2383.95591 1.65 59.24 4980 4980 MS2 22/120 Linfeng_20130204_CTCF_6.raw High IEISELNR Unambiguous 2 2 P35908;P04264 CID 1.0000 0.0000 1 1 525 2.62 0.00 0 24 50 2 487.26898 973.53069 -0.66 35.87 3172 3172 MS2 13/14 Linfeng_20130201_rIgG_4.raw High TNAENEFVTIK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 481 2.62 0.00 0 16 50 2 633.32227 1265.63725 -0.01 37.14 3411 3411 MS2 16/20 Linfeng_20130201_rIgG_7.raw Medium SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 494 2.61 0.00 2 0 10 4 626.06897 2501.25405 0.85 41.10 3152 3152 MS2 28/126 Linfeng_20130204_CTCF_10.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 11 2.60 0.00 0 58 50 2 1192.47400 2383.94072 -4.72 24.88 2020 2020 MS2 20/60 Linfeng_20130201_rIgG_1.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 10 2.60 0.00 0 0 50 3 1104.76831 3312.29038 -5.39 29.12 2509 2509 MS2 30/152 Linfeng_20130201_rIgG_2.raw High TNAENEFVTIKK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 546 2.60 0.00 1 33 50 3 465.24814 1393.72986 -1.70 30.78 2471 2471 MS2 17/44 Linfeng_20130201_rIgG_5.raw High NKLNDLEDALQQAKEDLAR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 498 2.60 0.00 2 30 50 3 728.71112 2184.11881 -3.11 59.69 5852 5852 MS2 19/72 Linfeng_20130201_rIgG_10.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.60 0.00 0 12 50 3 1104.77539 3312.31162 1.02 27.90 2461 2461 MS2 30/152 Linfeng_20130201_rIgG_7.raw High IEISELNR Unambiguous 2 2 P35908;P04264 CID 1.0000 0.0000 1 1 544 2.59 0.00 0 14 50 2 487.26910 973.53093 -0.41 35.55 2755 2755 MS2 13/14 Linfeng_20130204_CTCF_1.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 563 2.59 0.00 0 64 50 2 590.30414 1179.60100 0.45 35.40 3187 3187 MS2 17/18 Linfeng_20130201_rIgG_6.raw High IEISELNR Unambiguous 2 2 P35908;P04264 CID 1.0000 0.0000 1 1 454 2.59 0.00 0 10 50 2 487.26923 973.53118 -0.16 34.44 3029 3029 MS2 13/14 Linfeng_20130201_rIgG_4.raw High NmQDmVEDYR Unambiguous 1 1 P04264 M2(Oxidation); M5(Oxidation) CID 1.0000 0.0000 1 1 20 2.59 0.00 0 5 50 2 666.76373 1332.52019 0.49 24.97 2035 2035 MS2 14/18 Linfeng_20130201_rIgG_3.raw High LDSELKNmQDmVEDYR Unambiguous 1 1 P04264 M8(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 118 2.58 0.00 1 0 50 2 1009.44525 2017.88323 -0.50 31.03 2722 2722 MS2 16/30 Linfeng_20130201_rIgG_1.raw High SGGGFSSGSAGIINYQRR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 455 2.58 0.00 1 11 50 3 605.30176 1813.89072 -1.84 35.24 2681 2681 MS2 23/68 Linfeng_20130204_CTCF_2.raw High SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 415 2.57 0.00 1 34 50 3 447.56082 1340.66791 -1.02 21.59 1602 1602 MS2 17/44 Linfeng_20130201_rIgG_10.raw High TNAENEFVTIK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 468 2.57 0.00 0 13 50 2 633.32092 1265.63457 -2.13 36.99 3302 3302 MS2 15/20 Linfeng_20130201_rIgG_10.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 14 2.57 0.00 0 60 50 3 795.32092 2383.94822 -1.58 23.05 1810 1810 MS2 23/120 Linfeng_20130201_rIgG_6.raw High NMQDMVEDYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 56 2.57 0.00 0 39 50 2 650.76904 1300.53081 0.84 39.54 2820 2820 MS2 15/18 Linfeng_20130204_CTCF_3.raw High NKLNDLEDALQQAKEDLAR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 485 2.57 0.00 2 37 50 3 728.71460 2184.12925 1.66 59.96 5864 5864 MS2 21/72 Linfeng_20130201_rIgG_2.raw High AQYEDIAQK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 390 2.57 0.00 0 1 50 2 533.26459 1065.52190 0.70 23.77 1241 1241 MS2 13/16 Linfeng_20130204_CTCF_6.raw High mSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 M1(Oxidation); C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 190 2.56 0.00 0 0 50 3 861.05951 2581.16397 0.83 33.51 2511 2511 MS2 24/100 Linfeng_20130204_CTCF_2.raw High TNAENEFVTIK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 465 2.56 0.00 0 39 50 2 633.32269 1265.63811 0.67 38.57 3460 3460 MS2 15/20 Linfeng_20130201_rIgG_3.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 509 2.56 0.00 0 47 50 2 590.30463 1179.60198 1.28 37.12 3358 3358 MS2 17/18 Linfeng_20130201_rIgG_6.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 465 2.56 0.00 0 38 50 2 590.30328 1179.59929 -1.00 37.04 3307 3307 MS2 15/18 Linfeng_20130201_rIgG_10.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.55 0.00 0 3 50 3 1104.77417 3312.30796 -0.08 26.03 1631 1631 MS2 21/152 Linfeng_20130204_CTCF_9.raw High GSGGGSSGGSIGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 266 2.55 0.00 0 0 50 2 546.75610 1092.50493 1.85 16.14 353 353 MS2 16/26 Linfeng_20130204_CTCF_4.raw High SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 440 2.55 0.00 1 49 50 3 447.56100 1340.66846 -0.61 22.64 1775 1775 MS2 16/44 Linfeng_20130201_rIgG_7.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 536 2.55 0.00 2 18 50 3 436.88947 1308.65384 -0.35 20.77 1478 1478 MS2 18/36 Linfeng_20130201_rIgG_1.raw High LRSEIDNVKK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 414 2.55 0.00 2 20 50 3 401.23456 1201.68912 -0.71 18.16 1136 1136 MS2 20/36 Linfeng_20130201_rIgG_9.raw High LRSEIDNVKK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 414 2.55 0.00 2 0 50 3 401.23450 1201.68894 -0.86 18.08 1105 1105 MS2 16/36 Linfeng_20130201_rIgG_4.raw High IEISELNR Unambiguous 2 2 P35908;P04264 CID 1.0000 0.0000 1 1 529 2.55 0.00 0 17 50 2 487.26862 973.52995 -1.41 35.40 3157 3157 MS2 13/14 Linfeng_20130201_rIgG_1.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 22 2.55 0.00 0 0 50 3 795.32568 2383.96250 4.42 25.64 2088 2088 MS2 23/120 Linfeng_20130201_rIgG_4.raw High LRSEIDNVKK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 414 2.54 0.00 2 8 50 3 401.23456 1201.68912 -0.71 18.30 1164 1164 MS2 17/36 Linfeng_20130201_rIgG_6.raw High DYQELMNTK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 209 2.54 0.00 0 48 50 2 571.26141 1141.51555 -3.41 34.79 2339 2339 MS2 11/16 Linfeng_20130204_CTCF_4.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 534 2.54 0.00 2 2 50 3 436.88959 1308.65421 -0.07 21.58 1010 1010 MS2 19/36 Linfeng_20130204_CTCF_6.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 17 2.54 0.00 0 0 50 3 795.32251 2383.95298 0.42 24.84 2018 2018 MS2 22/120 Linfeng_20130201_rIgG_10.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 509 2.53 0.00 0 38 50 2 590.30457 1179.60185 1.17 37.43 3329 3329 MS2 17/18 Linfeng_20130201_rIgG_4.raw High NMQDMVEDYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 57 2.53 0.00 0 30 50 2 650.76843 1300.52959 -0.09 39.24 2778 2778 MS2 15/18 Linfeng_20130204_CTCF_6.raw High AQYEDIAQKSKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 532 2.53 0.00 2 15 44 3 796.39697 2387.17636 1.58 42.46 3124 3124 MS2 23/80 Linfeng_20130204_CTCF_6.raw High GSGGGSSGGSIGGRGSSSGGVK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 391 2.53 0.00 1 1 33 3 584.61365 1751.82639 -0.24 16.25 883 883 MS2 33/84 Linfeng_20130201_rIgG_6.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 527 2.52 0.00 2 41 50 3 436.88953 1308.65403 -0.21 19.76 1340 1340 MS2 15/36 Linfeng_20130201_rIgG_2.raw High LALDLEIATYR Unambiguous 3 1 P04264 CID 1.0000 0.0000 1 1 317 2.52 0.00 0 0 50 2 639.35742 1277.70757 -1.93 52.94 4225 4225 MS2 15/20 Linfeng_20130204_CTCF_6.raw High WELLQQVDTSTR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 503 2.52 0.00 0 25 50 2 738.37836 1475.74944 0.34 53.96 4327 4327 MS2 17/22 Linfeng_20130204_CTCF_6.raw High AQYEDIAQK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 372 2.52 0.00 0 0 50 2 533.26385 1065.52043 -0.67 24.53 1847 1847 MS2 13/16 Linfeng_20130201_rIgG_5.raw High SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 403 2.52 0.00 1 27 50 3 447.56165 1340.67038 0.82 21.64 1601 1601 MS2 18/44 Linfeng_20130201_rIgG_8.raw High TNAENEFVTIK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 469 2.52 0.00 0 22 50 2 633.32220 1265.63713 -0.10 38.29 2687 2687 MS2 13/20 Linfeng_20130204_CTCF_4.raw High LDSELKNmQDMVEDYR Unambiguous 1 1 P04264 M8(Oxidation) CID 1.0000 0.0000 1 1 159 2.52 0.00 1 12 50 3 667.96722 2001.88712 -1.10 36.14 3209 3209 MS2 25/60 Linfeng_20130201_rIgG_2.raw High SLVNLGGSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 507 2.51 0.00 0 0 50 2 437.75275 874.49822 -1.24 31.92 2795 2795 MS2 12/16 Linfeng_20130201_rIgG_3.raw High MSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 217 2.51 0.00 0 10 50 3 855.72687 2565.16605 -0.33 34.44 3092 3092 MS2 24/100 Linfeng_20130201_rIgG_6.raw High GGSGGGGGGSSGGRGSGGGSSGGSIGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 152 2.51 0.00 1 19 50 3 693.97632 2079.91440 -0.20 16.34 892 892 MS2 24/108 Linfeng_20130201_rIgG_3.raw High LLRDYQELMNTK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 469 2.51 0.00 1 4 24 3 508.60031 1523.78638 -1.52 41.42 3187 3187 MS2 18/44 Linfeng_20130204_CTCF_10.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.51 0.00 0 0 50 3 1104.77637 3312.31455 1.91 29.52 2552 2552 MS2 31/152 Linfeng_20130201_rIgG_2.raw High IEISELNR Unambiguous 2 2 P35908;P04264 CID 1.0000 0.0000 1 1 538 2.51 0.00 0 26 50 2 487.26865 973.53002 -1.35 34.22 3019 3019 MS2 13/14 Linfeng_20130201_rIgG_2.raw High GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 10 2.50 0.00 0 0 50 3 1104.77161 3312.30027 -2.40 26.78 2222 2222 MS2 28/152 Linfeng_20130201_rIgG_8.raw Medium LDSELKNmQDMVEDYR Unambiguous 1 1 P04264 M8(Oxidation) CID 1.0000 0.0000 1 1 154 2.50 0.00 1 0 50 3 667.96710 2001.88675 -1.28 36.46 3248 3248 MS2 21/60 Linfeng_20130201_rIgG_3.raw Medium GSGGGSSGGSIGGRGSSSGGVK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 390 2.50 0.00 1 3 50 3 584.61432 1751.82840 0.91 16.22 876 876 MS2 31/84 Linfeng_20130201_rIgG_7.raw High AEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 309 2.50 0.00 0 11 50 2 563.27545 1125.54363 1.20 24.23 1938 1938 MS2 15/18 Linfeng_20130201_rIgG_10.raw High TNAENEFVTIK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 479 2.50 0.00 0 27 50 2 633.32190 1265.63652 -0.58 37.56 3358 3358 MS2 15/20 Linfeng_20130201_rIgG_3.raw High AEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 304 2.50 0.00 0 28 50 2 563.27582 1125.54436 1.85 25.21 2044 2044 MS2 12/18 Linfeng_20130201_rIgG_2.raw Medium GGSGGGGGGSSGGRGSGGGSSGGSIGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 183 2.50 0.00 1 21 50 3 693.97876 2079.92173 3.32 15.80 331 331 MS2 24/108 Linfeng_20130204_CTCF_3.raw Medium GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.50 0.00 0 0 50 3 1104.77222 3312.30210 -1.85 51.18 4290 4290 MS2 27/152 Linfeng_20130204_CTCF_7.raw Medium GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 20 2.50 0.00 0 66 50 3 795.32465 2383.95938 3.11 23.24 1852 1852 MS2 21/120 Linfeng_20130201_rIgG_7.raw Medium GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.49 0.00 0 0 50 3 1104.77319 3312.30503 -0.97 27.28 2329 2329 MS2 30/152 Linfeng_20130201_rIgG_6.raw High IEISELNR Unambiguous 2 2 P35908;P04264 CID 1.0000 0.0000 1 1 521 2.49 0.00 0 21 50 2 487.26877 973.53026 -1.10 35.83 3184 3184 MS2 13/14 Linfeng_20130201_rIgG_3.raw Medium GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 10 2.49 0.00 0 4 50 3 1104.76965 3312.29441 -4.17 28.62 2455 2455 MS2 28/152 Linfeng_20130201_rIgG_3.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 13 2.49 0.00 0 0 50 2 1192.47754 2383.94780 -1.75 27.94 2379 2379 MS2 17/60 Linfeng_20130201_rIgG_3.raw Medium TNAENEFVTIKK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 481 2.49 0.00 1 18 50 3 465.24792 1393.72922 -2.16 30.25 2628 2628 MS2 17/44 Linfeng_20130201_rIgG_2.raw High AQYEDIAQK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 411 2.49 0.00 0 4 50 2 533.26453 1065.52178 0.59 24.43 1967 1967 MS2 12/16 Linfeng_20130201_rIgG_3.raw Medium GSGGGSSGGSIGGRGSSSGGVK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 391 2.48 0.00 1 4 50 3 584.61371 1751.82657 -0.13 16.17 863 863 MS2 31/84 Linfeng_20130201_rIgG_8.raw Medium SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 414 2.48 0.00 1 30 50 3 447.56061 1340.66727 -1.50 22.55 1285 1285 MS2 18/44 Linfeng_20130204_CTCF_1.raw High mSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 M1(Oxidation); C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 201 2.48 0.00 0 0 50 2 1291.09070 2581.17412 4.77 32.53 2455 2455 MS2 13/50 Linfeng_20130204_CTCF_1.raw Medium FSScGGGGGSFGAGGGFGSR Unambiguous 1 1 P04264 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 60 2.48 0.00 0 28 50 3 589.25031 1765.73636 0.88 35.36 3153 3153 MS2 26/76 Linfeng_20130201_rIgG_1.raw High TNAENEFVTIKK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 535 2.48 0.00 1 14 50 2 697.36932 1393.73137 -0.62 31.98 2588 2588 MS2 15/22 Linfeng_20130201_rIgG_5.raw High AEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 312 2.47 0.00 0 11 50 2 563.27509 1125.54289 0.54 25.35 2092 2092 MS2 14/18 Linfeng_20130201_rIgG_9.raw Medium GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.47 0.00 0 4 50 3 1104.77747 3312.31784 2.90 26.99 1812 1812 MS2 28/152 Linfeng_20130204_CTCF_2.raw Medium NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 528 2.47 0.00 2 54 50 3 436.88983 1308.65494 0.49 20.07 1370 1370 MS2 19/36 Linfeng_20130201_rIgG_4.raw Medium TNAENEFVTIKK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 548 2.47 0.00 1 18 50 3 465.24854 1393.73105 -0.85 31.79 2787 2787 MS2 16/44 Linfeng_20130201_rIgG_10.raw Medium QISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 424 2.46 0.00 0 35 27 3 572.95435 1716.84848 -1.57 39.82 3145 3145 MS2 19/56 Linfeng_20130204_CTCF_2.raw High LALDLEIATYR Unambiguous 3 1 P04264 CID 1.0000 0.0000 1 1 328 2.46 0.00 0 9 50 2 639.35730 1277.70732 -2.12 52.61 4503 4503 MS2 15/20 Linfeng_20130204_CTCF_2.raw Medium GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.46 0.00 0 0 50 3 1104.77551 3312.31198 1.13 28.81 2461 2461 MS2 27/152 Linfeng_20130201_rIgG_4.raw High TLLEGEESR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 580 2.46 0.00 0 18 50 2 517.26215 1033.51702 0.90 28.40 2470 2470 MS2 12/16 Linfeng_20130201_rIgG_6.raw Medium GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.46 0.00 0 1 50 3 1104.77747 3312.31784 2.90 26.17 1445 1445 MS2 23/152 Linfeng_20130204_CTCF_4.raw High GSGGGSSGGSIGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 263 2.46 0.00 0 12 50 2 546.75647 1092.50566 2.52 16.17 370 370 MS2 18/26 Linfeng_20130204_CTCF_3.raw High NMQDMVEDYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 56 2.46 0.00 0 51 50 2 650.76794 1300.52861 -0.85 39.39 3100 3100 MS2 15/18 Linfeng_20130204_CTCF_2.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 10 2.46 0.00 0 0 50 2 1192.47607 2383.94487 -2.98 23.14 1349 1349 MS2 20/60 Linfeng_20130204_CTCF_2.raw Medium TNAENEFVTIKK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 549 2.46 0.00 1 2 50 3 465.24832 1393.73041 -1.31 30.78 2245 2245 MS2 16/44 Linfeng_20130204_CTCF_2.raw High AQYEDIAQK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 418 2.45 0.00 0 10 50 2 533.26514 1065.52300 1.73 23.26 1818 1818 MS2 13/16 Linfeng_20130201_rIgG_1.raw High TLLEGEESR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 517 2.45 0.00 0 11 50 2 517.26154 1033.51579 -0.28 26.34 2170 2170 MS2 13/16 Linfeng_20130201_rIgG_4.raw Medium GGSGGGGGGSSGGRGSGGGSSGGSIGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 163 2.45 0.00 1 22 50 3 693.97766 2079.91843 1.74 16.40 900 900 MS2 27/108 Linfeng_20130201_rIgG_2.raw High TLLEGEESR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 510 2.45 0.00 0 7 50 2 517.26160 1033.51592 -0.16 26.81 1535 1535 MS2 12/16 Linfeng_20130204_CTCF_6.raw Medium TNAENEFVTIKK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 476 2.44 0.00 1 44 50 3 465.24765 1393.72840 -2.75 31.48 2766 2766 MS2 18/44 Linfeng_20130201_rIgG_1.raw Medium LLRDYQELmNTK Unambiguous 1 1 P04264 M9(Oxidation) CID 1.0000 0.0000 1 1 470 2.44 0.00 1 56 50 3 513.93195 1539.78128 -1.51 32.80 2887 2887 MS2 17/44 Linfeng_20130201_rIgG_10.raw Medium SGGGFSSGSAGIINYQRR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 461 2.44 0.00 1 27 47 3 605.30212 1813.89182 -1.24 35.06 3091 3091 MS2 19/68 Linfeng_20130201_rIgG_4.raw Medium LRSEIDNVKK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 418 2.44 0.00 2 0 50 3 401.23444 1201.68875 -1.01 18.92 723 723 MS2 16/36 Linfeng_20130204_CTCF_6.raw High SLVNLGGSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 450 2.44 0.00 0 0 50 2 437.75272 874.49816 -1.31 32.30 2068 2068 MS2 14/16 Linfeng_20130204_CTCF_6.raw Medium SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 414 2.44 0.00 1 41 50 3 447.56073 1340.66764 -1.23 21.63 1611 1611 MS2 19/44 Linfeng_20130201_rIgG_9.raw Medium GSGGGSSGGSIGGRGSSSGGVK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 371 2.44 0.00 1 5 50 3 584.61383 1751.82694 0.08 16.17 874 874 MS2 29/84 Linfeng_20130201_rIgG_3.raw High SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 309 2.44 0.00 1 0 50 2 670.83691 1340.66655 -2.04 22.47 1624 1624 MS2 16/22 Linfeng_20130201_rIgG_5.raw Medium SGGGFSSGSAGIINYQRR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 461 2.43 0.00 1 9 43 3 605.30237 1813.89255 -0.83 35.46 3147 3147 MS2 21/68 Linfeng_20130201_rIgG_3.raw High SGGGFSSGSAGIINYQRR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 466 2.43 0.00 1 9 50 2 907.45081 1813.89433 0.15 34.80 3076 3076 MS2 11/34 Linfeng_20130201_rIgG_2.raw High AEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 310 2.43 0.00 0 0 50 2 563.27496 1125.54265 0.33 25.46 2120 2120 MS2 14/18 Linfeng_20130201_rIgG_6.raw High SLVNLGGSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 527 2.43 0.00 0 1 50 2 437.75418 874.50109 2.04 33.91 2231 2231 MS2 13/16 Linfeng_20130204_CTCF_6.raw High LALDLEIATYR Unambiguous 3 1 P04264 CID 1.0000 0.0000 1 1 318 2.43 0.00 0 32 50 2 639.36169 1277.71611 4.76 52.62 5094 5094 MS2 16/20 Linfeng_20130201_rIgG_1.raw High SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 415 2.43 0.00 1 18 50 2 670.83972 1340.67217 2.15 21.56 1597 1597 MS2 15/22 Linfeng_20130201_rIgG_10.raw Medium GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.42 0.00 0 0 50 3 1104.77576 3312.31272 1.35 30.58 2661 2661 MS2 30/152 Linfeng_20130201_rIgG_2.raw Medium TNAENEFVTIKK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 542 2.42 0.00 1 39 50 3 465.24829 1393.73032 -1.37 31.83 2574 2574 MS2 20/44 Linfeng_20130201_rIgG_5.raw Medium GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.42 0.00 0 0 50 3 1104.77710 3312.31675 2.57 26.13 1441 1441 MS2 26/152 Linfeng_20130204_CTCF_4.raw High GSGGGSSGGSIGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 251 2.42 0.00 0 6 50 2 546.75562 1092.50395 0.95 16.13 415 415 MS2 18/26 Linfeng_20130204_CTCF_2.raw High NmQDmVEDYR Unambiguous 1 1 P04264 M2(Oxidation); M5(Oxidation) CID 1.0000 0.0000 1 1 24 2.41 0.00 0 0 50 2 666.76501 1332.52275 2.41 23.97 1908 1908 MS2 13/18 Linfeng_20130201_rIgG_3.raw High NmQDmVEDYR Unambiguous 1 1 P04264 M2(Oxidation); M5(Oxidation) CID 1.0000 0.0000 1 1 20 2.41 0.00 0 0 50 2 666.76324 1332.51921 -0.25 24.07 1484 1484 MS2 12/18 Linfeng_20130204_CTCF_1.raw Medium GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.41 0.00 0 75 50 3 1104.77478 3312.30979 0.47 25.53 2097 2097 MS2 29/152 Linfeng_20130201_rIgG_1.raw Medium SGGGFSSGSAGIINYQRR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 461 2.41 0.00 1 19 34 3 605.30212 1813.89182 -1.24 35.01 3102 3102 MS2 18/68 Linfeng_20130201_rIgG_3.raw High AQYEDIAQK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 413 2.41 0.00 0 0 50 2 533.26538 1065.52349 2.19 24.71 1491 1491 MS2 12/16 Linfeng_20130204_CTCF_7.raw High TNAENEFVTIK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 469 2.41 0.00 0 14 50 2 633.32062 1265.63396 -2.61 37.93 2995 2995 MS2 13/20 Linfeng_20130204_CTCF_1.raw High SISISVAR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 464 2.41 0.00 0 19 50 2 416.74762 832.48796 -0.92 33.02 2920 2920 MS2 13/14 Linfeng_20130201_rIgG_1.raw Medium GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 20 2.41 0.00 0 0 50 3 795.32391 2383.95719 2.19 25.61 2088 2088 MS2 22/120 Linfeng_20130201_rIgG_2.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 524 2.41 0.00 2 4 50 2 654.82965 1308.65203 -1.74 20.78 1491 1491 MS2 14/18 Linfeng_20130201_rIgG_10.raw Medium GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.40 0.00 0 0 50 3 1104.77417 3312.30796 -0.08 29.57 2570 2570 MS2 27/152 Linfeng_20130201_rIgG_10.raw High AQYEDIAQK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 355 2.40 0.00 0 6 50 2 533.26440 1065.52153 0.36 24.44 1965 1965 MS2 12/16 Linfeng_20130201_rIgG_10.raw Medium TNAENEFVTIKK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 476 2.40 0.00 1 21 50 3 465.24777 1393.72876 -2.49 30.71 2692 2692 MS2 17/44 Linfeng_20130201_rIgG_9.raw High NMQDMVEDYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 57 2.40 0.00 0 35 50 2 650.76849 1300.52971 0.00 39.04 3520 3520 MS2 15/18 Linfeng_20130201_rIgG_9.raw Medium SGGGFSSGSAGIINYQRR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 464 2.40 0.00 1 36 50 3 605.30249 1813.89292 -0.63 35.18 3132 3132 MS2 21/68 Linfeng_20130201_rIgG_9.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 451 2.40 0.00 0 48 50 2 590.30316 1179.59905 -1.21 37.23 2585 2585 MS2 13/18 Linfeng_20130204_CTCF_3.raw High AEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 329 2.39 0.00 0 30 50 2 563.27509 1125.54289 0.54 24.32 1823 1823 MS2 14/18 Linfeng_20130201_rIgG_5.raw High SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 413 2.39 0.00 1 25 50 2 670.83777 1340.66826 -0.76 23.06 1804 1804 MS2 14/22 Linfeng_20130201_rIgG_3.raw High TLLEGEESR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 526 2.39 0.00 0 30 50 2 517.26135 1033.51543 -0.63 28.30 1895 1895 MS2 13/16 Linfeng_20130204_CTCF_9.raw Medium GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.39 0.00 0 0 50 3 1104.77612 3312.31382 1.69 29.69 2583 2583 MS2 29/152 Linfeng_20130201_rIgG_1.raw High SLDLDSIIAEVK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 457 2.39 0.00 0 51 50 2 651.86102 1302.71477 -0.32 52.97 5114 5114 MS2 14/22 Linfeng_20130201_rIgG_5.raw Medium TNAENEFVTIKKDVDGAYmTK Unambiguous 1 1 P04264 M19(Oxidation) CID 1.0000 0.0000 1 1 461 2.39 0.00 2 45 39 3 797.39020 2390.15604 0.63 45.30 4160 4160 MS2 26/80 Linfeng_20130201_rIgG_4.raw High SGGGFSSGSAGIINYQRR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 449 2.39 0.00 1 0 50 2 907.44958 1813.89189 -1.20 35.17 3118 3118 MS2 9/34 Linfeng_20130201_rIgG_3.raw Medium KQISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 608 2.39 0.00 1 14 50 3 615.65369 1844.94651 0.19 35.36 2594 2594 MS2 17/60 Linfeng_20130204_CTCF_7.raw Medium SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 412 2.38 0.00 1 17 50 3 447.56146 1340.66983 0.41 21.92 1046 1046 MS2 14/44 Linfeng_20130204_CTCF_6.raw High TLLEGEESR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 487 2.38 0.00 0 2 50 2 517.26202 1033.51677 0.67 28.49 1918 1918 MS2 11/16 Linfeng_20130204_CTCF_7.raw Medium mSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 M1(Oxidation); C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 179 2.38 0.00 0 0 50 3 861.05750 2581.15793 -1.51 31.93 2811 2811 MS2 25/100 Linfeng_20130201_rIgG_1.raw Medium LLRDYQELMNTK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 452 2.38 0.00 1 29 50 3 508.60144 1523.78977 0.70 41.15 3180 3180 MS2 18/44 Linfeng_20130204_CTCF_7.raw Medium GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 18 2.38 0.00 0 59 50 3 795.32172 2383.95060 -0.58 25.87 2134 2134 MS2 25/120 Linfeng_20130201_rIgG_1.raw Medium LDSELKNmQDMVEDYR Unambiguous 1 1 P04264 M8(Oxidation) CID 1.0000 0.0000 1 1 168 2.38 0.00 1 21 50 3 667.96790 2001.88913 -0.09 36.69 2825 2825 MS2 23/60 Linfeng_20130204_CTCF_2.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 454 2.37 0.00 0 39 50 2 590.30286 1179.59844 -1.73 35.78 3173 3173 MS2 16/18 Linfeng_20130201_rIgG_2.raw High DYQELMNTK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 204 2.37 0.00 0 28 50 2 571.26312 1141.51897 -0.41 34.56 3058 3058 MS2 13/16 Linfeng_20130201_rIgG_3.raw High GGSGGGGGGSSGGRGSGGGSSGGSIGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 189 2.37 0.00 1 0 50 2 1040.46655 2079.92583 5.29 15.84 829 829 MS2 18/54 Linfeng_20130201_rIgG_7.raw Medium GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 21 2.37 0.00 0 5 50 3 795.32367 2383.95646 1.88 23.38 1241 1241 MS2 25/120 Linfeng_20130204_CTCF_10.raw High AEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 270 2.36 0.00 0 8 50 2 563.27460 1125.54192 -0.32 23.97 1905 1905 MS2 15/18 Linfeng_20130201_rIgG_1.raw Medium LDSELKNmQDmVEDYR Unambiguous 1 1 P04264 M8(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 132 2.36 0.00 1 0 50 3 673.29901 2017.88248 -0.87 31.34 2217 2217 MS2 19/60 Linfeng_20130204_CTCF_9.raw Medium NKLNDLEDALQQAK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 543 2.36 0.00 1 42 18 3 533.94934 1599.83347 -0.18 46.38 3730 3730 MS2 22/52 Linfeng_20130204_CTCF_10.raw High TLLEGEESR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 511 2.36 0.00 0 0 50 2 517.26129 1033.51531 -0.75 26.51 2049 2049 MS2 13/16 Linfeng_20130201_rIgG_5.raw High SISISVAR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 310 2.35 0.00 0 14 50 2 416.74924 832.49120 2.96 33.51 2191 2191 MS2 12/14 Linfeng_20130204_CTCF_6.raw Medium mSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 M1(Oxidation); C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 155 2.35 0.00 0 0 50 3 861.05603 2581.15354 -3.21 33.17 3017 3017 MS2 19/100 Linfeng_20130201_rIgG_7.raw High DYQELmNTK Unambiguous 1 1 P04264 M6(Oxidation) CID 1.0000 0.0000 1 1 127 2.35 0.00 0 0 50 2 579.26056 1157.51384 -0.44 24.31 1947 1947 MS2 13/16 Linfeng_20130201_rIgG_1.raw Medium GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.35 0.00 0 0 50 3 1104.77722 3312.31711 2.68 31.50 2769 2769 MS2 29/152 Linfeng_20130201_rIgG_9.raw Medium NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 528 2.34 0.00 2 6 50 3 436.88968 1308.65448 0.14 21.24 1550 1550 MS2 17/36 Linfeng_20130201_rIgG_8.raw Medium SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 375 2.34 0.00 1 43 50 3 447.56039 1340.66663 -1.98 21.24 1537 1537 MS2 19/44 Linfeng_20130201_rIgG_2.raw High IEISELNR Unambiguous 2 2 P35908;P04264 CID 1.0000 0.0000 1 1 507 2.34 0.00 0 28 50 2 487.26855 973.52983 -1.54 35.60 3154 3154 MS2 13/14 Linfeng_20130201_rIgG_2.raw High AEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 288 2.34 0.00 0 0 50 2 563.27429 1125.54131 -0.87 25.45 1943 1943 MS2 15/18 Linfeng_20130201_rIgG_5.raw Medium GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 10 2.34 0.00 0 0 50 3 1104.77100 3312.29844 -2.96 30.06 2619 2619 MS2 27/152 Linfeng_20130201_rIgG_10.raw Medium MSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 P04264 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 215 2.34 0.00 0 11 50 3 855.72656 2565.16513 -0.69 35.06 3107 3107 MS2 19/100 Linfeng_20130201_rIgG_3.raw High TNAENEFVTIK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 474 2.33 0.00 0 42 50 2 633.32245 1265.63762 0.28 38.48 3436 3436 MS2 14/20 Linfeng_20130201_rIgG_4.raw High LRSEIDNVKK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 455 2.33 0.00 2 21 50 2 601.34851 1201.68974 -0.19 18.22 1123 1123 MS2 12/18 Linfeng_20130201_rIgG_4.raw Medium NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 528 2.32 0.00 2 58 50 3 436.88989 1308.65512 0.63 20.24 1360 1360 MS2 16/36 Linfeng_20130201_rIgG_5.raw Medium LLRDYQELmNTK Unambiguous 1 1 P04264 M9(Oxidation) CID 1.0000 0.0000 1 1 459 2.32 0.00 1 9 50 3 513.93231 1539.78238 -0.80 32.71 2874 2874 MS2 16/44 Linfeng_20130201_rIgG_3.raw High LDSELKNmQDmVEDYR Unambiguous 1 1 P04264 M8(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 101 2.32 0.00 1 0 50 2 1009.44312 2017.87895 -2.62 31.47 2313 2313 MS2 15/30 Linfeng_20130204_CTCF_2.raw Medium GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 14 2.31 0.00 0 51 50 3 795.31982 2383.94492 -2.96 27.20 2283 2283 MS2 23/120 Linfeng_20130201_rIgG_3.raw Medium NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 560 2.31 0.00 2 40 50 3 436.89014 1308.65586 1.19 20.76 1421 1421 MS2 18/36 Linfeng_20130201_rIgG_5.raw High DYQELMNTK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 211 2.31 0.00 0 42 50 2 571.26245 1141.51763 -1.59 34.82 2560 2560 MS2 13/16 Linfeng_20130204_CTCF_9.raw High GGSGGGGGGSSGGRGSGGGSSGGSIGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 144 2.30 0.00 1 6 50 2 1040.46106 2079.91484 0.01 15.84 812 812 MS2 12/54 Linfeng_20130201_rIgG_4.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 18 2.30 0.00 0 0 50 2 1192.48291 2383.95854 2.76 24.16 1902 1902 MS2 18/60 Linfeng_20130201_rIgG_4.raw Medium QISNLQQSISDAEQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 456 2.30 0.00 0 7 29 3 572.95538 1716.85160 0.24 39.81 3600 3600 MS2 26/56 Linfeng_20130201_rIgG_9.raw Medium GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.30 0.00 0 0 50 3 1104.77258 3312.30320 -1.52 29.16 2512 2512 MS2 29/152 Linfeng_20130201_rIgG_3.raw High AEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 310 2.30 0.00 0 18 50 2 563.27515 1125.54302 0.65 25.58 2135 2135 MS2 13/18 Linfeng_20130201_rIgG_6.raw Medium LLRDYQELmNTK Unambiguous 1 1 P04264 M9(Oxidation) CID 1.0000 0.0000 1 1 502 2.29 0.00 1 24 50 3 513.93268 1539.78348 -0.09 32.35 2836 2836 MS2 17/44 Linfeng_20130201_rIgG_2.raw High TNAENEFVTIKK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 535 2.29 0.00 1 0 50 2 697.36871 1393.73015 -1.49 30.74 2695 2695 MS2 11/22 Linfeng_20130201_rIgG_9.raw High TNAENEFVTIK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 466 2.29 0.00 0 47 50 2 633.32275 1265.63823 0.77 38.33 2695 2695 MS2 10/20 Linfeng_20130204_CTCF_3.raw High AQYEDIAQK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 361 2.29 0.00 0 11 50 2 533.26392 1065.52056 -0.56 23.45 1847 1847 MS2 13/16 Linfeng_20130201_rIgG_3.raw High NmQDmVEDYR Unambiguous 1 1 P04264 M2(Oxidation); M5(Oxidation) CID 1.0000 0.0000 1 1 19 2.29 0.00 0 37 50 2 666.76349 1332.51970 0.12 23.92 1880 1880 MS2 12/18 Linfeng_20130201_rIgG_2.raw Medium SGGGFSSGSAGIINYQR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 391 2.29 0.00 0 31 50 3 553.26953 1657.79404 0.66 39.06 3514 3514 MS2 29/64 Linfeng_20130201_rIgG_10.raw Medium GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 9 2.29 0.00 0 0 50 3 1104.77588 3312.31308 1.46 26.79 1722 1722 MS2 26/152 Linfeng_20130204_CTCF_7.raw High TLLEGEESR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 491 2.29 0.00 0 0 50 2 517.26074 1033.51421 -1.81 27.92 1642 1642 MS2 13/16 Linfeng_20130204_CTCF_6.raw High AEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 296 2.28 0.00 0 15 50 2 563.27600 1125.54473 2.17 25.23 2067 2067 MS2 13/18 Linfeng_20130201_rIgG_3.raw High DYQELmNTK Unambiguous 1 1 P04264 M6(Oxidation) CID 1.0000 0.0000 1 1 133 2.28 0.00 0 0 50 2 579.26007 1157.51286 -1.29 24.06 1915 1915 MS2 13/16 Linfeng_20130201_rIgG_1.raw Medium SGGGFSSGSAGIINYQRR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 463 2.28 0.00 1 19 40 3 605.30243 1813.89273 -0.73 34.65 3061 3061 MS2 21/68 Linfeng_20130201_rIgG_2.raw High SLVNLGGSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 545 2.28 0.00 0 3 50 2 437.75287 874.49846 -0.96 31.65 2766 2766 MS2 11/16 Linfeng_20130201_rIgG_2.raw High AQYEDIAQK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 358 2.28 0.00 0 7 50 2 533.26440 1065.52153 0.36 24.63 2011 2011 MS2 12/16 Linfeng_20130201_rIgG_6.raw Medium GSGGGSSGGSIGGRGSSSGGVK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 372 2.27 0.00 1 0 12 3 584.61377 1751.82676 -0.03 16.15 871 871 MS2 29/84 Linfeng_20130201_rIgG_2.raw Medium SGGGFSSGSAGIINYQRR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 461 2.27 0.00 1 17 50 3 605.30212 1813.89182 -1.24 35.23 3221 3221 MS2 21/68 Linfeng_20130201_rIgG_7.raw Medium SLVNLGGSKSISISVAR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 173 2.27 0.00 1 8 11 3 563.32959 1687.97422 2.38 44.98 4117 4117 MS2 21/64 Linfeng_20130201_rIgG_2.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 513 2.27 0.00 2 11 50 2 654.83185 1308.65642 1.62 21.17 967 967 MS2 14/18 Linfeng_20130204_CTCF_6.raw High SISISVAR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 441 2.27 0.00 0 4 50 2 416.74792 832.48857 -0.19 33.83 2443 2443 MS2 11/14 Linfeng_20130204_CTCF_7.raw High AQYEDIAQK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 376 2.27 0.00 0 37 50 2 533.26404 1065.52080 -0.33 23.97 1308 1308 MS2 12/16 Linfeng_20130204_CTCF_10.raw High AEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 274 2.27 0.00 0 14 50 2 563.27454 1125.54180 -0.43 25.28 2074 2074 MS2 12/18 Linfeng_20130201_rIgG_10.raw Medium QISNLQQSISDAEQRGENALK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 549 2.26 0.00 1 16 15 3 777.06226 2329.17221 -0.91 49.75 4660 4660 MS2 21/80 Linfeng_20130201_rIgG_2.raw Medium LDSELKNmQDMVEDYR Unambiguous 1 1 P04264 M8(Oxidation) CID 1.0000 0.0000 1 1 179 2.26 0.00 1 12 50 3 667.96863 2001.89133 1.01 36.93 2550 2550 MS2 19/60 Linfeng_20130204_CTCF_4.raw Medium LLRDYQELMNTK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 465 2.26 0.00 1 7 50 3 508.60257 1523.79316 2.92 40.44 3254 3254 MS2 16/44 Linfeng_20130204_CTCF_1.raw Medium SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 424 2.26 0.00 1 49 50 3 447.56113 1340.66883 -0.34 21.73 1165 1165 MS2 17/44 Linfeng_20130204_CTCF_2.raw Medium SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 419 2.25 0.00 1 51 50 3 447.56131 1340.66938 0.07 21.69 1534 1534 MS2 19/44 Linfeng_20130201_rIgG_5.raw High NMQDMVEDYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 56 2.25 0.00 0 48 50 2 650.76831 1300.52934 -0.28 39.76 3629 3629 MS2 15/18 Linfeng_20130201_rIgG_6.raw Medium SGGGFSSGSAGIINYQRR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 475 2.25 0.00 1 39 50 3 605.30298 1813.89438 0.18 35.63 2641 2641 MS2 18/68 Linfeng_20130204_CTCF_9.raw High NmQDmVEDYR Unambiguous 1 1 P04264 M2(Oxidation); M5(Oxidation) CID 1.0000 0.0000 1 1 19 2.24 0.00 0 19 50 2 666.76392 1332.52056 0.76 23.95 1874 1874 MS2 14/18 Linfeng_20130201_rIgG_4.raw High AQYEDIAQK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 398 2.24 0.00 0 20 50 2 533.26563 1065.52397 2.65 23.42 1399 1399 MS2 11/16 Linfeng_20130204_CTCF_1.raw High AEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 295 2.24 0.00 0 14 50 2 563.27588 1125.54448 1.95 25.24 2042 2042 MS2 13/18 Linfeng_20130201_rIgG_4.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 506 2.24 0.00 2 0 50 2 654.83093 1308.65459 0.22 21.04 1536 1536 MS2 14/18 Linfeng_20130201_rIgG_6.raw High AEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 291 2.21 0.00 0 27 50 2 563.27380 1125.54033 -1.73 25.15 2038 2038 MS2 14/18 Linfeng_20130201_rIgG_2.raw High NmQDmVEDYR Unambiguous 1 1 P04264 M2(Oxidation); M5(Oxidation) CID 1.0000 0.0000 1 1 19 2.20 0.00 0 33 50 2 666.76343 1332.51958 0.03 25.20 2061 2061 MS2 13/18 Linfeng_20130201_rIgG_1.raw High LLRDYQELMNTK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 430 2.20 0.00 1 40 50 2 762.39423 1523.78118 -4.94 41.36 3180 3180 MS2 11/22 Linfeng_20130204_CTCF_10.raw High SISISVAR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 450 2.20 0.00 0 0 50 2 416.74765 832.48802 -0.85 33.47 2953 2953 MS2 13/14 Linfeng_20130201_rIgG_10.raw High TLLEGEESR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 527 2.20 0.00 0 57 50 2 517.26129 1033.51531 -0.75 28.11 1874 1874 MS2 12/16 Linfeng_20130204_CTCF_9.raw High GSGGGSSGGSIGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 256 2.20 0.00 0 0 50 2 546.75562 1092.50395 0.95 16.23 398 398 MS2 15/26 Linfeng_20130204_CTCF_10.raw High NmQDmVEDYR Unambiguous 1 1 P04264 M2(Oxidation); M5(Oxidation) CID 1.0000 0.0000 1 1 20 2.19 0.00 0 13 50 2 666.76276 1332.51824 -0.98 23.71 1874 1874 MS2 11/18 Linfeng_20130201_rIgG_1.raw High SKAEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 439 2.19 0.00 1 9 50 2 670.83923 1340.67119 1.42 22.73 1299 1299 MS2 15/22 Linfeng_20130204_CTCF_2.raw High TLLEGEESR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 529 2.18 0.00 0 35 50 2 517.26166 1033.51604 -0.04 28.21 1803 1803 MS2 12/16 Linfeng_20130204_CTCF_10.raw High DYQELMNTK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 218 2.18 0.00 0 56 50 2 571.26208 1141.51689 -2.23 34.69 3084 3084 MS2 13/16 Linfeng_20130201_rIgG_9.raw High LLRDYQELMNTK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 391 2.18 0.00 1 0 50 2 762.39905 1523.79082 1.39 41.29 2995 2995 MS2 11/22 Linfeng_20130204_CTCF_4.raw High SISISVAR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 442 2.17 0.00 0 2 50 2 416.74863 832.48998 1.50 32.41 2079 2079 MS2 13/14 Linfeng_20130204_CTCF_6.raw High IEISELNR Unambiguous 2 2 P35908;P04264 CID 1.0000 0.0000 1 1 451 2.17 0.00 0 28 50 2 487.27002 973.53276 1.47 36.04 3250 3250 MS2 13/14 Linfeng_20130201_rIgG_6.raw High AQYEDIAQK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 359 2.17 0.00 0 6 50 2 533.26410 1065.52092 -0.22 24.45 1980 1980 MS2 13/16 Linfeng_20130201_rIgG_9.raw High AEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 317 2.16 0.00 0 0 50 2 563.27515 1125.54302 0.65 24.21 1947 1947 MS2 14/18 Linfeng_20130201_rIgG_9.raw High RVDQLKSDQSR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 537 2.15 0.00 2 14 50 2 666.35437 1331.70146 -0.90 16.00 855 855 MS2 9/20 Linfeng_20130201_rIgG_2.raw High DYQELmNTK Unambiguous 1 1 P04264 M6(Oxidation) CID 1.0000 0.0000 1 1 137 2.15 0.00 0 14 50 2 579.25958 1157.51189 -2.13 24.94 2027 2027 MS2 12/16 Linfeng_20130201_rIgG_1.raw High SISISVAR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 378 2.15 0.00 0 30 50 2 416.74960 832.49193 3.84 31.97 2399 2399 MS2 12/14 Linfeng_20130204_CTCF_1.raw High AEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 314 2.14 0.00 0 25 50 2 563.27496 1125.54265 0.33 23.95 1884 1884 MS2 14/18 Linfeng_20130201_rIgG_2.raw High RRVDQLK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 287 2.14 0.00 2 20 50 2 457.78073 914.55419 1.22 16.02 837 837 MS2 12/12 Linfeng_20130201_rIgG_5.raw High GSGGGSSGGSIGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 264 2.14 0.00 0 0 50 2 546.75458 1092.50188 -0.95 16.16 404 404 MS2 15/26 Linfeng_20130204_CTCF_8.raw High AEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 303 2.14 0.00 0 11 50 2 563.27277 1125.53826 -3.58 25.45 2066 2066 MS2 13/18 Linfeng_20130201_rIgG_4.raw High AQYEDIAQK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 381 2.13 0.00 0 7 50 2 533.26410 1065.52092 -0.22 24.56 2026 2026 MS2 12/16 Linfeng_20130201_rIgG_7.raw High AEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 313 2.12 0.00 0 19 50 2 563.27502 1125.54277 0.44 24.35 1941 1941 MS2 14/18 Linfeng_20130201_rIgG_8.raw High TNAENEFVTIK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 508 2.12 0.00 0 39 50 2 633.32159 1265.63591 -1.07 38.19 3466 3466 MS2 14/20 Linfeng_20130201_rIgG_6.raw High SLVNLGGSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 468 2.12 0.00 0 5 50 2 437.75229 874.49730 -2.29 32.08 2372 2372 MS2 13/16 Linfeng_20130204_CTCF_2.raw High SISISVAR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 437 2.11 0.00 0 0 50 2 416.74771 832.48815 -0.70 32.07 2815 2815 MS2 12/14 Linfeng_20130201_rIgG_10.raw High TLLEGEESR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 552 2.11 0.00 0 0 50 2 517.26111 1033.51494 -1.10 27.50 1802 1802 MS2 10/16 Linfeng_20130204_CTCF_7.raw High EREQIK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 692 2.10 0.00 1 0 50 2 401.72443 802.44158 -0.26 15.51 774 774 MS2 9/10 Linfeng_20130201_rIgG_4.raw High SLVNLGGSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 575 2.10 0.00 0 9 50 2 437.75250 874.49773 -1.80 31.97 2786 2786 MS2 13/16 Linfeng_20130201_rIgG_4.raw High TLLEGEESR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 527 2.10 0.00 0 0 50 2 517.26160 1033.51592 -0.16 27.30 2299 2299 MS2 13/16 Linfeng_20130201_rIgG_1.raw High SISISVAR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 405 2.10 0.00 0 36 50 2 416.74728 832.48729 -1.73 33.05 2903 2903 MS2 13/14 Linfeng_20130201_rIgG_2.raw High NMQDMVEDYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 55 2.09 0.00 0 51 50 2 650.77002 1300.53276 2.35 39.63 2826 2826 MS2 14/18 Linfeng_20130204_CTCF_4.raw High RRVDQLK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 298 2.09 0.00 2 6 50 2 457.77994 914.55260 -0.52 15.97 851 851 MS2 11/12 Linfeng_20130201_rIgG_3.raw High EREQIK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 639 2.09 0.00 1 9 50 2 401.72400 802.44072 -1.32 15.49 780 780 MS2 10/10 Linfeng_20130201_rIgG_5.raw High RRVDQLK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 295 2.08 0.00 2 2 50 2 457.77942 914.55156 -1.65 15.96 851 851 MS2 12/12 Linfeng_20130201_rIgG_2.raw High AQYEDIAQK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 410 2.08 0.00 0 16 50 2 533.26556 1065.52385 2.53 23.59 1403 1403 MS2 10/16 Linfeng_20130204_CTCF_2.raw High GSGGGSSGGSIGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 236 2.08 0.00 0 0 50 2 546.75519 1092.50310 0.17 16.12 397 397 MS2 15/26 Linfeng_20130204_CTCF_9.raw High AQYEDIAQK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 399 2.08 0.00 0 7 50 2 533.26544 1065.52361 2.30 23.44 1851 1851 MS2 13/16 Linfeng_20130201_rIgG_9.raw High NmQDmVEDYR Unambiguous 1 1 P04264 M2(Oxidation); M5(Oxidation) CID 1.0000 0.0000 1 1 21 2.07 0.00 0 36 50 2 666.76324 1332.51921 -0.25 23.93 1901 1901 MS2 13/18 Linfeng_20130201_rIgG_1.raw High AQYEDIAQK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 437 2.06 0.00 0 31 50 2 533.26733 1065.52739 5.86 23.80 1189 1189 MS2 12/16 Linfeng_20130204_CTCF_4.raw High AEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 322 2.06 0.00 0 11 50 2 563.27496 1125.54265 0.33 24.59 1478 1478 MS2 12/18 Linfeng_20130204_CTCF_7.raw High AEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 309 2.06 0.00 0 14 50 2 563.27588 1125.54448 1.95 24.14 1899 1899 MS2 13/18 Linfeng_20130201_rIgG_4.raw High NMQDMVEDYR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 56 2.05 0.00 0 38 50 2 650.76941 1300.53154 1.41 38.47 3444 3444 MS2 14/18 Linfeng_20130201_rIgG_2.raw High TNAENEFVTIKK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 526 2.05 0.00 1 25 50 2 697.36926 1393.73125 -0.70 32.29 2309 2309 MS2 13/22 Linfeng_20130204_CTCF_9.raw High RVDQLKSDQSR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 490 2.04 0.00 2 32 50 2 666.35516 1331.70305 0.29 15.99 828 828 MS2 11/20 Linfeng_20130201_rIgG_4.raw High SISISVARGGGR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 554 2.04 0.00 1 0 50 2 580.32880 1159.65032 -3.40 28.39 2436 2436 MS2 13/22 Linfeng_20130201_rIgG_1.raw High RVDQLKSDQSR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 565 2.03 0.00 2 0 50 2 666.35577 1331.70427 1.21 16.02 838 838 MS2 10/20 Linfeng_20130201_rIgG_5.raw High IEISELNR Unambiguous 2 2 P35908;P04264 CID 1.0000 0.0000 1 1 551 2.02 0.00 0 26 50 2 487.26892 973.53057 -0.79 34.65 2623 2623 MS2 11/14 Linfeng_20130204_CTCF_2.raw High LRSEIDNVKK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 458 2.02 0.00 2 33 50 2 601.34827 1201.68926 -0.59 17.97 1106 1106 MS2 10/18 Linfeng_20130201_rIgG_2.raw High AEAESLYQSK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 297 2.01 0.00 0 15 50 2 563.27576 1125.54424 1.74 24.14 1930 1930 MS2 14/18 Linfeng_20130201_rIgG_3.raw High AQYEDIAQK Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 360 2.01 0.00 0 17 50 2 533.26440 1065.52153 0.36 24.35 1926 1926 MS2 12/16 Linfeng_20130201_rIgG_4.raw High LALDLEIATYR Unambiguous 3 1 P04264 CID 1.0000 0.0000 1 1 330 2.01 0.00 0 0 8 2 639.35736 1277.70745 -2.02 52.55 4990 4990 MS2 14/20 Linfeng_20130201_rIgG_3.raw High TLLEGEESR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 526 2.01 0.00 0 61 50 2 517.26135 1033.51543 -0.63 26.47 2202 2202 MS2 12/16 Linfeng_20130201_rIgG_10.raw High TLLEGEESR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 552 2.01 0.00 0 19 50 2 517.26093 1033.51457 -1.46 26.84 1727 1727 MS2 12/16 Linfeng_20130204_CTCF_7.raw High TLLEGEESR Unambiguous 1 1 P04264 CID 1.0000 0.0000 1 1 482 2.00 0.00 0 25 50 2 517.26190 1033.51653 0.43 26.54 1759 1759 MS2 12/16 Linfeng_20130204_CTCF_2.raw Q96KK5 Histone H2A type 1-H OS=Homo sapiens GN=HIST1H2AH PE=1 SV=3 - [H2A1H_HUMAN] 64.06 14 1 6 19 0.00 51.75 64.06 6 19 128 13.9 10.89 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High VGAGAPVYLAAVLEYLTAEILELAGNAAR Unambiguous 13 1 Q96KK5 CID 1.0000 0.0000 1 1 170 4.66 0.00 0 0 50 3 972.53381 2915.58689 -0.32 52.77 4417 4417 MS2 30/112 Linfeng_20130204_CTCF_10.raw High VGAGAPVYLAAVLEYLTAEILELAGNAAR Unambiguous 13 1 Q96KK5 CID 1.0000 0.0000 1 1 171 3.55 0.00 0 0 50 4 729.65210 2915.58657 -0.43 52.67 4199 4199 MS2 30/168 Linfeng_20130204_CTCF_6.raw High NDEELNKLLGK Unambiguous 10 2 Q96KK5;Q16777 CID 1.0000 0.0000 1 1 560 3.55 0.00 1 35 50 2 636.84326 1272.67925 -0.18 41.07 3149 3149 MS2 17/20 Linfeng_20130204_CTCF_10.raw High VGAGAPVYLAAVLEYLTAEILELAGNAAR Unambiguous 13 1 Q96KK5 CID 1.0000 0.0000 1 1 180 3.16 0.00 0 4 50 4 729.65094 2915.58193 -2.02 52.81 4421 4421 MS2 31/168 Linfeng_20130204_CTCF_10.raw High VGAGAPVYLAAVLEYLTAEILELAGNAAR Unambiguous 13 1 Q96KK5 CID 1.0000 0.0000 1 1 144 2.90 0.00 0 26 50 3 972.53656 2915.59513 2.50 52.69 4469 4469 MS2 22/112 Linfeng_20130204_CTCF_9.raw High VTIAQGGVLPNIQAVLLPK Unambiguous 11 2 Q96KK5;Q16777 CID 1.0000 0.0000 1 1 20 2.87 0.00 0 27 50 3 644.39301 1931.16446 -2.30 52.76 4415 4415 MS2 17/72 Linfeng_20130204_CTCF_10.raw High HLQLAIR Unambiguous 21 3 Q96KK5;Q16777;P0C0S5 CID 1.0000 0.0000 1 1 33 2.84 0.00 0 1 46 2 425.76617 850.52507 -0.83 34.18 2438 2438 MS2 12/12 Linfeng_20130204_CTCF_10.raw High AGLQFPVGR Unambiguous 19 3 Q96KK5;Q16777;P0C0S5 CID 1.0000 0.0000 1 1 518 2.70 0.00 0 16 50 2 472.76926 944.53124 -0.05 41.16 3159 3159 MS2 14/16 Linfeng_20130204_CTCF_10.raw High AGLQFPVGR Unambiguous 19 3 Q96KK5;Q16777;P0C0S5 CID 1.0000 0.0000 1 1 506 2.64 0.00 0 23 50 2 472.76926 944.53124 -0.05 41.20 2988 2988 MS2 14/16 Linfeng_20130204_CTCF_3.raw High AGLQFPVGR Unambiguous 19 3 Q96KK5;Q16777;P0C0S5 CID 1.0000 0.0000 1 1 525 2.60 0.00 0 12 26 2 472.76910 944.53093 -0.37 41.07 3185 3185 MS2 14/16 Linfeng_20130204_CTCF_8.raw High AGLQFPVGR Unambiguous 19 3 Q96KK5;Q16777;P0C0S5 CID 1.0000 0.0000 1 1 722 2.54 0.00 0 0 1 2 472.76984 944.53240 1.18 42.11 3262 3262 MS2 15/16 Linfeng_20130204_CTCF_10.raw High AGLQFPVGR Unambiguous 19 3 Q96KK5;Q16777;P0C0S5 CID 1.0000 0.0000 1 1 511 2.40 0.00 0 17 50 2 472.76874 944.53020 -1.15 41.10 3201 3201 MS2 14/16 Linfeng_20130204_CTCF_9.raw High HLQLAIR Unambiguous 21 3 Q96KK5;Q16777;P0C0S5 CID 1.0000 0.0000 1 1 47 2.35 0.00 0 11 50 2 425.76605 850.52483 -1.12 32.07 2227 2227 MS2 12/12 Linfeng_20130204_CTCF_10.raw High VTIAQGGVLPNIQAVLLPK Unambiguous 11 2 Q96KK5;Q16777 CID 1.0000 0.0000 1 1 17 2.27 0.00 0 46 50 2 966.08820 1931.16911 0.11 52.83 4422 4422 MS2 15/36 Linfeng_20130204_CTCF_10.raw High HLQLAIR Unambiguous 21 3 Q96KK5;Q16777;P0C0S5 CID 1.0000 0.0000 1 1 41 2.24 0.00 0 7 50 2 425.76563 850.52397 -2.13 33.38 2418 2418 MS2 12/12 Linfeng_20130204_CTCF_9.raw High HLQLAIR Unambiguous 21 3 Q96KK5;Q16777;P0C0S5 CID 1.0000 0.0000 1 1 45 2.20 0.00 0 4 50 2 425.76544 850.52361 -2.56 33.12 2334 2334 MS2 12/12 Linfeng_20130204_CTCF_10.raw High AGLQFPVGR Unambiguous 19 3 Q96KK5;Q16777;P0C0S5 CID 1.0000 0.0000 1 1 752 2.14 0.00 0 23 50 2 472.77063 944.53398 2.86 41.19 2990 2990 MS2 12/16 Linfeng_20130204_CTCF_6.raw High AGLQFPVGR Unambiguous 19 3 Q96KK5;Q16777;P0C0S5 CID 1.0000 0.0000 1 1 754 2.07 0.00 0 39 50 2 472.76978 944.53227 1.05 41.30 2996 2996 MS2 13/16 Linfeng_20130204_CTCF_4.raw High KGNYAER Unambiguous 11 2 Q96KK5;Q16777 CID 1.0000 0.0000 1 1 350 2.06 0.00 1 15 50 2 419.21393 837.42058 -0.95 15.52 313 313 MS2 10/12 Linfeng_20130204_CTCF_10.raw Q16777 Histone H2A type 2-C OS=Homo sapiens GN=HIST2H2AC PE=1 SV=4 - [H2A2C_HUMAN] 63.57 3 1 6 16 0.00 41.24 63.57 6 16 129 14.0 10.90 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High VGAGAPVYMAAVLEYLTAEILELAGNAAR Unambiguous 2 1 Q16777 CID 1.0000 0.0000 1 1 309 3.77 0.00 0 8 50 3 978.51398 2933.52738 -5.76 52.68 4408 4408 MS2 24/112 Linfeng_20130204_CTCF_10.raw High NDEELNKLLGK Unambiguous 10 2 Q96KK5;Q16777 CID 1.0000 0.0000 1 1 560 3.55 0.00 1 35 50 2 636.84326 1272.67925 -0.18 41.07 3149 3149 MS2 17/20 Linfeng_20130204_CTCF_10.raw High VTIAQGGVLPNIQAVLLPK Unambiguous 11 2 Q96KK5;Q16777 CID 1.0000 0.0000 1 1 20 2.87 0.00 0 27 50 3 644.39301 1931.16446 -2.30 52.76 4415 4415 MS2 17/72 Linfeng_20130204_CTCF_10.raw High HLQLAIR Unambiguous 21 3 Q96KK5;Q16777;P0C0S5 CID 1.0000 0.0000 1 1 33 2.84 0.00 0 1 46 2 425.76617 850.52507 -0.83 34.18 2438 2438 MS2 12/12 Linfeng_20130204_CTCF_10.raw High AGLQFPVGR Unambiguous 19 3 Q96KK5;Q16777;P0C0S5 CID 1.0000 0.0000 1 1 518 2.70 0.00 0 16 50 2 472.76926 944.53124 -0.05 41.16 3159 3159 MS2 14/16 Linfeng_20130204_CTCF_10.raw High AGLQFPVGR Unambiguous 19 3 Q96KK5;Q16777;P0C0S5 CID 1.0000 0.0000 1 1 506 2.64 0.00 0 23 50 2 472.76926 944.53124 -0.05 41.20 2988 2988 MS2 14/16 Linfeng_20130204_CTCF_3.raw High AGLQFPVGR Unambiguous 19 3 Q96KK5;Q16777;P0C0S5 CID 1.0000 0.0000 1 1 525 2.60 0.00 0 12 26 2 472.76910 944.53093 -0.37 41.07 3185 3185 MS2 14/16 Linfeng_20130204_CTCF_8.raw High AGLQFPVGR Unambiguous 19 3 Q96KK5;Q16777;P0C0S5 CID 1.0000 0.0000 1 1 722 2.54 0.00 0 0 1 2 472.76984 944.53240 1.18 42.11 3262 3262 MS2 15/16 Linfeng_20130204_CTCF_10.raw High AGLQFPVGR Unambiguous 19 3 Q96KK5;Q16777;P0C0S5 CID 1.0000 0.0000 1 1 511 2.40 0.00 0 17 50 2 472.76874 944.53020 -1.15 41.10 3201 3201 MS2 14/16 Linfeng_20130204_CTCF_9.raw High HLQLAIR Unambiguous 21 3 Q96KK5;Q16777;P0C0S5 CID 1.0000 0.0000 1 1 47 2.35 0.00 0 11 50 2 425.76605 850.52483 -1.12 32.07 2227 2227 MS2 12/12 Linfeng_20130204_CTCF_10.raw High VTIAQGGVLPNIQAVLLPK Unambiguous 11 2 Q96KK5;Q16777 CID 1.0000 0.0000 1 1 17 2.27 0.00 0 46 50 2 966.08820 1931.16911 0.11 52.83 4422 4422 MS2 15/36 Linfeng_20130204_CTCF_10.raw High HLQLAIR Unambiguous 21 3 Q96KK5;Q16777;P0C0S5 CID 1.0000 0.0000 1 1 41 2.24 0.00 0 7 50 2 425.76563 850.52397 -2.13 33.38 2418 2418 MS2 12/12 Linfeng_20130204_CTCF_9.raw High HLQLAIR Unambiguous 21 3 Q96KK5;Q16777;P0C0S5 CID 1.0000 0.0000 1 1 45 2.20 0.00 0 4 50 2 425.76544 850.52361 -2.56 33.12 2334 2334 MS2 12/12 Linfeng_20130204_CTCF_10.raw High AGLQFPVGR Unambiguous 19 3 Q96KK5;Q16777;P0C0S5 CID 1.0000 0.0000 1 1 752 2.14 0.00 0 23 50 2 472.77063 944.53398 2.86 41.19 2990 2990 MS2 12/16 Linfeng_20130204_CTCF_6.raw High AGLQFPVGR Unambiguous 19 3 Q96KK5;Q16777;P0C0S5 CID 1.0000 0.0000 1 1 754 2.07 0.00 0 39 50 2 472.76978 944.53227 1.05 41.30 2996 2996 MS2 13/16 Linfeng_20130204_CTCF_4.raw High KGNYAER Unambiguous 11 2 Q96KK5;Q16777 CID 1.0000 0.0000 1 1 350 2.06 0.00 1 15 50 2 419.21393 837.42058 -0.95 15.52 313 313 MS2 10/12 Linfeng_20130204_CTCF_10.raw P62805 Histone H4 OS=Homo sapiens GN=HIST1H4A PE=1 SV=2 - [H4_HUMAN] 53.40 1 8 8 27 19.19 30.10 4 6 64.89 53.40 8 21 103 11.4 11.36 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High KTVTAmDVVYALK Unambiguous 1 1 P62805 M6(Oxidation) CID 1.0000 0.0000 1 1 364 4.61 0.00 1 2 36 2 727.90015 1454.79302 0.43 43.07 3364 3364 MS2 21/24 Linfeng_20130204_CTCF_10.raw High KTVTAmDVVYALK Unambiguous 1 1 P62805 M6(Oxidation) CID 1.0000 0.0000 1 1 351 4.61 0.00 1 6 36 2 727.90015 1454.79302 0.43 43.49 3409 3409 MS2 21/24 Linfeng_20130204_CTCF_10.raw High KTVTAmDVVYALK Unambiguous 1 1 P62805 M6(Oxidation) CID 1.0000 0.0000 1 1 394 3.98 0.00 1 5 50 2 727.89935 1454.79143 -0.66 42.43 3865 3865 MS2 19/24 Linfeng_20130201_rIgG_10.raw High KTVTAMDVVYALK Unambiguous 1 1 P62805 CID 1.0000 0.0000 1 1 331 3.90 0.00 1 7 50 2 719.90204 1438.79680 -0.47 51.06 4237 4237 MS2 22/24 Linfeng_20130204_CTCF_10.raw High KTVTAmDVVYALK Unambiguous 1 1 P62805 M6(Oxidation) CID 1.0000 0.0000 1 1 401 3.78 0.00 1 3 50 3 485.60181 1454.79087 -1.05 42.38 3860 3860 MS2 27/48 Linfeng_20130201_rIgG_10.raw High KTVTAMDVVYALK Unambiguous 1 1 P62805 CID 1.0000 0.0000 1 1 355 3.77 0.00 1 3 50 3 480.26984 1438.79496 -1.76 50.96 4226 4226 MS2 26/48 Linfeng_20130204_CTCF_10.raw High TVTAmDVVYALK Unambiguous 1 1 P62805 M5(Oxidation) CID 1.0000 0.0000 1 1 422 3.66 0.00 0 8 2 2 663.85168 1326.69609 -1.01 48.16 3922 3922 MS2 19/22 Linfeng_20130204_CTCF_10.raw High DNIQGITKPAIR Unambiguous 1 1 P62805 CID 1.0000 0.0000 1 1 286 3.43 0.00 1 5 50 2 663.38000 1325.75273 -0.69 31.27 2147 2147 MS2 16/22 Linfeng_20130204_CTCF_10.raw High DNIQGITKPAIR Unambiguous 1 1 P62805 CID 1.0000 0.0000 1 1 274 3.39 0.00 1 16 48 2 663.37946 1325.75163 -1.51 32.36 2255 2255 MS2 15/22 Linfeng_20130204_CTCF_10.raw High TVTAmDVVYALK Unambiguous 1 1 P62805 M5(Oxidation) CID 1.0000 0.0000 1 1 385 3.18 0.00 0 10 3 2 663.85217 1326.69707 -0.27 47.57 4431 4431 MS2 19/22 Linfeng_20130201_rIgG_10.raw High VFLENVIR Unambiguous 1 1 P62805 CID 1.0000 0.0000 1 1 325 3.05 0.00 0 0 50 2 495.29218 989.57707 -0.83 47.84 4462 4462 MS2 12/14 Linfeng_20130201_rIgG_10.raw High ISGLIYEETR Unambiguous 1 1 P62805 CID 1.0000 0.0000 1 1 435 2.94 0.00 0 12 50 2 590.81799 1180.62871 6.64 39.67 3000 3000 MS2 17/18 Linfeng_20130204_CTCF_10.raw High RISGLIYEETR Unambiguous 1 1 P62805 CID 1.0000 0.0000 1 1 470 2.90 0.00 1 22 50 2 668.86566 1336.72405 1.54 36.05 2628 2628 MS2 14/20 Linfeng_20130204_CTCF_10.raw High ISGLIYEETR Unambiguous 1 1 P62805 CID 1.0000 0.0000 1 1 479 2.90 0.00 0 3 15 2 590.81470 1180.62212 1.06 38.61 2888 2888 MS2 17/18 Linfeng_20130204_CTCF_10.raw High VFLENVIR Unambiguous 1 1 P62805 CID 1.0000 0.0000 1 1 278 2.88 0.00 0 2 19 2 495.29233 989.57738 -0.52 48.47 3957 3957 MS2 12/14 Linfeng_20130204_CTCF_10.raw High ISGLIYEETR Unambiguous 1 1 P62805 CID 1.0000 0.0000 1 1 477 2.86 0.00 0 13 33 2 590.81458 1180.62187 0.85 39.05 2933 2933 MS2 16/18 Linfeng_20130204_CTCF_10.raw High VFLENVIR Unambiguous 1 1 P62805 CID 1.0000 0.0000 1 1 301 2.83 0.00 0 2 31 2 495.29300 989.57872 0.84 49.55 4072 4072 MS2 12/14 Linfeng_20130204_CTCF_10.raw High ISGLIYEETR Unambiguous 1 1 P62805 CID 1.0000 0.0000 1 1 496 2.72 0.00 0 23 50 2 590.81396 1180.62065 -0.18 37.99 3403 3403 MS2 17/18 Linfeng_20130201_rIgG_10.raw High DAVTYTEHAK Unambiguous 1 1 P62805 CID 1.0000 0.0000 1 1 370 2.72 0.00 0 10 50 2 567.77478 1134.54228 -0.29 19.60 787 787 MS2 13/18 Linfeng_20130204_CTCF_10.raw High KTVTAmDVVYALK Unambiguous 1 1 P62805 M6(Oxidation) CID 1.0000 0.0000 1 1 401 2.66 0.00 1 11 11 3 485.60202 1454.79151 -0.61 43.05 3361 3361 MS2 18/48 Linfeng_20130204_CTCF_10.raw High DNIQGITKPAIR Unambiguous 1 1 P62805 CID 1.0000 0.0000 1 1 256 2.62 0.00 1 13 50 2 663.37939 1325.75151 -1.61 33.02 2323 2323 MS2 10/22 Linfeng_20130204_CTCF_10.raw High RISGLIYEETR Unambiguous 1 1 P62805 CID 1.0000 0.0000 1 1 448 2.51 0.00 1 38 50 2 668.86548 1336.72368 1.26 37.17 2741 2741 MS2 12/20 Linfeng_20130204_CTCF_10.raw High TVTAmDVVYALK Unambiguous 1 1 P62805 M5(Oxidation) CID 1.0000 0.0000 1 1 386 2.49 0.00 0 26 42 2 663.85266 1326.69805 0.47 49.21 4036 4036 MS2 16/22 Linfeng_20130204_CTCF_10.raw High ISGLIYEETR Unambiguous 1 1 P62805 CID 1.0000 0.0000 1 1 504 2.49 0.00 0 16 50 2 590.81427 1180.62126 0.33 39.47 3557 3557 MS2 17/18 Linfeng_20130201_rIgG_10.raw High TVTAmDVVYALKR Unambiguous 1 1 P62805 M5(Oxidation) CID 1.0000 0.0000 1 1 357 2.48 0.00 1 72 45 2 741.90314 1482.79900 0.30 45.31 3610 3610 MS2 14/24 Linfeng_20130204_CTCF_10.raw High DNIQGITKPAIR Unambiguous 1 1 P62805 CID 1.0000 0.0000 1 1 270 2.38 0.00 1 53 50 2 663.37836 1325.74944 -3.17 33.68 2388 2388 MS2 11/22 Linfeng_20130204_CTCF_10.raw Medium DNIQGITKPAIR Unambiguous 1 1 P62805 CID 1.0000 0.0000 1 1 291 2.35 0.00 1 1 19 3 442.58929 1325.75333 -0.23 32.26 2245 2245 MS2 16/44 Linfeng_20130204_CTCF_10.raw P13645 "Keratin, type I cytoskeletal 10 OS=Homo sapiens GN=KRT10 PE=1 SV=6 - [K1C10_HUMAN]" 51.03 2 26 31 542 1045.16 42.81 28 335 640.08 48.12 27 207 584 58.8 5.21 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High AETEcQNTEYQQLLDIK Unambiguous 1 1 P13645 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 316 6.08 0.00 0 1 10 2 1041.98694 2082.96660 0.82 48.65 4544 4544 MS2 24/32 Linfeng_20130201_rIgG_3.raw High GSSGGGcFGGSSGGYGGLGGFGGGSFR Unambiguous 1 1 P13645 C7(Carbamidomethyl) CID 1.0000 0.0000 1 1 58 5.73 0.00 0 0 50 2 1171.99768 2342.98808 1.54 48.54 4096 4096 MS2 32/52 Linfeng_20130204_CTCF_1.raw High GSSGGGcFGGSSGGYGGLGGFGGGSFR Unambiguous 1 1 P13645 C7(Carbamidomethyl) CID 1.0000 0.0000 1 1 61 5.72 0.00 0 0 10 2 1171.99524 2342.98320 -0.54 48.80 4568 4568 MS2 31/52 Linfeng_20130201_rIgG_4.raw High AETEcQNTEYQQLLDIK Unambiguous 1 1 P13645 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 317 5.63 0.00 0 0 24 2 1041.98572 2082.96416 -0.35 48.93 4668 4668 MS2 24/32 Linfeng_20130201_rIgG_7.raw High AETEcQNTEYQQLLDIK Unambiguous 1 1 P13645 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 320 5.57 0.00 0 0 22 2 1041.98816 2082.96904 1.99 48.47 4089 4089 MS2 23/32 Linfeng_20130204_CTCF_1.raw High GSSGGGcFGGSSGGYGGLGGFGGGSFR Unambiguous 1 1 P13645 C7(Carbamidomethyl) CID 1.0000 0.0000 1 1 65 5.56 0.00 0 0 7 2 1171.99512 2342.98296 -0.64 48.41 4589 4589 MS2 31/52 Linfeng_20130201_rIgG_1.raw High AETEcQNTEYQQLLDIK Unambiguous 1 1 P13645 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 313 5.52 0.00 0 0 22 2 1041.98523 2082.96318 -0.82 49.11 3806 3806 MS2 23/32 Linfeng_20130204_CTCF_4.raw High AETEcQNTEYQQLLDIK Unambiguous 1 1 P13645 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 298 5.51 0.00 0 0 14 2 1041.98438 2082.96147 -1.64 48.32 4578 4578 MS2 23/32 Linfeng_20130201_rIgG_1.raw High AETEcQNTEYQQLLDIK Unambiguous 1 1 P13645 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 308 5.43 0.00 0 0 15 2 1041.98511 2082.96294 -0.94 48.96 4633 4633 MS2 23/32 Linfeng_20130201_rIgG_6.raw High AETEcQNTEYQQLLDIK Unambiguous 1 1 P13645 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 307 5.36 0.00 0 0 8 2 1041.98645 2082.96562 0.35 48.70 4556 4556 MS2 24/32 Linfeng_20130201_rIgG_4.raw High GSSGGGcFGGSSGGYGGLGGFGGGSFR Unambiguous 1 1 P13645 C7(Carbamidomethyl) CID 1.0000 0.0000 1 1 66 5.33 0.00 0 0 11 2 1171.99622 2342.98516 0.29 48.75 4556 4556 MS2 32/52 Linfeng_20130201_rIgG_3.raw High AETEcQNTEYQQLLDIK Unambiguous 1 1 P13645 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 324 5.20 0.00 0 3 25 2 1041.98718 2082.96709 1.05 49.10 4074 4074 MS2 23/32 Linfeng_20130204_CTCF_9.raw High AETEcQNTEYQQLLDIK Unambiguous 1 1 P13645 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 308 5.15 0.00 0 0 23 2 1041.98596 2082.96465 -0.12 48.84 4582 4582 MS2 23/32 Linfeng_20130201_rIgG_10.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 347 5.14 0.00 0 0 10 2 998.98950 1996.97173 0.35 45.48 4233 4233 MS2 25/32 Linfeng_20130201_rIgG_1.raw High NQILNLTTDNANILLQIDNAR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 358 5.14 0.00 0 14 50 3 789.75720 2367.25705 -2.41 58.24 5186 5186 MS2 27/80 Linfeng_20130204_CTCF_1.raw High AETEcQNTEYQQLLDIK Unambiguous 1 1 P13645 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 294 5.07 0.00 0 4 34 2 1041.98511 2082.96294 -0.94 48.60 4520 4520 MS2 23/32 Linfeng_20130201_rIgG_2.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 398 5.02 0.00 0 0 50 2 998.99231 1996.97734 3.17 51.74 4439 4439 MS2 25/32 Linfeng_20130204_CTCF_1.raw High GSSGGGcFGGSSGGYGGLGGFGGGSFR Unambiguous 1 1 P13645 C7(Carbamidomethyl) CID 1.0000 0.0000 1 1 45 5.01 0.00 0 4 25 2 1171.99390 2342.98052 -1.69 48.95 4594 4594 MS2 30/52 Linfeng_20130201_rIgG_10.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 371 4.98 0.00 0 17 50 2 998.98999 1996.97270 0.84 52.03 4957 4957 MS2 24/32 Linfeng_20130201_rIgG_9.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 234 4.91 0.00 0 3 50 2 854.39429 1707.78130 5.31 46.37 3543 3543 MS2 24/36 Linfeng_20130204_CTCF_6.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 210 4.89 0.00 0 0 50 2 854.38849 1707.76970 -1.48 44.69 3345 3345 MS2 26/36 Linfeng_20130204_CTCF_4.raw High AETEcQNTEYQQLLDIK Unambiguous 1 1 P13645 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 322 4.87 0.00 0 0 29 2 1041.98718 2082.96709 1.05 48.86 3779 3779 MS2 24/32 Linfeng_20130204_CTCF_3.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 419 4.86 0.00 1 0 12 2 1106.55481 2212.10234 1.95 49.33 4634 4634 MS2 26/36 Linfeng_20130201_rIgG_4.raw High GSSGGGcFGGSSGGYGGLGGFGGGSFR Unambiguous 1 1 P13645 C7(Carbamidomethyl) CID 1.0000 0.0000 1 1 53 4.85 0.00 0 17 5 3 781.66547 2342.98185 -1.12 48.40 4588 4588 MS2 39/104 Linfeng_20130201_rIgG_1.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 391 4.77 0.00 0 5 50 2 998.99078 1996.97429 1.64 51.97 5016 5016 MS2 24/32 Linfeng_20130201_rIgG_7.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 407 4.74 0.00 1 0 5 2 1106.55371 2212.10015 0.96 48.82 4643 4643 MS2 25/36 Linfeng_20130201_rIgG_1.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 357 4.73 0.00 0 0 13 2 998.99017 1996.97307 1.03 45.71 4204 4204 MS2 23/32 Linfeng_20130201_rIgG_4.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 368 4.70 0.00 0 5 50 2 998.98981 1996.97234 0.66 51.96 4982 4982 MS2 24/32 Linfeng_20130201_rIgG_6.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 198 4.70 0.00 0 0 17 2 854.39008 1707.77287 0.38 44.14 4029 4029 MS2 26/36 Linfeng_20130201_rIgG_2.raw High NVQALEIELQSQLALK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 212 4.69 0.00 0 0 50 2 899.00830 1797.00932 -1.33 57.88 5663 5663 MS2 23/30 Linfeng_20130201_rIgG_3.raw High NVQALEIELQSQLALK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 214 4.68 0.00 0 0 50 2 899.00940 1797.01152 -0.11 57.79 5654 5654 MS2 24/30 Linfeng_20130201_rIgG_3.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 398 4.64 0.00 0 5 50 2 998.99158 1996.97588 2.43 52.23 4150 4150 MS2 24/32 Linfeng_20130204_CTCF_6.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 417 4.63 0.00 0 10 50 2 998.99579 1996.98430 6.65 51.96 4941 4941 MS2 23/32 Linfeng_20130201_rIgG_10.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 367 4.62 0.00 0 1 20 2 998.98987 1996.97246 0.72 51.51 4973 4973 MS2 23/32 Linfeng_20130201_rIgG_1.raw High AETEcQNTEYQQLLDIK Unambiguous 1 1 P13645 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 319 4.61 0.00 0 0 14 2 1041.98730 2082.96733 1.17 48.83 4100 4100 MS2 24/32 Linfeng_20130204_CTCF_2.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 383 4.59 0.00 0 0 23 2 998.99054 1996.97380 1.39 51.77 4887 4887 MS2 23/32 Linfeng_20130201_rIgG_2.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 489 4.59 0.00 1 0 22 3 738.03845 2212.10080 1.26 41.89 3797 3797 MS2 30/72 Linfeng_20130201_rIgG_4.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 393 4.57 0.00 0 0 35 2 998.99194 1996.97661 2.80 51.88 4919 4919 MS2 22/32 Linfeng_20130201_rIgG_3.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 208 4.55 0.00 0 15 39 2 854.38989 1707.77251 0.16 58.21 4876 4876 MS2 27/36 Linfeng_20130204_CTCF_6.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 197 4.54 0.00 0 2 24 2 854.38989 1707.77251 0.16 45.23 4198 4198 MS2 23/36 Linfeng_20130201_rIgG_6.raw High AETEcQNTEYQQLLDIK Unambiguous 1 1 P13645 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 332 4.49 0.00 0 7 14 3 694.99268 2082.96347 -0.68 48.68 4529 4529 MS2 32/64 Linfeng_20130201_rIgG_2.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 434 4.44 0.00 0 3 50 2 998.99213 1996.97698 2.98 52.12 4123 4123 MS2 22/32 Linfeng_20130204_CTCF_4.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 437 4.42 0.00 0 15 50 2 998.99176 1996.97624 2.62 52.18 4391 4391 MS2 23/32 Linfeng_20130204_CTCF_7.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 393 4.41 0.00 0 0 50 2 998.99298 1996.97869 3.84 45.60 3784 3784 MS2 23/32 Linfeng_20130204_CTCF_1.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 343 4.39 0.00 0 0 21 2 998.98944 1996.97161 0.29 45.68 4204 4204 MS2 22/32 Linfeng_20130201_rIgG_3.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 495 4.38 0.00 1 7 50 3 738.03900 2212.10245 2.00 41.94 3906 3906 MS2 30/72 Linfeng_20130201_rIgG_7.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 505 4.37 0.00 1 11 46 3 738.03973 2212.10465 3.00 41.70 3777 3777 MS2 31/72 Linfeng_20130201_rIgG_2.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 211 4.37 0.00 0 1 12 2 854.39075 1707.77422 1.16 44.74 3557 3557 MS2 25/36 Linfeng_20130204_CTCF_7.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 490 4.36 0.00 1 8 13 3 738.03882 2212.10190 1.75 49.52 3872 3872 MS2 29/72 Linfeng_20130204_CTCF_6.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 498 4.35 0.00 1 8 3 3 738.03784 2212.09897 0.43 49.21 4620 4620 MS2 28/72 Linfeng_20130201_rIgG_4.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 194 4.35 0.00 0 26 6 2 854.39154 1707.77580 2.09 44.69 3608 3608 MS2 26/36 Linfeng_20130204_CTCF_8.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 199 4.35 0.00 0 0 18 2 854.38971 1707.77214 -0.05 44.68 3346 3346 MS2 25/36 Linfeng_20130204_CTCF_3.raw High AETEcQNTEYQQLLDIK Unambiguous 1 1 P13645 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 333 4.33 0.00 0 8 20 3 694.99268 2082.96347 -0.68 48.36 4582 4582 MS2 31/64 Linfeng_20130201_rIgG_1.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 200 4.32 0.00 0 16 37 2 854.39209 1707.77690 2.74 44.97 3573 3573 MS2 24/36 Linfeng_20130204_CTCF_10.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 351 4.30 0.00 0 6 50 2 998.98895 1996.97063 -0.20 51.81 4925 4925 MS2 22/32 Linfeng_20130201_rIgG_4.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 200 4.29 0.00 0 1 15 2 854.38940 1707.77153 -0.41 44.28 3649 3649 MS2 26/36 Linfeng_20130204_CTCF_1.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 211 4.29 0.00 0 18 29 2 854.39044 1707.77361 0.81 45.32 3715 3715 MS2 24/36 Linfeng_20130204_CTCF_2.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 220 4.29 0.00 0 1 3 2 854.39099 1707.77471 1.45 45.31 3429 3429 MS2 27/36 Linfeng_20130204_CTCF_6.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 198 4.28 0.00 0 9 17 2 854.39063 1707.77397 1.02 44.74 3581 3581 MS2 25/36 Linfeng_20130204_CTCF_9.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 204 4.25 0.00 0 13 50 2 854.39148 1707.77568 2.02 48.01 3712 3712 MS2 21/36 Linfeng_20130204_CTCF_6.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 512 4.23 0.00 1 4 1 3 738.03693 2212.09623 -0.81 49.36 4631 4631 MS2 27/72 Linfeng_20130201_rIgG_3.raw High GSSGGGcFGGSSGGYGGLGGFGGGSFR Unambiguous 1 1 P13645 C7(Carbamidomethyl) CID 1.0000 0.0000 1 1 74 4.23 0.00 0 10 6 3 781.66595 2342.98331 -0.49 48.78 4565 4565 MS2 37/104 Linfeng_20130201_rIgG_4.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 213 4.23 0.00 0 8 50 2 854.38922 1707.77117 -0.62 45.22 4142 4142 MS2 26/36 Linfeng_20130201_rIgG_2.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 206 4.22 0.00 0 0 34 2 854.38873 1707.77019 -1.20 44.39 4061 4061 MS2 24/36 Linfeng_20130201_rIgG_4.raw High SQYEQLAEQNRKDAEAWFNEK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 380 4.20 0.00 2 6 35 3 862.07538 2584.21158 2.02 45.78 3763 3763 MS2 31/80 Linfeng_20130204_CTCF_2.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 197 4.15 0.00 0 5 24 2 854.38916 1707.77104 -0.70 44.51 4088 4088 MS2 24/36 Linfeng_20130201_rIgG_9.raw High AETEcQNTEYQQLLDIK Unambiguous 1 1 P13645 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 341 4.15 0.00 0 6 36 3 694.99426 2082.96823 1.60 48.49 4092 4092 MS2 22/64 Linfeng_20130204_CTCF_1.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 497 4.13 0.00 1 2 50 3 738.03900 2212.10245 2.00 41.94 3820 3820 MS2 32/72 Linfeng_20130201_rIgG_9.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 202 4.13 0.00 0 6 50 2 854.38989 1707.77251 0.16 44.34 4063 4063 MS2 25/36 Linfeng_20130201_rIgG_3.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 199 4.10 0.00 0 0 50 2 854.38922 1707.77117 -0.62 44.56 4125 4125 MS2 25/36 Linfeng_20130201_rIgG_6.raw High NVQALEIELQSQLALK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 213 4.10 0.00 0 66 50 2 899.00824 1797.00920 -1.40 57.81 5679 5679 MS2 20/30 Linfeng_20130201_rIgG_4.raw High NVQALEIELQSQLALK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 225 4.10 0.00 0 52 50 2 899.00940 1797.01152 -0.11 57.77 4834 4834 MS2 21/30 Linfeng_20130204_CTCF_6.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 208 4.09 0.00 0 10 12 2 854.38928 1707.77129 -0.55 44.29 4033 4033 MS2 24/36 Linfeng_20130201_rIgG_5.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 488 4.08 0.00 1 4 28 3 738.03894 2212.10227 1.92 41.70 3816 3816 MS2 35/72 Linfeng_20130201_rIgG_1.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 200 4.08 0.00 0 9 50 2 854.38965 1707.77202 -0.12 51.97 4941 4941 MS2 25/36 Linfeng_20130201_rIgG_4.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 209 4.07 0.00 0 0 11 2 854.39026 1707.77324 0.59 44.53 4177 4177 MS2 25/36 Linfeng_20130201_rIgG_7.raw High AETEcQNTEYQQLLDIK Unambiguous 1 1 P13645 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 336 4.01 0.00 0 3 33 3 694.99463 2082.96933 2.13 48.98 3792 3792 MS2 27/64 Linfeng_20130204_CTCF_3.raw High GSSGGGcFGGSSGGYGGLGGFGGGSFR Unambiguous 1 1 P13645 C7(Carbamidomethyl) CID 1.0000 0.0000 1 1 79 4.01 0.00 0 24 19 3 781.66663 2342.98532 0.37 48.88 4106 4106 MS2 30/104 Linfeng_20130204_CTCF_2.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 206 3.99 0.00 0 1 8 2 854.39044 1707.77361 0.81 44.48 3626 3626 MS2 25/36 Linfeng_20130204_CTCF_2.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 509 3.98 0.00 0 9 50 3 666.33032 1996.97641 2.70 51.91 4922 4922 MS2 32/64 Linfeng_20130201_rIgG_3.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 494 3.95 0.00 1 6 4 3 738.03748 2212.09787 -0.07 49.41 4657 4657 MS2 27/72 Linfeng_20130201_rIgG_9.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 491 3.94 0.00 1 0 38 3 738.03851 2212.10099 1.34 42.01 3859 3859 MS2 31/72 Linfeng_20130201_rIgG_6.raw High ISSSKGSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 435 3.93 0.00 1 6 20 3 737.35468 2210.04947 0.96 40.47 3683 3683 MS2 34/92 Linfeng_20130201_rIgG_1.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 486 3.93 0.00 1 2 46 2 717.88757 1434.76787 -1.49 36.55 2679 2679 MS2 17/20 Linfeng_20130204_CTCF_10.raw High AETEcQNTEYQQLLDIK Unambiguous 1 1 P13645 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 321 3.92 0.00 0 6 13 3 694.99353 2082.96604 0.55 48.66 4545 4545 MS2 33/64 Linfeng_20130201_rIgG_3.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 196 3.91 0.00 0 9 50 2 854.39148 1707.77568 2.02 48.23 3735 3735 MS2 22/36 Linfeng_20130204_CTCF_6.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 495 3.91 0.00 1 3 50 3 738.03802 2212.09952 0.68 42.17 3313 3313 MS2 24/72 Linfeng_20130204_CTCF_9.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 499 3.89 0.00 1 5 50 2 717.88898 1434.77068 0.47 36.16 2478 2478 MS2 17/20 Linfeng_20130204_CTCF_3.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 490 3.88 0.00 1 5 32 3 738.03882 2212.10190 1.75 41.87 3806 3806 MS2 31/72 Linfeng_20130201_rIgG_3.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 206 3.88 0.00 0 2 6 2 854.39020 1707.77312 0.52 44.14 4079 4079 MS2 25/36 Linfeng_20130201_rIgG_1.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 212 3.88 0.00 0 5 12 2 854.38910 1707.77092 -0.77 44.52 4136 4136 MS2 25/36 Linfeng_20130201_rIgG_8.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 457 3.88 0.00 1 28 39 2 717.88824 1434.76921 -0.55 35.73 2990 2990 MS2 17/20 Linfeng_20130201_rIgG_5.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 364 3.87 0.00 0 4 50 2 998.98737 1996.96745 -1.79 51.97 4438 4438 MS2 22/32 Linfeng_20130204_CTCF_2.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 451 3.87 0.00 0 13 12 3 666.32843 1996.97074 -0.14 51.58 4981 4981 MS2 29/64 Linfeng_20130201_rIgG_1.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 209 3.86 0.00 0 0 9 2 854.38922 1707.77117 -0.62 44.46 4079 4079 MS2 27/36 Linfeng_20130201_rIgG_10.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 485 3.86 0.00 1 4 4 3 738.03845 2212.10080 1.26 49.34 4642 4642 MS2 26/72 Linfeng_20130201_rIgG_10.raw High GSSGGGcFGGSSGGYGGLGGFGGGSFR Unambiguous 1 1 P13645 C7(Carbamidomethyl) CID 1.0000 0.0000 1 1 53 3.85 0.00 0 23 16 3 781.66534 2342.98148 -1.27 48.83 4581 4581 MS2 32/104 Linfeng_20130201_rIgG_10.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 211 3.83 0.00 0 11 32 2 854.38867 1707.77007 -1.27 45.35 4169 4169 MS2 24/36 Linfeng_20130201_rIgG_3.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 462 3.83 0.00 1 2 50 2 717.88885 1434.77043 0.30 36.07 3253 3253 MS2 17/20 Linfeng_20130201_rIgG_6.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 513 3.83 0.00 1 2 13 3 738.03931 2212.10337 2.42 42.13 3089 3089 MS2 27/72 Linfeng_20130204_CTCF_6.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 488 3.82 0.00 1 31 50 2 717.88855 1434.76982 -0.12 35.81 3166 3166 MS2 17/20 Linfeng_20130201_rIgG_4.raw High SQYEQLAEQNRKDAEAWFNEK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 347 3.82 0.00 2 0 4 3 862.07294 2584.20426 -0.82 45.60 4197 4197 MS2 29/80 Linfeng_20130201_rIgG_5.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 225 3.81 0.00 0 12 50 2 854.39056 1707.77385 0.95 44.31 3322 3322 MS2 22/36 Linfeng_20130204_CTCF_6.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 199 3.81 0.00 0 31 50 2 854.38898 1707.77068 -0.91 58.32 5130 5130 MS2 22/36 Linfeng_20130204_CTCF_7.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 454 3.81 0.00 1 0 42 2 1106.55286 2212.09844 0.19 49.77 3900 3900 MS2 22/36 Linfeng_20130204_CTCF_6.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 515 3.80 0.00 0 20 50 3 666.33014 1996.97586 2.43 51.82 4893 4893 MS2 32/64 Linfeng_20130201_rIgG_2.raw High AETEcQNTEYQQLLDIK Unambiguous 1 1 P13645 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 323 3.79 0.00 0 3 11 3 694.99329 2082.96531 0.20 48.73 4560 4560 MS2 30/64 Linfeng_20130201_rIgG_4.raw High SQYEQLAEQNR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 298 3.78 0.00 0 0 50 2 683.32373 1365.64018 0.60 26.62 2060 2060 MS2 17/20 Linfeng_20130201_rIgG_5.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 535 3.78 0.00 1 8 50 2 717.88843 1434.76958 -0.29 35.49 2750 2750 MS2 17/20 Linfeng_20130204_CTCF_1.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 455 3.77 0.00 0 30 50 2 998.99750 1996.98772 8.36 52.27 4425 4425 MS2 17/32 Linfeng_20130204_CTCF_9.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 203 3.77 0.00 0 14 28 2 854.39014 1707.77300 0.45 51.85 4991 4991 MS2 25/36 Linfeng_20130201_rIgG_5.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 219 3.77 0.00 0 38 50 2 854.39020 1707.77312 0.52 45.20 3744 3744 MS2 20/36 Linfeng_20130204_CTCF_1.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 206 3.76 0.00 0 26 50 2 854.38940 1707.77153 -0.41 51.93 4946 4946 MS2 25/36 Linfeng_20130201_rIgG_9.raw High VTmQNLNDRLASYLDKVR Unambiguous 3 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 493 3.75 0.00 2 19 7 3 718.04352 2152.11600 -0.93 47.44 4430 4430 MS2 24/68 Linfeng_20130201_rIgG_5.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 485 3.74 0.00 1 9 50 2 717.88861 1434.76995 -0.04 35.73 3174 3174 MS2 17/20 Linfeng_20130201_rIgG_3.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 491 3.72 0.00 1 4 50 3 738.03845 2212.10080 1.26 41.70 3385 3385 MS2 28/72 Linfeng_20130204_CTCF_1.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 217 3.71 0.00 0 10 50 2 854.39056 1707.77385 0.95 51.94 4924 4924 MS2 27/36 Linfeng_20130201_rIgG_3.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 483 3.70 0.00 1 22 50 2 717.88837 1434.76946 -0.38 35.93 3290 3290 MS2 17/20 Linfeng_20130201_rIgG_7.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 527 3.69 0.00 1 18 50 2 717.88739 1434.76750 -1.74 35.90 2746 2746 MS2 17/20 Linfeng_20130204_CTCF_2.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 385 3.69 0.00 0 0 50 2 998.98981 1996.97234 0.66 45.82 3767 3767 MS2 21/32 Linfeng_20130204_CTCF_2.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 209 3.68 0.00 0 52 50 2 854.38928 1707.77129 -0.55 52.04 4403 4403 MS2 18/36 Linfeng_20130204_CTCF_9.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 488 3.68 0.00 1 8 40 2 717.88843 1434.76958 -0.29 35.28 3145 3145 MS2 17/20 Linfeng_20130201_rIgG_1.raw High ALEESNYELEGK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 284 3.66 0.00 0 0 50 2 691.32697 1381.64665 -1.13 32.27 2430 2430 MS2 18/22 Linfeng_20130204_CTCF_1.raw High ISSSKGSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 440 3.64 0.00 1 10 50 3 737.35510 2210.05075 1.54 40.97 3805 3805 MS2 31/92 Linfeng_20130201_rIgG_7.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 397 3.64 0.00 0 3 32 2 998.98907 1996.97087 -0.07 51.96 5003 5003 MS2 23/32 Linfeng_20130201_rIgG_5.raw High LENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 526 3.64 0.00 0 18 50 2 583.29620 1165.58513 0.27 29.81 2174 2174 MS2 15/16 Linfeng_20130204_CTCF_1.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 256 3.63 0.00 0 4 50 2 854.39417 1707.78105 5.17 52.06 4447 4447 MS2 20/36 Linfeng_20130204_CTCF_2.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 530 3.63 0.00 1 13 50 2 717.88849 1434.76970 -0.21 36.36 2715 2715 MS2 17/20 Linfeng_20130204_CTCF_9.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 439 3.61 0.00 0 5 50 2 998.99652 1996.98577 7.38 52.10 4120 4120 MS2 20/32 Linfeng_20130204_CTCF_3.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 255 3.60 0.00 0 49 50 2 854.39630 1707.78533 7.67 52.10 4345 4345 MS2 22/36 Linfeng_20130204_CTCF_10.raw High ISSSKGSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 433 3.59 0.00 1 5 37 3 737.35406 2210.04764 0.13 40.84 3686 3686 MS2 35/92 Linfeng_20130201_rIgG_4.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 478 3.59 0.00 1 5 50 2 717.88989 1434.77251 1.75 36.38 2693 2693 MS2 17/20 Linfeng_20130204_CTCF_7.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 501 3.58 0.00 1 2 50 3 738.03772 2212.09861 0.26 41.85 3806 3806 MS2 29/72 Linfeng_20130201_rIgG_10.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 497 3.58 0.00 1 27 50 2 717.88983 1434.77239 1.66 35.39 3134 3134 MS2 17/20 Linfeng_20130201_rIgG_2.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 193 3.57 0.00 0 12 50 2 854.38770 1707.76811 -2.41 58.32 5732 5732 MS2 24/36 Linfeng_20130201_rIgG_9.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 493 3.56 0.00 1 14 50 3 738.03790 2212.09916 0.51 42.17 3288 3288 MS2 25/72 Linfeng_20130204_CTCF_7.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 237 3.56 0.00 0 7 50 2 854.39502 1707.78276 6.17 51.95 4940 4940 MS2 22/36 Linfeng_20130201_rIgG_10.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 509 3.55 0.00 1 8 47 2 717.88861 1434.76995 -0.04 36.29 2672 2672 MS2 17/20 Linfeng_20130204_CTCF_8.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 489 3.55 0.00 1 5 16 3 738.03851 2212.10099 1.34 49.34 4720 4720 MS2 26/72 Linfeng_20130201_rIgG_7.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 218 3.54 0.00 0 25 10 2 854.38916 1707.77104 -0.70 45.29 4158 4158 MS2 24/36 Linfeng_20130201_rIgG_5.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 203 3.53 0.00 0 0 50 2 854.38806 1707.76885 -1.98 45.63 4211 4211 MS2 22/36 Linfeng_20130201_rIgG_9.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 448 3.52 0.00 0 9 50 3 666.32831 1996.97037 -0.33 51.87 4931 4931 MS2 31/64 Linfeng_20130201_rIgG_4.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 515 3.50 0.00 1 12 50 2 717.88916 1434.77104 0.73 36.31 2488 2488 MS2 17/20 Linfeng_20130204_CTCF_4.raw High ISSSKGSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 437 3.50 0.00 1 32 50 3 737.35437 2210.04856 0.54 40.49 3652 3652 MS2 34/92 Linfeng_20130201_rIgG_2.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 217 3.49 0.00 0 22 50 2 854.39069 1707.77410 1.09 51.99 4372 4372 MS2 21/36 Linfeng_20130204_CTCF_7.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 502 3.49 0.00 1 5 9 3 738.03766 2212.09842 0.18 49.59 4137 4137 MS2 29/72 Linfeng_20130204_CTCF_9.raw High ISSSKGSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 431 3.48 0.00 1 0 50 3 737.35455 2210.04911 0.79 41.05 3727 3727 MS2 33/92 Linfeng_20130201_rIgG_9.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 218 3.47 0.00 0 17 50 2 854.38855 1707.76982 -1.41 45.43 4174 4174 MS2 23/36 Linfeng_20130201_rIgG_4.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 224 3.47 0.00 0 22 50 2 854.39056 1707.77385 0.95 51.85 4113 4113 MS2 22/36 Linfeng_20130204_CTCF_6.raw High ISSSKGSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 440 3.46 0.00 1 59 50 3 737.35431 2210.04837 0.46 40.98 3753 3753 MS2 28/92 Linfeng_20130201_rIgG_6.raw High ISSSKGSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 409 3.45 0.00 1 0 12 3 737.35388 2210.04709 -0.12 40.84 3600 3600 MS2 33/92 Linfeng_20130201_rIgG_5.raw High SQYEQLAEQNR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 322 3.45 0.00 0 5 50 2 683.32269 1365.63811 -0.92 27.28 2126 2126 MS2 17/20 Linfeng_20130201_rIgG_5.raw High SQYEQLAEQNR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 335 3.45 0.00 0 9 50 2 683.32440 1365.64153 1.58 27.22 2286 2286 MS2 17/20 Linfeng_20130201_rIgG_3.raw High AETEcQNTEYQQLLDIK Unambiguous 1 1 P13645 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 322 3.43 0.00 0 14 14 3 694.99353 2082.96604 0.55 48.85 4102 4102 MS2 22/64 Linfeng_20130204_CTCF_2.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 495 3.41 0.00 1 14 50 2 717.88763 1434.76799 -1.40 36.00 3214 3214 MS2 17/20 Linfeng_20130201_rIgG_9.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 498 3.39 0.00 1 4 3 3 738.03778 2212.09879 0.35 49.03 4154 4154 MS2 25/72 Linfeng_20130204_CTCF_1.raw High SQYEQLAEQNRKDAEAWFNEK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 393 3.38 0.00 2 0 28 3 862.07581 2584.21286 2.51 45.76 4210 4210 MS2 28/80 Linfeng_20130201_rIgG_4.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 501 3.37 0.00 1 22 47 3 738.03784 2212.09897 0.43 41.94 3362 3362 MS2 27/72 Linfeng_20130204_CTCF_2.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 510 3.37 0.00 1 21 50 3 478.92780 1434.76883 -0.81 35.90 3158 3158 MS2 18/40 Linfeng_20130201_rIgG_8.raw High NVQALEIELQSQLALK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 245 3.37 0.00 0 25 50 2 899.00739 1797.00749 -2.35 57.82 4812 4812 MS2 20/30 Linfeng_20130204_CTCF_3.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 533 3.36 0.00 1 15 47 2 717.88855 1434.76982 -0.12 36.21 2463 2463 MS2 17/20 Linfeng_20130204_CTCF_6.raw High LKYENEVALR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 422 3.36 0.00 1 13 50 3 412.23056 1234.67713 -1.57 30.39 2658 2658 MS2 18/36 Linfeng_20130201_rIgG_1.raw High NVQALEIELQSQLALK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 221 3.35 0.00 0 0 50 2 899.00739 1797.00749 -2.35 57.77 5703 5703 MS2 21/30 Linfeng_20130201_rIgG_1.raw High NVSTGDVNVEMNAAPGVDLTQLLNNMR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 491 3.34 0.00 0 0 30 3 958.13452 2872.38901 -1.36 58.36 4891 4891 MS2 25/104 Linfeng_20130204_CTCF_6.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 210 3.34 0.00 0 0 50 2 854.39148 1707.77568 2.02 43.74 3450 3450 MS2 18/36 Linfeng_20130204_CTCF_7.raw High SQYEQLAEQNRK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 475 3.34 0.00 1 8 50 2 747.37109 1493.73491 0.38 23.44 1846 1846 MS2 15/22 Linfeng_20130201_rIgG_3.raw High NVQALEIELQSQLALK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 245 3.33 0.00 0 33 50 3 599.67468 1797.00949 -1.24 58.14 5682 5682 MS2 23/60 Linfeng_20130201_rIgG_2.raw High SQYEQLAEQNR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 305 3.33 0.00 0 19 50 2 683.32214 1365.63701 -1.73 26.28 2167 2167 MS2 17/20 Linfeng_20130201_rIgG_2.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 489 3.32 0.00 1 9 50 2 717.88770 1434.76811 -1.32 35.85 3188 3188 MS2 17/20 Linfeng_20130201_rIgG_10.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 523 3.29 0.00 1 22 28 2 717.88843 1434.76958 -0.29 35.97 3165 3165 MS2 17/20 Linfeng_20130201_rIgG_8.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 547 3.29 0.00 1 30 50 2 717.88983 1434.77239 1.66 37.08 3326 3326 MS2 17/20 Linfeng_20130201_rIgG_1.raw High SQYEQLAEQNR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 334 3.28 0.00 0 10 50 2 683.32288 1365.63848 -0.66 26.47 1780 1780 MS2 16/20 Linfeng_20130204_CTCF_1.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 496 3.24 0.00 0 12 50 3 666.32977 1996.97477 1.87 52.12 4998 4998 MS2 30/64 Linfeng_20130201_rIgG_6.raw High RVLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 319 3.23 0.00 1 5 16 2 594.35419 1187.70110 1.37 38.34 3421 3421 MS2 14/18 Linfeng_20130201_rIgG_4.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 420 3.21 0.00 1 0 9 2 1106.55212 2212.09697 -0.47 49.40 4636 4636 MS2 18/36 Linfeng_20130201_rIgG_3.raw High LKYENEVALR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 465 3.21 0.00 1 22 50 2 617.84320 1234.67912 0.05 31.64 2765 2765 MS2 16/18 Linfeng_20130201_rIgG_2.raw High SQYEQLAEQNRK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 441 3.21 0.00 1 51 50 2 747.37103 1493.73479 0.30 22.47 1701 1701 MS2 13/22 Linfeng_20130201_rIgG_2.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 310 3.20 0.00 1 1 50 2 532.80969 1064.61211 2.06 32.85 2123 2123 MS2 15/16 Linfeng_20130204_CTCF_6.raw High SQYEQLAEQNRKDAEAWFNEK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 374 3.20 0.00 2 4 23 3 862.07513 2584.21085 1.73 46.06 3511 3511 MS2 29/80 Linfeng_20130204_CTCF_6.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 209 3.20 0.00 0 23 23 2 854.39038 1707.77349 0.73 46.46 4304 4304 MS2 18/36 Linfeng_20130201_rIgG_5.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 521 3.19 0.00 1 6 23 3 478.92780 1434.76883 -0.81 36.38 3255 3255 MS2 23/40 Linfeng_20130201_rIgG_1.raw High VLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 393 3.19 0.00 0 8 50 2 516.30261 1031.59795 -0.39 40.46 2908 2908 MS2 14/16 Linfeng_20130204_CTCF_6.raw High SQYEQLAEQNR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 319 3.18 0.00 0 0 50 2 683.32281 1365.63835 -0.75 26.56 2222 2222 MS2 16/20 Linfeng_20130201_rIgG_9.raw High ALEESNYELEGK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 270 3.18 0.00 0 0 50 2 691.32660 1381.64592 -1.66 31.32 2332 2332 MS2 15/22 Linfeng_20130204_CTCF_1.raw High SQYEQLAEQNR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 316 3.17 0.00 0 0 50 2 683.32385 1365.64043 0.77 27.59 1610 1610 MS2 17/20 Linfeng_20130204_CTCF_6.raw High ALEESNYELEGK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 292 3.17 0.00 0 14 50 2 691.32739 1381.64751 -0.52 31.86 2251 2251 MS2 17/22 Linfeng_20130204_CTCF_7.raw High LENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 513 3.16 0.00 0 12 50 2 583.29608 1165.58489 0.06 30.03 2606 2606 MS2 15/16 Linfeng_20130201_rIgG_3.raw High RVLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 252 3.16 0.00 1 24 50 2 594.35486 1187.70244 2.50 38.59 2707 2707 MS2 15/18 Linfeng_20130204_CTCF_6.raw High ISSSKGSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 406 3.15 0.00 1 0 31 3 737.35333 2210.04544 -0.87 40.74 3687 3687 MS2 36/92 Linfeng_20130201_rIgG_3.raw High QSVEADINGLR Unambiguous 5 1 P13645 CID 1.0000 0.0000 1 1 474 3.15 0.00 0 2 37 2 601.31287 1201.61846 1.04 38.04 2648 2648 MS2 17/20 Linfeng_20130204_CTCF_6.raw High NVQALEIELQSQLALK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 258 3.15 0.00 0 12 50 3 599.67419 1797.00803 -2.05 57.96 5722 5722 MS2 24/60 Linfeng_20130201_rIgG_1.raw High SQYEQLAEQNR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 297 3.14 0.00 0 0 50 2 683.32330 1365.63933 -0.03 26.29 2182 2182 MS2 17/20 Linfeng_20130201_rIgG_1.raw High RVLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 318 3.13 0.00 1 29 50 2 594.35126 1187.69524 -3.56 37.88 2990 2990 MS2 13/18 Linfeng_20130204_CTCF_1.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 432 3.13 0.00 1 0 30 2 1106.55554 2212.10381 2.62 49.25 4599 4599 MS2 20/36 Linfeng_20130201_rIgG_2.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 526 3.13 0.00 1 15 50 3 478.92761 1434.76828 -1.20 35.89 3286 3286 MS2 21/40 Linfeng_20130201_rIgG_7.raw High QSLEASLAETEGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 461 3.13 0.00 0 21 50 2 695.84528 1390.68328 1.69 38.52 2908 2908 MS2 20/24 Linfeng_20130204_CTCF_7.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 494 3.13 0.00 1 3 7 3 738.03918 2212.10300 2.25 49.59 4110 4110 MS2 25/72 Linfeng_20130204_CTCF_7.raw High VLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 367 3.12 0.00 0 31 50 2 516.30267 1031.59807 -0.27 40.15 3720 3720 MS2 14/16 Linfeng_20130201_rIgG_7.raw High QSVEADINGLR Unambiguous 5 1 P13645 CID 1.0000 0.0000 1 1 509 3.12 0.00 0 26 50 2 601.31213 1201.61699 -0.18 38.24 2850 2850 MS2 15/20 Linfeng_20130204_CTCF_10.raw High QSVEADINGLR Unambiguous 5 1 P13645 CID 1.0000 0.0000 1 1 478 3.11 0.00 0 25 50 2 601.31274 1201.61821 0.84 38.04 2666 2666 MS2 16/20 Linfeng_20130204_CTCF_3.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 516 3.11 0.00 0 13 50 3 666.33014 1996.97586 2.43 51.77 4442 4442 MS2 28/64 Linfeng_20130204_CTCF_1.raw High LKYENEVALR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 463 3.10 0.00 1 10 50 2 617.84271 1234.67815 -0.74 31.52 2771 2771 MS2 15/18 Linfeng_20130201_rIgG_1.raw High ALEESNYELEGK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 280 3.10 0.00 0 8 50 2 691.32684 1381.64641 -1.31 32.53 2417 2417 MS2 18/22 Linfeng_20130204_CTCF_2.raw High VLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 380 3.09 0.00 0 9 37 2 516.30255 1031.59783 -0.51 40.24 3633 3633 MS2 14/16 Linfeng_20130201_rIgG_8.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 235 3.08 0.00 0 9 26 3 569.92828 1707.77030 -1.13 44.54 4084 4084 MS2 23/72 Linfeng_20130201_rIgG_3.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 186 3.08 0.00 0 15 50 2 854.38959 1707.77190 -0.20 58.30 5729 5729 MS2 21/36 Linfeng_20130201_rIgG_4.raw High SQYEQLAEQNR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 314 3.08 0.00 0 0 50 2 683.32281 1365.63835 -0.75 27.25 2294 2294 MS2 16/20 Linfeng_20130201_rIgG_10.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 494 3.08 0.00 1 5 3 3 738.03772 2212.09861 0.26 49.39 4166 4166 MS2 24/72 Linfeng_20130204_CTCF_2.raw High QSVEADINGLR Unambiguous 5 1 P13645 CID 1.0000 0.0000 1 1 496 3.08 0.00 0 12 50 2 601.31232 1201.61736 0.13 38.24 2879 2879 MS2 16/20 Linfeng_20130204_CTCF_7.raw High SQYEQLAEQNRK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 478 3.07 0.00 1 0 50 2 747.37274 1493.73821 2.59 23.71 1235 1235 MS2 16/22 Linfeng_20130204_CTCF_6.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 511 3.07 0.00 1 16 50 3 478.92783 1434.76892 -0.75 35.80 3183 3183 MS2 21/40 Linfeng_20130201_rIgG_10.raw High QSVEADINGLRR Unambiguous 5 1 P13645 CID 1.0000 0.0000 1 1 537 3.06 0.00 1 24 50 2 679.36328 1357.71929 0.71 34.30 2270 2270 MS2 15/22 Linfeng_20130204_CTCF_6.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 514 3.06 0.00 1 5 8 3 478.92780 1434.76883 -0.81 35.83 3168 3168 MS2 24/40 Linfeng_20130201_rIgG_4.raw High SQYEQLAEQNRK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 440 3.06 0.00 1 0 50 2 747.37177 1493.73625 1.28 23.53 1870 1870 MS2 16/22 Linfeng_20130201_rIgG_6.raw High ALEESNYELEGK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 293 3.05 0.00 0 12 50 2 691.32782 1381.64836 0.10 31.19 2721 2721 MS2 18/22 Linfeng_20130201_rIgG_2.raw High SQYEQLAEQNR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 321 3.04 0.00 0 0 50 2 683.32220 1365.63713 -1.64 26.52 2209 2209 MS2 17/20 Linfeng_20130201_rIgG_3.raw High ALEESNYELEGK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 277 3.04 0.00 0 16 50 2 691.32709 1381.64690 -0.96 31.63 2329 2329 MS2 16/22 Linfeng_20130204_CTCF_2.raw High VLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 356 3.04 0.00 0 7 50 2 516.30261 1031.59795 -0.39 40.26 3646 3646 MS2 14/16 Linfeng_20130201_rIgG_9.raw High QSLEASLAETEGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 428 3.03 0.00 0 18 50 2 695.84412 1390.68096 0.02 38.75 3079 3079 MS2 20/24 Linfeng_20130204_CTCF_1.raw High SQYEQLAEQNR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 323 3.03 0.00 0 14 50 2 683.32446 1365.64165 1.67 26.91 2253 2253 MS2 16/20 Linfeng_20130201_rIgG_1.raw High ALEESNYELEGK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 333 3.03 0.00 0 0 50 2 691.32910 1381.65093 1.96 32.13 2814 2814 MS2 18/22 Linfeng_20130201_rIgG_2.raw High SQYEQLAEQNRK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 449 3.02 0.00 1 0 50 2 747.37061 1493.73393 -0.27 23.72 1846 1846 MS2 15/22 Linfeng_20130201_rIgG_4.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 508 3.02 0.00 1 9 17 3 478.92786 1434.76902 -0.69 35.28 3144 3144 MS2 21/40 Linfeng_20130201_rIgG_1.raw High VLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 380 3.02 0.00 0 10 22 2 516.30267 1031.59807 -0.27 40.83 3688 3688 MS2 14/16 Linfeng_20130201_rIgG_2.raw High QSVEADINGLR Unambiguous 5 1 P13645 CID 1.0000 0.0000 1 1 510 3.01 0.00 0 18 50 2 601.31238 1201.61748 0.23 38.16 2899 2899 MS2 15/20 Linfeng_20130204_CTCF_9.raw High LKYENEVALR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 438 3.01 0.00 1 3 50 3 412.23044 1234.67676 -1.86 30.71 2664 2664 MS2 17/36 Linfeng_20130201_rIgG_4.raw High VLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 368 3.01 0.00 0 5 19 2 516.30249 1031.59770 -0.63 41.17 3825 3825 MS2 14/16 Linfeng_20130201_rIgG_7.raw High VLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 349 3.01 0.00 0 3 7 2 516.30261 1031.59795 -0.39 41.06 3708 3708 MS2 14/16 Linfeng_20130201_rIgG_4.raw High QSVEADINGLR Unambiguous 5 1 P13645 CID 1.0000 0.0000 1 1 498 3.01 0.00 0 24 50 2 601.31244 1201.61760 0.33 38.12 2864 2864 MS2 16/20 Linfeng_20130204_CTCF_8.raw High LKYENEVALR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 459 3.00 0.00 1 10 50 2 617.84265 1234.67803 -0.84 31.66 2366 2366 MS2 14/18 Linfeng_20130204_CTCF_1.raw High ALEESNYELEGK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 302 3.00 0.00 0 0 50 2 691.32855 1381.64983 1.16 32.53 2904 2904 MS2 17/22 Linfeng_20130201_rIgG_6.raw High QSLEASLAETEGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 432 3.00 0.00 0 20 50 2 695.84442 1390.68157 0.46 38.47 2900 2900 MS2 19/24 Linfeng_20130204_CTCF_8.raw High VTmQNLNDRLASYLDKVR Unambiguous 3 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 473 2.99 0.00 2 24 29 3 718.04553 2152.12204 1.88 48.01 4559 4559 MS2 24/68 Linfeng_20130201_rIgG_7.raw Medium VTmQNLNDRLASYLDKVR Unambiguous 3 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 476 2.99 0.00 2 10 3 4 538.78491 2152.11782 -0.09 47.42 4427 4427 MS2 30/102 Linfeng_20130201_rIgG_5.raw High SQYEQLAEQNRK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 469 2.99 0.00 1 10 50 2 747.37244 1493.73760 2.18 23.45 1834 1834 MS2 15/22 Linfeng_20130201_rIgG_8.raw High ALEESNYELEGK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 263 2.99 0.00 0 8 50 2 691.32666 1381.64604 -1.58 32.49 2640 2640 MS2 18/22 Linfeng_20130201_rIgG_5.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 549 2.99 0.00 1 10 50 3 478.92804 1434.76957 -0.30 36.43 3238 3238 MS2 18/40 Linfeng_20130201_rIgG_2.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 539 2.99 0.00 1 12 3 3 478.92810 1434.76975 -0.18 35.79 2997 2997 MS2 19/40 Linfeng_20130201_rIgG_5.raw High ALEESNYELEGK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 296 2.99 0.00 0 0 50 2 691.32837 1381.64946 0.90 31.64 2867 2867 MS2 15/22 Linfeng_20130201_rIgG_7.raw High RVLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 319 2.98 0.00 1 29 50 2 594.35315 1187.69902 -0.38 38.17 3421 3421 MS2 15/18 Linfeng_20130201_rIgG_10.raw High NVQALEIELQSQLALK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 228 2.98 0.00 0 14 50 2 899.01056 1797.01384 1.18 57.81 4795 4795 MS2 18/30 Linfeng_20130204_CTCF_4.raw High RVLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 318 2.98 0.00 1 36 50 2 594.35345 1187.69963 0.14 38.60 2722 2722 MS2 11/18 Linfeng_20130204_CTCF_3.raw High VLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 371 2.98 0.00 0 20 50 2 516.30273 1031.59819 -0.15 40.58 3122 3122 MS2 14/16 Linfeng_20130204_CTCF_7.raw High VLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 357 2.98 0.00 0 28 50 2 516.30249 1031.59770 -0.63 39.74 3604 3604 MS2 14/16 Linfeng_20130201_rIgG_1.raw High LKYENEVALR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 429 2.97 0.00 1 16 50 2 617.84198 1234.67668 -1.93 31.95 2784 2784 MS2 15/18 Linfeng_20130201_rIgG_4.raw High VLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 380 2.97 0.00 0 0 50 2 516.30255 1031.59783 -0.51 40.28 3682 3682 MS2 14/16 Linfeng_20130201_rIgG_6.raw High QSVEADINGLR Unambiguous 5 1 P13645 CID 1.0000 0.0000 1 1 477 2.97 0.00 0 16 44 2 601.31268 1201.61809 0.74 37.69 3355 3355 MS2 17/20 Linfeng_20130201_rIgG_4.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 244 2.97 0.00 1 11 50 2 532.80872 1064.61016 0.23 32.63 2965 2965 MS2 14/16 Linfeng_20130201_rIgG_7.raw High QSLEASLAETEGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 393 2.97 0.00 0 15 50 2 695.84436 1390.68144 0.37 38.55 2882 2882 MS2 18/24 Linfeng_20130204_CTCF_10.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 509 2.96 0.00 1 8 2 3 738.03687 2212.09604 -0.89 48.89 4652 4652 MS2 20/72 Linfeng_20130201_rIgG_1.raw High VLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 354 2.96 0.00 0 1 3 2 516.30255 1031.59783 -0.51 40.68 3706 3706 MS2 14/16 Linfeng_20130201_rIgG_1.raw High QSLEASLAETEGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 415 2.95 0.00 0 6 50 2 695.84406 1390.68083 -0.07 37.89 3375 3375 MS2 21/24 Linfeng_20130201_rIgG_4.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 359 2.95 0.00 0 10 50 2 998.98608 1996.96489 -3.07 52.37 4147 4147 MS2 17/32 Linfeng_20130204_CTCF_3.raw High SQYEQLAEQNRK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 430 2.94 0.00 1 0 50 2 747.37012 1493.73296 -0.93 23.45 1852 1852 MS2 15/22 Linfeng_20130201_rIgG_9.raw High QSLEASLAETEGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 525 2.94 0.00 0 7 50 2 695.84766 1390.68804 5.11 39.66 3026 3026 MS2 21/24 Linfeng_20130204_CTCF_7.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 456 2.94 0.00 0 3 50 3 666.32776 1996.96872 -1.15 52.10 5028 5028 MS2 29/64 Linfeng_20130201_rIgG_7.raw High SQYEQLAEQNRKDAEAWFNEK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 357 2.93 0.00 2 0 25 3 862.07391 2584.20719 0.32 45.80 4218 4218 MS2 30/80 Linfeng_20130201_rIgG_3.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 240 2.93 0.00 1 8 50 2 532.80853 1064.60979 -0.12 32.41 2844 2844 MS2 14/16 Linfeng_20130201_rIgG_3.raw High VLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 377 2.93 0.00 0 2 48 2 516.30261 1031.59795 -0.39 40.00 3598 3598 MS2 14/16 Linfeng_20130201_rIgG_4.raw High QSVEADINGLR Unambiguous 5 1 P13645 CID 1.0000 0.0000 1 1 416 2.93 0.00 0 24 50 2 601.31171 1201.61614 -0.89 37.34 2936 2936 MS2 15/20 Linfeng_20130204_CTCF_1.raw High SQYEQLAEQNRK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 453 2.92 0.00 1 5 50 2 747.37067 1493.73406 -0.19 23.14 1179 1179 MS2 14/22 Linfeng_20130204_CTCF_6.raw High SQYEQLAEQNRK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 462 2.92 0.00 1 0 50 2 747.37054 1493.73381 -0.35 22.83 1668 1668 MS2 13/22 Linfeng_20130201_rIgG_5.raw High SQYEQLAEQNR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 318 2.92 0.00 0 0 50 2 683.32391 1365.64055 0.86 26.68 2211 2211 MS2 17/20 Linfeng_20130201_rIgG_4.raw High NVQALEIELQSQLALK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 208 2.92 0.00 0 0 50 2 899.00909 1797.01091 -0.45 57.84 5653 5653 MS2 20/30 Linfeng_20130201_rIgG_2.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 312 2.92 0.00 1 26 50 2 532.80811 1064.60893 -0.92 32.62 2913 2913 MS2 14/16 Linfeng_20130201_rIgG_6.raw High SQYEQLAEQNRKDAEAWFNEK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 361 2.92 0.00 2 3 28 3 862.07440 2584.20865 0.88 45.96 4278 4278 MS2 28/80 Linfeng_20130201_rIgG_6.raw High SQYEQLAEQNR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 275 2.91 0.00 0 11 50 2 683.32336 1365.63945 0.06 26.56 2214 2214 MS2 16/20 Linfeng_20130201_rIgG_10.raw High VLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 392 2.91 0.00 0 12 50 2 516.30237 1031.59746 -0.86 40.13 3177 3177 MS2 14/16 Linfeng_20130204_CTCF_2.raw High SLLEGEGSSGGGGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 304 2.91 0.00 0 12 50 2 631.80347 1262.59966 1.94 25.95 2206 2206 MS2 16/26 Linfeng_20130201_rIgG_7.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 529 2.91 0.00 1 16 50 3 478.92749 1434.76792 -1.45 36.33 2712 2712 MS2 18/40 Linfeng_20130204_CTCF_9.raw High SQYEQLAEQNR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 319 2.91 0.00 0 0 50 2 683.32245 1365.63762 -1.28 26.62 2295 2295 MS2 16/20 Linfeng_20130201_rIgG_7.raw High NVQALEIELQSQLALK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 260 2.90 0.00 0 27 50 3 599.67407 1797.00766 -2.26 58.01 5700 5700 MS2 21/60 Linfeng_20130201_rIgG_4.raw High QSVEADINGLR Unambiguous 5 1 P13645 CID 1.0000 0.0000 1 1 492 2.90 0.00 0 5 50 2 601.31226 1201.61724 0.03 38.32 2690 2690 MS2 16/20 Linfeng_20130204_CTCF_4.raw High VLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 396 2.90 0.00 0 12 50 2 516.30371 1031.60015 1.74 40.58 3131 3131 MS2 14/16 Linfeng_20130204_CTCF_8.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 307 2.90 0.00 1 8 50 2 532.80908 1064.61089 0.92 32.38 2629 2629 MS2 15/16 Linfeng_20130201_rIgG_5.raw High ALEESNYELEGK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 284 2.89 0.00 0 6 50 2 691.32794 1381.64861 0.28 32.41 2849 2849 MS2 16/22 Linfeng_20130201_rIgG_10.raw High RVLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 317 2.89 0.00 1 29 50 2 594.35352 1187.69975 0.24 38.89 2946 2946 MS2 15/18 Linfeng_20130204_CTCF_7.raw High ALEESNYELEGK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 296 2.89 0.00 0 15 50 2 691.32721 1381.64714 -0.78 31.48 2752 2752 MS2 17/22 Linfeng_20130201_rIgG_3.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 511 2.89 0.00 1 19 11 3 738.03687 2212.09604 -0.89 49.47 4186 4186 MS2 21/72 Linfeng_20130204_CTCF_8.raw High QSVEADINGLR Unambiguous 5 1 P13645 CID 1.0000 0.0000 1 1 514 2.89 0.00 0 2 34 2 601.31232 1201.61736 0.13 38.35 2697 2697 MS2 15/20 Linfeng_20130204_CTCF_3.raw High RVLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 322 2.89 0.00 1 30 45 2 594.35382 1187.70036 0.75 37.57 3375 3375 MS2 14/18 Linfeng_20130201_rIgG_1.raw High ALEESNYELEGK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 290 2.88 0.00 0 29 50 2 691.32782 1381.64836 0.10 31.66 2818 2818 MS2 15/22 Linfeng_20130201_rIgG_6.raw High VLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 353 2.88 0.00 0 3 49 2 516.30267 1031.59807 -0.27 39.78 3579 3579 MS2 14/16 Linfeng_20130201_rIgG_2.raw High SLLEGEGSSGGGGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 330 2.87 0.00 0 12 50 2 631.80133 1262.59538 -1.45 26.92 2254 2254 MS2 18/26 Linfeng_20130201_rIgG_1.raw High RVLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 322 2.87 0.00 1 55 50 2 594.35382 1187.70036 0.75 39.13 2941 2941 MS2 14/18 Linfeng_20130204_CTCF_10.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 542 2.87 0.00 1 5 36 3 478.92850 1434.77094 0.65 36.33 2688 2688 MS2 20/40 Linfeng_20130204_CTCF_7.raw High SQYEQLAEQNR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 326 2.86 0.00 0 66 50 2 683.32483 1365.64238 2.20 26.71 2262 2262 MS2 15/20 Linfeng_20130201_rIgG_6.raw High ALEESNYELEGK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 263 2.86 0.00 0 10 50 2 691.32642 1381.64556 -1.93 32.48 2865 2865 MS2 17/22 Linfeng_20130201_rIgG_9.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 513 2.86 0.00 1 23 50 3 478.92789 1434.76911 -0.62 35.35 3130 3130 MS2 19/40 Linfeng_20130201_rIgG_2.raw High NVQALEIELQSQLALK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 233 2.86 0.00 0 10 50 2 899.00879 1797.01030 -0.79 57.75 5131 5131 MS2 21/30 Linfeng_20130204_CTCF_1.raw High QSVEADINGLR Unambiguous 5 1 P13645 CID 1.0000 0.0000 1 1 497 2.86 0.00 0 20 50 2 601.31201 1201.61675 -0.38 37.94 3441 3441 MS2 16/20 Linfeng_20130201_rIgG_6.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 306 2.86 0.00 1 9 50 2 532.80939 1064.61150 1.49 31.79 2017 2017 MS2 14/16 Linfeng_20130204_CTCF_6.raw High VLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 358 2.86 0.00 0 8 16 2 516.30249 1031.59770 -0.63 41.04 3718 3718 MS2 14/16 Linfeng_20130201_rIgG_3.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 307 2.85 0.00 1 38 50 2 532.80811 1064.60893 -0.92 33.12 2333 2333 MS2 14/16 Linfeng_20130204_CTCF_10.raw High QSVEADINGLR Unambiguous 5 1 P13645 CID 1.0000 0.0000 1 1 491 2.85 0.00 0 21 50 2 601.31201 1201.61675 -0.38 37.85 2940 2940 MS2 16/20 Linfeng_20130204_CTCF_2.raw High VLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 403 2.85 0.00 0 0 50 2 516.30280 1031.59831 -0.04 41.74 3885 3885 MS2 14/16 Linfeng_20130201_rIgG_7.raw High ALEESNYELEGK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 282 2.85 0.00 0 13 50 2 691.32788 1381.64849 0.19 32.91 2311 2311 MS2 17/22 Linfeng_20130204_CTCF_10.raw High VLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 398 2.85 0.00 0 6 50 2 516.30219 1031.59709 -1.22 40.66 3156 3156 MS2 14/16 Linfeng_20130204_CTCF_9.raw High SQYEQLAEQNRK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 442 2.85 0.00 1 15 50 2 747.37067 1493.73406 -0.19 22.84 1777 1777 MS2 14/22 Linfeng_20130201_rIgG_3.raw High ALEESNYELEGK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 309 2.84 0.00 0 0 50 2 691.33032 1381.65337 3.72 32.79 2144 2144 MS2 16/22 Linfeng_20130204_CTCF_4.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 550 2.84 0.00 1 12 50 3 478.92813 1434.76984 -0.11 37.02 3321 3321 MS2 20/40 Linfeng_20130201_rIgG_1.raw High QSVEADINGLR Unambiguous 5 1 P13645 CID 1.0000 0.0000 1 1 504 2.83 0.00 0 26 50 2 601.31213 1201.61699 -0.18 37.16 3334 3334 MS2 17/20 Linfeng_20130201_rIgG_1.raw High QSVEADINGLR Unambiguous 5 1 P13645 CID 1.0000 0.0000 1 1 433 2.83 0.00 0 11 3 2 601.31134 1201.61540 -1.50 37.78 3218 3218 MS2 17/20 Linfeng_20130201_rIgG_5.raw High SQYEQLAEQNR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 306 2.83 0.00 0 0 50 2 683.32233 1365.63738 -1.46 26.92 2243 2243 MS2 15/20 Linfeng_20130201_rIgG_2.raw High RVLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 312 2.83 0.00 1 29 50 2 594.35345 1187.69963 0.14 37.77 3372 3372 MS2 15/18 Linfeng_20130201_rIgG_2.raw High VLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 389 2.83 0.00 0 48 50 2 516.30273 1031.59819 -0.15 41.27 2996 2996 MS2 14/16 Linfeng_20130204_CTCF_3.raw High VLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 395 2.83 0.00 0 8 50 2 516.30286 1031.59844 0.08 41.78 3836 3836 MS2 14/16 Linfeng_20130201_rIgG_6.raw High RVLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 322 2.82 0.00 1 23 50 2 594.35388 1187.70049 0.86 38.48 3496 3496 MS2 14/18 Linfeng_20130201_rIgG_6.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 303 2.82 0.00 1 21 50 2 532.80823 1064.60918 -0.69 32.70 2972 2972 MS2 13/16 Linfeng_20130201_rIgG_7.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 207 2.81 0.00 0 5 50 2 854.38818 1707.76909 -1.84 52.05 4916 4916 MS2 17/36 Linfeng_20130201_rIgG_2.raw High HGNSHQGEPR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 167 2.81 0.00 0 5 50 2 559.75842 1118.50957 0.84 15.18 736 736 MS2 13/18 Linfeng_20130201_rIgG_4.raw High QSVEADINGLR Unambiguous 5 1 P13645 CID 1.0000 0.0000 1 1 416 2.80 0.00 0 19 50 2 601.31152 1201.61577 -1.19 37.24 3318 3318 MS2 17/20 Linfeng_20130201_rIgG_2.raw High SLLEGEGSSGGGGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 343 2.80 0.00 0 20 50 2 631.80237 1262.59746 0.20 25.82 2144 2144 MS2 16/26 Linfeng_20130201_rIgG_9.raw High SLLEGEGSSGGGGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 317 2.80 0.00 0 0 50 2 631.80115 1262.59502 -1.74 27.09 2307 2307 MS2 16/26 Linfeng_20130201_rIgG_6.raw High QSLEASLAETEGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 428 2.80 0.00 0 0 50 2 695.84479 1390.68230 0.98 37.67 2968 2968 MS2 20/24 Linfeng_20130204_CTCF_1.raw High QSVEADINGLR Unambiguous 5 1 P13645 CID 1.0000 0.0000 1 1 489 2.80 0.00 0 14 50 2 601.31299 1201.61870 1.25 38.57 2719 2719 MS2 13/20 Linfeng_20130204_CTCF_3.raw High SQYEQLAEQNRK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 452 2.79 0.00 1 0 50 2 747.37134 1493.73540 0.71 23.38 1726 1726 MS2 14/22 Linfeng_20130201_rIgG_5.raw High LAADDFRLKYENEVALR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 518 2.78 0.00 2 27 50 3 675.02588 2023.06308 1.12 44.05 4126 4126 MS2 24/64 Linfeng_20130201_rIgG_7.raw High DAEAWFNEK Unambiguous 2 1 P13645 CID 1.0000 0.0000 1 1 165 2.78 0.00 0 12 50 2 555.24878 1109.49028 0.37 41.63 3209 3209 MS2 13/16 Linfeng_20130204_CTCF_10.raw High LKYENEVALR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 422 2.78 0.00 1 5 50 3 412.23062 1234.67731 -1.42 30.90 2482 2482 MS2 19/36 Linfeng_20130201_rIgG_5.raw High ALEESNYELEGK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 315 2.78 0.00 0 0 50 2 691.32892 1381.65056 1.69 31.14 2733 2733 MS2 17/22 Linfeng_20130201_rIgG_1.raw High SLLEGEGSSGGGGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 321 2.78 0.00 0 8 50 2 631.80219 1262.59709 -0.09 26.30 1486 1486 MS2 16/26 Linfeng_20130204_CTCF_6.raw High ALEESNYELEGK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 272 2.78 0.00 0 7 50 2 691.32751 1381.64775 -0.34 31.85 2023 2023 MS2 16/22 Linfeng_20130204_CTCF_6.raw High VLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 357 2.78 0.00 0 8 50 2 516.30267 1031.59807 -0.27 40.00 3611 3611 MS2 14/16 Linfeng_20130201_rIgG_3.raw High ALEESNYELEGK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 301 2.78 0.00 0 0 50 2 691.32819 1381.64910 0.63 32.56 2958 2958 MS2 17/22 Linfeng_20130201_rIgG_7.raw High SQYEQLAEQNR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 289 2.78 0.00 0 0 50 2 683.32336 1365.63945 0.06 27.37 2340 2340 MS2 17/20 Linfeng_20130201_rIgG_6.raw High SQYEQLAEQNR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 297 2.78 0.00 0 0 50 2 683.32312 1365.63896 -0.30 26.45 2184 2184 MS2 16/20 Linfeng_20130201_rIgG_4.raw High RVLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 288 2.77 0.00 1 27 50 2 594.35291 1187.69853 -0.79 38.39 3419 3419 MS2 13/18 Linfeng_20130201_rIgG_8.raw High VLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 387 2.77 0.00 0 0 50 2 516.30280 1031.59831 -0.04 39.90 3198 3198 MS2 15/16 Linfeng_20130204_CTCF_1.raw High VLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 386 2.76 0.00 0 42 41 2 516.30249 1031.59770 -0.63 40.96 3309 3309 MS2 14/16 Linfeng_20130204_CTCF_1.raw High VLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 394 2.76 0.00 0 32 50 2 516.30243 1031.59758 -0.75 41.21 3287 3287 MS2 14/16 Linfeng_20130204_CTCF_2.raw High SQYEQLAEQNRKDAEAWFNEK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 358 2.76 0.00 2 4 26 3 862.07385 2584.20700 0.24 45.81 4231 4231 MS2 26/80 Linfeng_20130201_rIgG_9.raw High VLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 358 2.75 0.00 0 10 50 2 516.30225 1031.59722 -1.10 40.10 3622 3622 MS2 14/16 Linfeng_20130201_rIgG_10.raw High QSLEASLAETEGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 395 2.75 0.00 0 12 50 2 695.84473 1390.68218 0.90 38.07 3506 3506 MS2 21/24 Linfeng_20130201_rIgG_7.raw High RVLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 320 2.75 0.00 1 24 50 2 594.35364 1187.70000 0.44 38.07 3410 3410 MS2 13/18 Linfeng_20130201_rIgG_3.raw High SLLEGEGSSGGGGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 362 2.75 0.00 0 0 50 2 631.80292 1262.59856 1.07 26.95 2247 2247 MS2 16/26 Linfeng_20130201_rIgG_2.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 547 2.74 0.00 1 15 50 3 478.92862 1434.77130 0.91 36.22 2665 2665 MS2 17/40 Linfeng_20130204_CTCF_8.raw High VLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 396 2.74 0.00 0 9 50 2 516.30237 1031.59746 -0.86 41.51 3023 3023 MS2 13/16 Linfeng_20130204_CTCF_6.raw High VLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 390 2.74 0.00 0 9 17 2 516.30249 1031.59770 -0.63 40.00 3494 3494 MS2 14/16 Linfeng_20130201_rIgG_5.raw High SQYEQLAEQNR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 338 2.74 0.00 0 9 50 2 683.32416 1365.64104 1.22 27.14 2266 2266 MS2 16/20 Linfeng_20130201_rIgG_4.raw High RVLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 311 2.74 0.00 1 42 50 2 594.35345 1187.69963 0.14 38.34 3448 3448 MS2 14/18 Linfeng_20130201_rIgG_9.raw High VLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 385 2.73 0.00 0 21 50 2 516.30286 1031.59844 0.08 40.33 2900 2900 MS2 14/16 Linfeng_20130204_CTCF_3.raw High QSLEASLAETEGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 416 2.73 0.00 0 6 13 2 695.84412 1390.68096 0.02 38.08 3253 3253 MS2 22/24 Linfeng_20130201_rIgG_5.raw High SQYEQLAEQNRK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 441 2.72 0.00 1 0 50 2 747.37140 1493.73552 0.79 23.50 1829 1829 MS2 15/22 Linfeng_20130201_rIgG_2.raw High QSLEASLAETEGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 402 2.72 0.00 0 7 50 2 695.84467 1390.68205 0.81 39.21 3515 3515 MS2 20/24 Linfeng_20130201_rIgG_4.raw High ALEESNYELEGK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 282 2.71 0.00 0 0 50 2 691.32794 1381.64861 0.28 32.45 2849 2849 MS2 17/22 Linfeng_20130201_rIgG_3.raw High SQYEQLAEQNR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 254 2.70 0.00 0 0 50 2 683.32104 1365.63481 -3.34 26.65 2207 2207 MS2 15/20 Linfeng_20130201_rIgG_8.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 236 2.70 0.00 1 29 50 2 532.80835 1064.60942 -0.46 32.37 2440 2440 MS2 12/16 Linfeng_20130204_CTCF_1.raw High SQYEQLAEQNR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 274 2.70 0.00 0 0 50 2 683.32330 1365.63933 -0.03 27.31 2383 2383 MS2 16/20 Linfeng_20130201_rIgG_7.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 532 2.69 0.00 1 9 31 3 478.92783 1434.76892 -0.75 36.06 3252 3252 MS2 18/40 Linfeng_20130201_rIgG_6.raw High LKYENEVALR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 437 2.69 0.00 1 5 50 3 412.23029 1234.67630 -2.23 30.94 2800 2800 MS2 17/36 Linfeng_20130201_rIgG_7.raw Medium VTmQNLNDRLASYLDKVR Unambiguous 3 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 493 2.68 0.00 2 18 10 4 538.78448 2152.11611 -0.88 48.07 4566 4566 MS2 23/102 Linfeng_20130201_rIgG_7.raw High RVLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 289 2.68 0.00 1 26 50 2 594.35266 1187.69805 -1.20 38.33 2989 2989 MS2 14/18 Linfeng_20130204_CTCF_2.raw High SQYEQLAEQNRK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 447 2.67 0.00 1 0 50 2 747.37103 1493.73479 0.30 22.72 1719 1719 MS2 12/22 Linfeng_20130201_rIgG_4.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 508 2.67 0.00 1 23 50 3 478.92731 1434.76737 -1.84 35.96 3209 3209 MS2 20/40 Linfeng_20130201_rIgG_9.raw High VLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 389 2.67 0.00 0 11 45 2 516.30298 1031.59868 0.32 40.95 3136 3136 MS2 14/16 Linfeng_20130204_CTCF_10.raw High VLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 331 2.67 0.00 0 7 50 2 516.30304 1031.59880 0.44 40.47 2912 2912 MS2 13/16 Linfeng_20130204_CTCF_4.raw High NVQALEIELQSQLALK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 209 2.67 0.00 0 11 8 2 899.00842 1797.00957 -1.20 52.56 4991 4991 MS2 15/30 Linfeng_20130201_rIgG_3.raw High ALEESNYELEGK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 273 2.66 0.00 0 13 50 2 691.32593 1381.64458 -2.64 31.94 2214 2214 MS2 15/22 Linfeng_20130204_CTCF_10.raw High ALEESNYELEGK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 277 2.66 0.00 0 7 50 2 691.32776 1381.64824 0.01 32.18 2837 2837 MS2 18/22 Linfeng_20130201_rIgG_1.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 555 2.66 0.00 1 9 50 3 478.92804 1434.76957 -0.30 37.07 3404 3404 MS2 18/40 Linfeng_20130201_rIgG_7.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 176 2.65 0.00 0 0 50 2 854.38776 1707.76824 -2.34 58.41 5709 5709 MS2 16/36 Linfeng_20130201_rIgG_2.raw High ALEESNYELEGK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 272 2.65 0.00 0 9 50 2 691.32672 1381.64617 -1.49 31.40 2731 2731 MS2 16/22 Linfeng_20130201_rIgG_4.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 515 2.65 0.00 1 27 50 3 478.92743 1434.76773 -1.58 35.71 3172 3172 MS2 20/40 Linfeng_20130201_rIgG_3.raw High ALEESNYELEGK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 274 2.65 0.00 0 12 50 2 691.32672 1381.64617 -1.49 32.42 2830 2830 MS2 17/22 Linfeng_20130201_rIgG_4.raw High VLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 335 2.65 0.00 0 19 50 2 516.30322 1031.59917 0.79 41.98 3292 3292 MS2 13/16 Linfeng_20130204_CTCF_9.raw High QSLEASLAETEGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 424 2.64 0.00 0 23 38 2 695.84540 1390.68352 1.86 38.46 2693 2693 MS2 19/24 Linfeng_20130204_CTCF_6.raw High SQYEQLAEQNR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 288 2.64 0.00 0 0 50 2 683.32300 1365.63872 -0.48 27.21 2298 2298 MS2 17/20 Linfeng_20130201_rIgG_9.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 318 2.64 0.00 1 8 50 2 532.80823 1064.60918 -0.69 32.58 2875 2875 MS2 14/16 Linfeng_20130201_rIgG_9.raw High QSVEADINGLR Unambiguous 5 1 P13645 CID 1.0000 0.0000 1 1 410 2.64 0.00 0 9 50 2 601.31165 1201.61601 -0.99 37.80 3392 3392 MS2 16/20 Linfeng_20130201_rIgG_9.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 528 2.64 0.00 1 44 50 3 478.92786 1434.76902 -0.69 35.80 2736 2736 MS2 18/40 Linfeng_20130204_CTCF_2.raw High QSVEADINGLR Unambiguous 5 1 P13645 CID 1.0000 0.0000 1 1 453 2.63 0.00 0 32 50 2 601.31030 1201.61333 -3.22 37.86 3361 3361 MS2 17/20 Linfeng_20130201_rIgG_8.raw High QSVEADINGLRR Unambiguous 5 1 P13645 CID 1.0000 0.0000 1 1 472 2.63 0.00 1 0 50 2 679.36292 1357.71855 0.17 33.70 2572 2572 MS2 15/22 Linfeng_20130204_CTCF_1.raw High RVLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 313 2.63 0.00 1 30 50 2 594.35388 1187.70049 0.86 38.29 3528 3528 MS2 15/18 Linfeng_20130201_rIgG_7.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 530 2.62 0.00 1 7 50 3 478.92746 1434.76783 -1.52 36.56 2857 2857 MS2 20/40 Linfeng_20130204_CTCF_1.raw High SLLEGEGSSGGGGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 341 2.62 0.00 0 0 50 2 631.80212 1262.59697 -0.19 27.11 2259 2259 MS2 17/26 Linfeng_20130201_rIgG_8.raw High QSLEASLAETEGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 418 2.62 0.00 0 11 50 2 695.84399 1390.68071 -0.16 37.96 3400 3400 MS2 22/24 Linfeng_20130201_rIgG_10.raw High VLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 392 2.61 0.00 0 32 50 2 516.30280 1031.59831 -0.04 41.89 3057 3057 MS2 13/16 Linfeng_20130204_CTCF_4.raw High SLLEGEGSSGGGGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 333 2.61 0.00 0 10 50 2 631.80188 1262.59648 -0.58 25.82 1980 1980 MS2 21/26 Linfeng_20130201_rIgG_5.raw High QSVEADINGLR Unambiguous 5 1 P13645 CID 1.0000 0.0000 1 1 478 2.60 0.00 0 21 50 2 601.31213 1201.61699 -0.18 37.61 3365 3365 MS2 17/20 Linfeng_20130201_rIgG_10.raw High QSLEASLAETEGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 415 2.60 0.00 0 24 50 2 695.84473 1390.68218 0.90 38.25 2687 2687 MS2 15/24 Linfeng_20130204_CTCF_3.raw High VLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 392 2.60 0.00 0 9 50 2 516.30206 1031.59685 -1.46 41.74 3799 3799 MS2 14/16 Linfeng_20130201_rIgG_9.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 532 2.60 0.00 1 14 50 3 478.92758 1434.76819 -1.26 36.89 3292 3292 MS2 17/40 Linfeng_20130201_rIgG_10.raw High SQYEQLAEQNRK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 462 2.60 0.00 1 0 50 2 747.37134 1493.73540 0.71 22.58 1730 1730 MS2 14/22 Linfeng_20130201_rIgG_1.raw High NHEEEmKDLR Unambiguous 1 1 P13645 M6(Oxidation) CID 1.0000 0.0000 1 1 167 2.60 0.00 1 27 50 3 439.53461 1316.58927 -0.56 15.75 809 809 MS2 17/36 Linfeng_20130201_rIgG_5.raw High QSVEADINGLR Unambiguous 5 1 P13645 CID 1.0000 0.0000 1 1 516 2.59 0.00 0 28 50 2 601.31262 1201.61797 0.64 37.63 3364 3364 MS2 16/20 Linfeng_20130201_rIgG_3.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 547 2.59 0.00 1 30 50 3 478.92865 1434.77140 0.97 36.20 2477 2477 MS2 15/40 Linfeng_20130204_CTCF_4.raw High DAEAWFNEK Unambiguous 2 1 P13645 CID 1.0000 0.0000 1 1 152 2.59 0.00 0 7 10 2 555.24792 1109.48857 -1.17 41.40 3770 3770 MS2 13/16 Linfeng_20130201_rIgG_8.raw High SLLEGEGSSGGGGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 359 2.58 0.00 0 11 50 2 631.80286 1262.59844 0.97 26.98 2096 2096 MS2 16/26 Linfeng_20130201_rIgG_5.raw High ALEESNYELEGK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 294 2.58 0.00 0 16 50 2 691.32800 1381.64873 0.37 31.60 2551 2551 MS2 18/22 Linfeng_20130201_rIgG_5.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 529 2.57 0.00 1 3 50 3 478.92758 1434.76819 -1.26 35.46 2747 2747 MS2 18/40 Linfeng_20130204_CTCF_1.raw High SQYEQLAEQNRKDAEAWFNEK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 354 2.57 0.00 2 4 41 3 862.07361 2584.20627 -0.04 46.01 4335 4335 MS2 24/80 Linfeng_20130201_rIgG_7.raw High VLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 398 2.56 0.00 0 12 50 2 516.30206 1031.59685 -1.46 41.31 3755 3755 MS2 14/16 Linfeng_20130201_rIgG_9.raw High DAEAWFNEK Unambiguous 2 1 P13645 CID 1.0000 0.0000 1 1 158 2.56 0.00 0 5 12 2 555.24884 1109.49040 0.48 41.45 3802 3802 MS2 13/16 Linfeng_20130201_rIgG_6.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 222 2.56 0.00 0 19 28 3 569.92883 1707.77195 -0.17 44.60 4085 4085 MS2 22/72 Linfeng_20130201_rIgG_4.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 313 2.55 0.00 1 20 50 2 532.80823 1064.60918 -0.69 32.90 2352 2352 MS2 13/16 Linfeng_20130204_CTCF_7.raw High QSLEASLAETEGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 422 2.55 0.00 0 9 50 2 695.84406 1390.68083 -0.07 38.53 3451 3451 MS2 19/24 Linfeng_20130201_rIgG_2.raw High ALEESNYELEGK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 278 2.55 0.00 0 7 50 2 691.32813 1381.64897 0.54 32.71 2139 2139 MS2 15/22 Linfeng_20130204_CTCF_3.raw High SLLEGEGSSGGGGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 336 2.55 0.00 0 12 50 2 631.80200 1262.59673 -0.38 25.71 2120 2120 MS2 17/26 Linfeng_20130201_rIgG_3.raw High VTmQNLNDR Unambiguous 4 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 379 2.54 0.00 0 21 50 2 553.76636 1106.52544 -0.45 17.17 998 998 MS2 13/16 Linfeng_20130201_rIgG_3.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 230 2.54 0.00 0 24 38 3 569.92859 1707.77121 -0.60 44.39 4055 4055 MS2 20/72 Linfeng_20130201_rIgG_2.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 209 2.54 0.00 0 0 50 2 854.38965 1707.77202 -0.12 59.79 5034 5034 MS2 17/36 Linfeng_20130204_CTCF_6.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 237 2.53 0.00 1 17 50 2 532.80847 1064.60967 -0.23 32.53 2861 2861 MS2 14/16 Linfeng_20130201_rIgG_10.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 529 2.53 0.00 1 7 41 3 478.92764 1434.76838 -1.13 36.77 3279 3279 MS2 20/40 Linfeng_20130201_rIgG_3.raw High RVLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 258 2.53 0.00 1 31 50 2 594.35468 1187.70207 2.19 39.01 2760 2760 MS2 13/18 Linfeng_20130204_CTCF_4.raw High QSVEADINGLR Unambiguous 5 1 P13645 CID 1.0000 0.0000 1 1 405 2.53 0.00 0 29 50 2 601.31177 1201.61626 -0.78 37.81 3479 3479 MS2 16/20 Linfeng_20130201_rIgG_7.raw High LAADDFRLKYENEVALR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 499 2.53 0.00 2 55 50 3 675.02527 2023.06125 0.22 44.21 4055 4055 MS2 27/64 Linfeng_20130201_rIgG_9.raw High SLLEGEGSSGGGGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 325 2.52 0.00 0 0 50 2 631.80188 1262.59648 -0.58 25.71 1691 1691 MS2 16/26 Linfeng_20130204_CTCF_1.raw High VLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 373 2.52 0.00 0 7 29 2 516.30194 1031.59661 -1.69 41.11 3728 3728 MS2 14/16 Linfeng_20130201_rIgG_10.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 308 2.51 0.00 1 14 50 2 532.80768 1064.60808 -1.72 30.94 2696 2696 MS2 14/16 Linfeng_20130201_rIgG_2.raw High DAEAWFNEK Unambiguous 2 1 P13645 CID 1.0000 0.0000 1 1 164 2.51 0.00 0 5 16 2 555.24872 1109.49016 0.26 41.60 3228 3228 MS2 13/16 Linfeng_20130204_CTCF_7.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 235 2.50 0.00 0 10 48 3 569.92828 1707.77030 -1.13 44.63 3643 3643 MS2 19/72 Linfeng_20130204_CTCF_2.raw High IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 522 2.50 0.00 1 4 14 3 478.92786 1434.76902 -0.69 36.20 2461 2461 MS2 16/40 Linfeng_20130204_CTCF_6.raw High VTmQNLNDR Unambiguous 4 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 380 2.50 0.00 0 31 50 2 553.76611 1106.52495 -0.89 17.24 1017 1017 MS2 15/16 Linfeng_20130201_rIgG_7.raw Medium IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 531 2.50 0.00 1 16 50 3 478.92752 1434.76801 -1.39 36.90 2845 2845 MS2 17/40 Linfeng_20130204_CTCF_2.raw High SQYEQLAEQNR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 309 2.50 0.00 0 0 50 2 683.32257 1365.63786 -1.10 27.11 1853 1853 MS2 15/20 Linfeng_20130204_CTCF_1.raw High QSLEASLAETEGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 420 2.50 0.00 0 10 36 2 695.84393 1390.68059 -0.25 38.21 3399 3399 MS2 18/24 Linfeng_20130201_rIgG_8.raw Medium LAADDFRLKYENEVALR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 500 2.49 0.00 2 75 50 3 675.02551 2023.06198 0.58 44.06 4033 4033 MS2 24/64 Linfeng_20130201_rIgG_3.raw High DAEAWFNEK Unambiguous 2 1 P13645 CID 1.0000 0.0000 1 1 160 2.49 0.00 0 8 38 2 555.24786 1109.48845 -1.28 41.49 3243 3243 MS2 13/16 Linfeng_20130204_CTCF_9.raw High SLLEGEGSSGGGGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 300 2.48 0.00 0 12 50 2 631.80115 1262.59502 -1.74 25.50 2076 2076 MS2 17/26 Linfeng_20130201_rIgG_2.raw High SQYEQLAEQNRK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 482 2.48 0.00 1 0 50 2 747.37134 1493.73540 0.71 22.75 1311 1311 MS2 11/22 Linfeng_20130204_CTCF_1.raw High SLLEGEGSSGGGGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 323 2.48 0.00 0 0 50 2 631.80310 1262.59892 1.36 27.24 2374 2374 MS2 16/26 Linfeng_20130201_rIgG_7.raw Medium IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 535 2.48 0.00 1 38 50 3 478.92773 1434.76865 -0.94 36.10 2472 2472 MS2 16/40 Linfeng_20130204_CTCF_3.raw High DAEAWFNEK Unambiguous 2 1 P13645 CID 1.0000 0.0000 1 1 157 2.48 0.00 0 5 12 2 555.24902 1109.49077 0.81 41.37 3847 3847 MS2 13/16 Linfeng_20130201_rIgG_7.raw High VLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 337 2.48 0.00 0 3 50 2 516.30304 1031.59880 0.44 41.66 3234 3234 MS2 13/16 Linfeng_20130204_CTCF_7.raw High HGNSHQGEPR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 173 2.47 0.00 0 0 50 2 559.75769 1118.50810 -0.47 15.16 757 757 MS2 15/18 Linfeng_20130201_rIgG_2.raw Medium NHEEEmKDLR Unambiguous 1 1 P13645 M6(Oxidation) CID 1.0000 0.0000 1 1 161 2.47 0.00 1 20 50 3 439.53479 1316.58982 -0.14 15.77 822 822 MS2 17/36 Linfeng_20130201_rIgG_6.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 208 2.47 0.00 0 0 50 2 854.38885 1707.77043 -1.05 58.34 5765 5765 MS2 16/36 Linfeng_20130201_rIgG_6.raw High SQYEQLAEQNR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 304 2.47 0.00 0 0 50 2 683.32257 1365.63786 -1.10 27.35 2287 2287 MS2 15/20 Linfeng_20130201_rIgG_8.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 302 2.47 0.00 1 9 50 2 532.80902 1064.61077 0.80 31.38 2529 2529 MS2 12/16 Linfeng_20130201_rIgG_5.raw High VTmQNLNDR Unambiguous 4 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 397 2.46 0.00 0 47 50 2 553.76642 1106.52556 -0.34 17.35 558 558 MS2 14/16 Linfeng_20130204_CTCF_8.raw High QSLEASLAETEGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 418 2.45 0.00 0 4 38 2 695.84412 1390.68096 0.02 37.86 3388 3388 MS2 20/24 Linfeng_20130201_rIgG_3.raw Medium GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 230 2.45 0.00 0 20 36 3 569.92938 1707.77359 0.80 44.73 3367 3367 MS2 21/72 Linfeng_20130204_CTCF_6.raw High DAEAWFNEK Unambiguous 2 1 P13645 CID 1.0000 0.0000 1 1 149 2.45 0.00 0 2 6 2 555.24829 1109.48931 -0.51 41.15 3729 3729 MS2 13/16 Linfeng_20130201_rIgG_3.raw High VLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 385 2.45 0.00 0 34 50 2 516.30200 1031.59673 -1.57 41.40 3796 3796 MS2 14/16 Linfeng_20130201_rIgG_6.raw High SLLEGEGSSGGGGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 319 2.45 0.00 0 21 50 2 631.80145 1262.59563 -1.25 27.80 2178 2178 MS2 14/26 Linfeng_20130201_rIgG_5.raw Medium LKYENEVALR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 462 2.45 0.00 1 2 50 3 412.23007 1234.67566 -2.75 30.66 2266 2266 MS2 14/36 Linfeng_20130204_CTCF_1.raw High SQYEQLAEQNRK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 450 2.44 0.00 1 57 50 2 747.37073 1493.73418 -0.11 22.76 1769 1769 MS2 13/22 Linfeng_20130201_rIgG_9.raw High SLLEGEGSSGGGGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 321 2.44 0.00 0 0 50 2 631.80115 1262.59502 -1.74 25.98 2131 2131 MS2 17/26 Linfeng_20130201_rIgG_8.raw High SQYEQLAEQNRK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 424 2.42 0.00 1 14 50 2 747.37207 1493.73686 1.69 22.81 1765 1765 MS2 11/22 Linfeng_20130201_rIgG_10.raw High DAEAWFNEK Unambiguous 2 1 P13645 CID 1.0000 0.0000 1 1 163 2.42 0.00 0 34 50 2 555.24854 1109.48979 -0.07 43.20 3201 3201 MS2 13/16 Linfeng_20130204_CTCF_6.raw High SLLEGEGSSGGGGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 316 2.42 0.00 0 6 50 2 631.80139 1262.59551 -1.35 25.52 2096 2096 MS2 18/26 Linfeng_20130201_rIgG_1.raw High SLLEGEGSSGGGGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 304 2.42 0.00 0 10 50 2 631.80109 1262.59490 -1.83 27.11 2262 2262 MS2 14/26 Linfeng_20130201_rIgG_4.raw High DAEAWFNEK Unambiguous 2 1 P13645 CID 1.0000 0.0000 1 1 159 2.40 0.00 0 12 3 2 555.24915 1109.49101 1.03 41.37 3668 3668 MS2 13/16 Linfeng_20130201_rIgG_5.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 248 2.40 0.00 0 4 50 2 854.39508 1707.78288 6.24 52.13 4123 4123 MS2 15/36 Linfeng_20130204_CTCF_3.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 237 2.39 0.00 1 12 50 2 532.80878 1064.61028 0.34 32.09 2810 2810 MS2 13/16 Linfeng_20130201_rIgG_2.raw High LKYENEVALR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 365 2.39 0.00 1 16 50 2 617.84241 1234.67754 -1.23 32.05 2808 2808 MS2 14/18 Linfeng_20130201_rIgG_3.raw High LKYENEVALR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 422 2.39 0.00 1 20 50 2 617.84381 1234.68035 1.04 32.17 2256 2256 MS2 14/18 Linfeng_20130204_CTCF_8.raw High QSVEADINGLRR Unambiguous 5 1 P13645 CID 1.0000 0.0000 1 1 527 2.39 0.00 1 7 50 2 679.36169 1357.71611 -1.63 33.92 3007 3007 MS2 15/22 Linfeng_20130201_rIgG_9.raw Medium LAADDFRLKYENEVALR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 510 2.39 0.00 2 45 50 3 675.02539 2023.06162 0.40 44.16 4083 4083 MS2 23/64 Linfeng_20130201_rIgG_6.raw High QSLEASLAETEGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 384 2.39 0.00 0 0 50 2 695.84247 1390.67766 -2.35 38.03 3416 3416 MS2 19/24 Linfeng_20130201_rIgG_9.raw High DAEAWFNEK Unambiguous 2 1 P13645 CID 1.0000 0.0000 1 1 157 2.39 0.00 0 6 43 2 555.24799 1109.48870 -1.06 41.55 3022 3022 MS2 13/16 Linfeng_20130204_CTCF_4.raw High SQYEQLAEQNR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 342 2.38 0.00 0 12 50 2 683.32422 1365.64116 1.31 27.65 1819 1819 MS2 14/20 Linfeng_20130204_CTCF_7.raw High VTmQNLNDR Unambiguous 4 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 386 2.38 0.00 0 23 50 2 553.76636 1106.52544 -0.45 17.72 1045 1045 MS2 13/16 Linfeng_20130201_rIgG_5.raw High DAEAWFNEK Unambiguous 2 1 P13645 CID 1.0000 0.0000 1 1 156 2.38 0.00 0 5 2 2 555.24896 1109.49065 0.70 41.35 3740 3740 MS2 13/16 Linfeng_20130201_rIgG_4.raw High DAEAWFNEK Unambiguous 2 1 P13645 CID 1.0000 0.0000 1 1 161 2.38 0.00 0 3 50 2 555.24908 1109.49089 0.92 40.98 3311 3311 MS2 13/16 Linfeng_20130204_CTCF_1.raw Medium LAADDFRLKYENEVALR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 508 2.38 0.00 2 49 50 3 675.02570 2023.06253 0.85 44.10 4041 4041 MS2 22/64 Linfeng_20130201_rIgG_10.raw High HGNSHQGEPR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 146 2.37 0.00 0 27 50 2 559.75708 1118.50688 -1.56 15.15 740 740 MS2 13/18 Linfeng_20130201_rIgG_5.raw High SLLEGEGSSGGGGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 352 2.37 0.00 0 0 50 2 631.80280 1262.59831 0.87 25.94 2145 2145 MS2 16/26 Linfeng_20130201_rIgG_10.raw High QSVEADINGLRR Unambiguous 5 1 P13645 CID 1.0000 0.0000 1 1 455 2.36 0.00 1 5 50 2 679.36273 1357.71819 -0.10 34.00 3099 3099 MS2 17/22 Linfeng_20130201_rIgG_7.raw Medium IRLENEIQTYR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 530 2.36 0.00 1 22 50 3 478.92715 1434.76691 -2.15 37.01 2903 2903 MS2 17/40 Linfeng_20130204_CTCF_1.raw High VTmQNLNDR Unambiguous 4 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 385 2.36 0.00 0 10 50 2 553.76605 1106.52483 -1.00 17.08 543 543 MS2 14/16 Linfeng_20130204_CTCF_1.raw Medium SQYEQLAEQNRKDAEAWFNEK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 352 2.36 0.00 2 14 10 3 862.07336 2584.20554 -0.32 45.86 3744 3744 MS2 20/80 Linfeng_20130204_CTCF_8.raw High DAEAWFNEK Unambiguous 2 1 P13645 CID 1.0000 0.0000 1 1 155 2.36 0.00 0 4 24 2 555.24847 1109.48967 -0.18 40.73 3677 3677 MS2 13/16 Linfeng_20130201_rIgG_2.raw High QSVEADINGLRR Unambiguous 5 1 P13645 CID 1.0000 0.0000 1 1 476 2.35 0.00 1 32 50 2 679.36212 1357.71697 -1.00 33.36 2934 2934 MS2 15/22 Linfeng_20130201_rIgG_2.raw High DAEAWFNEK Unambiguous 2 1 P13645 CID 1.0000 0.0000 1 1 161 2.35 0.00 0 3 50 2 555.24799 1109.48870 -1.06 42.04 3420 3420 MS2 13/16 Linfeng_20130204_CTCF_1.raw High QSLEASLAETEGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 411 2.35 0.00 0 0 50 2 695.84430 1390.68132 0.28 38.93 3499 3499 MS2 18/24 Linfeng_20130201_rIgG_3.raw High VTmQNLNDR Unambiguous 4 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 375 2.35 0.00 0 26 50 2 553.76630 1106.52532 -0.56 17.07 989 989 MS2 14/16 Linfeng_20130201_rIgG_1.raw High DAEAWFNEK Unambiguous 2 1 P13645 CID 1.0000 0.0000 1 1 148 2.35 0.00 0 2 15 2 555.24829 1109.48931 -0.51 41.43 3227 3227 MS2 13/16 Linfeng_20130204_CTCF_8.raw High SQYEQLAEQNRK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 452 2.34 0.00 1 0 50 2 747.37061 1493.73393 -0.27 23.42 1837 1837 MS2 10/22 Linfeng_20130201_rIgG_10.raw High QSLEASLAETEGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 412 2.34 0.00 0 3 40 2 695.84381 1390.68035 -0.42 37.46 3364 3364 MS2 20/24 Linfeng_20130201_rIgG_1.raw Medium NVQALEIELQSQLALK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 264 2.33 0.00 0 31 50 3 599.67322 1797.00510 -3.68 58.07 5781 5781 MS2 18/60 Linfeng_20130201_rIgG_7.raw High SLLEGEGSSGGGGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 309 2.32 0.00 0 7 50 2 631.80139 1262.59551 -1.35 25.73 2099 2099 MS2 15/26 Linfeng_20130201_rIgG_4.raw Medium LKYENEVALR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 481 2.32 0.00 1 21 50 3 412.23126 1234.67923 0.14 30.40 2643 2643 MS2 16/36 Linfeng_20130201_rIgG_2.raw High QSVEADINGLRR Unambiguous 5 1 P13645 CID 1.0000 0.0000 1 1 507 2.32 0.00 1 21 50 2 679.36182 1357.71636 -1.45 33.83 2988 2988 MS2 14/22 Linfeng_20130201_rIgG_10.raw High DAEAWFNEK Unambiguous 2 1 P13645 CID 1.0000 0.0000 1 1 161 2.31 0.00 0 9 40 2 555.24982 1109.49236 2.24 41.40 3012 3012 MS2 13/16 Linfeng_20130204_CTCF_6.raw High QSLEASLAETEGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 370 2.31 0.00 0 18 50 2 695.84271 1390.67815 -2.00 38.02 2958 2958 MS2 21/24 Linfeng_20130204_CTCF_2.raw High LKYENEVALR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 377 2.30 0.00 1 17 50 2 617.84241 1234.67754 -1.23 32.10 2374 2374 MS2 13/18 Linfeng_20130204_CTCF_2.raw High ALEESNYELEGK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 281 2.30 0.00 0 29 50 2 691.32703 1381.64678 -1.05 31.57 2776 2776 MS2 15/22 Linfeng_20130201_rIgG_9.raw High DAEAWFNEK Unambiguous 2 1 P13645 CID 1.0000 0.0000 1 1 152 2.29 0.00 0 4 17 2 555.24872 1109.49016 0.26 41.20 3286 3286 MS2 13/16 Linfeng_20130204_CTCF_2.raw Medium ISSSKGSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 455 2.29 0.00 1 4 50 3 737.35596 2210.05332 2.70 41.27 2998 2998 MS2 27/92 Linfeng_20130204_CTCF_6.raw High QSLEASLAETEGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 390 2.29 0.00 0 28 50 2 695.84412 1390.68096 0.02 38.35 2918 2918 MS2 19/24 Linfeng_20130204_CTCF_9.raw High VTMQNLNDR Unambiguous 4 3 P13645;P02533;P08779 CID 1.0000 0.0000 1 1 395 2.28 0.00 0 13 50 2 545.76813 1090.52898 -1.87 27.13 2288 2288 MS2 14/16 Linfeng_20130201_rIgG_9.raw High SLLEGEGSSGGGGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 319 2.28 0.00 0 0 50 2 631.80267 1262.59807 0.68 26.66 1801 1801 MS2 14/26 Linfeng_20130204_CTCF_1.raw High SLLEGEGSSGGGGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 358 2.28 0.00 0 22 50 2 631.80273 1262.59819 0.78 26.92 1831 1831 MS2 15/26 Linfeng_20130204_CTCF_1.raw Medium NHEEEmKDLR Unambiguous 1 1 P13645 M6(Oxidation) CID 1.0000 0.0000 1 1 156 2.28 0.00 1 12 50 3 439.53418 1316.58799 -1.53 15.74 351 351 MS2 16/36 Linfeng_20130204_CTCF_8.raw High SLLEGEGSSGGGGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 316 2.27 0.00 0 0 50 2 631.80133 1262.59538 -1.45 27.44 1596 1596 MS2 15/26 Linfeng_20130204_CTCF_6.raw High SLLEGEGSSGGGGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 338 2.27 0.00 0 10 50 2 631.80219 1262.59709 -0.09 27.19 2319 2319 MS2 17/26 Linfeng_20130201_rIgG_6.raw High LAADDFR Unambiguous 14 5 P13645;P02533;P08779;Q04695;Q15323 CID 1.0000 0.0000 1 1 387 2.25 0.00 0 5 50 2 404.20294 807.39861 -1.22 28.82 2487 2487 MS2 11/12 Linfeng_20130201_rIgG_1.raw High LKYENEVALR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 466 2.25 0.00 1 0 50 2 617.84344 1234.67961 0.45 30.62 2262 2262 MS2 13/18 Linfeng_20130204_CTCF_1.raw High LASYLDK Unambiguous 10 5 P13645;P02533;P08779;Q04695;P35527 CID 1.0000 0.0000 1 1 292 2.25 0.00 0 17 50 2 405.22327 809.43926 -1.38 27.99 1648 1648 MS2 11/12 Linfeng_20130204_CTCF_6.raw High QSVEADINGLRR Unambiguous 5 1 P13645 CID 1.0000 0.0000 1 1 551 2.24 0.00 1 5 50 2 679.36334 1357.71941 0.80 33.97 2555 2555 MS2 12/22 Linfeng_20130204_CTCF_2.raw High SQYEQLAEQNR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 348 2.24 0.00 0 0 50 2 683.32678 1365.64629 5.06 26.77 1787 1787 MS2 13/20 Linfeng_20130204_CTCF_2.raw High DAEAWFNEK Unambiguous 2 1 P13645 CID 1.0000 0.0000 1 1 148 2.23 0.00 0 6 30 2 555.24835 1109.48943 -0.40 40.77 3716 3716 MS2 13/16 Linfeng_20130201_rIgG_1.raw High ALEESNYELEGK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 295 2.22 0.00 0 38 50 2 691.32697 1381.64665 -1.13 31.76 2257 2257 MS2 15/22 Linfeng_20130204_CTCF_9.raw High RVLDELTLTK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 286 2.21 0.00 1 28 50 2 594.35303 1187.69878 -0.58 39.01 2984 2984 MS2 11/18 Linfeng_20130204_CTCF_9.raw High SLLEGEGSSGGGGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 340 2.20 0.00 0 0 50 2 631.80261 1262.59795 0.58 27.01 2273 2273 MS2 16/26 Linfeng_20130201_rIgG_9.raw High VTmQNLNDR Unambiguous 4 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 356 2.20 0.00 0 26 50 2 553.76721 1106.52715 1.09 17.27 548 548 MS2 12/16 Linfeng_20130204_CTCF_7.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 435 2.20 0.00 1 0 12 2 1106.55103 2212.09477 -1.47 49.34 4678 4678 MS2 14/36 Linfeng_20130201_rIgG_5.raw High DAEAWFNEK Unambiguous 2 1 P13645 CID 1.0000 0.0000 1 1 157 2.18 0.00 0 0 42 2 555.24780 1109.48833 -1.39 41.20 3743 3743 MS2 13/16 Linfeng_20130201_rIgG_9.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 424 2.18 0.00 1 0 20 2 1106.55127 2212.09526 -1.25 49.54 4675 4675 MS2 11/36 Linfeng_20130201_rIgG_9.raw High SLLEGEGSSGGGGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 313 2.17 0.00 0 12 50 2 631.80188 1262.59648 -0.58 27.07 2269 2269 MS2 15/26 Linfeng_20130201_rIgG_3.raw High DAEAWFNEK Unambiguous 2 1 P13645 CID 1.0000 0.0000 1 1 154 2.17 0.00 0 2 30 2 555.24774 1109.48821 -1.50 41.12 3729 3729 MS2 13/16 Linfeng_20130201_rIgG_10.raw High QSVEADINGLRR Unambiguous 5 1 P13645 CID 1.0000 0.0000 1 1 506 2.17 0.00 1 6 50 2 679.36230 1357.71733 -0.73 33.88 2973 2973 MS2 15/22 Linfeng_20130201_rIgG_4.raw High VTmQNLNDR Unambiguous 4 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 355 2.17 0.00 0 44 50 2 553.76691 1106.52654 0.54 17.17 977 977 MS2 15/16 Linfeng_20130201_rIgG_5.raw High QSLEASLAETEGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 429 2.17 0.00 0 12 36 2 695.84387 1390.68047 -0.33 38.56 3479 3479 MS2 19/24 Linfeng_20130201_rIgG_1.raw High SLLEGEGSSGGGGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 336 2.17 0.00 0 0 50 2 631.80255 1262.59783 0.49 27.19 2287 2287 MS2 17/26 Linfeng_20130201_rIgG_10.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 197 2.16 0.00 0 12 50 2 854.39087 1707.77446 1.31 52.70 4202 4202 MS2 11/36 Linfeng_20130204_CTCF_6.raw High DAEAWFNEK Unambiguous 2 1 P13645 CID 1.0000 0.0000 1 1 157 2.16 0.00 0 54 50 2 555.24847 1109.48967 -0.18 42.76 3492 3492 MS2 12/16 Linfeng_20130204_CTCF_1.raw High LASYLDK Unambiguous 10 5 P13645;P02533;P08779;Q04695;P35527 CID 1.0000 0.0000 1 1 277 2.15 0.00 0 1 50 2 405.22366 809.44005 -0.40 28.44 2014 2014 MS2 11/12 Linfeng_20130204_CTCF_1.raw High VTMQNLNDR Unambiguous 4 3 P13645;P02533;P08779 CID 1.0000 0.0000 1 1 391 2.14 0.00 0 5 50 2 545.76874 1090.53020 -0.75 27.10 1852 1852 MS2 13/16 Linfeng_20130204_CTCF_1.raw High QSLEASLAETEGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 412 2.14 0.00 0 20 50 2 695.84381 1390.68035 -0.42 37.45 3340 3340 MS2 18/24 Linfeng_20130201_rIgG_2.raw High SLLEGEGSSGGGGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 313 2.14 0.00 0 11 50 2 631.80048 1262.59368 -2.80 26.23 2020 2020 MS2 12/26 Linfeng_20130201_rIgG_5.raw High QSLEASLAETEGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 448 2.13 0.00 0 15 50 2 695.84552 1390.68376 2.04 38.35 2693 2693 MS2 12/24 Linfeng_20130204_CTCF_4.raw High VTmQNLNDR Unambiguous 4 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 354 2.13 0.00 0 0 50 2 553.76685 1106.52641 0.43 17.24 1005 1005 MS2 12/16 Linfeng_20130201_rIgG_9.raw High VTMQNLNDR Unambiguous 4 3 P13645;P02533;P08779 CID 1.0000 0.0000 1 1 403 2.13 0.00 0 12 50 2 545.76868 1090.53008 -0.87 27.21 2289 2289 MS2 12/16 Linfeng_20130201_rIgG_10.raw High SLLEGEGSSGGGGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 309 2.12 0.00 0 12 50 2 631.80127 1262.59526 -1.54 25.93 1693 1693 MS2 15/26 Linfeng_20130204_CTCF_2.raw High ALEESNYELEGK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 273 2.12 0.00 0 14 50 2 691.32794 1381.64861 0.28 31.70 2037 2037 MS2 13/22 Linfeng_20130204_CTCF_3.raw High LASYLDK Unambiguous 10 5 P13645;P02533;P08779;Q04695;P35527 CID 1.0000 0.0000 1 1 287 2.12 0.00 0 0 50 2 405.22348 809.43968 -0.85 34.21 2623 2623 MS2 9/12 Linfeng_20130204_CTCF_1.raw High DAEAWFNEK Unambiguous 2 1 P13645 CID 1.0000 0.0000 1 1 167 2.11 0.00 0 11 42 2 555.24915 1109.49101 1.03 42.45 3123 3123 MS2 13/16 Linfeng_20130204_CTCF_6.raw High DAEAWFNEK Unambiguous 2 1 P13645 CID 1.0000 0.0000 1 1 155 2.11 0.00 0 2 15 2 555.24896 1109.49065 0.70 41.47 3017 3017 MS2 13/16 Linfeng_20130204_CTCF_3.raw High QSVEADINGLRR Unambiguous 5 1 P13645 CID 1.0000 0.0000 1 1 458 2.10 0.00 1 13 50 2 679.36157 1357.71587 -1.81 35.04 3089 3089 MS2 10/22 Linfeng_20130201_rIgG_4.raw High DAEAWFNEK Unambiguous 2 1 P13645 CID 1.0000 0.0000 1 1 163 2.10 0.00 0 45 50 2 555.24884 1109.49040 0.48 42.55 3128 3128 MS2 13/16 Linfeng_20130204_CTCF_3.raw High QSLEASLAETEGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 412 2.08 0.00 0 0 44 2 695.84393 1390.68059 -0.25 38.90 3481 3481 MS2 18/24 Linfeng_20130201_rIgG_4.raw High DAEAWFNEK Unambiguous 2 1 P13645 CID 1.0000 0.0000 1 1 165 2.08 0.00 0 19 50 2 555.24799 1109.48870 -1.06 41.85 3831 3831 MS2 13/16 Linfeng_20130201_rIgG_1.raw High VTmQNLNDR Unambiguous 4 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 376 2.08 0.00 0 35 50 2 553.76636 1106.52544 -0.45 17.23 1003 1003 MS2 11/16 Linfeng_20130201_rIgG_10.raw High QSVEADINGLRR Unambiguous 5 1 P13645 CID 1.0000 0.0000 1 1 511 2.08 0.00 1 41 50 2 679.36200 1357.71672 -1.18 34.53 2512 2512 MS2 13/22 Linfeng_20130204_CTCF_7.raw High QSVEADINGLRR Unambiguous 5 1 P13645 CID 1.0000 0.0000 1 1 453 2.08 0.00 1 2 50 2 679.36285 1357.71843 0.08 33.81 2983 2983 MS2 17/22 Linfeng_20130201_rIgG_3.raw High DAEAWFNEK Unambiguous 2 1 P13645 CID 1.0000 0.0000 1 1 163 2.07 0.00 0 19 50 2 555.24847 1109.48967 -0.18 42.58 3355 3355 MS2 12/16 Linfeng_20130204_CTCF_9.raw High QSVEADINGLRR Unambiguous 5 1 P13645 CID 1.0000 0.0000 1 1 548 2.07 0.00 1 11 17 2 679.36359 1357.71990 1.16 33.89 2790 2790 MS2 16/22 Linfeng_20130201_rIgG_5.raw High SQYEQLAEQNRK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 431 2.06 0.00 1 13 50 2 747.36987 1493.73247 -1.25 23.47 1883 1883 MS2 10/22 Linfeng_20130201_rIgG_7.raw High HGNSHQGEPR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 167 2.05 0.00 0 13 50 2 559.75751 1118.50774 -0.80 15.19 761 761 MS2 10/18 Linfeng_20130201_rIgG_3.raw High QSVEADINGLRR Unambiguous 5 1 P13645 CID 1.0000 0.0000 1 1 468 2.05 0.00 1 29 35 2 679.36292 1357.71855 0.17 34.76 2534 2534 MS2 10/22 Linfeng_20130204_CTCF_7.raw High SLLEGEGSSGGGGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 312 2.05 0.00 0 0 50 2 631.80139 1262.59551 -1.35 26.85 1822 1822 MS2 15/26 Linfeng_20130204_CTCF_1.raw High QSVEADINGLRR Unambiguous 5 1 P13645 CID 1.0000 0.0000 1 1 485 2.04 0.00 1 0 50 2 679.36285 1357.71843 0.08 34.46 3042 3042 MS2 14/22 Linfeng_20130201_rIgG_2.raw High SLLEGEGSSGGGGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 299 2.04 0.00 0 0 50 2 631.80151 1262.59575 -1.16 27.16 1568 1568 MS2 13/26 Linfeng_20130204_CTCF_6.raw High LASYLDK Unambiguous 10 5 P13645;P02533;P08779;Q04695;P35527 CID 1.0000 0.0000 1 1 282 2.03 0.00 0 0 50 2 405.22336 809.43944 -1.15 27.42 1890 1890 MS2 9/12 Linfeng_20130204_CTCF_1.raw High SQYEQLAEQNRK Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 461 2.02 0.00 1 0 50 2 747.37036 1493.73345 -0.60 23.70 1363 1363 MS2 11/22 Linfeng_20130204_CTCF_8.raw High SLLEGEGSSGGGGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 346 2.02 0.00 0 8 50 2 631.80267 1262.59807 0.68 27.05 2302 2302 MS2 14/26 Linfeng_20130201_rIgG_6.raw High SLLEGEGSSGGGGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 323 2.02 0.00 0 0 50 2 631.80219 1262.59709 -0.09 26.75 1811 1811 MS2 13/26 Linfeng_20130204_CTCF_1.raw High SLLEGEGSSGGGGR Unambiguous 1 1 P13645 CID 1.0000 0.0000 1 1 332 2.02 0.00 0 0 50 2 631.80243 1262.59758 0.29 25.97 2178 2178 MS2 16/26 Linfeng_20130201_rIgG_6.raw High DAEAWFNEK Unambiguous 2 1 P13645 CID 1.0000 0.0000 1 1 162 2.00 0.00 0 41 50 2 555.24860 1109.48992 0.04 42.32 3852 3852 MS2 14/16 Linfeng_20130201_rIgG_3.raw P05387 60S acidic ribosomal protein P2 OS=Homo sapiens GN=RPLP2 PE=1 SV=1 - [RLA2_HUMAN] 50.43 1 3 3 3 0.00 10.85 50.43 3 3 115 11.7 4.54 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEK Unambiguous 1 1 P05387 CID 1.0000 0.0000 1 1 397 4.03 0.00 0 1 30 3 925.48291 2774.43418 0.75 38.30 2856 2856 MS2 27/128 Linfeng_20130204_CTCF_10.raw High NIEDVIAQGIGK Unambiguous 1 1 P05387 CID 1.0000 0.0000 1 1 433 3.83 0.00 0 11 50 2 628.84747 1256.68767 2.47 51.69 4303 4303 MS2 18/22 Linfeng_20130204_CTCF_10.raw High ILDSVGIEADDDR Unambiguous 1 1 P05387 CID 1.0000 0.0000 1 1 373 2.99 0.00 0 24 50 2 709.34351 1417.67974 -0.62 37.49 2774 2774 MS2 17/24 Linfeng_20130204_CTCF_10.raw P48668 "Keratin, type II cytoskeletal 6C OS=Homo sapiens GN=KRT6C PE=1 SV=3 - [K2C6C_HUMAN]" 46.45 3 1 24 190 352.88 44.33 21 113 230.55 36.88 19 77 564 60.0 8.00 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High ALYDAELSQmQTHISDTSVVLSmDNNR Unambiguous 6 3 P02538;P04259;P48668 M10(Oxidation); M23(Oxidation) CID 1.0000 0.0000 1 1 260 5.99 0.00 0 0 13 3 1024.14258 3070.41318 1.25 44.05 4003 4003 MS2 38/104 Linfeng_20130201_rIgG_5.raw High ALYDAELSQmQTHISDTSVVLSmDNNR Unambiguous 6 3 P02538;P04259;P48668 M10(Oxidation); M23(Oxidation) CID 1.0000 0.0000 1 1 259 5.85 0.00 0 0 30 3 1024.14197 3070.41135 0.66 44.19 4085 4085 MS2 36/104 Linfeng_20130201_rIgG_1.raw High AEAESWYQTKYEELQVTAGR Unambiguous 5 2 P02538;P48668 CID 1.0000 0.0000 1 1 391 5.43 0.00 1 2 2 3 787.04529 2359.12131 0.49 45.87 4231 4231 MS2 37/76 Linfeng_20130201_rIgG_5.raw High ALYDAELSQmQTHISDTSVVLSmDNNR Unambiguous 6 3 P02538;P04259;P48668 M10(Oxidation); M23(Oxidation) CID 1.0000 0.0000 1 1 253 5.31 0.00 0 0 50 3 1024.14099 3070.40842 -0.30 44.23 4038 4038 MS2 35/104 Linfeng_20130201_rIgG_2.raw High ALYDAELSQmQTHISDTSVVLSmDNNR Unambiguous 6 3 P02538;P04259;P48668 M10(Oxidation); M23(Oxidation) CID 1.0000 0.0000 1 1 259 5.25 0.00 0 0 50 3 1024.14197 3070.41135 0.66 44.34 4102 4102 MS2 38/104 Linfeng_20130201_rIgG_6.raw High AEAESWYQTKYEELQVTAGR Unambiguous 5 2 P02538;P48668 CID 1.0000 0.0000 1 1 395 5.09 0.00 1 10 40 3 787.04559 2359.12223 0.88 45.88 4227 4227 MS2 37/76 Linfeng_20130201_rIgG_3.raw High AIGGGLSSVGGGSSTIK Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 463 5.03 0.00 0 8 50 2 724.39142 1447.77556 0.26 34.16 2819 2819 MS2 26/32 Linfeng_20130201_rIgG_5.raw High AEAESWYQTKYEELQVTAGR Unambiguous 5 2 P02538;P48668 CID 1.0000 0.0000 1 1 410 4.93 0.00 1 6 37 3 787.04742 2359.12772 3.20 46.14 3519 3519 MS2 29/76 Linfeng_20130204_CTCF_6.raw High ALYDAELSQmQTHISDTSVVLSmDNNR Unambiguous 6 3 P02538;P04259;P48668 M10(Oxidation); M23(Oxidation) CID 1.0000 0.0000 1 1 260 4.87 0.00 0 0 49 3 1024.14124 3070.40915 -0.06 44.36 4065 4065 MS2 39/104 Linfeng_20130201_rIgG_3.raw High AIGGGLSSVGGGSSTIK Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 473 4.82 0.00 0 13 50 2 724.39331 1447.77934 2.88 34.37 2278 2278 MS2 26/32 Linfeng_20130204_CTCF_6.raw High SRAEAESWYQTKYEELQVTAGR Unambiguous 5 2 P02538;P48668 CID 1.0000 0.0000 1 1 448 4.56 0.00 2 0 14 3 868.09106 2602.25864 2.05 43.80 3266 3266 MS2 26/84 Linfeng_20130204_CTCF_6.raw High AIGGGLSSVGGGSSTIK Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 493 4.52 0.00 0 3 30 2 724.39191 1447.77654 0.94 35.10 2921 2921 MS2 27/32 Linfeng_20130201_rIgG_5.raw High AIGGGLSSVGGGSSTIK Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 497 4.45 0.00 0 0 50 2 724.39337 1447.77947 2.96 35.45 2386 2386 MS2 28/32 Linfeng_20130204_CTCF_6.raw High AIGGGLSSVGGGSSTIK Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 441 4.44 0.00 0 8 50 2 724.39063 1447.77397 -0.83 34.23 2582 2582 MS2 23/32 Linfeng_20130204_CTCF_2.raw High AIGGGLSSVGGGSSTIK Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 452 4.34 0.00 0 0 50 2 724.39099 1447.77471 -0.33 34.15 3017 3017 MS2 26/32 Linfeng_20130201_rIgG_3.raw High AIGGGLSSVGGGSSTIKYTTTSSSSR Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 534 4.27 0.00 1 6 9 3 806.74316 2418.21494 1.72 35.50 2965 2965 MS2 32/100 Linfeng_20130201_rIgG_5.raw High ALYDAELSQmQTHISDTSVVLSmDNNR Unambiguous 6 3 P02538;P04259;P48668 M10(Oxidation); M23(Oxidation) CID 1.0000 0.0000 1 1 263 4.20 0.00 0 0 50 3 1024.14343 3070.41574 2.09 44.45 3336 3336 MS2 24/104 Linfeng_20130204_CTCF_6.raw High AIGGGLSSVGGGSSTIK Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 452 4.14 0.00 0 6 50 2 724.38995 1447.77263 -1.76 34.13 3028 3028 MS2 25/32 Linfeng_20130201_rIgG_9.raw High AIGGGLSSVGGGSSTIK Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 454 4.13 0.00 0 0 50 2 724.39099 1447.77471 -0.33 34.20 3025 3025 MS2 23/32 Linfeng_20130201_rIgG_10.raw High AIGGGLSSVGGGSSTIK Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 463 4.13 0.00 0 0 50 2 724.39124 1447.77519 0.01 34.20 3005 3005 MS2 28/32 Linfeng_20130201_rIgG_4.raw High AIGGGLSSVGGGSSTIK Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 494 4.08 0.00 0 4 50 2 724.39014 1447.77300 -1.51 35.37 3151 3151 MS2 24/32 Linfeng_20130201_rIgG_9.raw High AIGGGLSSVGGGSSTIKYTTTSSSSR Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 540 4.04 0.00 1 2 36 3 806.74194 2418.21128 0.20 35.69 3170 3170 MS2 33/100 Linfeng_20130201_rIgG_3.raw High AIGGGLSSVGGGSSTIKYTTTSSSSR Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 534 3.99 0.00 1 8 50 3 806.74127 2418.20926 -0.63 35.76 3273 3273 MS2 34/100 Linfeng_20130201_rIgG_7.raw High NKLEGLEDALQK Unambiguous 6 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 494 3.96 0.00 1 31 50 2 679.37103 1357.73479 1.88 40.15 2876 2876 MS2 19/22 Linfeng_20130204_CTCF_6.raw High AIGGGLSSVGGGSSTIKYTTTSSSSR Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 530 3.94 0.00 1 19 50 3 806.74121 2418.20908 -0.70 35.66 3151 3151 MS2 30/100 Linfeng_20130201_rIgG_4.raw High AIGGGLSSVGGGSSTIK Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 470 3.92 0.00 0 3 50 2 724.39203 1447.77678 1.10 34.45 2504 2504 MS2 24/32 Linfeng_20130204_CTCF_7.raw High AIGGGLSSVGGGSSTIK Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 493 3.88 0.00 0 21 50 2 724.39172 1447.77617 0.68 33.93 2990 2990 MS2 24/32 Linfeng_20130201_rIgG_2.raw High AIGGGLSSVGGGSSTIK Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 391 3.85 0.00 0 0 50 2 724.39160 1447.77593 0.51 34.37 2302 2302 MS2 21/32 Linfeng_20130204_CTCF_3.raw High ISIGGGScAISGGYGSR Unambiguous 6 3 P02538;P04259;P48668 C8(Carbamidomethyl) CID 1.0000 0.0000 1 1 353 3.79 0.00 0 6 50 2 799.88300 1598.75871 -0.31 36.91 2746 2746 MS2 21/32 Linfeng_20130204_CTCF_7.raw High ALYDAELSQmQTHISDTSVVLSmDNNR Unambiguous 6 3 P02538;P04259;P48668 M10(Oxidation); M23(Oxidation) CID 1.0000 0.0000 1 1 262 3.79 0.00 0 0 50 3 1024.14270 3070.41355 1.37 44.35 3612 3612 MS2 28/104 Linfeng_20130204_CTCF_2.raw High AIGGGLSSVGGGSSTIK Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 451 3.78 0.00 0 11 50 2 724.39105 1447.77483 -0.24 33.89 3006 3006 MS2 24/32 Linfeng_20130201_rIgG_1.raw High AIGGGLSSVGGGSSTIK Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 436 3.74 0.00 0 12 50 2 724.39380 1447.78032 3.55 34.55 2315 2315 MS2 21/32 Linfeng_20130204_CTCF_4.raw High ISIGGGScAISGGYGSR Unambiguous 6 3 P02538;P04259;P48668 C8(Carbamidomethyl) CID 1.0000 0.0000 1 1 344 3.67 0.00 0 9 50 2 799.88281 1598.75835 -0.54 36.16 3233 3233 MS2 20/32 Linfeng_20130201_rIgG_1.raw High ALYDAELSQmQTHISDTSVVLSmDNNR Unambiguous 6 3 P02538;P04259;P48668 M10(Oxidation); M23(Oxidation) CID 1.0000 0.0000 1 1 265 3.63 0.00 0 2 27 3 1024.14221 3070.41208 0.90 44.65 3358 3358 MS2 25/104 Linfeng_20130204_CTCF_6.raw High ISIGGGScAISGGYGSR Unambiguous 6 3 P02538;P04259;P48668 C8(Carbamidomethyl) CID 1.0000 0.0000 1 1 333 3.56 0.00 0 12 50 2 799.88422 1598.76116 1.22 36.85 2547 2547 MS2 16/32 Linfeng_20130204_CTCF_3.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 371 3.54 0.00 0 5 7 2 632.35077 1263.69426 -0.09 50.01 4794 4794 MS2 18/20 Linfeng_20130201_rIgG_1.raw High AIGGGLSSVGGGSSTIK Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 446 3.53 0.00 0 9 50 2 724.39105 1447.77483 -0.24 34.30 3078 3078 MS2 24/32 Linfeng_20130201_rIgG_6.raw High ISIGGGScAISGGYGSR Unambiguous 6 3 P02538;P04259;P48668 C8(Carbamidomethyl) CID 1.0000 0.0000 1 1 392 3.53 0.00 0 25 50 2 799.88428 1598.76128 1.30 36.41 2842 2842 MS2 18/32 Linfeng_20130204_CTCF_1.raw High ISIGGGScAISGGYGSR Unambiguous 6 3 P02538;P04259;P48668 C8(Carbamidomethyl) CID 1.0000 0.0000 1 1 384 3.52 0.00 0 30 50 2 799.88287 1598.75847 -0.46 37.06 2730 2730 MS2 19/32 Linfeng_20130204_CTCF_10.raw High SRAEAESWYQTKYEELQVTAGR Unambiguous 5 2 P02538;P48668 CID 1.0000 0.0000 1 1 459 3.49 0.00 2 35 50 4 651.31879 2602.25332 0.00 43.42 3966 3966 MS2 33/126 Linfeng_20130201_rIgG_3.raw High ALYDAELSQmQTHISDTSVVLSmDNNR Unambiguous 6 3 P02538;P04259;P48668 M10(Oxidation); M23(Oxidation) CID 1.0000 0.0000 1 1 262 3.48 0.00 0 2 8 4 768.35876 3070.41323 1.27 44.24 4027 4027 MS2 36/156 Linfeng_20130201_rIgG_5.raw High AIGGGLSSVGGGSSTIKYTTTSSSSR Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 549 3.47 0.00 1 11 50 3 806.74243 2418.21274 0.81 35.55 3172 3172 MS2 30/100 Linfeng_20130201_rIgG_1.raw High AIGGGLSSVGGGSSTIK Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 481 3.45 0.00 0 13 50 2 724.39142 1447.77556 0.26 34.36 3135 3135 MS2 20/32 Linfeng_20130201_rIgG_7.raw High NKLEGLEDALQK Unambiguous 6 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 511 3.43 0.00 1 5 50 3 453.24884 1357.73197 -0.20 39.96 3593 3593 MS2 27/44 Linfeng_20130201_rIgG_4.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 381 3.43 0.00 0 3 7 2 632.35175 1263.69621 1.45 50.26 4722 4722 MS2 18/20 Linfeng_20130201_rIgG_2.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 557 3.39 0.00 2 2 50 3 436.88916 1308.65293 -1.05 21.12 1536 1536 MS2 21/36 Linfeng_20130201_rIgG_10.raw High ISIGGGScAISGGYGSR Unambiguous 6 3 P02538;P04259;P48668 C8(Carbamidomethyl) CID 1.0000 0.0000 1 1 376 3.38 0.00 0 13 50 2 799.88348 1598.75969 0.30 36.44 3246 3246 MS2 20/32 Linfeng_20130201_rIgG_3.raw High SRAEAESWYQTKYEELQVTAGR Unambiguous 5 2 P02538;P48668 CID 1.0000 0.0000 1 1 447 3.37 0.00 2 7 4 4 651.31854 2602.25234 -0.37 43.24 3900 3900 MS2 38/126 Linfeng_20130201_rIgG_5.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 380 3.36 0.00 0 7 17 2 632.35144 1263.69560 0.97 50.45 4817 4817 MS2 18/20 Linfeng_20130201_rIgG_6.raw High NKLEGLEDALQK Unambiguous 6 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 491 3.35 0.00 1 31 50 2 679.36975 1357.73223 -0.01 39.83 3580 3580 MS2 19/22 Linfeng_20130201_rIgG_4.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 364 3.35 0.00 0 0 23 2 632.35095 1263.69463 0.19 50.50 4792 4792 MS2 18/20 Linfeng_20130201_rIgG_9.raw High LLKEYQELmNVK Unambiguous 6 3 P02538;P04259;P48668 M9(Oxidation) CID 1.0000 0.0000 1 1 458 3.34 0.00 1 17 13 3 508.60922 1523.81311 -0.49 37.22 3155 3155 MS2 24/44 Linfeng_20130201_rIgG_5.raw High ISIGGGScAISGGYGSR Unambiguous 6 3 P02538;P04259;P48668 C8(Carbamidomethyl) CID 1.0000 0.0000 1 1 369 3.32 0.00 0 21 50 2 799.88257 1598.75786 -0.84 36.58 3261 3261 MS2 20/32 Linfeng_20130201_rIgG_10.raw High AIGGGLSSVGGGSSTIKYTTTSSSSR Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 541 3.30 0.00 1 12 50 3 806.74194 2418.21128 0.20 35.49 3144 3144 MS2 31/100 Linfeng_20130201_rIgG_2.raw High AIGGGLSSVGGGSSTIK Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 431 3.30 0.00 0 3 50 2 724.39130 1447.77532 0.09 34.86 2507 2507 MS2 18/32 Linfeng_20130204_CTCF_10.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 370 3.30 0.00 0 1 9 2 632.35095 1263.69463 0.19 50.48 4784 4784 MS2 18/20 Linfeng_20130201_rIgG_10.raw High ISIGGGScAISGGYGSR Unambiguous 6 3 P02538;P04259;P48668 C8(Carbamidomethyl) CID 1.0000 0.0000 1 1 383 3.29 0.00 0 31 50 2 799.88397 1598.76067 0.91 36.61 3247 3247 MS2 18/32 Linfeng_20130201_rIgG_4.raw High AIGGGLSSVGGGSSTIKYTTTSSSSR Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 550 3.29 0.00 1 16 50 3 806.74182 2418.21091 0.05 35.77 3223 3223 MS2 32/100 Linfeng_20130201_rIgG_6.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 369 3.29 0.00 0 13 50 2 632.35126 1263.69524 0.68 50.66 3993 3993 MS2 18/20 Linfeng_20130204_CTCF_6.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 373 3.29 0.00 0 6 18 2 632.35089 1263.69451 0.10 50.14 4276 4276 MS2 17/20 Linfeng_20130204_CTCF_1.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 412 3.29 0.00 0 4 50 2 632.35089 1263.69451 0.10 51.23 4389 4389 MS2 18/20 Linfeng_20130204_CTCF_1.raw High VLDTKWTLLQEQGTK Unambiguous 7 3 P13647;P04259;P48668 CID 1.0000 0.0000 1 1 439 3.27 0.00 1 30 11 3 587.32513 1759.96085 1.08 44.85 4102 4102 MS2 23/56 Linfeng_20130201_rIgG_5.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 544 3.26 0.00 2 7 50 3 436.88925 1308.65320 -0.84 21.06 1533 1533 MS2 20/36 Linfeng_20130201_rIgG_3.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 546 3.25 0.00 2 8 50 3 436.88937 1308.65357 -0.56 20.77 1473 1473 MS2 19/36 Linfeng_20130201_rIgG_2.raw High NKLEGLEDALQK Unambiguous 6 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 537 3.25 0.00 1 9 50 3 453.25003 1357.73554 2.43 40.13 2874 2874 MS2 21/44 Linfeng_20130204_CTCF_6.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 404 3.24 0.00 0 9 28 2 632.35107 1263.69487 0.39 50.67 4337 4337 MS2 17/20 Linfeng_20130204_CTCF_8.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 391 3.23 0.00 0 9 21 2 632.35101 1263.69475 0.29 50.32 4757 4757 MS2 18/20 Linfeng_20130201_rIgG_4.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 412 3.19 0.00 0 16 20 2 632.35083 1263.69438 0.00 51.10 4927 4927 MS2 18/20 Linfeng_20130201_rIgG_1.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 384 3.19 0.00 0 0 28 2 632.35083 1263.69438 0.00 50.46 4287 4287 MS2 18/20 Linfeng_20130204_CTCF_2.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 543 3.18 0.00 2 3 50 3 436.88934 1308.65348 -0.63 21.08 1503 1503 MS2 19/36 Linfeng_20130201_rIgG_4.raw High LLKEYQELmNVK Unambiguous 6 3 P02538;P04259;P48668 M9(Oxidation) CID 1.0000 0.0000 1 1 449 3.17 0.00 1 14 50 2 762.41217 1523.81706 2.11 37.45 3181 3181 MS2 17/22 Linfeng_20130201_rIgG_5.raw High LLKEYQELMNVK Unambiguous 6 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 429 3.17 0.00 1 5 20 3 503.27826 1507.82022 0.85 45.78 3479 3479 MS2 22/44 Linfeng_20130204_CTCF_6.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 369 3.16 0.00 0 3 15 2 632.35052 1263.69377 -0.48 50.69 4239 4239 MS2 18/20 Linfeng_20130204_CTCF_7.raw High AIGGGLSSVGGGSSTIK Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 452 3.16 0.00 0 25 50 2 724.39154 1447.77580 0.43 34.14 2616 2616 MS2 16/32 Linfeng_20130204_CTCF_1.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 368 3.14 0.00 1 8 3 2 541.80359 1082.59990 0.50 38.24 3272 3272 MS2 15/16 Linfeng_20130201_rIgG_5.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 360 3.13 0.00 0 5 50 2 632.35236 1263.69744 2.42 50.69 3979 3979 MS2 18/20 Linfeng_20130204_CTCF_4.raw High DVDAAYMNKVELQAK Unambiguous 8 4 P02538;P04259;P48668;H9KV51 CID 1.0000 0.0000 1 1 513 3.13 0.00 1 5 37 3 565.61987 1694.84507 1.88 38.47 2694 2694 MS2 20/56 Linfeng_20130204_CTCF_6.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 529 3.11 0.00 2 1 50 3 436.88965 1308.65439 0.07 21.08 1536 1536 MS2 20/36 Linfeng_20130201_rIgG_9.raw High NKLEGLEDALQK Unambiguous 6 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 495 3.10 0.00 1 14 41 2 679.37000 1357.73271 0.35 39.76 3466 3466 MS2 17/22 Linfeng_20130201_rIgG_5.raw High VLDTKWTLLQEQGTK Unambiguous 7 3 P13647;P04259;P48668 CID 1.0000 0.0000 1 1 439 3.09 0.00 1 18 15 3 587.32489 1759.96012 0.66 45.13 3410 3410 MS2 22/56 Linfeng_20130204_CTCF_6.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 533 3.08 0.00 2 4 50 3 436.88953 1308.65403 -0.21 21.39 1584 1584 MS2 21/36 Linfeng_20130201_rIgG_6.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 338 3.07 0.00 0 13 50 2 632.35077 1263.69426 -0.09 50.61 3969 3969 MS2 18/20 Linfeng_20130204_CTCF_3.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 442 3.07 0.00 0 2 50 2 554.27460 1107.54192 -0.93 25.34 1393 1393 MS2 14/16 Linfeng_20130204_CTCF_6.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 311 3.05 0.00 1 21 50 2 541.80347 1082.59966 0.27 38.69 3473 3473 MS2 15/16 Linfeng_20130201_rIgG_3.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 389 3.05 0.00 0 4 9 2 632.35114 1263.69499 0.48 50.37 4753 4753 MS2 18/20 Linfeng_20130201_rIgG_3.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 343 3.04 0.00 1 56 50 2 541.80585 1082.60442 4.67 39.54 2816 2816 MS2 13/16 Linfeng_20130204_CTCF_4.raw High YEELQVTAGR Unambiguous 5 2 P02538;P48668 CID 1.0000 0.0000 1 1 543 3.04 0.00 0 11 30 2 583.29614 1165.58501 0.16 32.50 2088 2088 MS2 17/18 Linfeng_20130204_CTCF_6.raw High QcASLQAAIADAEQRGEMALKDAK Unambiguous 2 1 P48668 C2(Carbamidomethyl) CID 1.0000 0.0000 1 1 479 3.03 0.00 2 22 15 3 859.08478 2575.23978 -8.02 42.72 3921 3921 MS2 20/92 Linfeng_20130201_rIgG_8.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 366 3.02 0.00 1 17 36 2 541.80377 1082.60027 0.84 38.78 3468 3468 MS2 15/16 Linfeng_20130201_rIgG_4.raw High ISIGGGScAISGGYGSR Unambiguous 6 3 P02538;P04259;P48668 C8(Carbamidomethyl) CID 1.0000 0.0000 1 1 357 3.02 0.00 0 26 50 2 799.88312 1598.75896 -0.15 36.23 3218 3218 MS2 19/32 Linfeng_20130201_rIgG_2.raw High LALDVEIATYRK Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 301 3.02 0.00 1 25 23 2 696.39807 1391.78887 -0.35 44.32 4037 4037 MS2 17/22 Linfeng_20130201_rIgG_5.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 648 2.99 0.00 0 1 5 2 602.32263 1203.63799 0.94 42.65 3143 3143 MS2 17/18 Linfeng_20130204_CTCF_6.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 442 2.96 0.00 0 7 50 2 554.27441 1107.54155 -1.26 26.19 1475 1475 MS2 14/16 Linfeng_20130204_CTCF_6.raw High TAAENEFVTLK Unambiguous 6 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 515 2.95 0.00 0 9 37 2 611.81964 1222.63201 0.45 38.68 2716 2716 MS2 15/20 Linfeng_20130204_CTCF_6.raw High NLDLDSIIAEVK Unambiguous 13 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 586 2.92 0.00 0 22 40 2 665.36633 1329.72539 -0.53 50.96 4023 4023 MS2 18/22 Linfeng_20130204_CTCF_6.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 361 2.92 0.00 0 4 50 2 632.35059 1263.69390 -0.38 50.96 4291 4291 MS2 17/20 Linfeng_20130204_CTCF_9.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 352 2.92 0.00 1 19 50 2 541.80304 1082.59880 -0.52 38.29 3426 3426 MS2 15/16 Linfeng_20130201_rIgG_2.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 581 2.92 0.00 0 16 50 2 602.32123 1203.63518 -1.40 41.17 3330 3330 MS2 16/18 Linfeng_20130204_CTCF_1.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 429 2.90 0.00 0 28 8 2 632.35022 1263.69316 -0.96 50.11 4779 4779 MS2 18/20 Linfeng_20130201_rIgG_5.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 330 2.90 0.00 1 11 50 2 541.80341 1082.59953 0.16 38.46 3467 3467 MS2 15/16 Linfeng_20130201_rIgG_1.raw High LALDVEIATYRK Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 297 2.89 0.00 1 40 50 2 696.39825 1391.78923 -0.09 44.41 4063 4063 MS2 17/22 Linfeng_20130201_rIgG_4.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 391 2.88 0.00 0 4 27 2 632.35120 1263.69512 0.58 50.42 4851 4851 MS2 18/20 Linfeng_20130201_rIgG_7.raw High AIGGGLSSVGGGSSTIKYTTTSSSSR Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 530 2.86 0.00 1 33 50 3 806.74103 2418.20853 -0.93 35.79 3182 3182 MS2 25/100 Linfeng_20130201_rIgG_10.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 413 2.86 0.00 0 16 50 2 632.35260 1263.69792 2.80 51.92 4119 4119 MS2 16/20 Linfeng_20130204_CTCF_6.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 325 2.81 0.00 1 10 50 2 541.80310 1082.59892 -0.40 38.88 3045 3045 MS2 15/16 Linfeng_20130204_CTCF_2.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 450 2.80 0.00 0 0 16 2 632.35016 1263.69304 -1.06 50.43 4886 4886 MS2 17/20 Linfeng_20130201_rIgG_8.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 353 2.79 0.00 1 35 16 2 541.80286 1082.59844 -0.85 38.84 3353 3353 MS2 15/16 Linfeng_20130201_rIgG_5.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 657 2.78 0.00 0 6 50 2 602.32220 1203.63713 0.23 41.80 3396 3396 MS2 15/18 Linfeng_20130204_CTCF_1.raw High AIGGGLSSVGGGSSTIKYTTTSSSSR Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 540 2.78 0.00 1 4 50 3 806.74152 2418.21000 -0.33 35.80 3194 3194 MS2 29/100 Linfeng_20130201_rIgG_9.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 370 2.76 0.00 1 11 17 2 541.80353 1082.59978 0.39 39.08 2759 2759 MS2 15/16 Linfeng_20130204_CTCF_6.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 657 2.74 0.00 0 7 17 2 602.32214 1203.63701 0.12 41.62 3035 3035 MS2 16/18 Linfeng_20130204_CTCF_6.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 677 2.74 0.00 0 28 50 2 602.32190 1203.63652 -0.28 41.92 3262 3262 MS2 16/18 Linfeng_20130204_CTCF_7.raw Medium SRAEAESWYQTKYEELQVTAGR Unambiguous 5 2 P02538;P48668 CID 1.0000 0.0000 1 1 449 2.74 0.00 2 9 5 4 651.32019 2602.25893 2.16 43.68 3253 3253 MS2 28/126 Linfeng_20130204_CTCF_6.raw High NKLEGLEDALQK Unambiguous 6 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 521 2.73 0.00 1 20 50 3 453.24881 1357.73188 -0.27 40.09 3172 3172 MS2 20/44 Linfeng_20130204_CTCF_2.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 339 2.71 0.00 1 0 17 2 541.80212 1082.59697 -2.21 38.74 3340 3340 MS2 15/16 Linfeng_20130201_rIgG_5.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 370 2.71 0.00 1 33 50 2 541.80371 1082.60015 0.72 39.05 3606 3606 MS2 14/16 Linfeng_20130201_rIgG_7.raw High RGFSANSAR Unambiguous 4 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 371 2.70 0.00 1 11 50 2 483.24899 965.49071 -0.51 16.73 923 923 MS2 15/16 Linfeng_20130201_rIgG_5.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 408 2.70 0.00 0 30 38 2 632.35114 1263.69499 0.48 51.32 4875 4875 MS2 17/20 Linfeng_20130201_rIgG_4.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 358 2.68 0.00 1 50 50 2 541.80542 1082.60356 3.88 39.43 3002 3002 MS2 15/16 Linfeng_20130204_CTCF_7.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 463 2.68 0.00 0 0 50 2 554.27625 1107.54521 2.04 26.06 2157 2157 MS2 14/16 Linfeng_20130201_rIgG_10.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 507 2.68 0.00 0 16 50 2 554.27521 1107.54314 0.17 25.15 1911 1911 MS2 14/16 Linfeng_20130201_rIgG_5.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 367 2.67 0.00 1 35 50 2 541.80475 1082.60222 2.64 39.63 3049 3049 MS2 15/16 Linfeng_20130204_CTCF_9.raw High RGFSANSAR Unambiguous 4 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 374 2.66 0.00 1 5 50 2 483.24878 965.49028 -0.95 16.19 855 855 MS2 13/16 Linfeng_20130201_rIgG_5.raw High SRAEAESWYQTK Unambiguous 7 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 329 2.65 0.00 1 12 50 3 485.89960 1455.68424 -1.44 28.31 1680 1680 MS2 17/44 Linfeng_20130204_CTCF_6.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 393 2.64 0.00 0 21 50 2 632.35425 1263.70122 5.41 51.62 4404 4404 MS2 15/20 Linfeng_20130204_CTCF_2.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 419 2.63 0.00 0 0 31 2 632.34979 1263.69231 -1.64 51.13 4245 4245 MS2 17/20 Linfeng_20130204_CTCF_10.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 353 2.62 0.00 1 15 15 2 541.80292 1082.59856 -0.74 38.71 3336 3336 MS2 15/16 Linfeng_20130201_rIgG_5.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 367 2.61 0.00 1 28 50 2 541.80426 1082.60124 1.74 39.63 2995 2995 MS2 15/16 Linfeng_20130204_CTCF_10.raw High AIGGGLSSVGGGSSTIKYTTTSSSSR Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 540 2.61 0.00 1 12 50 3 806.74066 2418.20743 -1.39 35.73 2729 2729 MS2 24/100 Linfeng_20130204_CTCF_2.raw High NKLEGLEDALQK Unambiguous 6 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 477 2.60 0.00 1 53 50 2 679.36981 1357.73235 0.08 39.29 3557 3557 MS2 18/22 Linfeng_20130201_rIgG_1.raw Medium SRAEAESWYQTKYEELQVTAGR Unambiguous 5 2 P02538;P48668 CID 1.0000 0.0000 1 1 449 2.59 0.00 2 13 42 4 651.32013 2602.25869 2.07 43.69 4000 4000 MS2 29/126 Linfeng_20130201_rIgG_9.raw High VRAEEREQIK Unambiguous 7 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 529 2.58 0.00 2 30 50 3 419.90186 1257.69101 -0.02 16.00 835 835 MS2 21/36 Linfeng_20130201_rIgG_5.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 356 2.58 0.00 1 19 47 2 541.80518 1082.60307 3.43 40.09 2869 2869 MS2 15/16 Linfeng_20130204_CTCF_6.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 536 2.55 0.00 2 18 50 3 436.88947 1308.65384 -0.35 20.77 1478 1478 MS2 18/36 Linfeng_20130201_rIgG_1.raw High LLKEYQELmNVK Unambiguous 6 3 P02538;P04259;P48668 M9(Oxidation) CID 1.0000 0.0000 1 1 454 2.55 0.00 1 3 50 3 508.61029 1523.81632 1.62 37.75 2618 2618 MS2 12/44 Linfeng_20130204_CTCF_6.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 325 2.54 0.00 1 26 41 2 541.80322 1082.59917 -0.18 38.91 3499 3499 MS2 15/16 Linfeng_20130201_rIgG_10.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 534 2.54 0.00 2 2 50 3 436.88959 1308.65421 -0.07 21.58 1010 1010 MS2 19/36 Linfeng_20130204_CTCF_6.raw High SLYGLGGSKR Unambiguous 6 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 375 2.52 0.00 1 23 50 2 519.29010 1037.57292 -0.90 28.53 2249 2249 MS2 14/18 Linfeng_20130201_rIgG_5.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 527 2.52 0.00 2 41 50 3 436.88953 1308.65403 -0.21 19.76 1340 1340 MS2 15/36 Linfeng_20130201_rIgG_2.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 460 2.52 0.00 0 20 50 2 554.27435 1107.54143 -1.37 25.94 2145 2145 MS2 14/16 Linfeng_20130201_rIgG_3.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 585 2.51 0.00 0 22 43 2 602.32166 1203.63603 -0.69 42.15 3266 3266 MS2 16/18 Linfeng_20130204_CTCF_10.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 676 2.51 0.00 0 26 19 2 602.32172 1203.63616 -0.59 41.46 3752 3752 MS2 17/18 Linfeng_20130201_rIgG_4.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 325 2.49 0.00 1 33 50 2 541.80322 1082.59917 -0.18 39.27 2988 2988 MS2 15/16 Linfeng_20130204_CTCF_8.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 458 2.48 0.00 0 0 50 2 554.27472 1107.54216 -0.71 25.66 1686 1686 MS2 14/16 Linfeng_20130204_CTCF_1.raw High RGFSANSAR Unambiguous 4 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 366 2.47 0.00 1 21 50 2 483.24884 965.49040 -0.83 16.88 967 967 MS2 10/16 Linfeng_20130201_rIgG_6.raw Medium NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 528 2.47 0.00 2 54 50 3 436.88983 1308.65494 0.49 20.07 1370 1370 MS2 19/36 Linfeng_20130201_rIgG_4.raw High ISIGGGScAISGGYGSR Unambiguous 6 3 P02538;P04259;P48668 C8(Carbamidomethyl) CID 1.0000 0.0000 1 1 397 2.44 0.00 0 0 50 2 799.88300 1598.75871 -0.31 36.86 2841 2841 MS2 12/32 Linfeng_20130204_CTCF_2.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 605 2.44 0.00 0 33 50 2 602.32281 1203.63835 1.24 41.68 3039 3039 MS2 16/18 Linfeng_20130204_CTCF_3.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 499 2.43 0.00 0 0 50 2 554.27533 1107.54338 0.39 25.75 2120 2120 MS2 14/16 Linfeng_20130201_rIgG_1.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 674 2.43 0.00 0 30 50 2 602.32196 1203.63664 -0.18 41.37 3755 3755 MS2 16/18 Linfeng_20130201_rIgG_10.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 600 2.42 0.00 0 35 50 2 602.32300 1203.63872 1.54 42.11 3080 3080 MS2 14/18 Linfeng_20130204_CTCF_4.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 524 2.41 0.00 2 4 50 2 654.82965 1308.65203 -1.74 20.78 1491 1491 MS2 14/18 Linfeng_20130201_rIgG_10.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 506 2.39 0.00 0 9 50 2 554.27521 1107.54314 0.17 25.40 1569 1569 MS2 13/16 Linfeng_20130204_CTCF_7.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 309 2.37 0.00 1 17 50 2 541.80347 1082.59966 0.27 39.60 3561 3561 MS2 12/16 Linfeng_20130201_rIgG_2.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 400 2.36 0.00 0 24 50 2 632.34979 1263.69231 -1.64 57.77 5133 5133 MS2 15/20 Linfeng_20130204_CTCF_1.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 437 2.36 0.00 0 0 50 2 554.27509 1107.54289 -0.05 25.62 1681 1681 MS2 13/16 Linfeng_20130204_CTCF_1.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 367 2.36 0.00 1 47 29 2 541.80359 1082.59990 0.50 39.12 3388 3388 MS2 13/16 Linfeng_20130201_rIgG_5.raw High RGFSANSAR Unambiguous 4 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 373 2.35 0.00 1 8 50 2 483.24847 965.48967 -1.58 16.85 953 953 MS2 13/16 Linfeng_20130201_rIgG_9.raw Medium NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 528 2.34 0.00 2 6 50 3 436.88968 1308.65448 0.14 21.24 1550 1550 MS2 17/36 Linfeng_20130201_rIgG_8.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 344 2.34 0.00 1 29 50 2 541.80499 1082.60271 3.09 39.44 2810 2810 MS2 14/16 Linfeng_20130204_CTCF_3.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 367 2.33 0.00 1 53 50 2 541.80389 1082.60051 1.06 39.10 3561 3561 MS2 14/16 Linfeng_20130201_rIgG_6.raw Medium NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 528 2.32 0.00 2 58 50 3 436.88989 1308.65512 0.63 20.24 1360 1360 MS2 16/36 Linfeng_20130201_rIgG_5.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 491 2.32 0.00 0 33 50 2 554.27655 1107.54582 2.59 25.94 2205 2205 MS2 14/16 Linfeng_20130201_rIgG_7.raw Medium NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 560 2.31 0.00 2 40 50 3 436.89014 1308.65586 1.19 20.76 1421 1421 MS2 18/36 Linfeng_20130201_rIgG_5.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 461 2.27 0.00 0 29 50 2 554.27411 1107.54094 -1.81 26.16 2014 2014 MS2 14/16 Linfeng_20130201_rIgG_5.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 493 2.27 0.00 0 11 50 2 554.27539 1107.54350 0.50 25.99 1456 1456 MS2 12/16 Linfeng_20130204_CTCF_6.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 513 2.27 0.00 2 11 50 2 654.83185 1308.65642 1.62 21.17 967 967 MS2 14/18 Linfeng_20130204_CTCF_6.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 354 2.27 0.00 1 19 50 2 541.80298 1082.59868 -0.63 39.96 3606 3606 MS2 12/16 Linfeng_20130201_rIgG_3.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 674 2.26 0.00 0 15 49 2 602.32257 1203.63786 0.83 41.40 3307 3307 MS2 16/18 Linfeng_20130204_CTCF_2.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 683 2.26 0.00 0 25 35 2 602.32245 1203.63762 0.63 42.03 3915 3915 MS2 16/18 Linfeng_20130201_rIgG_7.raw Medium DVDAAYMNKVELQAK Unambiguous 8 4 P02538;P04259;P48668;H9KV51 CID 1.0000 0.0000 1 1 502 2.26 0.00 1 16 50 3 565.61823 1694.84012 -1.04 38.60 3509 3509 MS2 19/56 Linfeng_20130201_rIgG_6.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 672 2.26 0.00 0 31 50 2 602.32251 1203.63774 0.73 41.60 3817 3817 MS2 17/18 Linfeng_20130201_rIgG_6.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 455 2.24 0.00 0 14 50 2 554.27466 1107.54204 -0.82 26.05 2187 2187 MS2 14/16 Linfeng_20130201_rIgG_6.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 506 2.24 0.00 2 0 50 2 654.83093 1308.65459 0.22 21.04 1536 1536 MS2 14/18 Linfeng_20130201_rIgG_6.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 447 2.23 0.00 0 20 50 2 554.27441 1107.54155 -1.26 25.86 2113 2113 MS2 13/16 Linfeng_20130201_rIgG_4.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 367 2.21 0.00 1 55 50 2 541.80396 1082.60063 1.18 38.89 3093 3093 MS2 13/16 Linfeng_20130204_CTCF_1.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 607 2.21 0.00 0 40 6 2 602.32104 1203.63481 -1.70 41.28 3657 3657 MS2 15/18 Linfeng_20130201_rIgG_5.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 622 2.20 0.00 0 27 50 2 602.32281 1203.63835 1.24 40.96 3701 3701 MS2 15/18 Linfeng_20130201_rIgG_2.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 659 2.20 0.00 0 20 50 2 602.32208 1203.63689 0.02 42.02 3297 3297 MS2 15/18 Linfeng_20130204_CTCF_9.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 474 2.18 0.00 0 14 50 2 554.27539 1107.54350 0.50 25.38 1372 1372 MS2 11/16 Linfeng_20130204_CTCF_3.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 453 2.18 0.00 0 22 50 2 554.27472 1107.54216 -0.71 25.97 2159 2159 MS2 14/16 Linfeng_20130201_rIgG_9.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 669 2.16 0.00 0 44 50 2 602.32190 1203.63652 -0.28 41.92 3060 3060 MS2 13/18 Linfeng_20130204_CTCF_4.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 469 2.15 0.00 0 0 50 2 554.27454 1107.54180 -1.04 26.11 2174 2174 MS2 13/16 Linfeng_20130201_rIgG_9.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 433 2.15 0.00 0 32 50 2 554.27448 1107.54167 -1.15 24.76 2004 2004 MS2 14/16 Linfeng_20130201_rIgG_1.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 577 2.10 0.00 0 41 50 2 602.32159 1203.63591 -0.79 41.18 3733 3733 MS2 16/18 Linfeng_20130201_rIgG_3.raw High TAAENEFVTLK Unambiguous 6 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 498 2.09 0.00 0 34 50 2 611.82025 1222.63323 1.45 38.81 2937 2937 MS2 14/20 Linfeng_20130204_CTCF_7.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 492 2.08 0.00 0 23 50 2 554.27539 1107.54350 0.50 24.94 1596 1596 MS2 12/16 Linfeng_20130204_CTCF_1.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 475 2.03 0.00 0 0 50 2 554.27478 1107.54228 -0.60 25.52 1671 1671 MS2 13/16 Linfeng_20130204_CTCF_1.raw High TAAENEFVTLK Unambiguous 6 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 536 2.01 0.00 0 32 50 2 611.81970 1222.63213 0.55 38.03 3422 3422 MS2 14/20 Linfeng_20130201_rIgG_1.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 682 2.01 0.00 0 27 50 2 602.32220 1203.63713 0.23 42.21 3841 3841 MS2 14/18 Linfeng_20130201_rIgG_3.raw P08779 "Keratin, type I cytoskeletal 16 OS=Homo sapiens GN=KRT16 PE=1 SV=4 - [K1C16_HUMAN]" 45.67 5 12 23 253 511.70 45.45 21 159 297.12 35.10 15 94 473 51.2 5.05 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High IIAATIENAQPILQIDNAR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 154 5.63 0.00 0 6 40 2 1032.57654 2064.14580 0.44 52.16 5024 5024 MS2 25/36 Linfeng_20130201_rIgG_5.raw High IIAATIENAQPILQIDNAR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 190 5.49 0.00 0 9 17 3 688.72034 2064.14646 0.76 52.04 5012 5012 MS2 39/72 Linfeng_20130201_rIgG_5.raw High GQTGGDVNVEMDAAPGVDLSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 247 5.27 0.00 0 0 50 2 1044.48840 2087.96953 1.52 43.26 3207 3207 MS2 24/40 Linfeng_20130204_CTCF_6.raw High TEELNKEVASNSELVQSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 454 5.22 0.00 1 0 50 2 1060.53076 2120.05425 3.57 33.31 2171 2171 MS2 25/36 Linfeng_20130204_CTCF_6.raw High GQTGGDVNVEMDAAPGVDLSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 243 5.20 0.00 0 0 50 2 1044.48804 2087.96880 1.17 42.08 3855 3855 MS2 24/40 Linfeng_20130201_rIgG_1.raw High NKIIAATIENAQPILQIDNAR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 147 5.15 0.00 1 27 25 3 769.43427 2306.28824 2.37 51.38 4939 4939 MS2 32/80 Linfeng_20130201_rIgG_5.raw High GQTGGDVNVEMDAAPGVDLSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 258 5.10 0.00 0 0 50 2 1044.48853 2087.96977 1.64 42.16 3824 3824 MS2 25/40 Linfeng_20130201_rIgG_4.raw High TEELNKEVASNSELVQSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 398 5.05 0.00 1 0 50 2 1060.52759 2120.04790 0.58 33.63 2384 2384 MS2 24/36 Linfeng_20130204_CTCF_10.raw High GQTGGDVNVEMDAAPGVDLSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 242 5.03 0.00 0 0 15 2 1044.48889 2087.97051 1.99 42.23 3099 3099 MS2 25/40 Linfeng_20130204_CTCF_6.raw High IIAATIENAQPILQIDNAR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 192 4.98 0.00 0 0 50 3 688.72046 2064.14682 0.94 52.24 4968 4968 MS2 35/72 Linfeng_20130201_rIgG_4.raw High GQTGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P08779 M11(Oxidation) CID 1.0000 0.0000 1 1 222 4.92 0.00 0 0 3 2 1052.48584 2103.96440 1.49 36.89 3119 3119 MS2 25/40 Linfeng_20130201_rIgG_5.raw High TEELNKEVASNSELVQSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 427 4.88 0.00 1 0 50 2 1060.52844 2120.04961 1.39 33.05 2697 2697 MS2 25/36 Linfeng_20130201_rIgG_5.raw High GQTGGDVNVEMDAAPGVDLSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 229 4.86 0.00 0 0 50 2 1044.48767 2087.96807 0.82 42.22 3848 3848 MS2 24/40 Linfeng_20130201_rIgG_9.raw High TEELNKEVASNSELVQSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 389 4.82 0.00 1 0 50 2 1060.52612 2120.04497 -0.80 33.19 2934 2934 MS2 26/36 Linfeng_20130201_rIgG_9.raw High GQTGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P08779 M11(Oxidation) CID 1.0000 0.0000 1 1 200 4.78 0.00 0 0 50 2 1052.48315 2103.95903 -1.06 37.14 3317 3317 MS2 23/40 Linfeng_20130201_rIgG_10.raw High TEELNKEVASNSELVQSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 387 4.75 0.00 1 0 50 2 1060.52637 2120.04546 -0.57 33.29 2978 2978 MS2 25/36 Linfeng_20130201_rIgG_6.raw High GQTGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P08779 M11(Oxidation) CID 1.0000 0.0000 1 1 239 4.71 0.00 0 0 28 2 1052.48669 2103.96611 2.30 37.07 2549 2549 MS2 24/40 Linfeng_20130204_CTCF_6.raw High GQTGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P08779 M11(Oxidation) CID 1.0000 0.0000 1 1 205 4.65 0.00 0 0 50 2 1052.48376 2103.96025 -0.48 37.07 3354 3354 MS2 24/40 Linfeng_20130201_rIgG_6.raw High IIAATIENAQPILQIDNAR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 194 4.64 0.00 0 13 38 3 688.71991 2064.14518 0.14 52.04 5029 5029 MS2 37/72 Linfeng_20130201_rIgG_1.raw High GQTGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P08779 M11(Oxidation) CID 1.0000 0.0000 1 1 206 4.63 0.00 0 4 50 2 1052.48413 2103.96099 -0.13 37.03 2858 2858 MS2 23/40 Linfeng_20130204_CTCF_2.raw High GQTGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P08779 M11(Oxidation) CID 1.0000 0.0000 1 1 184 4.49 0.00 0 0 50 2 1052.48291 2103.95854 -1.29 37.06 3308 3308 MS2 26/40 Linfeng_20130201_rIgG_3.raw High GQTGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P08779 M11(Oxidation) CID 1.0000 0.0000 1 1 208 4.47 0.00 0 0 50 2 1052.48450 2103.96172 0.21 36.89 3284 3284 MS2 25/40 Linfeng_20130201_rIgG_2.raw High TEELNKEVASNSELVQSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 446 4.38 0.00 1 0 50 2 1060.52942 2120.05156 2.31 33.30 2932 2932 MS2 20/36 Linfeng_20130201_rIgG_3.raw High ILNEMRDQYEQMAEK Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 340 4.35 0.00 1 0 50 2 949.44873 1897.89018 6.23 39.52 2807 2807 MS2 21/28 Linfeng_20130204_CTCF_6.raw High GQTGGDVNVEMDAAPGVDLSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 252 4.31 0.00 0 5 50 2 1044.48901 2087.97075 2.11 42.38 3309 3309 MS2 24/40 Linfeng_20130204_CTCF_7.raw High TEELNKEVASNSELVQSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 381 4.29 0.00 1 0 50 2 1060.52576 2120.04424 -1.15 33.40 2500 2500 MS2 22/36 Linfeng_20130204_CTCF_2.raw High TEELNKEVASNSELVQSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 491 4.29 0.00 1 30 50 3 707.35382 2120.04691 0.11 32.90 2682 2682 MS2 30/72 Linfeng_20130201_rIgG_5.raw High GQTGGDVNVEMDAAPGVDLSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 232 4.24 0.00 0 0 50 2 1044.48743 2087.96758 0.59 42.21 3880 3880 MS2 23/40 Linfeng_20130201_rIgG_6.raw High LLEGEDAHLSSQQASGQSYSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 353 4.22 0.00 0 4 50 3 784.03510 2350.09073 0.03 30.90 2483 2483 MS2 29/84 Linfeng_20130201_rIgG_5.raw High GQTGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P08779 M11(Oxidation) CID 1.0000 0.0000 1 1 234 4.16 0.00 0 0 50 2 1052.48608 2103.96489 1.72 36.83 3301 3301 MS2 25/40 Linfeng_20130201_rIgG_1.raw High GQTGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P08779 M11(Oxidation) CID 1.0000 0.0000 1 1 202 4.14 0.00 0 0 50 2 1052.48376 2103.96025 -0.48 37.05 3318 3318 MS2 23/40 Linfeng_20130201_rIgG_9.raw High GQTGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P08779 M11(Oxidation) CID 1.0000 0.0000 1 1 252 4.14 0.00 0 3 14 3 701.99146 2103.95981 -0.69 36.80 3109 3109 MS2 32/80 Linfeng_20130201_rIgG_5.raw High TEELNKEVASNSELVQSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 490 4.11 0.00 1 44 50 3 707.35345 2120.04581 -0.41 33.05 2891 2891 MS2 29/72 Linfeng_20130201_rIgG_4.raw High GQTGGDVNVEMDAAPGVDLSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 260 4.08 0.00 0 14 50 2 1044.48779 2087.96831 0.94 42.18 3837 3837 MS2 25/40 Linfeng_20130201_rIgG_3.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 457 4.08 0.00 0 0 6 2 651.33459 1301.66191 2.69 34.34 2274 2274 MS2 19/22 Linfeng_20130204_CTCF_6.raw High TEELNKEVASNSELVQSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 474 4.03 0.00 1 5 50 3 707.35327 2120.04526 -0.67 33.02 2918 2918 MS2 30/72 Linfeng_20130201_rIgG_9.raw High GQTGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P08779 M11(Oxidation) CID 1.0000 0.0000 1 1 215 3.99 0.00 0 0 50 2 1052.48425 2103.96123 -0.02 37.03 2905 2905 MS2 20/40 Linfeng_20130204_CTCF_1.raw High GQTGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P08779 M11(Oxidation) CID 1.0000 0.0000 1 1 224 3.99 0.00 0 0 50 2 1052.48657 2103.96587 2.19 37.01 3287 3287 MS2 24/40 Linfeng_20130201_rIgG_4.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 492 3.94 0.00 1 22 50 2 690.36725 1379.72722 -0.42 35.70 2726 2726 MS2 17/20 Linfeng_20130204_CTCF_2.raw High GQTGGDVNVEMDAAPGVDLSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 256 3.94 0.00 0 0 50 2 1044.48718 2087.96709 0.35 42.09 3816 3816 MS2 24/40 Linfeng_20130201_rIgG_2.raw High TEELNKEVASNSELVQSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 493 3.89 0.00 1 5 50 3 707.35455 2120.04911 1.15 33.29 2367 2367 MS2 26/72 Linfeng_20130204_CTCF_8.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 520 3.89 0.00 1 18 50 2 690.36694 1379.72661 -0.86 36.41 2664 2664 MS2 17/20 Linfeng_20130204_CTCF_10.raw High GQTGGDVNVEMDAAPGVDLSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 238 3.88 0.00 0 0 50 2 1044.48767 2087.96807 0.82 42.43 3412 3412 MS2 19/40 Linfeng_20130204_CTCF_2.raw High TEELNKEVASNSELVQSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 525 3.87 0.00 1 2 50 3 707.35657 2120.05515 4.00 33.42 2403 2403 MS2 22/72 Linfeng_20130204_CTCF_7.raw High TEELNKEVASNSELVQSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 468 3.81 0.00 1 15 50 3 707.35413 2120.04782 0.54 33.05 2908 2908 MS2 34/72 Linfeng_20130201_rIgG_3.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 525 3.76 0.00 1 11 50 2 690.36841 1379.72954 1.26 36.24 2679 2679 MS2 17/20 Linfeng_20130204_CTCF_7.raw High VTmQNLNDRLASYLDKVR Unambiguous 3 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 493 3.75 0.00 2 19 7 3 718.04352 2152.11600 -0.93 47.44 4430 4430 MS2 24/68 Linfeng_20130201_rIgG_5.raw High ILNEMRDQYEQmAEK Unambiguous 1 1 P08779 M12(Oxidation) CID 1.0000 0.0000 1 1 223 3.74 0.00 1 3 50 3 638.62878 1913.87180 -0.77 31.98 2849 2849 MS2 19/56 Linfeng_20130201_rIgG_6.raw High LLEGEDAHLSSQQASGQSYSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 356 3.73 0.00 0 8 50 3 784.03564 2350.09238 0.74 31.29 2520 2520 MS2 32/84 Linfeng_20130201_rIgG_5.raw High ILNEMRDQYEQmAEK Unambiguous 1 1 P08779 M12(Oxidation) CID 1.0000 0.0000 1 1 227 3.72 0.00 1 0 50 3 638.62878 1913.87180 -0.77 31.79 2783 2783 MS2 24/56 Linfeng_20130201_rIgG_3.raw High GQTGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P08779 M11(Oxidation) CID 1.0000 0.0000 1 1 254 3.72 0.00 0 0 50 3 701.99200 2103.96146 0.09 37.09 3311 3311 MS2 29/80 Linfeng_20130201_rIgG_3.raw High TEELNKEVASNSELVQSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 473 3.71 0.00 1 10 50 3 707.35419 2120.04801 0.63 32.74 2893 2893 MS2 27/72 Linfeng_20130201_rIgG_1.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 479 3.68 0.00 1 0 50 2 690.36774 1379.72820 0.29 36.06 2468 2468 MS2 16/20 Linfeng_20130204_CTCF_3.raw High LLEGEDAHLSSQQASGQSYSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 355 3.67 0.00 0 0 50 3 784.03558 2350.09220 0.66 29.90 2384 2384 MS2 26/84 Linfeng_20130201_rIgG_5.raw High GQTGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P08779 M11(Oxidation) CID 1.0000 0.0000 1 1 219 3.64 0.00 0 0 50 2 1052.48462 2103.96196 0.33 37.51 2776 2776 MS2 20/40 Linfeng_20130204_CTCF_10.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 471 3.63 0.00 0 12 20 2 651.33319 1301.65911 0.53 33.90 2791 2791 MS2 19/22 Linfeng_20130201_rIgG_5.raw High TRLEQEIATYRR Unambiguous 5 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 452 3.62 0.00 2 8 50 3 512.61389 1535.82712 -1.17 32.08 2811 2811 MS2 19/44 Linfeng_20130201_rIgG_3.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 469 3.61 0.00 0 37 50 2 651.33240 1301.65752 -0.69 34.10 2568 2568 MS2 19/22 Linfeng_20130204_CTCF_2.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 517 3.60 0.00 1 7 50 2 690.36871 1379.73015 1.70 36.23 2702 2702 MS2 16/20 Linfeng_20130204_CTCF_9.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 477 3.57 0.00 1 12 50 2 690.36737 1379.72746 -0.24 35.61 3146 3146 MS2 17/20 Linfeng_20130201_rIgG_4.raw High GQTGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P08779 M11(Oxidation) CID 1.0000 0.0000 1 1 269 3.56 0.00 0 3 29 3 701.99268 2103.96347 1.05 37.08 2550 2550 MS2 24/80 Linfeng_20130204_CTCF_6.raw High RVLDELTLAR Unambiguous 9 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 409 3.56 0.00 1 47 50 2 593.35095 1185.69463 -0.37 40.44 2906 2906 MS2 16/18 Linfeng_20130204_CTCF_6.raw High ILNEMRDQYEQMAEK Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 278 3.55 0.00 1 0 50 2 949.44299 1897.87871 0.19 39.57 3574 3574 MS2 19/28 Linfeng_20130201_rIgG_9.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 520 3.55 0.00 1 10 50 2 690.36847 1379.72966 1.35 35.81 3148 3148 MS2 17/20 Linfeng_20130201_rIgG_8.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 492 3.54 0.00 0 13 50 2 651.33276 1301.65825 -0.12 34.12 3014 3014 MS2 19/22 Linfeng_20130201_rIgG_3.raw High TEELNKEVASNSELVQSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 496 3.51 0.00 1 23 50 3 707.35358 2120.04618 -0.23 32.90 2897 2897 MS2 26/72 Linfeng_20130201_rIgG_10.raw High GQTGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P08779 M11(Oxidation) CID 1.0000 0.0000 1 1 231 3.50 0.00 0 0 50 2 1052.48499 2103.96269 0.68 37.19 3416 3416 MS2 19/40 Linfeng_20130201_rIgG_7.raw High GQTGGDVNVEMDAAPGVDLSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 325 3.50 0.00 0 2 25 3 696.66162 2087.97031 1.90 42.24 3100 3100 MS2 24/80 Linfeng_20130204_CTCF_6.raw High TEELNKEVASNSELVQSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 491 3.49 0.00 1 35 50 3 707.35388 2120.04709 0.20 33.08 2958 2958 MS2 28/72 Linfeng_20130201_rIgG_6.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 504 3.48 0.00 1 4 50 2 690.36700 1379.72673 -0.77 35.58 3161 3161 MS2 16/20 Linfeng_20130201_rIgG_10.raw High ILNEMRDQYEQmAEK Unambiguous 1 1 P08779 M12(Oxidation) CID 1.0000 0.0000 1 1 223 3.48 0.00 1 4 50 2 957.44098 1913.87468 0.74 32.31 2069 2069 MS2 19/28 Linfeng_20130204_CTCF_6.raw High ILNEMRDQYEQmAEK Unambiguous 1 1 P08779 M12(Oxidation) CID 1.0000 0.0000 1 1 253 3.47 0.00 1 5 50 3 638.63031 1913.87638 1.63 32.23 2061 2061 MS2 23/56 Linfeng_20130204_CTCF_6.raw High TEELNKEVASNSELVQSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 472 3.46 0.00 1 0 50 3 707.35327 2120.04526 -0.67 33.09 2471 2471 MS2 28/72 Linfeng_20130204_CTCF_2.raw High LLEGEDAHLSSQQASGQSYSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 356 3.44 0.00 0 0 50 3 784.03516 2350.09092 0.11 30.29 2648 2648 MS2 24/84 Linfeng_20130201_rIgG_1.raw High TEELNKEVASNSELVQSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 487 3.43 0.00 1 13 21 3 707.35339 2120.04563 -0.49 33.15 2153 2153 MS2 26/72 Linfeng_20130204_CTCF_6.raw High ILNEMRDQYEQmAEK Unambiguous 1 1 P08779 M12(Oxidation) CID 1.0000 0.0000 1 1 225 3.41 0.00 1 2 19 3 638.62866 1913.87143 -0.96 31.88 2579 2579 MS2 25/56 Linfeng_20130201_rIgG_5.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 449 3.40 0.00 1 18 50 2 690.36963 1379.73198 3.03 36.10 2451 2451 MS2 17/20 Linfeng_20130204_CTCF_6.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 464 3.39 0.00 0 11 50 2 651.33368 1301.66008 1.28 34.17 2496 2496 MS2 18/22 Linfeng_20130204_CTCF_9.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 490 3.39 0.00 1 12 50 2 690.36731 1379.72734 -0.33 35.27 2728 2728 MS2 17/20 Linfeng_20130204_CTCF_1.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 451 3.39 0.00 0 12 50 2 651.33600 1301.66472 4.85 34.29 2467 2467 MS2 18/22 Linfeng_20130204_CTCF_8.raw High LLEGEDAHLSSQQASGQSYSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 355 3.39 0.00 0 8 50 3 784.03558 2350.09220 0.66 30.42 2634 2634 MS2 22/84 Linfeng_20130201_rIgG_4.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 498 3.39 0.00 0 9 50 2 651.33258 1301.65788 -0.40 33.95 3001 3001 MS2 19/22 Linfeng_20130201_rIgG_10.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 458 3.37 0.00 0 17 50 2 651.33246 1301.65764 -0.59 33.90 2593 2593 MS2 19/22 Linfeng_20130204_CTCF_1.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 532 3.37 0.00 1 8 50 2 690.36853 1379.72978 1.44 36.19 2476 2476 MS2 16/20 Linfeng_20130204_CTCF_4.raw High GQTGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P08779 M11(Oxidation) CID 1.0000 0.0000 1 1 254 3.37 0.00 0 32 50 2 1052.48682 2103.96636 2.42 37.22 2584 2584 MS2 18/40 Linfeng_20130204_CTCF_3.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 561 3.35 0.00 0 14 50 2 515.30219 1029.59709 3.06 42.70 3141 3141 MS2 15/16 Linfeng_20130204_CTCF_4.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 452 3.34 0.00 1 30 46 2 690.36908 1379.73088 2.23 35.54 2970 2970 MS2 17/20 Linfeng_20130201_rIgG_5.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 398 3.34 0.00 0 34 50 2 515.30035 1029.59343 -0.50 42.30 3399 3399 MS2 15/16 Linfeng_20130204_CTCF_2.raw High APSTYGGGLSVSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 366 3.34 0.00 0 0 47 2 669.83588 1338.66448 -0.30 30.88 2480 2480 MS2 21/26 Linfeng_20130201_rIgG_5.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 472 3.34 0.00 1 7 50 2 690.36823 1379.72917 0.99 35.07 3102 3102 MS2 17/20 Linfeng_20130201_rIgG_2.raw High TEELNKEVASNSELVQSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 491 3.33 0.00 1 41 50 3 707.35388 2120.04709 0.20 33.32 2412 2412 MS2 26/72 Linfeng_20130204_CTCF_9.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 461 3.31 0.00 1 0 50 2 690.36749 1379.72771 -0.07 34.84 3100 3100 MS2 17/20 Linfeng_20130201_rIgG_1.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 453 3.30 0.00 0 10 50 2 651.33380 1301.66033 1.47 34.20 2479 2479 MS2 19/22 Linfeng_20130204_CTCF_7.raw High ILNEMRDQYEQmAEK Unambiguous 1 1 P08779 M12(Oxidation) CID 1.0000 0.0000 1 1 204 3.30 0.00 1 11 50 2 957.43677 1913.86626 -3.66 32.14 2865 2865 MS2 15/28 Linfeng_20130201_rIgG_6.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 482 3.29 0.00 0 24 50 2 651.33295 1301.65862 0.16 34.05 3104 3104 MS2 17/22 Linfeng_20130201_rIgG_7.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 533 3.29 0.00 1 21 36 3 460.58038 1379.72660 -0.87 35.72 3157 3157 MS2 20/40 Linfeng_20130201_rIgG_4.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 475 3.28 0.00 0 16 43 2 651.33307 1301.65886 0.35 34.07 2992 2992 MS2 19/22 Linfeng_20130201_rIgG_4.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 377 3.28 0.00 0 8 20 2 515.30042 1029.59355 -0.38 41.88 3730 3730 MS2 15/16 Linfeng_20130201_rIgG_5.raw High APSTYGGGLSVSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 389 3.27 0.00 0 20 50 2 669.83691 1338.66655 1.26 31.19 1959 1959 MS2 20/26 Linfeng_20130204_CTCF_6.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 392 3.27 0.00 0 7 28 2 515.30048 1029.59368 -0.26 42.20 3839 3839 MS2 15/16 Linfeng_20130201_rIgG_3.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 303 3.26 0.00 0 7 35 2 515.30078 1029.59429 0.33 42.20 3828 3828 MS2 15/16 Linfeng_20130201_rIgG_4.raw High QRPSEIKDYSPYFK Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 486 3.26 0.00 2 31 50 4 440.22675 1757.88515 -0.35 35.08 2918 2918 MS2 36/78 Linfeng_20130201_rIgG_5.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 484 3.25 0.00 0 11 50 2 651.33405 1301.66081 1.85 34.99 2340 2340 MS2 19/22 Linfeng_20130204_CTCF_6.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 304 3.23 0.00 0 13 38 2 515.30090 1029.59453 0.57 41.81 3827 3827 MS2 15/16 Linfeng_20130201_rIgG_1.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 465 3.22 0.00 1 23 50 3 460.57971 1379.72458 -2.33 35.86 3189 3189 MS2 21/40 Linfeng_20130201_rIgG_10.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 310 3.20 0.00 1 1 50 2 532.80969 1064.61211 2.06 32.85 2123 2123 MS2 15/16 Linfeng_20130204_CTCF_6.raw High ILNEMRDQYEQmAEK Unambiguous 1 1 P08779 M12(Oxidation) CID 1.0000 0.0000 1 1 198 3.20 0.00 1 7 50 2 957.43762 1913.86797 -2.77 32.07 2824 2824 MS2 15/28 Linfeng_20130201_rIgG_9.raw High ILNEMRDQYEQmAEK Unambiguous 1 1 P08779 M12(Oxidation) CID 1.0000 0.0000 1 1 220 3.19 0.00 1 6 50 3 638.62885 1913.87198 -0.67 31.89 2807 2807 MS2 21/56 Linfeng_20130201_rIgG_9.raw High TEELNKEVASNSELVQSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 465 3.19 0.00 1 9 50 3 707.35284 2120.04398 -1.27 33.40 2361 2361 MS2 20/72 Linfeng_20130204_CTCF_10.raw High ILNEMRDQYEQMAEK Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 274 3.19 0.00 1 30 35 3 633.29761 1897.87827 -0.04 39.39 3556 3556 MS2 18/56 Linfeng_20130201_rIgG_9.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 402 3.17 0.00 0 31 50 2 515.30060 1029.59392 -0.02 42.64 3137 3137 MS2 15/16 Linfeng_20130204_CTCF_3.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 513 3.17 0.00 1 31 50 2 690.36664 1379.72600 -1.31 36.13 3230 3230 MS2 17/20 Linfeng_20130201_rIgG_1.raw High TEELNKEVASNSELVQSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 475 3.16 0.00 1 29 50 3 707.35327 2120.04526 -0.67 33.12 3013 3013 MS2 26/72 Linfeng_20130201_rIgG_7.raw High QRPSEIKDYSPYFK Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 527 3.16 0.00 2 39 50 3 586.63391 1757.88718 0.81 35.02 2912 2912 MS2 24/52 Linfeng_20130201_rIgG_5.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 493 3.15 0.00 0 7 50 2 651.33295 1301.65862 0.16 34.09 3057 3057 MS2 17/22 Linfeng_20130201_rIgG_6.raw High TRLEQEIATYRR Unambiguous 5 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 454 3.15 0.00 2 2 50 3 512.61371 1535.82657 -1.53 32.19 2383 2383 MS2 16/44 Linfeng_20130204_CTCF_2.raw High QRPSEIKDYSPYFK Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 527 3.13 0.00 2 6 50 3 586.63184 1757.88095 -2.73 35.95 2618 2618 MS2 20/52 Linfeng_20130204_CTCF_10.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 553 3.13 0.00 0 9 50 2 651.33777 1301.66826 7.57 33.26 2165 2165 MS2 19/22 Linfeng_20130204_CTCF_6.raw High APSTYGGGLSVSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 370 3.12 0.00 0 11 50 2 669.83588 1338.66448 -0.30 29.99 2393 2393 MS2 21/26 Linfeng_20130201_rIgG_5.raw High TEELNKEVASNSELVQSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 498 3.11 0.00 1 77 50 3 707.35364 2120.04636 -0.15 32.77 2876 2876 MS2 22/72 Linfeng_20130201_rIgG_2.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 391 3.11 0.00 0 8 25 2 515.30023 1029.59319 -0.73 43.22 3897 3897 MS2 15/16 Linfeng_20130201_rIgG_5.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 480 3.11 0.00 0 18 50 2 651.33289 1301.65849 0.06 33.89 2986 2986 MS2 18/22 Linfeng_20130201_rIgG_2.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 464 3.10 0.00 0 12 50 2 651.33252 1301.65776 -0.50 34.02 3017 3017 MS2 19/22 Linfeng_20130201_rIgG_9.raw High LLEGEDAHLSSQQASGQSYSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 352 3.10 0.00 0 38 50 3 784.03540 2350.09165 0.42 30.88 1928 1928 MS2 25/84 Linfeng_20130204_CTCF_6.raw High ILNEMRDQYEQMAEK Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 317 3.10 0.00 1 6 46 3 633.30042 1897.88669 4.39 39.47 2802 2802 MS2 22/56 Linfeng_20130204_CTCF_6.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 398 3.09 0.00 0 24 40 2 515.30048 1029.59368 -0.26 42.40 3884 3884 MS2 15/16 Linfeng_20130201_rIgG_8.raw High GQTGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P08779 M11(Oxidation) CID 1.0000 0.0000 1 1 242 3.09 0.00 0 0 50 3 701.99084 2103.95798 -1.56 37.03 3290 3290 MS2 25/80 Linfeng_20130201_rIgG_4.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 481 3.09 0.00 1 0 50 2 690.36761 1379.72795 0.11 35.39 3140 3140 MS2 17/20 Linfeng_20130201_rIgG_3.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 484 3.09 0.00 1 23 50 2 690.36737 1379.72746 -0.24 35.83 3280 3280 MS2 17/20 Linfeng_20130201_rIgG_7.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 506 3.08 0.00 1 13 50 2 690.36700 1379.72673 -0.77 35.79 3193 3193 MS2 17/20 Linfeng_20130201_rIgG_9.raw High ILNEmRDQYEQmAEK Unambiguous 1 1 P08779 M5(Oxidation); M12(Oxidation) CID 1.0000 0.0000 1 1 191 3.07 0.00 1 3 50 3 643.96075 1929.86771 -0.24 25.07 1903 1903 MS2 20/56 Linfeng_20130201_rIgG_5.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 516 3.04 0.00 1 20 50 2 690.36877 1379.73027 1.79 35.92 3238 3238 MS2 16/20 Linfeng_20130201_rIgG_6.raw High LLEGEDAHLSSQQASGQSYSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 357 3.02 0.00 0 11 50 3 784.03497 2350.09037 -0.12 30.24 1865 1865 MS2 26/84 Linfeng_20130204_CTCF_6.raw High TEELNKEVASNSELVQSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 461 3.00 0.00 1 29 50 3 707.35309 2120.04471 -0.92 33.23 2885 2885 MS2 22/72 Linfeng_20130201_rIgG_8.raw High VTmQNLNDRLASYLDKVR Unambiguous 3 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 473 2.99 0.00 2 24 29 3 718.04553 2152.12204 1.88 48.01 4559 4559 MS2 24/68 Linfeng_20130201_rIgG_7.raw Medium VTmQNLNDRLASYLDKVR Unambiguous 3 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 476 2.99 0.00 2 10 3 4 538.78491 2152.11782 -0.09 47.42 4427 4427 MS2 30/102 Linfeng_20130201_rIgG_5.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 395 2.99 0.00 0 26 50 2 515.30060 1029.59392 -0.02 42.19 3841 3841 MS2 15/16 Linfeng_20130201_rIgG_10.raw High LLEGEDAHLSSQQASGQSYSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 356 2.97 0.00 0 17 50 3 784.03510 2350.09073 0.03 30.52 2672 2672 MS2 19/84 Linfeng_20130201_rIgG_9.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 244 2.97 0.00 1 11 50 2 532.80872 1064.61016 0.23 32.63 2965 2965 MS2 14/16 Linfeng_20130201_rIgG_7.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 513 2.96 0.00 0 14 50 2 651.33429 1301.66130 2.22 36.15 2456 2456 MS2 18/22 Linfeng_20130204_CTCF_6.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 528 2.96 0.00 1 21 31 3 460.58038 1379.72660 -0.87 35.68 3169 3169 MS2 21/40 Linfeng_20130201_rIgG_3.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 294 2.96 0.00 0 7 50 2 515.30078 1029.59429 0.33 42.68 3339 3339 MS2 15/16 Linfeng_20130204_CTCF_7.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 444 2.95 0.00 0 8 50 2 651.33173 1301.65618 -1.72 33.03 2921 2921 MS2 16/22 Linfeng_20130201_rIgG_1.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 525 2.94 0.00 1 32 50 3 460.58029 1379.72632 -1.07 36.08 3254 3254 MS2 19/40 Linfeng_20130201_rIgG_6.raw High LLEGEDAHLSSQQASGQSYSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 356 2.94 0.00 0 9 50 3 784.03534 2350.09146 0.35 30.48 2652 2652 MS2 25/84 Linfeng_20130201_rIgG_3.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 524 2.94 0.00 0 30 50 2 515.30115 1029.59502 1.05 43.00 3356 3356 MS2 15/16 Linfeng_20130204_CTCF_10.raw High TRLEQEIATYRR Unambiguous 5 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 466 2.93 0.00 2 7 50 3 512.61365 1535.82639 -1.65 32.40 2942 2942 MS2 17/44 Linfeng_20130201_rIgG_7.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 240 2.93 0.00 1 8 50 2 532.80853 1064.60979 -0.12 32.41 2844 2844 MS2 14/16 Linfeng_20130201_rIgG_3.raw Medium QRPSEIKDYSPYFK Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 506 2.92 0.00 2 16 50 4 440.22665 1757.88479 -0.55 35.65 3211 3211 MS2 26/78 Linfeng_20130201_rIgG_6.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 551 2.92 0.00 0 5 50 2 515.30115 1029.59502 1.05 42.36 3949 3949 MS2 15/16 Linfeng_20130201_rIgG_7.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 312 2.92 0.00 1 26 50 2 532.80811 1064.60893 -0.92 32.62 2913 2913 MS2 14/16 Linfeng_20130201_rIgG_6.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 501 2.91 0.00 0 20 50 2 651.33435 1301.66142 2.31 34.17 2980 2980 MS2 18/22 Linfeng_20130201_rIgG_8.raw High DAETWFLSK Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 294 2.91 0.00 0 4 50 2 548.77008 1096.53288 1.72 51.08 4036 4036 MS2 14/16 Linfeng_20130204_CTCF_6.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 411 2.91 0.00 0 19 50 2 515.29987 1029.59245 -1.44 42.31 3857 3857 MS2 15/16 Linfeng_20130201_rIgG_9.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 307 2.90 0.00 1 8 50 2 532.80908 1064.61089 0.92 32.38 2629 2629 MS2 15/16 Linfeng_20130201_rIgG_5.raw High ILNEMRDQYEQmAEK Unambiguous 1 1 P08779 M12(Oxidation) CID 1.0000 0.0000 1 1 218 2.89 0.00 1 0 50 2 957.44043 1913.87358 0.17 31.95 2586 2586 MS2 18/28 Linfeng_20130201_rIgG_5.raw High APSTYGGGLSVSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 384 2.88 0.00 0 14 50 2 669.83563 1338.66399 -0.66 31.15 2158 2158 MS2 17/26 Linfeng_20130204_CTCF_8.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 401 2.88 0.00 0 7 50 2 515.29980 1029.59233 -1.56 42.13 3429 3429 MS2 15/16 Linfeng_20130204_CTCF_1.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 299 2.88 0.00 0 4 32 2 515.30103 1029.59477 0.81 42.43 3121 3121 MS2 15/16 Linfeng_20130204_CTCF_6.raw High APSTYGGGLSVSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 377 2.87 0.00 0 12 50 2 669.83594 1338.66460 -0.20 31.25 2778 2778 MS2 17/26 Linfeng_20130201_rIgG_6.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 306 2.86 0.00 1 9 50 2 532.80939 1064.61150 1.49 31.79 2017 2017 MS2 14/16 Linfeng_20130204_CTCF_6.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 307 2.85 0.00 1 38 50 2 532.80811 1064.60893 -0.92 33.12 2333 2333 MS2 14/16 Linfeng_20130204_CTCF_10.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 392 2.84 0.00 0 11 50 2 515.30042 1029.59355 -0.38 42.31 3890 3890 MS2 15/16 Linfeng_20130201_rIgG_6.raw High GQTGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P08779 M11(Oxidation) CID 1.0000 0.0000 1 1 255 2.83 0.00 0 3 50 3 701.99146 2103.95981 -0.69 37.08 3355 3355 MS2 21/80 Linfeng_20130201_rIgG_6.raw High TEELNKEVASNSELVQSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 498 2.82 0.00 1 9 50 3 707.35364 2120.04636 -0.15 33.20 2188 2188 MS2 24/72 Linfeng_20130204_CTCF_3.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 303 2.82 0.00 1 21 50 2 532.80823 1064.60918 -0.69 32.70 2972 2972 MS2 13/16 Linfeng_20130201_rIgG_7.raw High ILNEMRDQYEQmAEK Unambiguous 1 1 P08779 M12(Oxidation) CID 1.0000 0.0000 1 1 231 2.82 0.00 1 16 50 3 638.62817 1913.86997 -1.72 31.86 2775 2775 MS2 17/56 Linfeng_20130201_rIgG_4.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 394 2.81 0.00 0 7 50 2 515.30054 1029.59380 -0.14 42.81 3378 3378 MS2 15/16 Linfeng_20130204_CTCF_9.raw High LLEGEDAHLSSQQASGQSYSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 351 2.81 0.00 0 21 50 3 784.03583 2350.09293 0.97 30.61 2715 2715 MS2 22/84 Linfeng_20130201_rIgG_6.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 396 2.76 0.00 0 22 50 2 515.30072 1029.59416 0.22 41.91 3798 3798 MS2 15/16 Linfeng_20130201_rIgG_2.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 464 2.76 0.00 0 12 50 2 651.33423 1301.66118 2.13 34.41 2462 2462 MS2 19/22 Linfeng_20130204_CTCF_10.raw High RLLEGEDAHLSSQQASGQSYSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 390 2.76 0.00 1 53 50 3 836.06989 2506.19510 1.33 29.12 2308 2308 MS2 23/88 Linfeng_20130201_rIgG_5.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 488 2.75 0.00 0 22 50 2 651.33313 1301.65898 0.44 32.78 2897 2897 MS2 17/22 Linfeng_20130201_rIgG_1.raw High LEQEIATYR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 450 2.75 0.00 0 9 50 2 561.79266 1122.57805 -0.85 30.76 2681 2681 MS2 14/16 Linfeng_20130201_rIgG_3.raw High GQTGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P08779 M11(Oxidation) CID 1.0000 0.0000 1 1 272 2.75 0.00 0 0 50 3 701.99341 2103.96567 2.09 36.88 3306 3306 MS2 27/80 Linfeng_20130201_rIgG_1.raw High DAETWFLSK Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 311 2.75 0.00 0 4 50 2 548.76868 1096.53008 -0.84 51.14 4356 4356 MS2 13/16 Linfeng_20130204_CTCF_2.raw High LLEGEDAHLSSQQASGQSYSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 343 2.74 0.00 0 13 50 3 784.03345 2350.08579 -2.07 30.55 2623 2623 MS2 22/84 Linfeng_20130201_rIgG_8.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 396 2.74 0.00 0 11 36 2 515.30023 1029.59319 -0.73 42.72 3372 3372 MS2 15/16 Linfeng_20130204_CTCF_8.raw High ILNEMRDQYEQmAEK Unambiguous 1 1 P08779 M12(Oxidation) CID 1.0000 0.0000 1 1 193 2.73 0.00 1 0 50 2 957.43945 1913.87163 -0.86 31.89 2792 2792 MS2 16/28 Linfeng_20130201_rIgG_3.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 484 2.72 0.00 0 35 50 2 651.33392 1301.66057 1.66 34.28 2288 2288 MS2 19/22 Linfeng_20130204_CTCF_4.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 236 2.70 0.00 1 29 50 2 532.80835 1064.60942 -0.46 32.37 2440 2440 MS2 12/16 Linfeng_20130204_CTCF_1.raw High GQTGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P08779 M11(Oxidation) CID 1.0000 0.0000 1 1 245 2.70 0.00 0 26 50 3 701.99048 2103.95688 -2.08 37.05 2860 2860 MS2 23/80 Linfeng_20130204_CTCF_2.raw High ILNEMRDQYEQMAEK Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 269 2.69 0.00 1 8 43 3 633.29724 1897.87717 -0.62 39.51 3112 3112 MS2 17/56 Linfeng_20130204_CTCF_2.raw Medium VTmQNLNDRLASYLDKVR Unambiguous 3 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 493 2.68 0.00 2 18 10 4 538.78448 2152.11611 -0.88 48.07 4566 4566 MS2 23/102 Linfeng_20130201_rIgG_7.raw High TKYEHELALR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 510 2.67 0.00 1 28 50 2 630.33990 1259.67253 -1.40 26.67 2065 2065 MS2 14/18 Linfeng_20130201_rIgG_5.raw High TRLEQEIATYRR Unambiguous 5 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 501 2.67 0.00 2 19 50 3 512.61462 1535.82932 0.26 31.67 2768 2768 MS2 18/44 Linfeng_20130201_rIgG_2.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 479 2.66 0.00 1 32 50 3 460.57983 1379.72495 -2.07 36.02 3216 3216 MS2 21/40 Linfeng_20130201_rIgG_9.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 318 2.64 0.00 1 8 50 2 532.80823 1064.60918 -0.69 32.58 2875 2875 MS2 14/16 Linfeng_20130201_rIgG_9.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 480 2.64 0.00 1 29 50 3 460.57990 1379.72513 -1.93 35.92 3289 3289 MS2 20/40 Linfeng_20130201_rIgG_7.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 394 2.63 0.00 0 13 50 2 515.30023 1029.59319 -0.73 43.10 3932 3932 MS2 15/16 Linfeng_20130201_rIgG_3.raw High TRLEQEIATYRR Unambiguous 5 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 501 2.63 0.00 2 13 50 3 512.61469 1535.82950 0.38 32.18 2826 2826 MS2 16/44 Linfeng_20130201_rIgG_10.raw High DAETWFLSK Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 302 2.62 0.00 0 2 5 2 548.76917 1096.53105 0.05 50.75 4859 4859 MS2 14/16 Linfeng_20130201_rIgG_5.raw High GQTGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P08779 M11(Oxidation) CID 1.0000 0.0000 1 1 247 2.60 0.00 0 3 50 3 701.99048 2103.95688 -2.08 37.18 3331 3331 MS2 22/80 Linfeng_20130201_rIgG_9.raw High QRPSEIKDYSPYFK Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 531 2.60 0.00 2 7 6 3 586.63379 1757.88681 0.60 35.76 2417 2417 MS2 17/52 Linfeng_20130204_CTCF_6.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 538 2.60 0.00 1 20 50 3 460.58154 1379.73008 1.65 36.11 2452 2452 MS2 16/40 Linfeng_20130204_CTCF_6.raw High APSTYGGGLSVSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 403 2.58 0.00 0 20 50 2 669.83521 1338.66313 -1.30 31.47 2167 2167 MS2 14/26 Linfeng_20130204_CTCF_10.raw High ILNEMRDQYEQmAEK Unambiguous 1 1 P08779 M12(Oxidation) CID 1.0000 0.0000 1 1 223 2.57 0.00 1 4 50 3 638.62885 1913.87198 -0.67 31.97 2361 2361 MS2 20/56 Linfeng_20130204_CTCF_2.raw High ILNEMRDQYEQmAEK Unambiguous 1 1 P08779 M12(Oxidation) CID 1.0000 0.0000 1 1 208 2.56 0.00 1 8 50 2 957.43799 1913.86870 -2.39 32.11 2375 2375 MS2 14/28 Linfeng_20130204_CTCF_2.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 313 2.55 0.00 1 20 50 2 532.80823 1064.60918 -0.69 32.90 2352 2352 MS2 13/16 Linfeng_20130204_CTCF_7.raw High VTmQNLNDR Unambiguous 4 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 379 2.54 0.00 0 21 50 2 553.76636 1106.52544 -0.45 17.17 998 998 MS2 13/16 Linfeng_20130201_rIgG_3.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 237 2.53 0.00 1 17 50 2 532.80847 1064.60967 -0.23 32.53 2861 2861 MS2 14/16 Linfeng_20130201_rIgG_10.raw High DAETWFLSK Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 299 2.53 0.00 0 15 19 2 548.76917 1096.53105 0.05 50.67 4876 4876 MS2 14/16 Linfeng_20130201_rIgG_1.raw High ILNEMRDQYEQmAEK Unambiguous 1 1 P08779 M12(Oxidation) CID 1.0000 0.0000 1 1 226 2.52 0.00 1 22 50 3 638.62860 1913.87125 -1.05 31.86 2795 2795 MS2 19/56 Linfeng_20130201_rIgG_10.raw High TEELNKEVASNSELVQSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 490 2.52 0.00 1 45 50 3 707.35345 2120.04581 -0.41 33.64 2444 2444 MS2 21/72 Linfeng_20130204_CTCF_9.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 308 2.51 0.00 1 14 50 2 532.80768 1064.60808 -1.72 30.94 2696 2696 MS2 14/16 Linfeng_20130201_rIgG_2.raw High ILNEMRDQYEQMAEK Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 275 2.51 0.00 1 11 50 3 633.29761 1897.87827 -0.04 40.58 2921 2921 MS2 19/56 Linfeng_20130204_CTCF_6.raw High VTmQNLNDR Unambiguous 4 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 380 2.50 0.00 0 31 50 2 553.76611 1106.52495 -0.89 17.24 1017 1017 MS2 15/16 Linfeng_20130201_rIgG_7.raw Medium ILNEmRDQYEQmAEK Unambiguous 1 1 P08779 M5(Oxidation); M12(Oxidation) CID 1.0000 0.0000 1 1 195 2.50 0.00 1 10 50 3 643.96155 1929.87009 0.99 24.20 1811 1811 MS2 19/56 Linfeng_20130201_rIgG_5.raw High DAETWFLSK Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 292 2.48 0.00 0 0 40 2 548.76892 1096.53057 -0.40 50.98 4836 4836 MS2 14/16 Linfeng_20130201_rIgG_4.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 302 2.47 0.00 1 9 50 2 532.80902 1064.61077 0.80 31.38 2529 2529 MS2 12/16 Linfeng_20130201_rIgG_5.raw High VTmQNLNDR Unambiguous 4 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 397 2.46 0.00 0 47 50 2 553.76642 1106.52556 -0.34 17.35 558 558 MS2 14/16 Linfeng_20130204_CTCF_8.raw High DAETWFLSK Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 279 2.46 0.00 0 3 39 2 548.76996 1096.53264 1.49 51.18 4903 4903 MS2 13/16 Linfeng_20130201_rIgG_6.raw Medium TRLEQEIATYRR Unambiguous 5 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 496 2.45 0.00 2 30 50 3 512.61414 1535.82785 -0.69 32.47 2898 2898 MS2 17/44 Linfeng_20130201_rIgG_6.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 507 2.45 0.00 0 30 50 2 651.33276 1301.65825 -0.12 33.63 2981 2981 MS2 18/22 Linfeng_20130201_rIgG_1.raw Medium TRLEQEIATYRR Unambiguous 5 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 497 2.45 0.00 2 23 50 3 512.61426 1535.82822 -0.46 33.04 2696 2696 MS2 21/44 Linfeng_20130201_rIgG_5.raw Medium ILNEmRDQYEQMAEK Unambiguous 1 1 P08779 M5(Oxidation) CID 1.0000 0.0000 1 1 268 2.43 0.00 1 30 50 3 638.63049 1913.87693 1.91 35.92 2433 2433 MS2 18/56 Linfeng_20130204_CTCF_6.raw Medium ILNEMRDQYEQmAEK Unambiguous 1 1 P08779 M12(Oxidation) CID 1.0000 0.0000 1 1 245 2.42 0.00 1 14 50 3 638.62946 1913.87381 0.29 32.47 2266 2266 MS2 14/56 Linfeng_20130204_CTCF_10.raw Medium TRLEQEIATYRR Unambiguous 5 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 497 2.40 0.00 2 30 50 3 512.61420 1535.82804 -0.58 32.17 2806 2806 MS2 17/44 Linfeng_20130201_rIgG_4.raw Medium TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 501 2.40 0.00 1 29 50 3 460.58060 1379.72724 -0.41 35.91 3159 3159 MS2 19/40 Linfeng_20130201_rIgG_8.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 237 2.39 0.00 1 12 50 2 532.80878 1064.61028 0.34 32.09 2810 2810 MS2 13/16 Linfeng_20130201_rIgG_2.raw Medium TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 495 2.39 0.00 1 62 39 3 460.58084 1379.72797 0.12 35.57 2973 2973 MS2 20/40 Linfeng_20130201_rIgG_5.raw Medium TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 533 2.38 0.00 1 27 32 3 460.58026 1379.72623 -1.14 34.95 3111 3111 MS2 19/40 Linfeng_20130201_rIgG_1.raw High VTmQNLNDR Unambiguous 4 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 386 2.38 0.00 0 23 50 2 553.76636 1106.52544 -0.45 17.72 1045 1045 MS2 13/16 Linfeng_20130201_rIgG_5.raw Medium ILNEMRDQYEQMAEK Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 279 2.37 0.00 1 24 44 3 633.29773 1897.87864 0.15 39.55 3608 3608 MS2 18/56 Linfeng_20130201_rIgG_6.raw Medium LLEGEDAHLSSQQASGQSYSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 346 2.36 0.00 0 10 50 3 784.03400 2350.08744 -1.37 30.75 2119 2119 MS2 25/84 Linfeng_20130204_CTCF_8.raw High VTmQNLNDR Unambiguous 4 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 385 2.36 0.00 0 10 50 2 553.76605 1106.52483 -1.00 17.08 543 543 MS2 14/16 Linfeng_20130204_CTCF_1.raw High TKYEHELALR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 533 2.36 0.00 1 36 50 2 630.34027 1259.67327 -0.82 26.78 2076 2076 MS2 13/18 Linfeng_20130201_rIgG_5.raw High VTmQNLNDR Unambiguous 4 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 375 2.35 0.00 0 26 50 2 553.76630 1106.52532 -0.56 17.07 989 989 MS2 14/16 Linfeng_20130201_rIgG_1.raw Medium TRLEQEIATYRR Unambiguous 5 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 500 2.34 0.00 2 42 50 3 512.61462 1535.82932 0.26 32.68 2660 2660 MS2 16/44 Linfeng_20130201_rIgG_5.raw Medium QRPSEIKDYSPYFK Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 522 2.33 0.00 2 15 50 3 586.63495 1757.89029 2.58 35.80 2623 2623 MS2 19/52 Linfeng_20130204_CTCF_8.raw High DAETWFLSK Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 295 2.33 0.00 0 7 50 2 548.76886 1096.53044 -0.51 51.11 4862 4862 MS2 14/16 Linfeng_20130201_rIgG_9.raw Medium TEELNKEVASNSELVQSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 486 2.31 0.00 1 0 50 3 707.35223 2120.04215 -2.13 32.94 2496 2496 MS2 24/72 Linfeng_20130204_CTCF_1.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 457 2.31 0.00 0 10 50 2 651.33453 1301.66179 2.60 33.70 2390 2390 MS2 14/22 Linfeng_20130204_CTCF_10.raw High APSTYGGGLSVSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 371 2.29 0.00 0 0 50 2 669.83484 1338.66240 -1.85 31.15 2735 2735 MS2 16/26 Linfeng_20130201_rIgG_9.raw Medium TRLEQEIATYRR Unambiguous 5 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 506 2.28 0.00 2 8 50 3 512.61432 1535.82840 -0.34 32.77 2339 2339 MS2 15/44 Linfeng_20130204_CTCF_7.raw High VTMQNLNDR Unambiguous 4 3 P13645;P02533;P08779 CID 1.0000 0.0000 1 1 395 2.28 0.00 0 13 50 2 545.76813 1090.52898 -1.87 27.13 2288 2288 MS2 14/16 Linfeng_20130201_rIgG_9.raw Medium ILNEMRDQYEQMAEK Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 260 2.28 0.00 1 28 21 3 633.29669 1897.87552 -1.49 39.99 3035 3035 MS2 17/56 Linfeng_20130204_CTCF_10.raw Medium TKYEHELALR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 555 2.28 0.00 1 38 50 3 420.56287 1259.67405 -0.20 27.60 2158 2158 MS2 14/36 Linfeng_20130201_rIgG_5.raw High ILNEMRDQYEQmAEK Unambiguous 1 1 P08779 M12(Oxidation) CID 1.0000 0.0000 1 1 220 2.27 0.00 1 12 50 2 957.43848 1913.86968 -1.88 32.62 2282 2282 MS2 17/28 Linfeng_20130204_CTCF_10.raw Medium TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 536 2.26 0.00 1 31 50 3 460.58057 1379.72715 -0.47 36.27 2682 2682 MS2 18/40 Linfeng_20130204_CTCF_7.raw High LAADDFR Unambiguous 14 5 P13645;P02533;P08779;Q04695;Q15323 CID 1.0000 0.0000 1 1 387 2.25 0.00 0 5 50 2 404.20294 807.39861 -1.22 28.82 2487 2487 MS2 11/12 Linfeng_20130201_rIgG_1.raw High LASYLDK Unambiguous 10 5 P13645;P02533;P08779;Q04695;P35527 CID 1.0000 0.0000 1 1 292 2.25 0.00 0 17 50 2 405.22327 809.43926 -1.38 27.99 1648 1648 MS2 11/12 Linfeng_20130204_CTCF_6.raw High DAETWFLSK Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 297 2.24 0.00 0 5 50 2 548.76910 1096.53093 -0.06 51.00 4826 4826 MS2 13/16 Linfeng_20130201_rIgG_3.raw High VTmQNLNDR Unambiguous 4 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 356 2.20 0.00 0 26 50 2 553.76721 1106.52715 1.09 17.27 548 548 MS2 12/16 Linfeng_20130204_CTCF_7.raw High VTmQNLNDR Unambiguous 4 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 355 2.17 0.00 0 44 50 2 553.76691 1106.52654 0.54 17.17 977 977 MS2 15/16 Linfeng_20130201_rIgG_5.raw High LASYLDK Unambiguous 10 5 P13645;P02533;P08779;Q04695;P35527 CID 1.0000 0.0000 1 1 277 2.15 0.00 0 1 50 2 405.22366 809.44005 -0.40 28.44 2014 2014 MS2 11/12 Linfeng_20130204_CTCF_1.raw High VTMQNLNDR Unambiguous 4 3 P13645;P02533;P08779 CID 1.0000 0.0000 1 1 391 2.14 0.00 0 5 50 2 545.76874 1090.53020 -0.75 27.10 1852 1852 MS2 13/16 Linfeng_20130204_CTCF_1.raw High VTmQNLNDR Unambiguous 4 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 354 2.13 0.00 0 0 50 2 553.76685 1106.52641 0.43 17.24 1005 1005 MS2 12/16 Linfeng_20130201_rIgG_9.raw High VTMQNLNDR Unambiguous 4 3 P13645;P02533;P08779 CID 1.0000 0.0000 1 1 403 2.13 0.00 0 12 50 2 545.76868 1090.53008 -0.87 27.21 2289 2289 MS2 12/16 Linfeng_20130201_rIgG_10.raw High LASYLDK Unambiguous 10 5 P13645;P02533;P08779;Q04695;P35527 CID 1.0000 0.0000 1 1 287 2.12 0.00 0 0 50 2 405.22348 809.43968 -0.85 34.21 2623 2623 MS2 9/12 Linfeng_20130204_CTCF_1.raw High VTmQNLNDR Unambiguous 4 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 376 2.08 0.00 0 35 50 2 553.76636 1106.52544 -0.45 17.23 1003 1003 MS2 11/16 Linfeng_20130201_rIgG_10.raw High LASYLDK Unambiguous 10 5 P13645;P02533;P08779;Q04695;P35527 CID 1.0000 0.0000 1 1 282 2.03 0.00 0 0 50 2 405.22336 809.43944 -1.15 27.42 1890 1890 MS2 9/12 Linfeng_20130204_CTCF_1.raw High EVFTSSSSSSSR Unambiguous 1 1 P08779 CID 1.0000 0.0000 1 1 146 2.01 0.00 0 9 50 2 630.78851 1260.56975 -0.43 20.09 1342 1342 MS2 14/22 Linfeng_20130201_rIgG_5.raw P02538 "Keratin, type II cytoskeletal 6A OS=Homo sapiens GN=KRT6A PE=1 SV=3 - [K2C6A_HUMAN]" 43.09 2 1 23 193 356.53 40.96 20 115 232.26 37.77 19 78 564 60.0 8.00 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High ALYDAELSQmQTHISDTSVVLSmDNNR Unambiguous 6 3 P02538;P04259;P48668 M10(Oxidation); M23(Oxidation) CID 1.0000 0.0000 1 1 260 5.99 0.00 0 0 13 3 1024.14258 3070.41318 1.25 44.05 4003 4003 MS2 38/104 Linfeng_20130201_rIgG_5.raw High ALYDAELSQmQTHISDTSVVLSmDNNR Unambiguous 6 3 P02538;P04259;P48668 M10(Oxidation); M23(Oxidation) CID 1.0000 0.0000 1 1 259 5.85 0.00 0 0 30 3 1024.14197 3070.41135 0.66 44.19 4085 4085 MS2 36/104 Linfeng_20130201_rIgG_1.raw High AEAESWYQTKYEELQVTAGR Unambiguous 5 2 P02538;P48668 CID 1.0000 0.0000 1 1 391 5.43 0.00 1 2 2 3 787.04529 2359.12131 0.49 45.87 4231 4231 MS2 37/76 Linfeng_20130201_rIgG_5.raw High ALYDAELSQmQTHISDTSVVLSmDNNR Unambiguous 6 3 P02538;P04259;P48668 M10(Oxidation); M23(Oxidation) CID 1.0000 0.0000 1 1 253 5.31 0.00 0 0 50 3 1024.14099 3070.40842 -0.30 44.23 4038 4038 MS2 35/104 Linfeng_20130201_rIgG_2.raw High ALYDAELSQmQTHISDTSVVLSmDNNR Unambiguous 6 3 P02538;P04259;P48668 M10(Oxidation); M23(Oxidation) CID 1.0000 0.0000 1 1 259 5.25 0.00 0 0 50 3 1024.14197 3070.41135 0.66 44.34 4102 4102 MS2 38/104 Linfeng_20130201_rIgG_6.raw High AEAESWYQTKYEELQVTAGR Unambiguous 5 2 P02538;P48668 CID 1.0000 0.0000 1 1 395 5.09 0.00 1 10 40 3 787.04559 2359.12223 0.88 45.88 4227 4227 MS2 37/76 Linfeng_20130201_rIgG_3.raw High AIGGGLSSVGGGSSTIK Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 463 5.03 0.00 0 8 50 2 724.39142 1447.77556 0.26 34.16 2819 2819 MS2 26/32 Linfeng_20130201_rIgG_5.raw High AEAESWYQTKYEELQVTAGR Unambiguous 5 2 P02538;P48668 CID 1.0000 0.0000 1 1 410 4.93 0.00 1 6 37 3 787.04742 2359.12772 3.20 46.14 3519 3519 MS2 29/76 Linfeng_20130204_CTCF_6.raw High ALYDAELSQmQTHISDTSVVLSmDNNR Unambiguous 6 3 P02538;P04259;P48668 M10(Oxidation); M23(Oxidation) CID 1.0000 0.0000 1 1 260 4.87 0.00 0 0 49 3 1024.14124 3070.40915 -0.06 44.36 4065 4065 MS2 39/104 Linfeng_20130201_rIgG_3.raw High AIGGGLSSVGGGSSTIK Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 473 4.82 0.00 0 13 50 2 724.39331 1447.77934 2.88 34.37 2278 2278 MS2 26/32 Linfeng_20130204_CTCF_6.raw High SRAEAESWYQTKYEELQVTAGR Unambiguous 5 2 P02538;P48668 CID 1.0000 0.0000 1 1 448 4.56 0.00 2 0 14 3 868.09106 2602.25864 2.05 43.80 3266 3266 MS2 26/84 Linfeng_20130204_CTCF_6.raw High AIGGGLSSVGGGSSTIK Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 493 4.52 0.00 0 3 30 2 724.39191 1447.77654 0.94 35.10 2921 2921 MS2 27/32 Linfeng_20130201_rIgG_5.raw High AIGGGLSSVGGGSSTIK Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 497 4.45 0.00 0 0 50 2 724.39337 1447.77947 2.96 35.45 2386 2386 MS2 28/32 Linfeng_20130204_CTCF_6.raw High AIGGGLSSVGGGSSTIK Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 441 4.44 0.00 0 8 50 2 724.39063 1447.77397 -0.83 34.23 2582 2582 MS2 23/32 Linfeng_20130204_CTCF_2.raw High AIGGGLSSVGGGSSTIK Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 452 4.34 0.00 0 0 50 2 724.39099 1447.77471 -0.33 34.15 3017 3017 MS2 26/32 Linfeng_20130201_rIgG_3.raw High AIGGGLSSVGGGSSTIKYTTTSSSSR Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 534 4.27 0.00 1 6 9 3 806.74316 2418.21494 1.72 35.50 2965 2965 MS2 32/100 Linfeng_20130201_rIgG_5.raw High ALYDAELSQmQTHISDTSVVLSmDNNR Unambiguous 6 3 P02538;P04259;P48668 M10(Oxidation); M23(Oxidation) CID 1.0000 0.0000 1 1 263 4.20 0.00 0 0 50 3 1024.14343 3070.41574 2.09 44.45 3336 3336 MS2 24/104 Linfeng_20130204_CTCF_6.raw High AIGGGLSSVGGGSSTIK Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 452 4.14 0.00 0 6 50 2 724.38995 1447.77263 -1.76 34.13 3028 3028 MS2 25/32 Linfeng_20130201_rIgG_9.raw High AIGGGLSSVGGGSSTIK Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 454 4.13 0.00 0 0 50 2 724.39099 1447.77471 -0.33 34.20 3025 3025 MS2 23/32 Linfeng_20130201_rIgG_10.raw High AIGGGLSSVGGGSSTIK Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 463 4.13 0.00 0 0 50 2 724.39124 1447.77519 0.01 34.20 3005 3005 MS2 28/32 Linfeng_20130201_rIgG_4.raw High AIGGGLSSVGGGSSTIK Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 494 4.08 0.00 0 4 50 2 724.39014 1447.77300 -1.51 35.37 3151 3151 MS2 24/32 Linfeng_20130201_rIgG_9.raw High AIGGGLSSVGGGSSTIKYTTTSSSSR Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 540 4.04 0.00 1 2 36 3 806.74194 2418.21128 0.20 35.69 3170 3170 MS2 33/100 Linfeng_20130201_rIgG_3.raw High AIGGGLSSVGGGSSTIKYTTTSSSSR Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 534 3.99 0.00 1 8 50 3 806.74127 2418.20926 -0.63 35.76 3273 3273 MS2 34/100 Linfeng_20130201_rIgG_7.raw High NKLEGLEDALQK Unambiguous 6 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 494 3.96 0.00 1 31 50 2 679.37103 1357.73479 1.88 40.15 2876 2876 MS2 19/22 Linfeng_20130204_CTCF_6.raw High AIGGGLSSVGGGSSTIKYTTTSSSSR Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 530 3.94 0.00 1 19 50 3 806.74121 2418.20908 -0.70 35.66 3151 3151 MS2 30/100 Linfeng_20130201_rIgG_4.raw High AIGGGLSSVGGGSSTIK Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 470 3.92 0.00 0 3 50 2 724.39203 1447.77678 1.10 34.45 2504 2504 MS2 24/32 Linfeng_20130204_CTCF_7.raw High AIGGGLSSVGGGSSTIK Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 493 3.88 0.00 0 21 50 2 724.39172 1447.77617 0.68 33.93 2990 2990 MS2 24/32 Linfeng_20130201_rIgG_2.raw High AIGGGLSSVGGGSSTIK Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 391 3.85 0.00 0 0 50 2 724.39160 1447.77593 0.51 34.37 2302 2302 MS2 21/32 Linfeng_20130204_CTCF_3.raw High ISIGGGScAISGGYGSR Unambiguous 6 3 P02538;P04259;P48668 C8(Carbamidomethyl) CID 1.0000 0.0000 1 1 353 3.79 0.00 0 6 50 2 799.88300 1598.75871 -0.31 36.91 2746 2746 MS2 21/32 Linfeng_20130204_CTCF_7.raw High ALYDAELSQmQTHISDTSVVLSmDNNR Unambiguous 6 3 P02538;P04259;P48668 M10(Oxidation); M23(Oxidation) CID 1.0000 0.0000 1 1 262 3.79 0.00 0 0 50 3 1024.14270 3070.41355 1.37 44.35 3612 3612 MS2 28/104 Linfeng_20130204_CTCF_2.raw High AIGGGLSSVGGGSSTIK Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 451 3.78 0.00 0 11 50 2 724.39105 1447.77483 -0.24 33.89 3006 3006 MS2 24/32 Linfeng_20130201_rIgG_1.raw High AIGGGLSSVGGGSSTIK Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 436 3.74 0.00 0 12 50 2 724.39380 1447.78032 3.55 34.55 2315 2315 MS2 21/32 Linfeng_20130204_CTCF_4.raw High ISIGGGScAISGGYGSR Unambiguous 6 3 P02538;P04259;P48668 C8(Carbamidomethyl) CID 1.0000 0.0000 1 1 344 3.67 0.00 0 9 50 2 799.88281 1598.75835 -0.54 36.16 3233 3233 MS2 20/32 Linfeng_20130201_rIgG_1.raw High ALYDAELSQmQTHISDTSVVLSmDNNR Unambiguous 6 3 P02538;P04259;P48668 M10(Oxidation); M23(Oxidation) CID 1.0000 0.0000 1 1 265 3.63 0.00 0 2 27 3 1024.14221 3070.41208 0.90 44.65 3358 3358 MS2 25/104 Linfeng_20130204_CTCF_6.raw High ISIGGGScAISGGYGSR Unambiguous 6 3 P02538;P04259;P48668 C8(Carbamidomethyl) CID 1.0000 0.0000 1 1 333 3.56 0.00 0 12 50 2 799.88422 1598.76116 1.22 36.85 2547 2547 MS2 16/32 Linfeng_20130204_CTCF_3.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 371 3.54 0.00 0 5 7 2 632.35077 1263.69426 -0.09 50.01 4794 4794 MS2 18/20 Linfeng_20130201_rIgG_1.raw High AIGGGLSSVGGGSSTIK Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 446 3.53 0.00 0 9 50 2 724.39105 1447.77483 -0.24 34.30 3078 3078 MS2 24/32 Linfeng_20130201_rIgG_6.raw High ISIGGGScAISGGYGSR Unambiguous 6 3 P02538;P04259;P48668 C8(Carbamidomethyl) CID 1.0000 0.0000 1 1 392 3.53 0.00 0 25 50 2 799.88428 1598.76128 1.30 36.41 2842 2842 MS2 18/32 Linfeng_20130204_CTCF_1.raw High ISIGGGScAISGGYGSR Unambiguous 6 3 P02538;P04259;P48668 C8(Carbamidomethyl) CID 1.0000 0.0000 1 1 384 3.52 0.00 0 30 50 2 799.88287 1598.75847 -0.46 37.06 2730 2730 MS2 19/32 Linfeng_20130204_CTCF_10.raw High SRAEAESWYQTKYEELQVTAGR Unambiguous 5 2 P02538;P48668 CID 1.0000 0.0000 1 1 459 3.49 0.00 2 35 50 4 651.31879 2602.25332 0.00 43.42 3966 3966 MS2 33/126 Linfeng_20130201_rIgG_3.raw High ALYDAELSQmQTHISDTSVVLSmDNNR Unambiguous 6 3 P02538;P04259;P48668 M10(Oxidation); M23(Oxidation) CID 1.0000 0.0000 1 1 262 3.48 0.00 0 2 8 4 768.35876 3070.41323 1.27 44.24 4027 4027 MS2 36/156 Linfeng_20130201_rIgG_5.raw High AIGGGLSSVGGGSSTIKYTTTSSSSR Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 549 3.47 0.00 1 11 50 3 806.74243 2418.21274 0.81 35.55 3172 3172 MS2 30/100 Linfeng_20130201_rIgG_1.raw High AIGGGLSSVGGGSSTIK Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 481 3.45 0.00 0 13 50 2 724.39142 1447.77556 0.26 34.36 3135 3135 MS2 20/32 Linfeng_20130201_rIgG_7.raw High NKLEGLEDALQK Unambiguous 6 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 511 3.43 0.00 1 5 50 3 453.24884 1357.73197 -0.20 39.96 3593 3593 MS2 27/44 Linfeng_20130201_rIgG_4.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 381 3.43 0.00 0 3 7 2 632.35175 1263.69621 1.45 50.26 4722 4722 MS2 18/20 Linfeng_20130201_rIgG_2.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 557 3.39 0.00 2 2 50 3 436.88916 1308.65293 -1.05 21.12 1536 1536 MS2 21/36 Linfeng_20130201_rIgG_10.raw High ISIGGGScAISGGYGSR Unambiguous 6 3 P02538;P04259;P48668 C8(Carbamidomethyl) CID 1.0000 0.0000 1 1 376 3.38 0.00 0 13 50 2 799.88348 1598.75969 0.30 36.44 3246 3246 MS2 20/32 Linfeng_20130201_rIgG_3.raw High SRAEAESWYQTKYEELQVTAGR Unambiguous 5 2 P02538;P48668 CID 1.0000 0.0000 1 1 447 3.37 0.00 2 7 4 4 651.31854 2602.25234 -0.37 43.24 3900 3900 MS2 38/126 Linfeng_20130201_rIgG_5.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 380 3.36 0.00 0 7 17 2 632.35144 1263.69560 0.97 50.45 4817 4817 MS2 18/20 Linfeng_20130201_rIgG_6.raw High NKLEGLEDALQK Unambiguous 6 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 491 3.35 0.00 1 31 50 2 679.36975 1357.73223 -0.01 39.83 3580 3580 MS2 19/22 Linfeng_20130201_rIgG_4.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 364 3.35 0.00 0 0 23 2 632.35095 1263.69463 0.19 50.50 4792 4792 MS2 18/20 Linfeng_20130201_rIgG_9.raw High LLKEYQELmNVK Unambiguous 6 3 P02538;P04259;P48668 M9(Oxidation) CID 1.0000 0.0000 1 1 458 3.34 0.00 1 17 13 3 508.60922 1523.81311 -0.49 37.22 3155 3155 MS2 24/44 Linfeng_20130201_rIgG_5.raw High ISIGGGScAISGGYGSR Unambiguous 6 3 P02538;P04259;P48668 C8(Carbamidomethyl) CID 1.0000 0.0000 1 1 369 3.32 0.00 0 21 50 2 799.88257 1598.75786 -0.84 36.58 3261 3261 MS2 20/32 Linfeng_20130201_rIgG_10.raw High AIGGGLSSVGGGSSTIKYTTTSSSSR Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 541 3.30 0.00 1 12 50 3 806.74194 2418.21128 0.20 35.49 3144 3144 MS2 31/100 Linfeng_20130201_rIgG_2.raw High AIGGGLSSVGGGSSTIK Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 431 3.30 0.00 0 3 50 2 724.39130 1447.77532 0.09 34.86 2507 2507 MS2 18/32 Linfeng_20130204_CTCF_10.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 370 3.30 0.00 0 1 9 2 632.35095 1263.69463 0.19 50.48 4784 4784 MS2 18/20 Linfeng_20130201_rIgG_10.raw High ISIGGGScAISGGYGSR Unambiguous 6 3 P02538;P04259;P48668 C8(Carbamidomethyl) CID 1.0000 0.0000 1 1 383 3.29 0.00 0 31 50 2 799.88397 1598.76067 0.91 36.61 3247 3247 MS2 18/32 Linfeng_20130201_rIgG_4.raw High AIGGGLSSVGGGSSTIKYTTTSSSSR Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 550 3.29 0.00 1 16 50 3 806.74182 2418.21091 0.05 35.77 3223 3223 MS2 32/100 Linfeng_20130201_rIgG_6.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 369 3.29 0.00 0 13 50 2 632.35126 1263.69524 0.68 50.66 3993 3993 MS2 18/20 Linfeng_20130204_CTCF_6.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 373 3.29 0.00 0 6 18 2 632.35089 1263.69451 0.10 50.14 4276 4276 MS2 17/20 Linfeng_20130204_CTCF_1.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 412 3.29 0.00 0 4 50 2 632.35089 1263.69451 0.10 51.23 4389 4389 MS2 18/20 Linfeng_20130204_CTCF_1.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 544 3.26 0.00 2 7 50 3 436.88925 1308.65320 -0.84 21.06 1533 1533 MS2 20/36 Linfeng_20130201_rIgG_3.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 546 3.25 0.00 2 8 50 3 436.88937 1308.65357 -0.56 20.77 1473 1473 MS2 19/36 Linfeng_20130201_rIgG_2.raw High NKLEGLEDALQK Unambiguous 6 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 537 3.25 0.00 1 9 50 3 453.25003 1357.73554 2.43 40.13 2874 2874 MS2 21/44 Linfeng_20130204_CTCF_6.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 404 3.24 0.00 0 9 28 2 632.35107 1263.69487 0.39 50.67 4337 4337 MS2 17/20 Linfeng_20130204_CTCF_8.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 391 3.23 0.00 0 9 21 2 632.35101 1263.69475 0.29 50.32 4757 4757 MS2 18/20 Linfeng_20130201_rIgG_4.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 412 3.19 0.00 0 16 20 2 632.35083 1263.69438 0.00 51.10 4927 4927 MS2 18/20 Linfeng_20130201_rIgG_1.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 384 3.19 0.00 0 0 28 2 632.35083 1263.69438 0.00 50.46 4287 4287 MS2 18/20 Linfeng_20130204_CTCF_2.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 543 3.18 0.00 2 3 50 3 436.88934 1308.65348 -0.63 21.08 1503 1503 MS2 19/36 Linfeng_20130201_rIgG_4.raw High LLKEYQELmNVK Unambiguous 6 3 P02538;P04259;P48668 M9(Oxidation) CID 1.0000 0.0000 1 1 449 3.17 0.00 1 14 50 2 762.41217 1523.81706 2.11 37.45 3181 3181 MS2 17/22 Linfeng_20130201_rIgG_5.raw High LLKEYQELMNVK Unambiguous 6 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 429 3.17 0.00 1 5 20 3 503.27826 1507.82022 0.85 45.78 3479 3479 MS2 22/44 Linfeng_20130204_CTCF_6.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 369 3.16 0.00 0 3 15 2 632.35052 1263.69377 -0.48 50.69 4239 4239 MS2 18/20 Linfeng_20130204_CTCF_7.raw High AIGGGLSSVGGGSSTIK Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 452 3.16 0.00 0 25 50 2 724.39154 1447.77580 0.43 34.14 2616 2616 MS2 16/32 Linfeng_20130204_CTCF_1.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 368 3.14 0.00 1 8 3 2 541.80359 1082.59990 0.50 38.24 3272 3272 MS2 15/16 Linfeng_20130201_rIgG_5.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 360 3.13 0.00 0 5 50 2 632.35236 1263.69744 2.42 50.69 3979 3979 MS2 18/20 Linfeng_20130204_CTCF_4.raw High DVDAAYMNKVELQAK Unambiguous 8 4 P02538;P04259;P48668;H9KV51 CID 1.0000 0.0000 1 1 513 3.13 0.00 1 5 37 3 565.61987 1694.84507 1.88 38.47 2694 2694 MS2 20/56 Linfeng_20130204_CTCF_6.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 529 3.11 0.00 2 1 50 3 436.88965 1308.65439 0.07 21.08 1536 1536 MS2 20/36 Linfeng_20130201_rIgG_9.raw High NKLEGLEDALQK Unambiguous 6 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 495 3.10 0.00 1 14 41 2 679.37000 1357.73271 0.35 39.76 3466 3466 MS2 17/22 Linfeng_20130201_rIgG_5.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 533 3.08 0.00 2 4 50 3 436.88953 1308.65403 -0.21 21.39 1584 1584 MS2 21/36 Linfeng_20130201_rIgG_6.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 338 3.07 0.00 0 13 50 2 632.35077 1263.69426 -0.09 50.61 3969 3969 MS2 18/20 Linfeng_20130204_CTCF_3.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 442 3.07 0.00 0 2 50 2 554.27460 1107.54192 -0.93 25.34 1393 1393 MS2 14/16 Linfeng_20130204_CTCF_6.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 311 3.05 0.00 1 21 50 2 541.80347 1082.59966 0.27 38.69 3473 3473 MS2 15/16 Linfeng_20130201_rIgG_3.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 389 3.05 0.00 0 4 9 2 632.35114 1263.69499 0.48 50.37 4753 4753 MS2 18/20 Linfeng_20130201_rIgG_3.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 343 3.04 0.00 1 56 50 2 541.80585 1082.60442 4.67 39.54 2816 2816 MS2 13/16 Linfeng_20130204_CTCF_4.raw High YEELQVTAGR Unambiguous 5 2 P02538;P48668 CID 1.0000 0.0000 1 1 543 3.04 0.00 0 11 30 2 583.29614 1165.58501 0.16 32.50 2088 2088 MS2 17/18 Linfeng_20130204_CTCF_6.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 366 3.02 0.00 1 17 36 2 541.80377 1082.60027 0.84 38.78 3468 3468 MS2 15/16 Linfeng_20130201_rIgG_4.raw High ISIGGGScAISGGYGSR Unambiguous 6 3 P02538;P04259;P48668 C8(Carbamidomethyl) CID 1.0000 0.0000 1 1 357 3.02 0.00 0 26 50 2 799.88312 1598.75896 -0.15 36.23 3218 3218 MS2 19/32 Linfeng_20130201_rIgG_2.raw High LALDVEIATYRK Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 301 3.02 0.00 1 25 23 2 696.39807 1391.78887 -0.35 44.32 4037 4037 MS2 17/22 Linfeng_20130201_rIgG_5.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 648 2.99 0.00 0 1 5 2 602.32263 1203.63799 0.94 42.65 3143 3143 MS2 17/18 Linfeng_20130204_CTCF_6.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 442 2.96 0.00 0 7 50 2 554.27441 1107.54155 -1.26 26.19 1475 1475 MS2 14/16 Linfeng_20130204_CTCF_6.raw High TAAENEFVTLK Unambiguous 6 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 515 2.95 0.00 0 9 37 2 611.81964 1222.63201 0.45 38.68 2716 2716 MS2 15/20 Linfeng_20130204_CTCF_6.raw High NLDLDSIIAEVK Unambiguous 13 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 586 2.92 0.00 0 22 40 2 665.36633 1329.72539 -0.53 50.96 4023 4023 MS2 18/22 Linfeng_20130204_CTCF_6.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 361 2.92 0.00 0 4 50 2 632.35059 1263.69390 -0.38 50.96 4291 4291 MS2 17/20 Linfeng_20130204_CTCF_9.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 352 2.92 0.00 1 19 50 2 541.80304 1082.59880 -0.52 38.29 3426 3426 MS2 15/16 Linfeng_20130201_rIgG_2.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 581 2.92 0.00 0 16 50 2 602.32123 1203.63518 -1.40 41.17 3330 3330 MS2 16/18 Linfeng_20130204_CTCF_1.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 429 2.90 0.00 0 28 8 2 632.35022 1263.69316 -0.96 50.11 4779 4779 MS2 18/20 Linfeng_20130201_rIgG_5.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 330 2.90 0.00 1 11 50 2 541.80341 1082.59953 0.16 38.46 3467 3467 MS2 15/16 Linfeng_20130201_rIgG_1.raw High LALDVEIATYRK Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 297 2.89 0.00 1 40 50 2 696.39825 1391.78923 -0.09 44.41 4063 4063 MS2 17/22 Linfeng_20130201_rIgG_4.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 391 2.88 0.00 0 4 27 2 632.35120 1263.69512 0.58 50.42 4851 4851 MS2 18/20 Linfeng_20130201_rIgG_7.raw High AIGGGLSSVGGGSSTIKYTTTSSSSR Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 530 2.86 0.00 1 33 50 3 806.74103 2418.20853 -0.93 35.79 3182 3182 MS2 25/100 Linfeng_20130201_rIgG_10.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 413 2.86 0.00 0 16 50 2 632.35260 1263.69792 2.80 51.92 4119 4119 MS2 16/20 Linfeng_20130204_CTCF_6.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 325 2.81 0.00 1 10 50 2 541.80310 1082.59892 -0.40 38.88 3045 3045 MS2 15/16 Linfeng_20130204_CTCF_2.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 450 2.80 0.00 0 0 16 2 632.35016 1263.69304 -1.06 50.43 4886 4886 MS2 17/20 Linfeng_20130201_rIgG_8.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 353 2.79 0.00 1 35 16 2 541.80286 1082.59844 -0.85 38.84 3353 3353 MS2 15/16 Linfeng_20130201_rIgG_5.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 657 2.78 0.00 0 6 50 2 602.32220 1203.63713 0.23 41.80 3396 3396 MS2 15/18 Linfeng_20130204_CTCF_1.raw High AIGGGLSSVGGGSSTIKYTTTSSSSR Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 540 2.78 0.00 1 4 50 3 806.74152 2418.21000 -0.33 35.80 3194 3194 MS2 29/100 Linfeng_20130201_rIgG_9.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 370 2.76 0.00 1 11 17 2 541.80353 1082.59978 0.39 39.08 2759 2759 MS2 15/16 Linfeng_20130204_CTCF_6.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 657 2.74 0.00 0 7 17 2 602.32214 1203.63701 0.12 41.62 3035 3035 MS2 16/18 Linfeng_20130204_CTCF_6.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 677 2.74 0.00 0 28 50 2 602.32190 1203.63652 -0.28 41.92 3262 3262 MS2 16/18 Linfeng_20130204_CTCF_7.raw Medium SRAEAESWYQTKYEELQVTAGR Unambiguous 5 2 P02538;P48668 CID 1.0000 0.0000 1 1 449 2.74 0.00 2 9 5 4 651.32019 2602.25893 2.16 43.68 3253 3253 MS2 28/126 Linfeng_20130204_CTCF_6.raw High NKLEGLEDALQK Unambiguous 6 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 521 2.73 0.00 1 20 50 3 453.24881 1357.73188 -0.27 40.09 3172 3172 MS2 20/44 Linfeng_20130204_CTCF_2.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 339 2.71 0.00 1 0 17 2 541.80212 1082.59697 -2.21 38.74 3340 3340 MS2 15/16 Linfeng_20130201_rIgG_5.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 370 2.71 0.00 1 33 50 2 541.80371 1082.60015 0.72 39.05 3606 3606 MS2 14/16 Linfeng_20130201_rIgG_7.raw High RGFSANSAR Unambiguous 4 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 371 2.70 0.00 1 11 50 2 483.24899 965.49071 -0.51 16.73 923 923 MS2 15/16 Linfeng_20130201_rIgG_5.raw High SGFSSVSVSR Unambiguous 1 1 P02538 CID 1.0000 0.0000 1 1 291 2.70 0.00 0 30 50 2 506.75659 1012.50591 0.06 29.33 1777 1777 MS2 14/18 Linfeng_20130204_CTCF_6.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 408 2.70 0.00 0 30 38 2 632.35114 1263.69499 0.48 51.32 4875 4875 MS2 17/20 Linfeng_20130201_rIgG_4.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 358 2.68 0.00 1 50 50 2 541.80542 1082.60356 3.88 39.43 3002 3002 MS2 15/16 Linfeng_20130204_CTCF_7.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 463 2.68 0.00 0 0 50 2 554.27625 1107.54521 2.04 26.06 2157 2157 MS2 14/16 Linfeng_20130201_rIgG_10.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 507 2.68 0.00 0 16 50 2 554.27521 1107.54314 0.17 25.15 1911 1911 MS2 14/16 Linfeng_20130201_rIgG_5.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 367 2.67 0.00 1 35 50 2 541.80475 1082.60222 2.64 39.63 3049 3049 MS2 15/16 Linfeng_20130204_CTCF_9.raw High RGFSANSAR Unambiguous 4 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 374 2.66 0.00 1 5 50 2 483.24878 965.49028 -0.95 16.19 855 855 MS2 13/16 Linfeng_20130201_rIgG_5.raw High SRAEAESWYQTK Unambiguous 7 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 329 2.65 0.00 1 12 50 3 485.89960 1455.68424 -1.44 28.31 1680 1680 MS2 17/44 Linfeng_20130204_CTCF_6.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 393 2.64 0.00 0 21 50 2 632.35425 1263.70122 5.41 51.62 4404 4404 MS2 15/20 Linfeng_20130204_CTCF_2.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 419 2.63 0.00 0 0 31 2 632.34979 1263.69231 -1.64 51.13 4245 4245 MS2 17/20 Linfeng_20130204_CTCF_10.raw High SGFSSVSVSR Unambiguous 1 1 P02538 CID 1.0000 0.0000 1 1 303 2.62 0.00 0 0 50 2 506.75601 1012.50475 -1.08 30.27 2631 2631 MS2 14/18 Linfeng_20130201_rIgG_3.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 353 2.62 0.00 1 15 15 2 541.80292 1082.59856 -0.74 38.71 3336 3336 MS2 15/16 Linfeng_20130201_rIgG_5.raw High SGFSSVSVSR Unambiguous 1 1 P02538 CID 1.0000 0.0000 1 1 248 2.62 0.00 0 6 50 2 506.75684 1012.50640 0.55 28.92 2288 2288 MS2 16/18 Linfeng_20130201_rIgG_5.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 367 2.61 0.00 1 28 50 2 541.80426 1082.60124 1.74 39.63 2995 2995 MS2 15/16 Linfeng_20130204_CTCF_10.raw High AIGGGLSSVGGGSSTIKYTTTSSSSR Unambiguous 4 2 P02538;P48668 CID 1.0000 0.0000 1 1 540 2.61 0.00 1 12 50 3 806.74066 2418.20743 -1.39 35.73 2729 2729 MS2 24/100 Linfeng_20130204_CTCF_2.raw High NKLEGLEDALQK Unambiguous 6 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 477 2.60 0.00 1 53 50 2 679.36981 1357.73235 0.08 39.29 3557 3557 MS2 18/22 Linfeng_20130201_rIgG_1.raw Medium SRAEAESWYQTKYEELQVTAGR Unambiguous 5 2 P02538;P48668 CID 1.0000 0.0000 1 1 449 2.59 0.00 2 13 42 4 651.32013 2602.25869 2.07 43.69 4000 4000 MS2 29/126 Linfeng_20130201_rIgG_9.raw High VRAEEREQIK Unambiguous 7 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 529 2.58 0.00 2 30 50 3 419.90186 1257.69101 -0.02 16.00 835 835 MS2 21/36 Linfeng_20130201_rIgG_5.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 356 2.58 0.00 1 19 47 2 541.80518 1082.60307 3.43 40.09 2869 2869 MS2 15/16 Linfeng_20130204_CTCF_6.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 536 2.55 0.00 2 18 50 3 436.88947 1308.65384 -0.35 20.77 1478 1478 MS2 18/36 Linfeng_20130201_rIgG_1.raw High LLKEYQELmNVK Unambiguous 6 3 P02538;P04259;P48668 M9(Oxidation) CID 1.0000 0.0000 1 1 454 2.55 0.00 1 3 50 3 508.61029 1523.81632 1.62 37.75 2618 2618 MS2 12/44 Linfeng_20130204_CTCF_6.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 325 2.54 0.00 1 26 41 2 541.80322 1082.59917 -0.18 38.91 3499 3499 MS2 15/16 Linfeng_20130201_rIgG_10.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 534 2.54 0.00 2 2 50 3 436.88959 1308.65421 -0.07 21.58 1010 1010 MS2 19/36 Linfeng_20130204_CTCF_6.raw High SLYGLGGSKR Unambiguous 6 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 375 2.52 0.00 1 23 50 2 519.29010 1037.57292 -0.90 28.53 2249 2249 MS2 14/18 Linfeng_20130201_rIgG_5.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 527 2.52 0.00 2 41 50 3 436.88953 1308.65403 -0.21 19.76 1340 1340 MS2 15/36 Linfeng_20130201_rIgG_2.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 460 2.52 0.00 0 20 50 2 554.27435 1107.54143 -1.37 25.94 2145 2145 MS2 14/16 Linfeng_20130201_rIgG_3.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 585 2.51 0.00 0 22 43 2 602.32166 1203.63603 -0.69 42.15 3266 3266 MS2 16/18 Linfeng_20130204_CTCF_10.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 676 2.51 0.00 0 26 19 2 602.32172 1203.63616 -0.59 41.46 3752 3752 MS2 17/18 Linfeng_20130201_rIgG_4.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 325 2.49 0.00 1 33 50 2 541.80322 1082.59917 -0.18 39.27 2988 2988 MS2 15/16 Linfeng_20130204_CTCF_8.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 458 2.48 0.00 0 0 50 2 554.27472 1107.54216 -0.71 25.66 1686 1686 MS2 14/16 Linfeng_20130204_CTCF_1.raw High RGFSANSAR Unambiguous 4 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 366 2.47 0.00 1 21 50 2 483.24884 965.49040 -0.83 16.88 967 967 MS2 10/16 Linfeng_20130201_rIgG_6.raw Medium NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 528 2.47 0.00 2 54 50 3 436.88983 1308.65494 0.49 20.07 1370 1370 MS2 19/36 Linfeng_20130201_rIgG_4.raw High ISIGGGScAISGGYGSR Unambiguous 6 3 P02538;P04259;P48668 C8(Carbamidomethyl) CID 1.0000 0.0000 1 1 397 2.44 0.00 0 0 50 2 799.88300 1598.75871 -0.31 36.86 2841 2841 MS2 12/32 Linfeng_20130204_CTCF_2.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 605 2.44 0.00 0 33 50 2 602.32281 1203.63835 1.24 41.68 3039 3039 MS2 16/18 Linfeng_20130204_CTCF_3.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 499 2.43 0.00 0 0 50 2 554.27533 1107.54338 0.39 25.75 2120 2120 MS2 14/16 Linfeng_20130201_rIgG_1.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 674 2.43 0.00 0 30 50 2 602.32196 1203.63664 -0.18 41.37 3755 3755 MS2 16/18 Linfeng_20130201_rIgG_10.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 600 2.42 0.00 0 35 50 2 602.32300 1203.63872 1.54 42.11 3080 3080 MS2 14/18 Linfeng_20130204_CTCF_4.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 524 2.41 0.00 2 4 50 2 654.82965 1308.65203 -1.74 20.78 1491 1491 MS2 14/18 Linfeng_20130201_rIgG_10.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 506 2.39 0.00 0 9 50 2 554.27521 1107.54314 0.17 25.40 1569 1569 MS2 13/16 Linfeng_20130204_CTCF_7.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 309 2.37 0.00 1 17 50 2 541.80347 1082.59966 0.27 39.60 3561 3561 MS2 12/16 Linfeng_20130201_rIgG_2.raw High SGFSSVSVSR Unambiguous 1 1 P02538 CID 1.0000 0.0000 1 1 276 2.37 0.00 0 15 50 2 506.75665 1012.50603 0.19 29.93 2387 2387 MS2 14/18 Linfeng_20130201_rIgG_5.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 400 2.36 0.00 0 24 50 2 632.34979 1263.69231 -1.64 57.77 5133 5133 MS2 15/20 Linfeng_20130204_CTCF_1.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 437 2.36 0.00 0 0 50 2 554.27509 1107.54289 -0.05 25.62 1681 1681 MS2 13/16 Linfeng_20130204_CTCF_1.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 367 2.36 0.00 1 47 29 2 541.80359 1082.59990 0.50 39.12 3388 3388 MS2 13/16 Linfeng_20130201_rIgG_5.raw High RGFSANSAR Unambiguous 4 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 373 2.35 0.00 1 8 50 2 483.24847 965.48967 -1.58 16.85 953 953 MS2 13/16 Linfeng_20130201_rIgG_9.raw High SGFSSVSVSR Unambiguous 1 1 P02538 CID 1.0000 0.0000 1 1 279 2.34 0.00 0 13 50 2 506.75705 1012.50682 0.97 30.39 2692 2692 MS2 13/18 Linfeng_20130201_rIgG_6.raw Medium NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 528 2.34 0.00 2 6 50 3 436.88968 1308.65448 0.14 21.24 1550 1550 MS2 17/36 Linfeng_20130201_rIgG_8.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 344 2.34 0.00 1 29 50 2 541.80499 1082.60271 3.09 39.44 2810 2810 MS2 14/16 Linfeng_20130204_CTCF_3.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 367 2.33 0.00 1 53 50 2 541.80389 1082.60051 1.06 39.10 3561 3561 MS2 14/16 Linfeng_20130201_rIgG_6.raw Medium NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 528 2.32 0.00 2 58 50 3 436.88989 1308.65512 0.63 20.24 1360 1360 MS2 16/36 Linfeng_20130201_rIgG_5.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 491 2.32 0.00 0 33 50 2 554.27655 1107.54582 2.59 25.94 2205 2205 MS2 14/16 Linfeng_20130201_rIgG_7.raw Medium NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 560 2.31 0.00 2 40 50 3 436.89014 1308.65586 1.19 20.76 1421 1421 MS2 18/36 Linfeng_20130201_rIgG_5.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 461 2.27 0.00 0 29 50 2 554.27411 1107.54094 -1.81 26.16 2014 2014 MS2 14/16 Linfeng_20130201_rIgG_5.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 493 2.27 0.00 0 11 50 2 554.27539 1107.54350 0.50 25.99 1456 1456 MS2 12/16 Linfeng_20130204_CTCF_6.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 513 2.27 0.00 2 11 50 2 654.83185 1308.65642 1.62 21.17 967 967 MS2 14/18 Linfeng_20130204_CTCF_6.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 354 2.27 0.00 1 19 50 2 541.80298 1082.59868 -0.63 39.96 3606 3606 MS2 12/16 Linfeng_20130201_rIgG_3.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 674 2.26 0.00 0 15 49 2 602.32257 1203.63786 0.83 41.40 3307 3307 MS2 16/18 Linfeng_20130204_CTCF_2.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 683 2.26 0.00 0 25 35 2 602.32245 1203.63762 0.63 42.03 3915 3915 MS2 16/18 Linfeng_20130201_rIgG_7.raw Medium DVDAAYMNKVELQAK Unambiguous 8 4 P02538;P04259;P48668;H9KV51 CID 1.0000 0.0000 1 1 502 2.26 0.00 1 16 50 3 565.61823 1694.84012 -1.04 38.60 3509 3509 MS2 19/56 Linfeng_20130201_rIgG_6.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 672 2.26 0.00 0 31 50 2 602.32251 1203.63774 0.73 41.60 3817 3817 MS2 17/18 Linfeng_20130201_rIgG_6.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 455 2.24 0.00 0 14 50 2 554.27466 1107.54204 -0.82 26.05 2187 2187 MS2 14/16 Linfeng_20130201_rIgG_6.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 506 2.24 0.00 2 0 50 2 654.83093 1308.65459 0.22 21.04 1536 1536 MS2 14/18 Linfeng_20130201_rIgG_6.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 447 2.23 0.00 0 20 50 2 554.27441 1107.54155 -1.26 25.86 2113 2113 MS2 13/16 Linfeng_20130201_rIgG_4.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 367 2.21 0.00 1 55 50 2 541.80396 1082.60063 1.18 38.89 3093 3093 MS2 13/16 Linfeng_20130204_CTCF_1.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 607 2.21 0.00 0 40 6 2 602.32104 1203.63481 -1.70 41.28 3657 3657 MS2 15/18 Linfeng_20130201_rIgG_5.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 622 2.20 0.00 0 27 50 2 602.32281 1203.63835 1.24 40.96 3701 3701 MS2 15/18 Linfeng_20130201_rIgG_2.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 659 2.20 0.00 0 20 50 2 602.32208 1203.63689 0.02 42.02 3297 3297 MS2 15/18 Linfeng_20130204_CTCF_9.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 474 2.18 0.00 0 14 50 2 554.27539 1107.54350 0.50 25.38 1372 1372 MS2 11/16 Linfeng_20130204_CTCF_3.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 453 2.18 0.00 0 22 50 2 554.27472 1107.54216 -0.71 25.97 2159 2159 MS2 14/16 Linfeng_20130201_rIgG_9.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 669 2.16 0.00 0 44 50 2 602.32190 1203.63652 -0.28 41.92 3060 3060 MS2 13/18 Linfeng_20130204_CTCF_4.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 469 2.15 0.00 0 0 50 2 554.27454 1107.54180 -1.04 26.11 2174 2174 MS2 13/16 Linfeng_20130201_rIgG_9.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 433 2.15 0.00 0 32 50 2 554.27448 1107.54167 -1.15 24.76 2004 2004 MS2 14/16 Linfeng_20130201_rIgG_1.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 577 2.10 0.00 0 41 50 2 602.32159 1203.63591 -0.79 41.18 3733 3733 MS2 16/18 Linfeng_20130201_rIgG_3.raw High SGFSSVSVSR Unambiguous 1 1 P02538 CID 1.0000 0.0000 1 1 241 2.10 0.00 0 14 50 2 506.75479 1012.50231 -3.49 30.02 2197 2197 MS2 14/18 Linfeng_20130204_CTCF_1.raw High TAAENEFVTLK Unambiguous 6 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 498 2.09 0.00 0 34 50 2 611.82025 1222.63323 1.45 38.81 2937 2937 MS2 14/20 Linfeng_20130204_CTCF_7.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 492 2.08 0.00 0 23 50 2 554.27539 1107.54350 0.50 24.94 1596 1596 MS2 12/16 Linfeng_20130204_CTCF_1.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 475 2.03 0.00 0 0 50 2 554.27478 1107.54228 -0.60 25.52 1671 1671 MS2 13/16 Linfeng_20130204_CTCF_1.raw High TAAENEFVTLK Unambiguous 6 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 536 2.01 0.00 0 32 50 2 611.81970 1222.63213 0.55 38.03 3422 3422 MS2 14/20 Linfeng_20130201_rIgG_1.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 682 2.01 0.00 0 27 50 2 602.32220 1203.63713 0.23 42.21 3841 3841 MS2 14/18 Linfeng_20130201_rIgG_3.raw P04259 "Keratin, type II cytoskeletal 6B OS=Homo sapiens GN=KRT6B PE=1 SV=5 - [K2C6B_HUMAN]" 42.20 2 3 22 204 346.83 39.72 19 119 249.20 32.27 17 85 564 60.0 8.00 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High ALYDAELSQmQTHISDTSVVLSmDNNR Unambiguous 6 3 P02538;P04259;P48668 M10(Oxidation); M23(Oxidation) CID 1.0000 0.0000 1 1 260 5.99 0.00 0 0 13 3 1024.14258 3070.41318 1.25 44.05 4003 4003 MS2 38/104 Linfeng_20130201_rIgG_5.raw High ALYDAELSQmQTHISDTSVVLSmDNNR Unambiguous 6 3 P02538;P04259;P48668 M10(Oxidation); M23(Oxidation) CID 1.0000 0.0000 1 1 259 5.85 0.00 0 0 30 3 1024.14197 3070.41135 0.66 44.19 4085 4085 MS2 36/104 Linfeng_20130201_rIgG_1.raw High ALYDAELSQmQTHISDTSVVLSmDNNR Unambiguous 6 3 P02538;P04259;P48668 M10(Oxidation); M23(Oxidation) CID 1.0000 0.0000 1 1 253 5.31 0.00 0 0 50 3 1024.14099 3070.40842 -0.30 44.23 4038 4038 MS2 35/104 Linfeng_20130201_rIgG_2.raw High ALYDAELSQmQTHISDTSVVLSmDNNR Unambiguous 6 3 P02538;P04259;P48668 M10(Oxidation); M23(Oxidation) CID 1.0000 0.0000 1 1 259 5.25 0.00 0 0 50 3 1024.14197 3070.41135 0.66 44.34 4102 4102 MS2 38/104 Linfeng_20130201_rIgG_6.raw High ALYDAELSQmQTHISDTSVVLSmDNNR Unambiguous 6 3 P02538;P04259;P48668 M10(Oxidation); M23(Oxidation) CID 1.0000 0.0000 1 1 260 4.87 0.00 0 0 49 3 1024.14124 3070.40915 -0.06 44.36 4065 4065 MS2 39/104 Linfeng_20130201_rIgG_3.raw High ALYDAELSQmQTHISDTSVVLSmDNNR Unambiguous 6 3 P02538;P04259;P48668 M10(Oxidation); M23(Oxidation) CID 1.0000 0.0000 1 1 263 4.20 0.00 0 0 50 3 1024.14343 3070.41574 2.09 44.45 3336 3336 MS2 24/104 Linfeng_20130204_CTCF_6.raw High NKLEGLEDALQK Unambiguous 6 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 494 3.96 0.00 1 31 50 2 679.37103 1357.73479 1.88 40.15 2876 2876 MS2 19/22 Linfeng_20130204_CTCF_6.raw High ISIGGGScAISGGYGSR Unambiguous 6 3 P02538;P04259;P48668 C8(Carbamidomethyl) CID 1.0000 0.0000 1 1 353 3.79 0.00 0 6 50 2 799.88300 1598.75871 -0.31 36.91 2746 2746 MS2 21/32 Linfeng_20130204_CTCF_7.raw High ALYDAELSQmQTHISDTSVVLSmDNNR Unambiguous 6 3 P02538;P04259;P48668 M10(Oxidation); M23(Oxidation) CID 1.0000 0.0000 1 1 262 3.79 0.00 0 0 50 3 1024.14270 3070.41355 1.37 44.35 3612 3612 MS2 28/104 Linfeng_20130204_CTCF_2.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 511 3.68 0.00 0 1 24 2 590.30420 1179.60112 0.55 37.61 2604 2604 MS2 17/18 Linfeng_20130204_CTCF_6.raw High ISIGGGScAISGGYGSR Unambiguous 6 3 P02538;P04259;P48668 C8(Carbamidomethyl) CID 1.0000 0.0000 1 1 344 3.67 0.00 0 9 50 2 799.88281 1598.75835 -0.54 36.16 3233 3233 MS2 20/32 Linfeng_20130201_rIgG_1.raw High ALYDAELSQmQTHISDTSVVLSmDNNR Unambiguous 6 3 P02538;P04259;P48668 M10(Oxidation); M23(Oxidation) CID 1.0000 0.0000 1 1 265 3.63 0.00 0 2 27 3 1024.14221 3070.41208 0.90 44.65 3358 3358 MS2 25/104 Linfeng_20130204_CTCF_6.raw High ISIGGGScAISGGYGSR Unambiguous 6 3 P02538;P04259;P48668 C8(Carbamidomethyl) CID 1.0000 0.0000 1 1 333 3.56 0.00 0 12 50 2 799.88422 1598.76116 1.22 36.85 2547 2547 MS2 16/32 Linfeng_20130204_CTCF_3.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 371 3.54 0.00 0 5 7 2 632.35077 1263.69426 -0.09 50.01 4794 4794 MS2 18/20 Linfeng_20130201_rIgG_1.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 530 3.54 0.00 0 5 50 2 590.30426 1179.60124 0.65 36.66 2746 2746 MS2 17/18 Linfeng_20130204_CTCF_9.raw High ISIGGGScAISGGYGSR Unambiguous 6 3 P02538;P04259;P48668 C8(Carbamidomethyl) CID 1.0000 0.0000 1 1 392 3.53 0.00 0 25 50 2 799.88428 1598.76128 1.30 36.41 2842 2842 MS2 18/32 Linfeng_20130204_CTCF_1.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 449 3.52 0.00 0 14 50 2 590.30310 1179.59892 -1.31 36.82 2706 2706 MS2 16/18 Linfeng_20130204_CTCF_10.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 442 3.52 0.00 0 0 5 2 590.30518 1179.60307 2.21 36.52 2494 2494 MS2 17/18 Linfeng_20130204_CTCF_6.raw High ISIGGGScAISGGYGSR Unambiguous 6 3 P02538;P04259;P48668 C8(Carbamidomethyl) CID 1.0000 0.0000 1 1 384 3.52 0.00 0 30 50 2 799.88287 1598.75847 -0.46 37.06 2730 2730 MS2 19/32 Linfeng_20130204_CTCF_10.raw High ALYDAELSQmQTHISDTSVVLSmDNNR Unambiguous 6 3 P02538;P04259;P48668 M10(Oxidation); M23(Oxidation) CID 1.0000 0.0000 1 1 262 3.48 0.00 0 2 8 4 768.35876 3070.41323 1.27 44.24 4027 4027 MS2 36/156 Linfeng_20130201_rIgG_5.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 455 3.46 0.00 0 28 44 2 590.30347 1179.59966 -0.69 36.23 2824 2824 MS2 17/18 Linfeng_20130204_CTCF_1.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 495 3.44 0.00 0 19 7 2 590.30469 1179.60210 1.38 36.30 3053 3053 MS2 17/18 Linfeng_20130201_rIgG_5.raw High NKLEGLEDALQK Unambiguous 6 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 511 3.43 0.00 1 5 50 3 453.24884 1357.73197 -0.20 39.96 3593 3593 MS2 27/44 Linfeng_20130201_rIgG_4.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 381 3.43 0.00 0 3 7 2 632.35175 1263.69621 1.45 50.26 4722 4722 MS2 18/20 Linfeng_20130201_rIgG_2.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 496 3.41 0.00 0 36 50 2 590.30273 1179.59819 -1.93 35.61 2762 2762 MS2 17/18 Linfeng_20130204_CTCF_1.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 441 3.41 0.00 0 30 50 2 590.30334 1179.59941 -0.90 36.31 3234 3234 MS2 17/18 Linfeng_20130201_rIgG_10.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 557 3.39 0.00 2 2 50 3 436.88916 1308.65293 -1.05 21.12 1536 1536 MS2 21/36 Linfeng_20130201_rIgG_10.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 471 3.38 0.00 0 15 22 2 590.30511 1179.60295 2.10 35.43 2384 2384 MS2 17/18 Linfeng_20130204_CTCF_6.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 474 3.38 0.00 0 17 41 2 590.30353 1179.59978 -0.59 36.51 2695 2695 MS2 17/18 Linfeng_20130204_CTCF_8.raw High ISIGGGScAISGGYGSR Unambiguous 6 3 P02538;P04259;P48668 C8(Carbamidomethyl) CID 1.0000 0.0000 1 1 376 3.38 0.00 0 13 50 2 799.88348 1598.75969 0.30 36.44 3246 3246 MS2 20/32 Linfeng_20130201_rIgG_3.raw High ATGGGLSSVGGGSSTIKYTTTSSSSR Unambiguous 2 1 P04259 CID 1.0000 0.0000 1 1 507 3.36 0.00 1 30 32 3 802.72949 2406.17392 -0.19 31.21 2513 2513 MS2 34/100 Linfeng_20130201_rIgG_5.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 380 3.36 0.00 0 7 17 2 632.35144 1263.69560 0.97 50.45 4817 4817 MS2 18/20 Linfeng_20130201_rIgG_6.raw High ATGGGLSSVGGGSSTIKYTTTSSSSR Unambiguous 2 1 P04259 CID 1.0000 0.0000 1 1 502 3.36 0.00 1 13 50 3 802.73016 2406.17594 0.64 31.24 2729 2729 MS2 30/100 Linfeng_20130201_rIgG_3.raw High NKLEGLEDALQK Unambiguous 6 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 491 3.35 0.00 1 31 50 2 679.36975 1357.73223 -0.01 39.83 3580 3580 MS2 19/22 Linfeng_20130201_rIgG_4.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 364 3.35 0.00 0 0 23 2 632.35095 1263.69463 0.19 50.50 4792 4792 MS2 18/20 Linfeng_20130201_rIgG_9.raw High LLKEYQELmNVK Unambiguous 6 3 P02538;P04259;P48668 M9(Oxidation) CID 1.0000 0.0000 1 1 458 3.34 0.00 1 17 13 3 508.60922 1523.81311 -0.49 37.22 3155 3155 MS2 24/44 Linfeng_20130201_rIgG_5.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 510 3.33 0.00 0 38 50 2 590.30469 1179.60210 1.38 37.17 2575 2575 MS2 16/18 Linfeng_20130204_CTCF_4.raw High ISIGGGScAISGGYGSR Unambiguous 6 3 P02538;P04259;P48668 C8(Carbamidomethyl) CID 1.0000 0.0000 1 1 369 3.32 0.00 0 21 50 2 799.88257 1598.75786 -0.84 36.58 3261 3261 MS2 20/32 Linfeng_20130201_rIgG_10.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 370 3.30 0.00 0 1 9 2 632.35095 1263.69463 0.19 50.48 4784 4784 MS2 18/20 Linfeng_20130201_rIgG_10.raw High ISIGGGScAISGGYGSR Unambiguous 6 3 P02538;P04259;P48668 C8(Carbamidomethyl) CID 1.0000 0.0000 1 1 383 3.29 0.00 0 31 50 2 799.88397 1598.76067 0.91 36.61 3247 3247 MS2 18/32 Linfeng_20130201_rIgG_4.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 552 3.29 0.00 0 28 50 2 590.30365 1179.60002 -0.38 36.44 3341 3341 MS2 17/18 Linfeng_20130201_rIgG_7.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 369 3.29 0.00 0 13 50 2 632.35126 1263.69524 0.68 50.66 3993 3993 MS2 18/20 Linfeng_20130204_CTCF_6.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 373 3.29 0.00 0 6 18 2 632.35089 1263.69451 0.10 50.14 4276 4276 MS2 17/20 Linfeng_20130204_CTCF_1.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 412 3.29 0.00 0 4 50 2 632.35089 1263.69451 0.10 51.23 4389 4389 MS2 18/20 Linfeng_20130204_CTCF_1.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 507 3.28 0.00 0 40 50 2 590.30530 1179.60332 2.41 38.93 2743 2743 MS2 17/18 Linfeng_20130204_CTCF_6.raw High VLDTKWTLLQEQGTK Unambiguous 7 3 P13647;P04259;P48668 CID 1.0000 0.0000 1 1 439 3.27 0.00 1 30 11 3 587.32513 1759.96085 1.08 44.85 4102 4102 MS2 23/56 Linfeng_20130201_rIgG_5.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 544 3.26 0.00 2 7 50 3 436.88925 1308.65320 -0.84 21.06 1533 1533 MS2 20/36 Linfeng_20130201_rIgG_3.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 546 3.25 0.00 2 8 50 3 436.88937 1308.65357 -0.56 20.77 1473 1473 MS2 19/36 Linfeng_20130201_rIgG_2.raw High NKLEGLEDALQK Unambiguous 6 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 537 3.25 0.00 1 9 50 3 453.25003 1357.73554 2.43 40.13 2874 2874 MS2 21/44 Linfeng_20130204_CTCF_6.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 555 3.24 0.00 0 18 50 2 590.30396 1179.60063 0.14 35.31 2687 2687 MS2 17/18 Linfeng_20130204_CTCF_2.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 404 3.24 0.00 0 9 28 2 632.35107 1263.69487 0.39 50.67 4337 4337 MS2 17/20 Linfeng_20130204_CTCF_8.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 391 3.23 0.00 0 9 21 2 632.35101 1263.69475 0.29 50.32 4757 4757 MS2 18/20 Linfeng_20130201_rIgG_4.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 563 3.21 0.00 0 52 50 2 590.30383 1179.60039 -0.07 35.07 2708 2708 MS2 17/18 Linfeng_20130204_CTCF_1.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 453 3.19 0.00 0 16 50 2 590.30328 1179.59929 -1.00 37.39 2793 2793 MS2 17/18 Linfeng_20130204_CTCF_7.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 412 3.19 0.00 0 16 20 2 632.35083 1263.69438 0.00 51.10 4927 4927 MS2 18/20 Linfeng_20130201_rIgG_1.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 384 3.19 0.00 0 0 28 2 632.35083 1263.69438 0.00 50.46 4287 4287 MS2 18/20 Linfeng_20130204_CTCF_2.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 543 3.18 0.00 2 3 50 3 436.88934 1308.65348 -0.63 21.08 1503 1503 MS2 19/36 Linfeng_20130201_rIgG_4.raw High LLKEYQELmNVK Unambiguous 6 3 P02538;P04259;P48668 M9(Oxidation) CID 1.0000 0.0000 1 1 449 3.17 0.00 1 14 50 2 762.41217 1523.81706 2.11 37.45 3181 3181 MS2 17/22 Linfeng_20130201_rIgG_5.raw High LLKEYQELMNVK Unambiguous 6 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 429 3.17 0.00 1 5 20 3 503.27826 1507.82022 0.85 45.78 3479 3479 MS2 22/44 Linfeng_20130204_CTCF_6.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 546 3.17 0.00 0 24 50 2 590.30383 1179.60039 -0.07 34.85 3101 3101 MS2 17/18 Linfeng_20130201_rIgG_1.raw High SRAEAESWYQTKYEELQITAGR Unambiguous 2 1 P04259 CID 1.0000 0.0000 1 1 487 3.17 0.00 2 0 40 3 872.76233 2616.27243 1.33 45.39 3438 3438 MS2 22/84 Linfeng_20130204_CTCF_6.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 369 3.16 0.00 0 3 15 2 632.35052 1263.69377 -0.48 50.69 4239 4239 MS2 18/20 Linfeng_20130204_CTCF_7.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 551 3.16 0.00 0 30 50 2 590.30389 1179.60051 0.03 35.79 3180 3180 MS2 17/18 Linfeng_20130201_rIgG_3.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 558 3.14 0.00 0 45 50 2 590.30396 1179.60063 0.14 36.05 2462 2462 MS2 17/18 Linfeng_20130204_CTCF_4.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 536 3.14 0.00 0 37 50 2 590.30560 1179.60393 2.93 39.90 2849 2849 MS2 17/18 Linfeng_20130204_CTCF_6.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 368 3.14 0.00 1 8 3 2 541.80359 1082.59990 0.50 38.24 3272 3272 MS2 15/16 Linfeng_20130201_rIgG_5.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 573 3.14 0.00 0 31 48 2 590.30359 1179.59990 -0.48 36.41 3210 3210 MS2 17/18 Linfeng_20130201_rIgG_8.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 360 3.13 0.00 0 5 50 2 632.35236 1263.69744 2.42 50.69 3979 3979 MS2 18/20 Linfeng_20130204_CTCF_4.raw High DVDAAYMNKVELQAK Unambiguous 8 4 P02538;P04259;P48668;H9KV51 CID 1.0000 0.0000 1 1 513 3.13 0.00 1 5 37 3 565.61987 1694.84507 1.88 38.47 2694 2694 MS2 20/56 Linfeng_20130204_CTCF_6.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 529 3.11 0.00 2 1 50 3 436.88965 1308.65439 0.07 21.08 1536 1536 MS2 20/36 Linfeng_20130201_rIgG_9.raw High AEAESWYQTKYEELQITAGR Unambiguous 2 1 P04259 CID 1.0000 0.0000 1 1 489 3.11 0.00 1 0 19 3 791.71777 2373.13877 1.25 47.85 3695 3695 MS2 16/76 Linfeng_20130204_CTCF_6.raw High NKLEGLEDALQK Unambiguous 6 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 495 3.10 0.00 1 14 41 2 679.37000 1357.73271 0.35 39.76 3466 3466 MS2 17/22 Linfeng_20130201_rIgG_5.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 562 3.10 0.00 0 18 50 2 590.30365 1179.60002 -0.38 36.23 2678 2678 MS2 17/18 Linfeng_20130204_CTCF_7.raw High VLDTKWTLLQEQGTK Unambiguous 7 3 P13647;P04259;P48668 CID 1.0000 0.0000 1 1 439 3.09 0.00 1 18 15 3 587.32489 1759.96012 0.66 45.13 3410 3410 MS2 22/56 Linfeng_20130204_CTCF_6.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 552 3.08 0.00 0 35 50 2 590.30396 1179.60063 0.14 36.10 3205 3205 MS2 17/18 Linfeng_20130201_rIgG_2.raw High ATGGGLSSVGGGSSTIKYTTTSSSSR Unambiguous 2 1 P04259 CID 1.0000 0.0000 1 1 519 3.08 0.00 1 37 50 3 802.73059 2406.17722 1.18 31.35 2840 2840 MS2 27/100 Linfeng_20130201_rIgG_7.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 533 3.08 0.00 2 4 50 3 436.88953 1308.65403 -0.21 21.39 1584 1584 MS2 21/36 Linfeng_20130201_rIgG_6.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 561 3.07 0.00 0 33 50 2 590.30383 1179.60039 -0.07 35.28 3113 3113 MS2 16/18 Linfeng_20130201_rIgG_4.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 449 3.07 0.00 0 47 50 2 590.30353 1179.59978 -0.59 34.89 3085 3085 MS2 17/18 Linfeng_20130201_rIgG_2.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 338 3.07 0.00 0 13 50 2 632.35077 1263.69426 -0.09 50.61 3969 3969 MS2 18/20 Linfeng_20130204_CTCF_3.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 442 3.07 0.00 0 2 50 2 554.27460 1107.54192 -0.93 25.34 1393 1393 MS2 14/16 Linfeng_20130204_CTCF_6.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 552 3.06 0.00 0 35 50 2 590.30402 1179.60076 0.24 36.87 3289 3289 MS2 16/18 Linfeng_20130201_rIgG_3.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 562 3.06 0.00 0 47 50 2 590.30377 1179.60027 -0.17 36.22 3208 3208 MS2 17/18 Linfeng_20130201_rIgG_4.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 311 3.05 0.00 1 21 50 2 541.80347 1082.59966 0.27 38.69 3473 3473 MS2 15/16 Linfeng_20130201_rIgG_3.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 389 3.05 0.00 0 4 9 2 632.35114 1263.69499 0.48 50.37 4753 4753 MS2 18/20 Linfeng_20130201_rIgG_3.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 343 3.04 0.00 1 56 50 2 541.80585 1082.60442 4.67 39.54 2816 2816 MS2 13/16 Linfeng_20130204_CTCF_4.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 565 3.04 0.00 0 36 50 2 590.30402 1179.60076 0.24 35.66 3183 3183 MS2 17/18 Linfeng_20130201_rIgG_1.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 366 3.02 0.00 1 17 36 2 541.80377 1082.60027 0.84 38.78 3468 3468 MS2 15/16 Linfeng_20130201_rIgG_4.raw High ISIGGGScAISGGYGSR Unambiguous 6 3 P02538;P04259;P48668 C8(Carbamidomethyl) CID 1.0000 0.0000 1 1 357 3.02 0.00 0 26 50 2 799.88312 1598.75896 -0.15 36.23 3218 3218 MS2 19/32 Linfeng_20130201_rIgG_2.raw High LALDVEIATYRK Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 301 3.02 0.00 1 25 23 2 696.39807 1391.78887 -0.35 44.32 4037 4037 MS2 17/22 Linfeng_20130201_rIgG_5.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 502 3.02 0.00 0 34 50 2 590.30530 1179.60332 2.41 41.23 2994 2994 MS2 16/18 Linfeng_20130204_CTCF_6.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 648 2.99 0.00 0 1 5 2 602.32263 1203.63799 0.94 42.65 3143 3143 MS2 17/18 Linfeng_20130204_CTCF_6.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 519 2.98 0.00 0 50 50 2 590.30475 1179.60222 1.48 35.96 2457 2457 MS2 15/18 Linfeng_20130204_CTCF_3.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 563 2.97 0.00 0 50 50 2 590.30402 1179.60076 0.24 35.86 3203 3203 MS2 16/18 Linfeng_20130201_rIgG_1.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 442 2.96 0.00 0 7 50 2 554.27441 1107.54155 -1.26 26.19 1475 1475 MS2 14/16 Linfeng_20130204_CTCF_6.raw High TAAENEFVTLK Unambiguous 6 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 515 2.95 0.00 0 9 37 2 611.81964 1222.63201 0.45 38.68 2716 2716 MS2 15/20 Linfeng_20130204_CTCF_6.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 448 2.93 0.00 0 46 50 2 590.30353 1179.59978 -0.59 35.23 3124 3124 MS2 17/18 Linfeng_20130201_rIgG_3.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 485 2.92 0.00 0 41 50 2 590.30524 1179.60320 2.31 36.93 3312 3312 MS2 17/18 Linfeng_20130201_rIgG_1.raw High NLDLDSIIAEVK Unambiguous 13 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 586 2.92 0.00 0 22 40 2 665.36633 1329.72539 -0.53 50.96 4023 4023 MS2 18/22 Linfeng_20130204_CTCF_6.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 361 2.92 0.00 0 4 50 2 632.35059 1263.69390 -0.38 50.96 4291 4291 MS2 17/20 Linfeng_20130204_CTCF_9.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 352 2.92 0.00 1 19 50 2 541.80304 1082.59880 -0.52 38.29 3426 3426 MS2 15/16 Linfeng_20130201_rIgG_2.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 581 2.92 0.00 0 16 50 2 602.32123 1203.63518 -1.40 41.17 3330 3330 MS2 16/18 Linfeng_20130204_CTCF_1.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 429 2.90 0.00 0 28 8 2 632.35022 1263.69316 -0.96 50.11 4779 4779 MS2 18/20 Linfeng_20130201_rIgG_5.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 330 2.90 0.00 1 11 50 2 541.80341 1082.59953 0.16 38.46 3467 3467 MS2 15/16 Linfeng_20130201_rIgG_1.raw High LALDVEIATYRK Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 297 2.89 0.00 1 40 50 2 696.39825 1391.78923 -0.09 44.41 4063 4063 MS2 17/22 Linfeng_20130201_rIgG_4.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 470 2.89 0.00 0 28 50 2 590.30286 1179.59844 -1.73 36.06 3220 3220 MS2 15/18 Linfeng_20130201_rIgG_9.raw High ATGGGLSSVGGGSSTIKYTTTSSSSR Unambiguous 2 1 P04259 CID 1.0000 0.0000 1 1 481 2.89 0.00 1 25 50 3 802.72809 2406.16971 -1.94 31.28 2719 2719 MS2 28/100 Linfeng_20130201_rIgG_4.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 391 2.88 0.00 0 4 27 2 632.35120 1263.69512 0.58 50.42 4851 4851 MS2 18/20 Linfeng_20130201_rIgG_7.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 413 2.86 0.00 0 16 50 2 632.35260 1263.69792 2.80 51.92 4119 4119 MS2 16/20 Linfeng_20130204_CTCF_6.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 448 2.83 0.00 0 43 50 2 590.30341 1179.59953 -0.79 36.24 3270 3270 MS2 17/18 Linfeng_20130201_rIgG_6.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 571 2.83 0.00 0 51 50 2 590.30414 1179.60100 0.45 35.85 3003 3003 MS2 17/18 Linfeng_20130201_rIgG_5.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 325 2.81 0.00 1 10 50 2 541.80310 1082.59892 -0.40 38.88 3045 3045 MS2 15/16 Linfeng_20130204_CTCF_2.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 450 2.80 0.00 0 0 16 2 632.35016 1263.69304 -1.06 50.43 4886 4886 MS2 17/20 Linfeng_20130201_rIgG_8.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 353 2.79 0.00 1 35 16 2 541.80286 1082.59844 -0.85 38.84 3353 3353 MS2 15/16 Linfeng_20130201_rIgG_5.raw High AEAESWYQTKYEELQITAGR Unambiguous 2 1 P04259 CID 1.0000 0.0000 1 1 485 2.78 0.00 1 2 19 3 791.72156 2373.15012 6.03 47.60 4441 4441 MS2 18/76 Linfeng_20130201_rIgG_9.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 657 2.78 0.00 0 6 50 2 602.32220 1203.63713 0.23 41.80 3396 3396 MS2 15/18 Linfeng_20130204_CTCF_1.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 370 2.76 0.00 1 11 17 2 541.80353 1082.59978 0.39 39.08 2759 2759 MS2 15/16 Linfeng_20130204_CTCF_6.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 657 2.74 0.00 0 7 17 2 602.32214 1203.63701 0.12 41.62 3035 3035 MS2 16/18 Linfeng_20130204_CTCF_6.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 677 2.74 0.00 0 28 50 2 602.32190 1203.63652 -0.28 41.92 3262 3262 MS2 16/18 Linfeng_20130204_CTCF_7.raw High NKLEGLEDALQK Unambiguous 6 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 521 2.73 0.00 1 20 50 3 453.24881 1357.73188 -0.27 40.09 3172 3172 MS2 20/44 Linfeng_20130204_CTCF_2.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 508 2.72 0.00 0 53 50 2 590.30420 1179.60112 0.55 35.37 2950 2950 MS2 17/18 Linfeng_20130201_rIgG_5.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 339 2.71 0.00 1 0 17 2 541.80212 1082.59697 -2.21 38.74 3340 3340 MS2 15/16 Linfeng_20130201_rIgG_5.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 370 2.71 0.00 1 33 50 2 541.80371 1082.60015 0.72 39.05 3606 3606 MS2 14/16 Linfeng_20130201_rIgG_7.raw High RGFSANSAR Unambiguous 4 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 371 2.70 0.00 1 11 50 2 483.24899 965.49071 -0.51 16.73 923 923 MS2 15/16 Linfeng_20130201_rIgG_5.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 408 2.70 0.00 0 30 38 2 632.35114 1263.69499 0.48 51.32 4875 4875 MS2 17/20 Linfeng_20130201_rIgG_4.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 358 2.68 0.00 1 50 50 2 541.80542 1082.60356 3.88 39.43 3002 3002 MS2 15/16 Linfeng_20130204_CTCF_7.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 463 2.68 0.00 0 0 50 2 554.27625 1107.54521 2.04 26.06 2157 2157 MS2 14/16 Linfeng_20130201_rIgG_10.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 507 2.68 0.00 0 16 50 2 554.27521 1107.54314 0.17 25.15 1911 1911 MS2 14/16 Linfeng_20130201_rIgG_5.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 445 2.67 0.00 0 34 50 2 590.30347 1179.59966 -0.69 36.32 3245 3245 MS2 16/18 Linfeng_20130201_rIgG_9.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 367 2.67 0.00 1 35 50 2 541.80475 1082.60222 2.64 39.63 3049 3049 MS2 15/16 Linfeng_20130204_CTCF_9.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 565 2.67 0.00 0 41 50 2 590.30402 1179.60076 0.24 35.99 3245 3245 MS2 17/18 Linfeng_20130201_rIgG_6.raw High RGFSANSAR Unambiguous 4 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 374 2.66 0.00 1 5 50 2 483.24878 965.49028 -0.95 16.19 855 855 MS2 13/16 Linfeng_20130201_rIgG_5.raw High SRAEAESWYQTK Unambiguous 7 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 329 2.65 0.00 1 12 50 3 485.89960 1455.68424 -1.44 28.31 1680 1680 MS2 17/44 Linfeng_20130204_CTCF_6.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 393 2.64 0.00 0 21 50 2 632.35425 1263.70122 5.41 51.62 4404 4404 MS2 15/20 Linfeng_20130204_CTCF_2.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 419 2.63 0.00 0 0 31 2 632.34979 1263.69231 -1.64 51.13 4245 4245 MS2 17/20 Linfeng_20130204_CTCF_10.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 353 2.62 0.00 1 15 15 2 541.80292 1082.59856 -0.74 38.71 3336 3336 MS2 15/16 Linfeng_20130201_rIgG_5.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 367 2.61 0.00 1 28 50 2 541.80426 1082.60124 1.74 39.63 2995 2995 MS2 15/16 Linfeng_20130204_CTCF_10.raw High NKLEGLEDALQK Unambiguous 6 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 477 2.60 0.00 1 53 50 2 679.36981 1357.73235 0.08 39.29 3557 3557 MS2 18/22 Linfeng_20130201_rIgG_1.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 563 2.59 0.00 0 64 50 2 590.30414 1179.60100 0.45 35.40 3187 3187 MS2 17/18 Linfeng_20130201_rIgG_6.raw High VRAEEREQIK Unambiguous 7 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 529 2.58 0.00 2 30 50 3 419.90186 1257.69101 -0.02 16.00 835 835 MS2 21/36 Linfeng_20130201_rIgG_5.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 356 2.58 0.00 1 19 47 2 541.80518 1082.60307 3.43 40.09 2869 2869 MS2 15/16 Linfeng_20130204_CTCF_6.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 509 2.56 0.00 0 47 50 2 590.30463 1179.60198 1.28 37.12 3358 3358 MS2 17/18 Linfeng_20130201_rIgG_6.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 465 2.56 0.00 0 38 50 2 590.30328 1179.59929 -1.00 37.04 3307 3307 MS2 15/18 Linfeng_20130201_rIgG_10.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 536 2.55 0.00 2 18 50 3 436.88947 1308.65384 -0.35 20.77 1478 1478 MS2 18/36 Linfeng_20130201_rIgG_1.raw High LLKEYQELmNVK Unambiguous 6 3 P02538;P04259;P48668 M9(Oxidation) CID 1.0000 0.0000 1 1 454 2.55 0.00 1 3 50 3 508.61029 1523.81632 1.62 37.75 2618 2618 MS2 12/44 Linfeng_20130204_CTCF_6.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 325 2.54 0.00 1 26 41 2 541.80322 1082.59917 -0.18 38.91 3499 3499 MS2 15/16 Linfeng_20130201_rIgG_10.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 534 2.54 0.00 2 2 50 3 436.88959 1308.65421 -0.07 21.58 1010 1010 MS2 19/36 Linfeng_20130204_CTCF_6.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 509 2.53 0.00 0 38 50 2 590.30457 1179.60185 1.17 37.43 3329 3329 MS2 17/18 Linfeng_20130201_rIgG_4.raw High SLYGLGGSKR Unambiguous 6 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 375 2.52 0.00 1 23 50 2 519.29010 1037.57292 -0.90 28.53 2249 2249 MS2 14/18 Linfeng_20130201_rIgG_5.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 527 2.52 0.00 2 41 50 3 436.88953 1308.65403 -0.21 19.76 1340 1340 MS2 15/36 Linfeng_20130201_rIgG_2.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 460 2.52 0.00 0 20 50 2 554.27435 1107.54143 -1.37 25.94 2145 2145 MS2 14/16 Linfeng_20130201_rIgG_3.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 585 2.51 0.00 0 22 43 2 602.32166 1203.63603 -0.69 42.15 3266 3266 MS2 16/18 Linfeng_20130204_CTCF_10.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 676 2.51 0.00 0 26 19 2 602.32172 1203.63616 -0.59 41.46 3752 3752 MS2 17/18 Linfeng_20130201_rIgG_4.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 325 2.49 0.00 1 33 50 2 541.80322 1082.59917 -0.18 39.27 2988 2988 MS2 15/16 Linfeng_20130204_CTCF_8.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 458 2.48 0.00 0 0 50 2 554.27472 1107.54216 -0.71 25.66 1686 1686 MS2 14/16 Linfeng_20130204_CTCF_1.raw High RGFSANSAR Unambiguous 4 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 366 2.47 0.00 1 21 50 2 483.24884 965.49040 -0.83 16.88 967 967 MS2 10/16 Linfeng_20130201_rIgG_6.raw Medium NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 528 2.47 0.00 2 54 50 3 436.88983 1308.65494 0.49 20.07 1370 1370 MS2 19/36 Linfeng_20130201_rIgG_4.raw High ISIGGGScAISGGYGSR Unambiguous 6 3 P02538;P04259;P48668 C8(Carbamidomethyl) CID 1.0000 0.0000 1 1 397 2.44 0.00 0 0 50 2 799.88300 1598.75871 -0.31 36.86 2841 2841 MS2 12/32 Linfeng_20130204_CTCF_2.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 605 2.44 0.00 0 33 50 2 602.32281 1203.63835 1.24 41.68 3039 3039 MS2 16/18 Linfeng_20130204_CTCF_3.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 499 2.43 0.00 0 0 50 2 554.27533 1107.54338 0.39 25.75 2120 2120 MS2 14/16 Linfeng_20130201_rIgG_1.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 674 2.43 0.00 0 30 50 2 602.32196 1203.63664 -0.18 41.37 3755 3755 MS2 16/18 Linfeng_20130201_rIgG_10.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 600 2.42 0.00 0 35 50 2 602.32300 1203.63872 1.54 42.11 3080 3080 MS2 14/18 Linfeng_20130204_CTCF_4.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 524 2.41 0.00 2 4 50 2 654.82965 1308.65203 -1.74 20.78 1491 1491 MS2 14/18 Linfeng_20130201_rIgG_10.raw Medium ATGGGLSSVGGGSSTIKYTTTSSSSR Unambiguous 2 1 P04259 CID 1.0000 0.0000 1 1 513 2.40 0.00 1 32 50 3 802.72986 2406.17502 0.26 31.37 2746 2746 MS2 18/100 Linfeng_20130201_rIgG_10.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 451 2.40 0.00 0 48 50 2 590.30316 1179.59905 -1.21 37.23 2585 2585 MS2 13/18 Linfeng_20130204_CTCF_3.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 506 2.39 0.00 0 9 50 2 554.27521 1107.54314 0.17 25.40 1569 1569 MS2 13/16 Linfeng_20130204_CTCF_7.raw High YEELQITAGR Unambiguous 3 2 P04264;P04259 CID 1.0000 0.0000 1 1 454 2.37 0.00 0 39 50 2 590.30286 1179.59844 -1.73 35.78 3173 3173 MS2 16/18 Linfeng_20130201_rIgG_2.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 309 2.37 0.00 1 17 50 2 541.80347 1082.59966 0.27 39.60 3561 3561 MS2 12/16 Linfeng_20130201_rIgG_2.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 400 2.36 0.00 0 24 50 2 632.34979 1263.69231 -1.64 57.77 5133 5133 MS2 15/20 Linfeng_20130204_CTCF_1.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 437 2.36 0.00 0 0 50 2 554.27509 1107.54289 -0.05 25.62 1681 1681 MS2 13/16 Linfeng_20130204_CTCF_1.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 367 2.36 0.00 1 47 29 2 541.80359 1082.59990 0.50 39.12 3388 3388 MS2 13/16 Linfeng_20130201_rIgG_5.raw High RGFSANSAR Unambiguous 4 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 373 2.35 0.00 1 8 50 2 483.24847 965.48967 -1.58 16.85 953 953 MS2 13/16 Linfeng_20130201_rIgG_9.raw Medium NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 528 2.34 0.00 2 6 50 3 436.88968 1308.65448 0.14 21.24 1550 1550 MS2 17/36 Linfeng_20130201_rIgG_8.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 344 2.34 0.00 1 29 50 2 541.80499 1082.60271 3.09 39.44 2810 2810 MS2 14/16 Linfeng_20130204_CTCF_3.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 367 2.33 0.00 1 53 50 2 541.80389 1082.60051 1.06 39.10 3561 3561 MS2 14/16 Linfeng_20130201_rIgG_6.raw Medium NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 528 2.32 0.00 2 58 50 3 436.88989 1308.65512 0.63 20.24 1360 1360 MS2 16/36 Linfeng_20130201_rIgG_5.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 491 2.32 0.00 0 33 50 2 554.27655 1107.54582 2.59 25.94 2205 2205 MS2 14/16 Linfeng_20130201_rIgG_7.raw Medium NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 560 2.31 0.00 2 40 50 3 436.89014 1308.65586 1.19 20.76 1421 1421 MS2 18/36 Linfeng_20130201_rIgG_5.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 461 2.27 0.00 0 29 50 2 554.27411 1107.54094 -1.81 26.16 2014 2014 MS2 14/16 Linfeng_20130201_rIgG_5.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 493 2.27 0.00 0 11 50 2 554.27539 1107.54350 0.50 25.99 1456 1456 MS2 12/16 Linfeng_20130204_CTCF_6.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 513 2.27 0.00 2 11 50 2 654.83185 1308.65642 1.62 21.17 967 967 MS2 14/18 Linfeng_20130204_CTCF_6.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 354 2.27 0.00 1 19 50 2 541.80298 1082.59868 -0.63 39.96 3606 3606 MS2 12/16 Linfeng_20130201_rIgG_3.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 674 2.26 0.00 0 15 49 2 602.32257 1203.63786 0.83 41.40 3307 3307 MS2 16/18 Linfeng_20130204_CTCF_2.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 683 2.26 0.00 0 25 35 2 602.32245 1203.63762 0.63 42.03 3915 3915 MS2 16/18 Linfeng_20130201_rIgG_7.raw Medium DVDAAYMNKVELQAK Unambiguous 8 4 P02538;P04259;P48668;H9KV51 CID 1.0000 0.0000 1 1 502 2.26 0.00 1 16 50 3 565.61823 1694.84012 -1.04 38.60 3509 3509 MS2 19/56 Linfeng_20130201_rIgG_6.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 672 2.26 0.00 0 31 50 2 602.32251 1203.63774 0.73 41.60 3817 3817 MS2 17/18 Linfeng_20130201_rIgG_6.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 455 2.24 0.00 0 14 50 2 554.27466 1107.54204 -0.82 26.05 2187 2187 MS2 14/16 Linfeng_20130201_rIgG_6.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 506 2.24 0.00 2 0 50 2 654.83093 1308.65459 0.22 21.04 1536 1536 MS2 14/18 Linfeng_20130201_rIgG_6.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 447 2.23 0.00 0 20 50 2 554.27441 1107.54155 -1.26 25.86 2113 2113 MS2 13/16 Linfeng_20130201_rIgG_4.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 367 2.21 0.00 1 55 50 2 541.80396 1082.60063 1.18 38.89 3093 3093 MS2 13/16 Linfeng_20130204_CTCF_1.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 607 2.21 0.00 0 40 6 2 602.32104 1203.63481 -1.70 41.28 3657 3657 MS2 15/18 Linfeng_20130201_rIgG_5.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 622 2.20 0.00 0 27 50 2 602.32281 1203.63835 1.24 40.96 3701 3701 MS2 15/18 Linfeng_20130201_rIgG_2.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 659 2.20 0.00 0 20 50 2 602.32208 1203.63689 0.02 42.02 3297 3297 MS2 15/18 Linfeng_20130204_CTCF_9.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 474 2.18 0.00 0 14 50 2 554.27539 1107.54350 0.50 25.38 1372 1372 MS2 11/16 Linfeng_20130204_CTCF_3.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 453 2.18 0.00 0 22 50 2 554.27472 1107.54216 -0.71 25.97 2159 2159 MS2 14/16 Linfeng_20130201_rIgG_9.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 669 2.16 0.00 0 44 50 2 602.32190 1203.63652 -0.28 41.92 3060 3060 MS2 13/18 Linfeng_20130204_CTCF_4.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 469 2.15 0.00 0 0 50 2 554.27454 1107.54180 -1.04 26.11 2174 2174 MS2 13/16 Linfeng_20130201_rIgG_9.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 433 2.15 0.00 0 32 50 2 554.27448 1107.54167 -1.15 24.76 2004 2004 MS2 14/16 Linfeng_20130201_rIgG_1.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 577 2.10 0.00 0 41 50 2 602.32159 1203.63591 -0.79 41.18 3733 3733 MS2 16/18 Linfeng_20130201_rIgG_3.raw High TAAENEFVTLK Unambiguous 6 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 498 2.09 0.00 0 34 50 2 611.82025 1222.63323 1.45 38.81 2937 2937 MS2 14/20 Linfeng_20130204_CTCF_7.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 492 2.08 0.00 0 23 50 2 554.27539 1107.54350 0.50 24.94 1596 1596 MS2 12/16 Linfeng_20130204_CTCF_1.raw High AQYEEIAQR Unambiguous 8 4 P35908;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 475 2.03 0.00 0 0 50 2 554.27478 1107.54228 -0.60 25.52 1671 1671 MS2 13/16 Linfeng_20130204_CTCF_1.raw High TAAENEFVTLK Unambiguous 6 3 P02538;P04259;P48668 CID 1.0000 0.0000 1 1 536 2.01 0.00 0 32 50 2 611.81970 1222.63213 0.55 38.03 3422 3422 MS2 14/20 Linfeng_20130201_rIgG_1.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 682 2.01 0.00 0 27 50 2 602.32220 1203.63713 0.23 42.21 3841 3841 MS2 14/18 Linfeng_20130201_rIgG_3.raw P13647 "Keratin, type II cytoskeletal 5 OS=Homo sapiens GN=KRT5 PE=1 SV=3 - [K2C5_HUMAN]" 40.00 6 17 24 202 353.99 33.39 20 120 245.57 33.39 21 82 590 62.3 7.74 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High TEAESWYQTKYEELQQTAGR Unambiguous 4 1 P13647 CID 1.0000 0.0000 1 1 288 5.36 0.00 1 5 23 3 806.71301 2418.12448 1.49 45.61 4193 4193 MS2 38/76 Linfeng_20130201_rIgG_4.raw High SRTEAESWYQTKYEELQQTAGR Unambiguous 4 1 P13647 CID 1.0000 0.0000 1 1 414 5.11 0.00 2 28 28 3 887.75720 2661.25705 1.14 43.53 3237 3237 MS2 26/84 Linfeng_20130204_CTCF_6.raw High TEAESWYQTKYEELQQTAGR Unambiguous 4 1 P13647 CID 1.0000 0.0000 1 1 292 5.02 0.00 1 5 13 3 806.71246 2418.12284 0.81 45.56 4192 4192 MS2 37/76 Linfeng_20130201_rIgG_3.raw High TEAESWYQTKYEELQQTAGR Unambiguous 4 1 P13647 CID 1.0000 0.0000 1 1 269 4.72 0.00 1 9 33 3 806.71118 2418.11899 -0.78 45.58 4206 4206 MS2 38/76 Linfeng_20130201_rIgG_9.raw High TEAESWYQTKYEELQQTAGR Unambiguous 4 1 P13647 CID 1.0000 0.0000 1 1 285 4.71 0.00 1 2 13 3 806.71228 2418.12229 0.58 45.63 3747 3747 MS2 29/76 Linfeng_20130204_CTCF_2.raw High TEAESWYQTKYEELQQTAGR Unambiguous 4 1 P13647 CID 1.0000 0.0000 1 1 287 4.62 0.00 1 22 13 3 806.71320 2418.12503 1.72 45.46 4180 4180 MS2 34/76 Linfeng_20130201_rIgG_5.raw High TEAESWYQTKYEELQQTAGR Unambiguous 4 1 P13647 CID 1.0000 0.0000 1 1 277 4.59 0.00 1 7 31 3 806.71167 2418.12046 -0.18 45.43 4164 4164 MS2 37/76 Linfeng_20130201_rIgG_2.raw High TEAESWYQTKYEELQQTAGR Unambiguous 4 1 P13647 CID 1.0000 0.0000 1 1 289 4.51 0.00 1 7 31 3 806.71289 2418.12412 1.34 46.11 3698 3698 MS2 26/76 Linfeng_20130204_CTCF_10.raw High TEAESWYQTKYEELQQTAGR Unambiguous 4 1 P13647 CID 1.0000 0.0000 1 1 291 4.47 0.00 1 1 15 3 806.71350 2418.12595 2.10 45.74 3475 3475 MS2 29/76 Linfeng_20130204_CTCF_6.raw High mFFDAELSQmQTHVSDTSVVLSmDNNR Unambiguous 4 1 P13647 M1(Oxidation); M10(Oxidation); M23(Oxidation) CID 1.0000 0.0000 1 1 117 4.45 0.00 0 10 36 3 1050.79749 3150.37790 -1.12 46.64 4310 4310 MS2 28/104 Linfeng_20130201_rIgG_3.raw High VDALmDEINFmK Unambiguous 3 1 P13647 M5(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 255 4.06 0.00 0 19 36 2 729.33722 1457.66716 1.37 44.08 3486 3486 MS2 18/22 Linfeng_20130204_CTCF_7.raw High mFFDAELSQmQTHVSDTSVVLSmDNNR Unambiguous 4 1 P13647 M1(Oxidation); M10(Oxidation); M23(Oxidation) CID 1.0000 0.0000 1 1 131 3.92 0.00 0 19 46 3 1050.79956 3150.38413 0.86 46.80 4328 4328 MS2 23/104 Linfeng_20130201_rIgG_3.raw High VDALmDEINFmK Unambiguous 3 1 P13647 M5(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 233 3.82 0.00 0 11 50 2 729.33606 1457.66484 -0.23 43.47 3565 3565 MS2 19/22 Linfeng_20130204_CTCF_1.raw High VDALmDEINFmK Unambiguous 3 1 P13647 M5(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 249 3.74 0.00 0 28 50 2 729.33679 1457.66631 0.78 43.94 3281 3281 MS2 19/22 Linfeng_20130204_CTCF_6.raw High TEAESWYQTKYEELQQTAGR Unambiguous 4 1 P13647 CID 1.0000 0.0000 1 1 294 3.72 0.00 1 2 50 3 806.71283 2418.12394 1.26 46.43 3548 3548 MS2 24/76 Linfeng_20130204_CTCF_6.raw High NKLAELEEALQK Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 543 3.63 0.00 1 0 15 3 462.59189 1385.76111 -1.75 46.63 4326 4326 MS2 22/44 Linfeng_20130201_rIgG_5.raw High SFSTASAITPSVSR Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 501 3.63 0.00 0 35 50 2 705.86450 1410.72173 -0.47 35.50 2706 2706 MS2 19/26 Linfeng_20130204_CTCF_2.raw High VDALmDEINFmK Unambiguous 3 1 P13647 M5(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 240 3.60 0.00 0 23 50 2 729.33643 1457.66557 0.28 43.80 3555 3555 MS2 19/22 Linfeng_20130204_CTCF_2.raw High VDALmDEINFmK Unambiguous 3 1 P13647 M5(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 260 3.59 0.00 0 39 50 2 729.33698 1457.66667 1.03 44.01 3277 3277 MS2 18/22 Linfeng_20130204_CTCF_3.raw High SFSTASAITPSVSR Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 470 3.59 0.00 0 8 42 2 705.86584 1410.72441 1.43 35.67 2408 2408 MS2 20/26 Linfeng_20130204_CTCF_6.raw High VDALmDEINFmK Unambiguous 3 1 P13647 M5(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 243 3.55 0.00 0 22 49 2 729.33624 1457.66521 0.03 43.68 3995 3995 MS2 19/22 Linfeng_20130201_rIgG_10.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 371 3.54 0.00 0 5 7 2 632.35077 1263.69426 -0.09 50.01 4794 4794 MS2 18/20 Linfeng_20130201_rIgG_1.raw High VDALmDEINFMK Unambiguous 3 1 P13647 M5(Oxidation) CID 1.0000 0.0000 1 1 277 3.53 0.00 0 12 50 2 721.33887 1441.67046 0.14 51.41 4870 4870 MS2 20/22 Linfeng_20130201_rIgG_3.raw High YEELQQTAGR Unambiguous 4 1 P13647 CID 1.0000 0.0000 1 1 334 3.53 0.00 0 24 50 2 597.79071 1194.57414 -0.70 23.47 1212 1212 MS2 16/18 Linfeng_20130204_CTCF_6.raw High VDALmDEINFmK Unambiguous 3 1 P13647 M5(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 249 3.50 0.00 0 27 50 2 729.33673 1457.66619 0.70 43.86 4051 4051 MS2 19/22 Linfeng_20130201_rIgG_6.raw High VDALmDEINFmK Unambiguous 3 1 P13647 M5(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 245 3.48 0.00 0 8 50 2 729.33667 1457.66606 0.61 43.27 3984 3984 MS2 18/22 Linfeng_20130201_rIgG_1.raw High SFSTASAITPSVSR Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 452 3.47 0.00 0 8 50 2 705.86548 1410.72368 0.91 36.01 2680 2680 MS2 19/26 Linfeng_20130204_CTCF_9.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 381 3.43 0.00 0 3 7 2 632.35175 1263.69621 1.45 50.26 4722 4722 MS2 18/20 Linfeng_20130201_rIgG_2.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 557 3.39 0.00 2 2 50 3 436.88916 1308.65293 -1.05 21.12 1536 1536 MS2 21/36 Linfeng_20130201_rIgG_10.raw High VDALmDEINFmK Unambiguous 3 1 P13647 M5(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 251 3.39 0.00 0 9 50 2 729.33667 1457.66606 0.61 43.58 3974 3974 MS2 18/22 Linfeng_20130201_rIgG_4.raw High SRTEAESWYQTKYEELQQTAGR Unambiguous 4 1 P13647 CID 1.0000 0.0000 1 1 411 3.39 0.00 2 4 50 3 887.75702 2661.25650 0.93 43.44 3973 3973 MS2 23/84 Linfeng_20130201_rIgG_9.raw High YEELQQTAGR Unambiguous 4 1 P13647 CID 1.0000 0.0000 1 1 358 3.36 0.00 0 25 50 2 597.79095 1194.57463 -0.29 24.33 1294 1294 MS2 14/18 Linfeng_20130204_CTCF_6.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 380 3.36 0.00 0 7 17 2 632.35144 1263.69560 0.97 50.45 4817 4817 MS2 18/20 Linfeng_20130201_rIgG_6.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 364 3.35 0.00 0 0 23 2 632.35095 1263.69463 0.19 50.50 4792 4792 MS2 18/20 Linfeng_20130201_rIgG_9.raw High NTKHEISEmNR Unambiguous 3 1 P13647 M9(Oxidation) CID 1.0000 0.0000 1 1 286 3.34 0.00 1 6 50 3 458.88550 1374.64194 -0.84 15.51 783 783 MS2 20/40 Linfeng_20130201_rIgG_5.raw High LAELEEALQK Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 563 3.34 0.00 0 20 4 2 572.31671 1143.62615 0.44 39.86 3617 3617 MS2 16/18 Linfeng_20130201_rIgG_1.raw High LLREYQELmNTK Unambiguous 3 1 P13647 M9(Oxidation) CID 1.0000 0.0000 1 1 560 3.34 0.00 1 22 50 3 518.60358 1553.79618 -1.99 33.22 2908 2908 MS2 21/44 Linfeng_20130201_rIgG_4.raw High SFSTASAITPSVSR Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 420 3.33 0.00 0 0 10 2 705.86505 1410.72283 0.31 35.39 2953 2953 MS2 21/26 Linfeng_20130201_rIgG_5.raw High LAELEEALQK Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 592 3.32 0.00 0 25 12 2 572.31677 1143.62627 0.55 40.21 3619 3619 MS2 16/18 Linfeng_20130201_rIgG_4.raw High LAELEEALQK Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 588 3.31 0.00 0 22 50 2 572.31647 1143.62566 0.01 40.35 3655 3655 MS2 16/18 Linfeng_20130201_rIgG_9.raw High SRTEAESWYQTKYEELQQTAGR Unambiguous 4 1 P13647 CID 1.0000 0.0000 1 1 436 3.30 0.00 2 11 8 3 887.75616 2661.25394 -0.03 43.18 3892 3892 MS2 26/84 Linfeng_20130201_rIgG_5.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 370 3.30 0.00 0 1 9 2 632.35095 1263.69463 0.19 50.48 4784 4784 MS2 18/20 Linfeng_20130201_rIgG_10.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 369 3.29 0.00 0 13 50 2 632.35126 1263.69524 0.68 50.66 3993 3993 MS2 18/20 Linfeng_20130204_CTCF_6.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 373 3.29 0.00 0 6 18 2 632.35089 1263.69451 0.10 50.14 4276 4276 MS2 17/20 Linfeng_20130204_CTCF_1.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 412 3.29 0.00 0 4 50 2 632.35089 1263.69451 0.10 51.23 4389 4389 MS2 18/20 Linfeng_20130204_CTCF_1.raw High SFSTASAITPSVSR Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 475 3.28 0.00 0 6 50 2 705.86462 1410.72197 -0.30 35.74 3220 3220 MS2 20/26 Linfeng_20130201_rIgG_6.raw High VLDTKWTLLQEQGTK Unambiguous 7 3 P13647;P04259;P48668 CID 1.0000 0.0000 1 1 439 3.27 0.00 1 30 11 3 587.32513 1759.96085 1.08 44.85 4102 4102 MS2 23/56 Linfeng_20130201_rIgG_5.raw High SFSTASAITPSVSR Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 487 3.27 0.00 0 0 33 2 705.86420 1410.72112 -0.90 35.68 3182 3182 MS2 21/26 Linfeng_20130201_rIgG_9.raw High TTAENEFVMLKK Unambiguous 4 1 P13647 CID 1.0000 0.0000 1 1 495 3.26 0.00 1 23 50 2 705.86926 1410.73125 1.03 37.42 2585 2585 MS2 17/22 Linfeng_20130204_CTCF_6.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 544 3.26 0.00 2 7 50 3 436.88925 1308.65320 -0.84 21.06 1533 1533 MS2 20/36 Linfeng_20130201_rIgG_3.raw High SFSTASAITPSVSR Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 451 3.26 0.00 0 8 50 2 705.86493 1410.72258 0.14 35.70 3267 3267 MS2 20/26 Linfeng_20130201_rIgG_7.raw High LAELEEALQK Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 545 3.26 0.00 0 38 50 2 572.31775 1143.62822 2.26 40.55 2918 2918 MS2 16/18 Linfeng_20130204_CTCF_6.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 546 3.25 0.00 2 8 50 3 436.88937 1308.65357 -0.56 20.77 1473 1473 MS2 19/36 Linfeng_20130201_rIgG_2.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 404 3.24 0.00 0 9 28 2 632.35107 1263.69487 0.39 50.67 4337 4337 MS2 17/20 Linfeng_20130204_CTCF_8.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 391 3.23 0.00 0 9 21 2 632.35101 1263.69475 0.29 50.32 4757 4757 MS2 18/20 Linfeng_20130201_rIgG_4.raw High VDALmDEINFmK Unambiguous 3 1 P13647 M5(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 236 3.22 0.00 0 13 50 2 729.33594 1457.66460 -0.39 43.54 3978 3978 MS2 18/22 Linfeng_20130201_rIgG_3.raw High mFFDAELSQmQTHVSDTSVVLSmDNNR Unambiguous 4 1 P13647 M1(Oxidation); M10(Oxidation); M23(Oxidation) CID 1.0000 0.0000 1 1 124 3.21 0.00 0 18 45 3 1050.79785 3150.37900 -0.77 46.62 4291 4291 MS2 22/104 Linfeng_20130201_rIgG_2.raw High VDALmDEINFMK Unambiguous 3 1 P13647 M5(Oxidation) CID 1.0000 0.0000 1 1 259 3.21 0.00 0 6 27 2 721.33868 1441.67009 -0.11 51.04 4920 4920 MS2 19/22 Linfeng_20130201_rIgG_1.raw High LAELEEALQK Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 450 3.21 0.00 0 32 50 2 572.31628 1143.62529 -0.31 40.32 3242 3242 MS2 16/18 Linfeng_20130204_CTCF_1.raw High LAELEEALQK Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 456 3.21 0.00 0 33 50 2 572.31580 1143.62432 -1.16 40.57 2922 2922 MS2 16/18 Linfeng_20130204_CTCF_4.raw High NKLAELEEALQK Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 521 3.19 0.00 1 5 50 3 462.59323 1385.76514 1.15 47.09 3614 3614 MS2 20/44 Linfeng_20130204_CTCF_6.raw High VDALmDEINFmK Unambiguous 3 1 P13647 M5(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 242 3.19 0.00 0 16 50 2 729.33557 1457.66387 -0.90 43.41 3953 3953 MS2 18/22 Linfeng_20130201_rIgG_2.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 412 3.19 0.00 0 16 20 2 632.35083 1263.69438 0.00 51.10 4927 4927 MS2 18/20 Linfeng_20130201_rIgG_1.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 384 3.19 0.00 0 0 28 2 632.35083 1263.69438 0.00 50.46 4287 4287 MS2 18/20 Linfeng_20130204_CTCF_2.raw High LAELEEALQK Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 555 3.18 0.00 0 20 37 2 572.31726 1143.62724 1.40 40.00 3209 3209 MS2 16/18 Linfeng_20130204_CTCF_1.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 543 3.18 0.00 2 3 50 3 436.88934 1308.65348 -0.63 21.08 1503 1503 MS2 19/36 Linfeng_20130201_rIgG_4.raw High SRTEAESWYQTKYEELQQTAGR Unambiguous 4 1 P13647 CID 1.0000 0.0000 1 1 431 3.18 0.00 2 2 9 4 666.06848 2661.25210 -0.73 43.12 3884 3884 MS2 36/126 Linfeng_20130201_rIgG_5.raw High YEELQQTAGR Unambiguous 4 1 P13647 CID 1.0000 0.0000 1 1 372 3.17 0.00 0 0 50 2 597.79126 1194.57524 0.22 23.29 1717 1717 MS2 16/18 Linfeng_20130201_rIgG_5.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 369 3.16 0.00 0 3 15 2 632.35052 1263.69377 -0.48 50.69 4239 4239 MS2 18/20 Linfeng_20130204_CTCF_7.raw High SFSTASAITPSVSR Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 487 3.16 0.00 0 6 50 2 705.86401 1410.72075 -1.16 36.33 2657 2657 MS2 18/26 Linfeng_20130204_CTCF_10.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 368 3.14 0.00 1 8 3 2 541.80359 1082.59990 0.50 38.24 3272 3272 MS2 15/16 Linfeng_20130201_rIgG_5.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 360 3.13 0.00 0 5 50 2 632.35236 1263.69744 2.42 50.69 3979 3979 MS2 18/20 Linfeng_20130204_CTCF_4.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 529 3.11 0.00 2 1 50 3 436.88965 1308.65439 0.07 21.08 1536 1536 MS2 20/36 Linfeng_20130201_rIgG_9.raw High SFSTASAITPSVSR Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 478 3.11 0.00 0 3 50 2 705.86438 1410.72148 -0.64 35.49 3150 3150 MS2 21/26 Linfeng_20130201_rIgG_3.raw High LAELEEALQK Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 552 3.09 0.00 0 35 50 2 572.31750 1143.62773 1.83 40.74 3113 3113 MS2 16/18 Linfeng_20130204_CTCF_10.raw High VLDTKWTLLQEQGTK Unambiguous 7 3 P13647;P04259;P48668 CID 1.0000 0.0000 1 1 439 3.09 0.00 1 18 15 3 587.32489 1759.96012 0.66 45.13 3410 3410 MS2 22/56 Linfeng_20130204_CTCF_6.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 533 3.08 0.00 2 4 50 3 436.88953 1308.65403 -0.21 21.39 1584 1584 MS2 21/36 Linfeng_20130201_rIgG_6.raw High VDALmDEINFMK Unambiguous 3 1 P13647 M5(Oxidation) CID 1.0000 0.0000 1 1 297 3.07 0.00 0 0 50 2 721.33936 1441.67143 0.82 51.25 4835 4835 MS2 19/22 Linfeng_20130201_rIgG_2.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 338 3.07 0.00 0 13 50 2 632.35077 1263.69426 -0.09 50.61 3969 3969 MS2 18/20 Linfeng_20130204_CTCF_3.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 311 3.05 0.00 1 21 50 2 541.80347 1082.59966 0.27 38.69 3473 3473 MS2 15/16 Linfeng_20130201_rIgG_3.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 389 3.05 0.00 0 4 9 2 632.35114 1263.69499 0.48 50.37 4753 4753 MS2 18/20 Linfeng_20130201_rIgG_3.raw High LLREYQELMNTK Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 439 3.04 0.00 1 13 46 3 513.27356 1537.80613 1.15 42.40 3117 3117 MS2 17/44 Linfeng_20130204_CTCF_6.raw High LAELEEALQK Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 563 3.04 0.00 0 21 30 2 572.31665 1143.62602 0.33 39.98 3600 3600 MS2 16/18 Linfeng_20130201_rIgG_2.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 343 3.04 0.00 1 56 50 2 541.80585 1082.60442 4.67 39.54 2816 2816 MS2 13/16 Linfeng_20130204_CTCF_4.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 366 3.02 0.00 1 17 36 2 541.80377 1082.60027 0.84 38.78 3468 3468 MS2 15/16 Linfeng_20130201_rIgG_4.raw High LAELEEALQK Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 566 3.02 0.00 0 24 13 2 572.31653 1143.62578 0.12 40.19 3630 3630 MS2 16/18 Linfeng_20130201_rIgG_3.raw High LALDVEIATYRK Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 301 3.02 0.00 1 25 23 2 696.39807 1391.78887 -0.35 44.32 4037 4037 MS2 17/22 Linfeng_20130201_rIgG_5.raw High YEELQQTAGR Unambiguous 4 1 P13647 CID 1.0000 0.0000 1 1 299 3.00 0.00 0 29 50 2 597.79022 1194.57317 -1.52 24.15 1805 1805 MS2 13/18 Linfeng_20130201_rIgG_5.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 648 2.99 0.00 0 1 5 2 602.32263 1203.63799 0.94 42.65 3143 3143 MS2 17/18 Linfeng_20130204_CTCF_6.raw High SFSTASAITPSVSR Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 474 2.99 0.00 0 10 50 2 705.86414 1410.72099 -0.99 35.30 3147 3147 MS2 20/26 Linfeng_20130201_rIgG_1.raw High LAELEEALQK Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 565 2.98 0.00 0 18 50 2 572.31738 1143.62749 1.62 40.52 2919 2919 MS2 16/18 Linfeng_20130204_CTCF_3.raw High SFSTASAITPSVSR Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 483 2.97 0.00 0 2 50 2 705.86444 1410.72161 -0.56 35.52 3155 3155 MS2 23/26 Linfeng_20130201_rIgG_10.raw High LAELEEALQK Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 585 2.96 0.00 0 19 46 2 572.31659 1143.62590 0.23 40.34 3197 3197 MS2 16/18 Linfeng_20130204_CTCF_2.raw High VDALmDEINFMK Unambiguous 3 1 P13647 M5(Oxidation) CID 1.0000 0.0000 1 1 297 2.95 0.00 0 4 50 2 721.34058 1441.67388 2.51 51.47 4890 4890 MS2 19/22 Linfeng_20130201_rIgG_4.raw High TTAENEFVmLK Unambiguous 4 1 P13647 M9(Oxidation) CID 1.0000 0.0000 1 1 358 2.94 0.00 0 20 50 2 649.81787 1298.62847 -0.99 39.36 2801 2801 MS2 14/20 Linfeng_20130204_CTCF_3.raw High LAELEEALQK Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 437 2.93 0.00 0 27 50 2 572.31622 1143.62517 -0.41 40.50 3704 3704 MS2 16/18 Linfeng_20130201_rIgG_6.raw High LAELEEALQK Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 475 2.93 0.00 0 24 50 2 572.31555 1143.62383 -1.59 40.43 3656 3656 MS2 16/18 Linfeng_20130201_rIgG_10.raw High NLDLDSIIAEVK Unambiguous 13 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 586 2.92 0.00 0 22 40 2 665.36633 1329.72539 -0.53 50.96 4023 4023 MS2 18/22 Linfeng_20130204_CTCF_6.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 361 2.92 0.00 0 4 50 2 632.35059 1263.69390 -0.38 50.96 4291 4291 MS2 17/20 Linfeng_20130204_CTCF_9.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 352 2.92 0.00 1 19 50 2 541.80304 1082.59880 -0.52 38.29 3426 3426 MS2 15/16 Linfeng_20130201_rIgG_2.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 581 2.92 0.00 0 16 50 2 602.32123 1203.63518 -1.40 41.17 3330 3330 MS2 16/18 Linfeng_20130204_CTCF_1.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 429 2.90 0.00 0 28 8 2 632.35022 1263.69316 -0.96 50.11 4779 4779 MS2 18/20 Linfeng_20130201_rIgG_5.raw High NMQDLVEDFK Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 262 2.90 0.00 0 7 47 2 619.78979 1238.57231 0.07 51.08 4835 4835 MS2 16/18 Linfeng_20130201_rIgG_3.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 330 2.90 0.00 1 11 50 2 541.80341 1082.59953 0.16 38.46 3467 3467 MS2 15/16 Linfeng_20130201_rIgG_1.raw High LAELEEALQK Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 583 2.89 0.00 0 30 50 2 572.31635 1143.62541 -0.20 40.54 3118 3118 MS2 16/18 Linfeng_20130204_CTCF_7.raw High LALDVEIATYRK Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 297 2.89 0.00 1 40 50 2 696.39825 1391.78923 -0.09 44.41 4063 4063 MS2 17/22 Linfeng_20130201_rIgG_4.raw High DVDAAYMNKVELEAK Unambiguous 4 1 P13647 CID 1.0000 0.0000 1 1 441 2.89 0.00 1 8 22 3 565.94684 1695.82596 0.04 40.00 2859 2859 MS2 17/56 Linfeng_20130204_CTCF_6.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 391 2.88 0.00 0 4 27 2 632.35120 1263.69512 0.58 50.42 4851 4851 MS2 18/20 Linfeng_20130201_rIgG_7.raw High TTAENEFVmLK Unambiguous 4 1 P13647 M9(Oxidation) CID 1.0000 0.0000 1 1 373 2.87 0.00 0 15 50 2 649.81958 1298.63188 1.65 39.10 3069 3069 MS2 16/20 Linfeng_20130204_CTCF_2.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 413 2.86 0.00 0 16 50 2 632.35260 1263.69792 2.80 51.92 4119 4119 MS2 16/20 Linfeng_20130204_CTCF_6.raw High TTAENEFVmLK Unambiguous 4 1 P13647 M9(Oxidation) CID 1.0000 0.0000 1 1 333 2.84 0.00 0 26 50 2 649.81934 1298.63140 1.27 39.25 3542 3542 MS2 15/20 Linfeng_20130201_rIgG_9.raw High TTAENEFVmLK Unambiguous 4 1 P13647 M9(Oxidation) CID 1.0000 0.0000 1 1 324 2.84 0.00 0 20 50 2 649.81708 1298.62688 -2.21 38.94 3485 3485 MS2 15/20 Linfeng_20130201_rIgG_4.raw High YEELQQTAGR Unambiguous 4 1 P13647 CID 1.0000 0.0000 1 1 325 2.82 0.00 0 0 50 2 597.79095 1194.57463 -0.29 22.98 1782 1782 MS2 16/18 Linfeng_20130201_rIgG_1.raw High SFSTASAITPSVSR Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 484 2.82 0.00 0 11 50 2 705.86487 1410.72246 0.05 35.53 3138 3138 MS2 20/26 Linfeng_20130201_rIgG_4.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 325 2.81 0.00 1 10 50 2 541.80310 1082.59892 -0.40 38.88 3045 3045 MS2 15/16 Linfeng_20130204_CTCF_2.raw High TTAENEFVmLK Unambiguous 4 1 P13647 M9(Oxidation) CID 1.0000 0.0000 1 1 339 2.81 0.00 0 3 50 2 649.81879 1298.63030 0.42 38.66 3069 3069 MS2 14/20 Linfeng_20130204_CTCF_1.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 450 2.80 0.00 0 0 16 2 632.35016 1263.69304 -1.06 50.43 4886 4886 MS2 17/20 Linfeng_20130201_rIgG_8.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 353 2.79 0.00 1 35 16 2 541.80286 1082.59844 -0.85 38.84 3353 3353 MS2 15/16 Linfeng_20130201_rIgG_5.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 657 2.78 0.00 0 6 50 2 602.32220 1203.63713 0.23 41.80 3396 3396 MS2 15/18 Linfeng_20130204_CTCF_1.raw High LAELEEALQK Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 440 2.77 0.00 0 13 50 2 572.31628 1143.62529 -0.31 40.35 3741 3741 MS2 16/18 Linfeng_20130201_rIgG_7.raw High TTAENEFVmLK Unambiguous 4 1 P13647 M9(Oxidation) CID 1.0000 0.0000 1 1 337 2.77 0.00 0 7 48 2 649.81860 1298.62993 0.14 39.71 3032 3032 MS2 16/20 Linfeng_20130204_CTCF_7.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 370 2.76 0.00 1 11 17 2 541.80353 1082.59978 0.39 39.08 2759 2759 MS2 15/16 Linfeng_20130204_CTCF_6.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 657 2.74 0.00 0 7 17 2 602.32214 1203.63701 0.12 41.62 3035 3035 MS2 16/18 Linfeng_20130204_CTCF_6.raw High TTAENEFVmLK Unambiguous 4 1 P13647 M9(Oxidation) CID 1.0000 0.0000 1 1 306 2.74 0.00 0 0 16 2 649.81683 1298.62639 -2.58 38.58 3319 3319 MS2 15/20 Linfeng_20130201_rIgG_5.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 677 2.74 0.00 0 28 50 2 602.32190 1203.63652 -0.28 41.92 3262 3262 MS2 16/18 Linfeng_20130204_CTCF_7.raw High LAELEEALQK Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 451 2.71 0.00 0 31 50 2 572.31628 1143.62529 -0.31 40.55 3145 3145 MS2 16/18 Linfeng_20130204_CTCF_9.raw High TTAENEFVmLK Unambiguous 4 1 P13647 M9(Oxidation) CID 1.0000 0.0000 1 1 329 2.71 0.00 0 18 50 2 649.81927 1298.63127 1.18 39.18 3569 3569 MS2 16/20 Linfeng_20130201_rIgG_6.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 339 2.71 0.00 1 0 17 2 541.80212 1082.59697 -2.21 38.74 3340 3340 MS2 15/16 Linfeng_20130201_rIgG_5.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 370 2.71 0.00 1 33 50 2 541.80371 1082.60015 0.72 39.05 3606 3606 MS2 14/16 Linfeng_20130201_rIgG_7.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 408 2.70 0.00 0 30 38 2 632.35114 1263.69499 0.48 51.32 4875 4875 MS2 17/20 Linfeng_20130201_rIgG_4.raw High YEELQQTAGR Unambiguous 4 1 P13647 CID 1.0000 0.0000 1 1 366 2.70 0.00 0 0 50 2 597.79102 1194.57475 -0.19 23.28 1822 1822 MS2 15/18 Linfeng_20130201_rIgG_10.raw High NmQDLVEDFK Unambiguous 3 1 P13647 M2(Oxidation) CID 1.0000 0.0000 1 1 183 2.70 0.00 0 56 50 2 627.78583 1254.56438 -2.21 39.22 3128 3128 MS2 14/18 Linfeng_20130204_CTCF_1.raw High AQYEEIANR Unambiguous 4 1 P13647 CID 1.0000 0.0000 1 1 413 2.69 0.00 0 0 50 2 547.26715 1093.52703 -0.25 24.96 1356 1356 MS2 14/16 Linfeng_20130204_CTCF_6.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 358 2.68 0.00 1 50 50 2 541.80542 1082.60356 3.88 39.43 3002 3002 MS2 15/16 Linfeng_20130204_CTCF_7.raw High NMQDLVEDFK Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 257 2.68 0.00 0 10 15 2 619.78918 1238.57109 -0.92 50.60 4867 4867 MS2 16/18 Linfeng_20130201_rIgG_1.raw High SFSTASAITPSVSR Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 475 2.68 0.00 0 8 50 2 705.86487 1410.72246 0.05 35.50 2751 2751 MS2 20/26 Linfeng_20130204_CTCF_1.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 367 2.67 0.00 1 35 50 2 541.80475 1082.60222 2.64 39.63 3049 3049 MS2 15/16 Linfeng_20130204_CTCF_9.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 393 2.64 0.00 0 21 50 2 632.35425 1263.70122 5.41 51.62 4404 4404 MS2 15/20 Linfeng_20130204_CTCF_2.raw High SFSTASAITPSVSR Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 434 2.64 0.00 0 4 50 2 705.86493 1410.72258 0.14 35.99 2655 2655 MS2 18/26 Linfeng_20130204_CTCF_7.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 419 2.63 0.00 0 0 31 2 632.34979 1263.69231 -1.64 51.13 4245 4245 MS2 17/20 Linfeng_20130204_CTCF_10.raw High SFSTASAITPSVSR Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 473 2.62 0.00 0 24 50 2 705.86456 1410.72185 -0.38 35.23 3118 3118 MS2 16/26 Linfeng_20130201_rIgG_2.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 353 2.62 0.00 1 15 15 2 541.80292 1082.59856 -0.74 38.71 3336 3336 MS2 15/16 Linfeng_20130201_rIgG_5.raw High AQYEEIANR Unambiguous 4 1 P13647 CID 1.0000 0.0000 1 1 430 2.62 0.00 0 21 50 2 547.26691 1093.52654 -0.70 25.83 1441 1441 MS2 13/16 Linfeng_20130204_CTCF_6.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 367 2.61 0.00 1 28 50 2 541.80426 1082.60124 1.74 39.63 2995 2995 MS2 15/16 Linfeng_20130204_CTCF_10.raw High NmQDLVEDFK Unambiguous 3 1 P13647 M2(Oxidation) CID 1.0000 0.0000 1 1 175 2.60 0.00 0 36 50 2 627.78632 1254.56536 -1.43 39.64 3172 3172 MS2 11/18 Linfeng_20130204_CTCF_1.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 356 2.58 0.00 1 19 47 2 541.80518 1082.60307 3.43 40.09 2869 2869 MS2 15/16 Linfeng_20130204_CTCF_6.raw High TTAENEFVmLK Unambiguous 4 1 P13647 M9(Oxidation) CID 1.0000 0.0000 1 1 330 2.56 0.00 0 8 50 2 649.81866 1298.63005 0.24 39.01 3509 3509 MS2 17/20 Linfeng_20130201_rIgG_10.raw High NmQDLVEDFK Unambiguous 3 1 P13647 M2(Oxidation) CID 1.0000 0.0000 1 1 235 2.55 0.00 0 40 50 2 627.78864 1254.56999 2.27 39.26 3534 3534 MS2 14/18 Linfeng_20130201_rIgG_3.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 536 2.55 0.00 2 18 50 3 436.88947 1308.65384 -0.35 20.77 1478 1478 MS2 18/36 Linfeng_20130201_rIgG_1.raw High SFSTASAITPSVSR Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 463 2.55 0.00 0 0 50 2 705.86615 1410.72502 1.87 35.72 2434 2434 MS2 15/26 Linfeng_20130204_CTCF_3.raw High LLREYQELmNTK Unambiguous 3 1 P13647 M9(Oxidation) CID 1.0000 0.0000 1 1 582 2.54 0.00 1 44 50 3 518.60352 1553.79599 -2.11 33.36 2942 2942 MS2 16/44 Linfeng_20130201_rIgG_10.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 325 2.54 0.00 1 26 41 2 541.80322 1082.59917 -0.18 38.91 3499 3499 MS2 15/16 Linfeng_20130201_rIgG_10.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 534 2.54 0.00 2 2 50 3 436.88959 1308.65421 -0.07 21.58 1010 1010 MS2 19/36 Linfeng_20130204_CTCF_6.raw High TTAENEFVmLK Unambiguous 4 1 P13647 M9(Oxidation) CID 1.0000 0.0000 1 1 340 2.53 0.00 0 3 50 2 649.81909 1298.63091 0.89 38.55 3453 3453 MS2 15/20 Linfeng_20130201_rIgG_2.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 527 2.52 0.00 2 41 50 3 436.88953 1308.65403 -0.21 19.76 1340 1340 MS2 15/36 Linfeng_20130201_rIgG_2.raw High NTKHEISEmNR Unambiguous 3 1 P13647 M9(Oxidation) CID 1.0000 0.0000 1 1 264 2.52 0.00 1 0 50 3 458.88489 1374.64011 -2.17 15.54 785 785 MS2 18/40 Linfeng_20130201_rIgG_10.raw High LLREYQELMNTK Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 458 2.51 0.00 1 14 50 3 513.27277 1537.80375 -0.39 42.19 3388 3388 MS2 15/44 Linfeng_20130204_CTCF_2.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 585 2.51 0.00 0 22 43 2 602.32166 1203.63603 -0.69 42.15 3266 3266 MS2 16/18 Linfeng_20130204_CTCF_10.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 676 2.51 0.00 0 26 19 2 602.32172 1203.63616 -0.59 41.46 3752 3752 MS2 17/18 Linfeng_20130201_rIgG_4.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 325 2.49 0.00 1 33 50 2 541.80322 1082.59917 -0.18 39.27 2988 2988 MS2 15/16 Linfeng_20130204_CTCF_8.raw High SGGGGGGGFGR Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 250 2.49 0.00 0 24 50 2 433.19910 865.39092 -0.29 17.09 968 968 MS2 15/20 Linfeng_20130201_rIgG_5.raw Medium NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 528 2.47 0.00 2 54 50 3 436.88983 1308.65494 0.49 20.07 1370 1370 MS2 19/36 Linfeng_20130201_rIgG_4.raw High TTAENEFVmLK Unambiguous 4 1 P13647 M9(Oxidation) CID 1.0000 0.0000 1 1 372 2.45 0.00 0 20 50 2 649.82104 1298.63481 3.90 39.53 2815 2815 MS2 12/20 Linfeng_20130204_CTCF_4.raw High TTAENEFVmLK Unambiguous 4 1 P13647 M9(Oxidation) CID 1.0000 0.0000 1 1 342 2.45 0.00 0 5 50 2 649.81903 1298.63078 0.80 39.18 3620 3620 MS2 15/20 Linfeng_20130201_rIgG_7.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 605 2.44 0.00 0 33 50 2 602.32281 1203.63835 1.24 41.68 3039 3039 MS2 16/18 Linfeng_20130204_CTCF_3.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 674 2.43 0.00 0 30 50 2 602.32196 1203.63664 -0.18 41.37 3755 3755 MS2 16/18 Linfeng_20130201_rIgG_10.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 600 2.42 0.00 0 35 50 2 602.32300 1203.63872 1.54 42.11 3080 3080 MS2 14/18 Linfeng_20130204_CTCF_4.raw Medium LLREYQELmNTK Unambiguous 3 1 P13647 M9(Oxidation) CID 1.0000 0.0000 1 1 547 2.42 0.00 1 34 50 3 518.60480 1553.79984 0.37 32.81 2880 2880 MS2 16/44 Linfeng_20130201_rIgG_2.raw High TTAENEFVmLK Unambiguous 4 1 P13647 M9(Oxidation) CID 1.0000 0.0000 1 1 324 2.41 0.00 0 4 50 2 649.81848 1298.62969 -0.05 38.79 3484 3484 MS2 16/20 Linfeng_20130201_rIgG_3.raw High SGGGGGGGFGR Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 250 2.41 0.00 0 16 50 2 433.19904 865.39079 -0.44 17.23 515 515 MS2 16/20 Linfeng_20130204_CTCF_6.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 524 2.41 0.00 2 4 50 2 654.82965 1308.65203 -1.74 20.78 1491 1491 MS2 14/18 Linfeng_20130201_rIgG_10.raw High TTAENEFVmLK Unambiguous 4 1 P13647 M9(Oxidation) CID 1.0000 0.0000 1 1 326 2.38 0.00 0 16 50 2 649.81842 1298.62956 -0.14 38.35 3455 3455 MS2 16/20 Linfeng_20130201_rIgG_1.raw High NmQDLVEDFK Unambiguous 3 1 P13647 M2(Oxidation) CID 1.0000 0.0000 1 1 219 2.37 0.00 0 31 50 2 627.78790 1254.56853 1.10 39.45 3540 3540 MS2 14/18 Linfeng_20130201_rIgG_4.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 309 2.37 0.00 1 17 50 2 541.80347 1082.59966 0.27 39.60 3561 3561 MS2 12/16 Linfeng_20130201_rIgG_2.raw High LALDVEIATYR Unambiguous 15 5 P35908;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 400 2.36 0.00 0 24 50 2 632.34979 1263.69231 -1.64 57.77 5133 5133 MS2 15/20 Linfeng_20130204_CTCF_1.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 367 2.36 0.00 1 47 29 2 541.80359 1082.59990 0.50 39.12 3388 3388 MS2 13/16 Linfeng_20130201_rIgG_5.raw High YEELQQTAGR Unambiguous 4 1 P13647 CID 1.0000 0.0000 1 1 330 2.35 0.00 0 0 50 2 597.79199 1194.57671 1.45 23.15 1815 1815 MS2 12/18 Linfeng_20130201_rIgG_3.raw Medium NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 528 2.34 0.00 2 6 50 3 436.88968 1308.65448 0.14 21.24 1550 1550 MS2 17/36 Linfeng_20130201_rIgG_8.raw High NMQDLVEDFK Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 264 2.34 0.00 0 24 36 2 619.78998 1238.57268 0.36 51.07 4846 4846 MS2 16/18 Linfeng_20130201_rIgG_4.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 344 2.34 0.00 1 29 50 2 541.80499 1082.60271 3.09 39.44 2810 2810 MS2 14/16 Linfeng_20130204_CTCF_3.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 367 2.33 0.00 1 53 50 2 541.80389 1082.60051 1.06 39.10 3561 3561 MS2 14/16 Linfeng_20130201_rIgG_6.raw Medium NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 528 2.32 0.00 2 58 50 3 436.88989 1308.65512 0.63 20.24 1360 1360 MS2 16/36 Linfeng_20130201_rIgG_5.raw High LAELEEALQK Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 476 2.32 0.00 0 48 31 2 572.31537 1143.62346 -1.91 40.13 3510 3510 MS2 15/18 Linfeng_20130201_rIgG_5.raw Medium NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 560 2.31 0.00 2 40 50 3 436.89014 1308.65586 1.19 20.76 1421 1421 MS2 18/36 Linfeng_20130201_rIgG_5.raw Medium NTKHEISEmNR Unambiguous 3 1 P13647 M9(Oxidation) CID 1.0000 0.0000 1 1 274 2.31 0.00 1 27 50 3 458.88513 1374.64084 -1.64 15.54 805 805 MS2 17/40 Linfeng_20130201_rIgG_2.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 513 2.27 0.00 2 11 50 2 654.83185 1308.65642 1.62 21.17 967 967 MS2 14/18 Linfeng_20130204_CTCF_6.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 354 2.27 0.00 1 19 50 2 541.80298 1082.59868 -0.63 39.96 3606 3606 MS2 12/16 Linfeng_20130201_rIgG_3.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 674 2.26 0.00 0 15 49 2 602.32257 1203.63786 0.83 41.40 3307 3307 MS2 16/18 Linfeng_20130204_CTCF_2.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 683 2.26 0.00 0 25 35 2 602.32245 1203.63762 0.63 42.03 3915 3915 MS2 16/18 Linfeng_20130201_rIgG_7.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 672 2.26 0.00 0 31 50 2 602.32251 1203.63774 0.73 41.60 3817 3817 MS2 17/18 Linfeng_20130201_rIgG_6.raw High NKYEDEINKR Unambiguous 11 5 P04264;P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 506 2.24 0.00 2 0 50 2 654.83093 1308.65459 0.22 21.04 1536 1536 MS2 14/18 Linfeng_20130201_rIgG_6.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 367 2.21 0.00 1 55 50 2 541.80396 1082.60063 1.18 38.89 3093 3093 MS2 13/16 Linfeng_20130204_CTCF_1.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 607 2.21 0.00 0 40 6 2 602.32104 1203.63481 -1.70 41.28 3657 3657 MS2 15/18 Linfeng_20130201_rIgG_5.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 622 2.20 0.00 0 27 50 2 602.32281 1203.63835 1.24 40.96 3701 3701 MS2 15/18 Linfeng_20130201_rIgG_2.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 659 2.20 0.00 0 20 50 2 602.32208 1203.63689 0.02 42.02 3297 3297 MS2 15/18 Linfeng_20130204_CTCF_9.raw High SGGGGGGGFGR Unambiguous 3 1 P13647 CID 1.0000 0.0000 1 1 254 2.19 0.00 0 33 50 2 433.19913 865.39098 -0.22 17.15 975 975 MS2 13/20 Linfeng_20130201_rIgG_5.raw High AQYEEIANR Unambiguous 4 1 P13647 CID 1.0000 0.0000 1 1 418 2.16 0.00 0 0 50 2 547.26660 1093.52593 -1.26 24.76 2007 2007 MS2 13/16 Linfeng_20130201_rIgG_10.raw High NmQDLVEDFK Unambiguous 3 1 P13647 M2(Oxidation) CID 1.0000 0.0000 1 1 216 2.16 0.00 0 41 50 2 627.78699 1254.56670 -0.36 39.03 3503 3503 MS2 14/18 Linfeng_20130201_rIgG_2.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 669 2.16 0.00 0 44 50 2 602.32190 1203.63652 -0.28 41.92 3060 3060 MS2 13/18 Linfeng_20130204_CTCF_4.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 577 2.10 0.00 0 41 50 2 602.32159 1203.63591 -0.79 41.18 3733 3733 MS2 16/18 Linfeng_20130201_rIgG_3.raw High ISISTSGGSFR Unambiguous 2 1 P13647 CID 1.0000 0.0000 1 1 440 2.09 0.00 0 4 50 2 556.29126 1111.57524 0.88 36.03 2444 2444 MS2 17/20 Linfeng_20130204_CTCF_6.raw High WTLLQEQGTK Unambiguous 9 4 P13647;P02538;P04259;P48668 CID 1.0000 0.0000 1 1 682 2.01 0.00 0 27 50 2 602.32220 1203.63713 0.23 42.21 3841 3841 MS2 14/18 Linfeng_20130201_rIgG_3.raw P02533 "Keratin, type I cytoskeletal 14 OS=Homo sapiens GN=KRT14 PE=1 SV=4 - [K1C14_HUMAN]" 39.83 8 9 24 237 494.26 36.44 19 147 292.22 38.35 20 90 472 51.5 5.16 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High LLEGEDAHLSSSQFSSGSQSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 289 5.66 0.00 0 0 27 2 1155.03784 2309.06841 1.86 34.38 2845 2845 MS2 26/42 Linfeng_20130201_rIgG_5.raw High GQVGGDVNVEMDAAPGVDLSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 342 5.66 0.00 0 0 50 2 1043.49829 2085.98931 1.06 44.01 4015 4015 MS2 28/40 Linfeng_20130201_rIgG_2.raw High GQVGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P02533 M11(Oxidation) CID 1.0000 0.0000 1 1 280 5.49 0.00 0 0 49 2 1051.49524 2101.98320 0.57 39.24 3576 3576 MS2 29/40 Linfeng_20130201_rIgG_6.raw High GQVGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P02533 M11(Oxidation) CID 1.0000 0.0000 1 1 280 5.45 0.00 0 0 50 2 1051.49451 2101.98174 -0.13 39.09 3502 3502 MS2 29/40 Linfeng_20130201_rIgG_4.raw High GQVGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P02533 M11(Oxidation) CID 1.0000 0.0000 1 1 293 5.43 0.00 0 0 27 2 1051.49622 2101.98516 1.50 39.19 2773 2773 MS2 28/40 Linfeng_20130204_CTCF_6.raw High GQVGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P02533 M11(Oxidation) CID 1.0000 0.0000 1 1 268 5.31 0.00 0 0 16 2 1051.49329 2101.97930 -1.29 38.93 3365 3365 MS2 31/40 Linfeng_20130201_rIgG_5.raw High GQVGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P02533 M11(Oxidation) CID 1.0000 0.0000 1 1 264 5.30 0.00 0 13 50 2 1051.49329 2101.97930 -1.29 38.89 3514 3514 MS2 26/40 Linfeng_20130201_rIgG_1.raw High TEELNREVATNSELVQSGK Unambiguous 5 2 P02533;Q04695 CID 1.0000 0.0000 1 1 437 5.30 0.00 1 6 50 3 702.02252 2104.05301 0.59 32.94 2686 2686 MS2 32/72 Linfeng_20130201_rIgG_5.raw High GQVGGDVNVEMDAAPGVDLSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 339 5.30 0.00 0 0 50 2 1043.49866 2085.99004 1.41 44.20 4041 4041 MS2 27/40 Linfeng_20130201_rIgG_4.raw High LLEGEDAHLSSSQFSSGSQSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 349 5.24 0.00 0 2 18 3 770.35999 2309.06540 0.56 34.10 2813 2813 MS2 37/84 Linfeng_20130201_rIgG_5.raw High TEELNREVATNSELVQSGK Unambiguous 5 2 P02533;Q04695 CID 1.0000 0.0000 1 1 431 5.19 0.00 1 0 50 3 702.02124 2104.04917 -1.23 33.11 2897 2897 MS2 34/72 Linfeng_20130201_rIgG_4.raw High TEELNREVATNSELVQSGK Unambiguous 5 2 P02533;Q04695 CID 1.0000 0.0000 1 1 452 5.17 0.00 1 6 46 3 702.02155 2104.05008 -0.80 33.22 2161 2161 MS2 25/72 Linfeng_20130204_CTCF_6.raw High LLEGEDAHLSSSQFSSGSQSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 320 5.15 0.00 0 2 50 3 770.35858 2309.06119 -1.26 33.98 2995 2995 MS2 38/84 Linfeng_20130201_rIgG_2.raw High GQVGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P02533 M11(Oxidation) CID 1.0000 0.0000 1 1 306 5.11 0.00 0 0 50 2 1051.49731 2101.98735 2.54 38.97 3102 3102 MS2 25/40 Linfeng_20130204_CTCF_1.raw High GQVGGDVNVEMDAAPGVDLSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 320 5.11 0.00 0 0 30 2 1043.49731 2085.98735 0.13 44.07 4072 4072 MS2 28/40 Linfeng_20130201_rIgG_1.raw High TEELNREVATNSELVQSGK Unambiguous 5 2 P02533;Q04695 CID 1.0000 0.0000 1 1 432 5.02 0.00 1 68 50 3 702.02124 2104.04917 -1.23 32.89 2896 2896 MS2 31/72 Linfeng_20130201_rIgG_10.raw High LLEGEDAHLSSSQFSSGSQSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 247 5.01 0.00 0 0 50 2 1155.03467 2309.06206 -0.89 34.54 3056 3056 MS2 23/42 Linfeng_20130201_rIgG_3.raw High GQVGGDVNVEMDAAPGVDLSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 346 4.99 0.00 0 0 42 2 1043.50012 2085.99297 2.82 44.21 3311 3311 MS2 26/40 Linfeng_20130204_CTCF_6.raw High GQVGGDVNVEMDAAPGVDLSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 376 4.90 0.00 0 0 50 2 1043.50024 2085.99321 2.93 44.13 4040 4040 MS2 25/40 Linfeng_20130201_rIgG_3.raw High GQVGGDVNVEMDAAPGVDLSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 314 4.89 0.00 0 0 50 2 1043.49731 2085.98735 0.13 44.34 4068 4068 MS2 27/40 Linfeng_20130201_rIgG_9.raw High TEELNREVATNSELVQSGK Unambiguous 5 2 P02533;Q04695 CID 1.0000 0.0000 1 1 451 4.88 0.00 1 0 50 3 702.02258 2104.05320 0.68 32.74 2874 2874 MS2 35/72 Linfeng_20130201_rIgG_2.raw High GQVGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P02533 M11(Oxidation) CID 1.0000 0.0000 1 1 296 4.86 0.00 0 0 50 2 1051.49622 2101.98516 1.50 39.15 3074 3074 MS2 27/40 Linfeng_20130204_CTCF_2.raw High LLEGEDAHLSSSQFSSGSQSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 349 4.85 0.00 0 33 50 3 770.35980 2309.06485 0.32 34.31 3130 3130 MS2 34/84 Linfeng_20130201_rIgG_7.raw High GQVGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P02533 M11(Oxidation) CID 1.0000 0.0000 1 1 283 4.83 0.00 0 20 50 2 1051.49524 2101.98320 0.57 39.21 3538 3538 MS2 26/40 Linfeng_20130201_rIgG_9.raw High TEELNREVATNSELVQSGK Unambiguous 5 2 P02533;Q04695 CID 1.0000 0.0000 1 1 444 4.76 0.00 1 4 50 3 702.02148 2104.04990 -0.88 33.03 2919 2919 MS2 34/72 Linfeng_20130201_rIgG_9.raw High LLEGEDAHLSSSQFSSGSQSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 283 4.74 0.00 0 0 50 2 1155.03650 2309.06572 0.70 34.74 2315 2315 MS2 24/42 Linfeng_20130204_CTCF_6.raw High TEELNREVATNSELVQSGK Unambiguous 5 2 P02533;Q04695 CID 1.0000 0.0000 1 1 454 4.63 0.00 1 13 50 3 702.02081 2104.04789 -1.84 33.18 2968 2968 MS2 27/72 Linfeng_20130201_rIgG_6.raw High LLEGEDAHLSSSQFSSGSQSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 315 4.63 0.00 0 2 50 3 770.35913 2309.06284 -0.55 34.21 3006 3006 MS2 36/84 Linfeng_20130201_rIgG_4.raw High GQVGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P02533 M11(Oxidation) CID 1.0000 0.0000 1 1 295 4.62 0.00 0 0 50 2 1051.49585 2101.98442 1.15 39.10 3519 3519 MS2 28/40 Linfeng_20130201_rIgG_10.raw High LLEGEDAHLSSSQFSSGSQSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 335 4.60 0.00 0 0 50 3 770.35944 2309.06375 -0.15 34.23 3025 3025 MS2 36/84 Linfeng_20130201_rIgG_3.raw High RLLEGEDAHLSSSQFSSGSQSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 402 4.57 0.00 1 14 50 3 822.39447 2465.16886 1.47 32.66 2658 2658 MS2 31/88 Linfeng_20130201_rIgG_5.raw High LLEGEDAHLSSSQFSSGSQSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 317 4.57 0.00 0 24 50 3 770.35858 2309.06119 -1.26 34.27 3042 3042 MS2 31/84 Linfeng_20130201_rIgG_9.raw High TEELNREVATNSELVQSGK Unambiguous 5 2 P02533;Q04695 CID 1.0000 0.0000 1 1 469 4.57 0.00 1 7 50 3 702.02179 2104.05082 -0.45 32.85 2904 2904 MS2 30/72 Linfeng_20130201_rIgG_1.raw High LLEGEDAHLSSSQFSSGSQSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 346 4.55 0.00 0 0 11 3 770.35974 2309.06467 0.24 34.44 2285 2285 MS2 28/84 Linfeng_20130204_CTCF_6.raw High LLEGEDAHLSSSQFSSGSQSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 226 4.53 0.00 0 0 50 2 1155.03516 2309.06304 -0.47 34.15 3031 3031 MS2 24/42 Linfeng_20130201_rIgG_1.raw High RLLEGEDAHLSSSQFSSGSQSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 409 4.52 0.00 1 0 50 3 822.39594 2465.17325 3.25 32.96 2899 2899 MS2 29/88 Linfeng_20130201_rIgG_3.raw High LLEGEDAHLSSSQFSSGSQSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 312 4.43 0.00 0 57 50 3 770.35773 2309.05863 -2.37 34.34 3082 3082 MS2 33/84 Linfeng_20130201_rIgG_6.raw High GQVGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P02533 M11(Oxidation) CID 1.0000 0.0000 1 1 321 4.37 0.00 0 0 50 2 1051.49829 2101.98931 3.47 38.85 3484 3484 MS2 25/40 Linfeng_20130201_rIgG_2.raw High LLEGEDAHLSSSQFSSGSQSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 350 4.37 0.00 0 1 50 3 770.35980 2309.06485 0.32 34.55 2514 2514 MS2 29/84 Linfeng_20130204_CTCF_7.raw High GQVGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P02533 M11(Oxidation) CID 1.0000 0.0000 1 1 273 4.31 0.00 0 0 50 2 1051.49658 2101.98589 1.85 39.28 2793 2793 MS2 25/40 Linfeng_20130204_CTCF_3.raw High TEELNREVATNSELVQSGK Unambiguous 5 2 P02533;Q04695 CID 1.0000 0.0000 1 1 462 4.27 0.00 1 0 50 3 702.02216 2104.05191 0.07 33.07 2910 2910 MS2 29/72 Linfeng_20130201_rIgG_3.raw High LLEGEDAHLSSSQFSSGSQSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 292 4.20 0.00 0 0 50 2 1155.03748 2309.06767 1.54 34.54 2612 2612 MS2 22/42 Linfeng_20130204_CTCF_2.raw High LLEGEDAHLSSSQFSSGSQSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 320 4.18 0.00 0 0 50 3 770.35858 2309.06119 -1.26 34.07 2609 2609 MS2 28/84 Linfeng_20130204_CTCF_1.raw High LLEGEDAHLSSSQFSSGSQSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 319 4.16 0.00 0 7 50 3 770.35876 2309.06174 -1.03 33.84 3001 3001 MS2 36/84 Linfeng_20130201_rIgG_1.raw High LLEGEDAHLSSSQFSSGSQSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 291 4.16 0.00 0 0 50 2 1155.03796 2309.06865 1.97 34.50 3054 3054 MS2 21/42 Linfeng_20130201_rIgG_10.raw High GQVGGDVNVEMDAAPGVDLSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 307 4.14 0.00 0 0 50 2 1043.49792 2085.98857 0.71 44.29 4096 4096 MS2 23/40 Linfeng_20130201_rIgG_6.raw High GQVGGDVNVEMDAAPGVDLSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 323 4.09 0.00 0 0 50 2 1043.49768 2085.98808 0.48 44.15 3636 3636 MS2 22/40 Linfeng_20130204_CTCF_1.raw High LLEGEDAHLSSSQFSSGSQSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 290 4.09 0.00 0 0 50 2 1155.03833 2309.06938 2.28 34.29 3025 3025 MS2 21/42 Linfeng_20130201_rIgG_2.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 457 4.08 0.00 0 0 6 2 651.33459 1301.66191 2.69 34.34 2274 2274 MS2 19/22 Linfeng_20130204_CTCF_6.raw High RLLEGEDAHLSSSQFSSGSQSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 405 4.07 0.00 1 0 50 3 822.39465 2465.16941 1.69 32.88 2895 2895 MS2 25/88 Linfeng_20130201_rIgG_10.raw High LLEGEDAHLSSSQFSSGSQSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 315 4.06 0.00 0 20 50 3 770.35876 2309.06174 -1.03 34.52 2531 2531 MS2 25/84 Linfeng_20130204_CTCF_9.raw High LLEGEDAHLSSSQFSSGSQSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 342 4.06 0.00 0 0 50 3 770.36047 2309.06687 1.19 34.41 2306 2306 MS2 31/84 Linfeng_20130204_CTCF_3.raw High LLEGEDAHLSSSQFSSGSQSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 323 4.05 0.00 0 22 50 3 770.35931 2309.06339 -0.31 34.74 2495 2495 MS2 30/84 Linfeng_20130204_CTCF_10.raw High TEELNREVATNSELVQSGK Unambiguous 5 2 P02533;Q04695 CID 1.0000 0.0000 1 1 435 3.96 0.00 1 0 50 2 1052.53333 2104.05937 3.62 33.50 2190 2190 MS2 20/36 Linfeng_20130204_CTCF_6.raw High GQVGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P02533 M11(Oxidation) CID 1.0000 0.0000 1 1 337 3.94 0.00 0 0 10 3 701.33203 2101.98154 -0.22 38.98 3371 3371 MS2 30/80 Linfeng_20130201_rIgG_5.raw High LLEGEDAHLSSSQFSSGSQSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 338 3.94 0.00 0 25 50 3 770.35950 2309.06394 -0.08 34.09 3015 3015 MS2 32/84 Linfeng_20130201_rIgG_10.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 492 3.94 0.00 1 22 50 2 690.36725 1379.72722 -0.42 35.70 2726 2726 MS2 17/20 Linfeng_20130204_CTCF_2.raw High TEELNREVATNSELVQSGK Unambiguous 5 2 P02533;Q04695 CID 1.0000 0.0000 1 1 451 3.94 0.00 1 0 50 3 702.02106 2104.04862 -1.49 33.10 2472 2472 MS2 25/72 Linfeng_20130204_CTCF_2.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 520 3.89 0.00 1 18 50 2 690.36694 1379.72661 -0.86 36.41 2664 2664 MS2 17/20 Linfeng_20130204_CTCF_10.raw High GQVGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P02533 M11(Oxidation) CID 1.0000 0.0000 1 1 359 3.88 0.00 0 0 50 3 701.33417 2101.98795 2.83 39.30 2784 2784 MS2 24/80 Linfeng_20130204_CTCF_6.raw High GQVGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P02533 M11(Oxidation) CID 1.0000 0.0000 1 1 279 3.82 0.00 0 0 50 2 1051.49500 2101.98271 0.34 39.06 3513 3513 MS2 22/40 Linfeng_20130201_rIgG_3.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 525 3.76 0.00 1 11 50 2 690.36841 1379.72954 1.26 36.24 2679 2679 MS2 17/20 Linfeng_20130204_CTCF_7.raw High VTmQNLNDRLASYLDKVR Unambiguous 3 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 493 3.75 0.00 2 19 7 3 718.04352 2152.11600 -0.93 47.44 4430 4430 MS2 24/68 Linfeng_20130201_rIgG_5.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 479 3.68 0.00 1 0 50 2 690.36774 1379.72820 0.29 36.06 2468 2468 MS2 16/20 Linfeng_20130204_CTCF_3.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 471 3.63 0.00 0 12 20 2 651.33319 1301.65911 0.53 33.90 2791 2791 MS2 19/22 Linfeng_20130201_rIgG_5.raw High TRLEQEIATYRR Unambiguous 5 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 452 3.62 0.00 2 8 50 3 512.61389 1535.82712 -1.17 32.08 2811 2811 MS2 19/44 Linfeng_20130201_rIgG_3.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 469 3.61 0.00 0 37 50 2 651.33240 1301.65752 -0.69 34.10 2568 2568 MS2 19/22 Linfeng_20130204_CTCF_2.raw High TEELNREVATNSELVQSGK Unambiguous 5 2 P02533;Q04695 CID 1.0000 0.0000 1 1 469 3.61 0.00 1 5 50 3 702.02185 2104.05100 -0.36 33.24 2405 2405 MS2 26/72 Linfeng_20130204_CTCF_9.raw High LLEGEDAHLSSSQFSSGSQSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 318 3.60 0.00 0 0 50 3 770.35907 2309.06266 -0.63 34.26 2585 2585 MS2 28/84 Linfeng_20130204_CTCF_2.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 517 3.60 0.00 1 7 50 2 690.36871 1379.73015 1.70 36.23 2702 2702 MS2 16/20 Linfeng_20130204_CTCF_9.raw High RLLEGEDAHLSSSQFSSGSQSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 400 3.58 0.00 1 7 50 3 822.39276 2465.16373 -0.61 33.07 2469 2469 MS2 23/88 Linfeng_20130204_CTCF_2.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 477 3.57 0.00 1 12 50 2 690.36737 1379.72746 -0.24 35.61 3146 3146 MS2 17/20 Linfeng_20130201_rIgG_4.raw High RVLDELTLAR Unambiguous 9 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 409 3.56 0.00 1 47 50 2 593.35095 1185.69463 -0.37 40.44 2906 2906 MS2 16/18 Linfeng_20130204_CTCF_6.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 520 3.55 0.00 1 10 50 2 690.36847 1379.72966 1.35 35.81 3148 3148 MS2 17/20 Linfeng_20130201_rIgG_8.raw High TEELNREVATNSELVQSGK Unambiguous 5 2 P02533;Q04695 CID 1.0000 0.0000 1 1 447 3.54 0.00 1 16 50 3 702.02142 2104.04972 -0.97 33.45 2366 2366 MS2 25/72 Linfeng_20130204_CTCF_10.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 492 3.54 0.00 0 13 50 2 651.33276 1301.65825 -0.12 34.12 3014 3014 MS2 19/22 Linfeng_20130201_rIgG_3.raw High APSTYGGGLSVSSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 394 3.54 0.00 0 17 50 2 713.35333 1425.69939 1.74 30.06 1848 1848 MS2 19/28 Linfeng_20130204_CTCF_6.raw High LLEGEDAHLSSSQFSSGSQSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 314 3.50 0.00 0 57 50 3 770.35925 2309.06321 -0.39 34.39 3002 3002 MS2 28/84 Linfeng_20130201_rIgG_8.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 504 3.48 0.00 1 4 50 2 690.36700 1379.72673 -0.77 35.58 3161 3161 MS2 16/20 Linfeng_20130201_rIgG_10.raw High TEELNREVATNSELVQSGK Unambiguous 5 2 P02533;Q04695 CID 1.0000 0.0000 1 1 454 3.44 0.00 1 0 50 3 702.02161 2104.05027 -0.71 33.21 2189 2189 MS2 23/72 Linfeng_20130204_CTCF_3.raw High GQVGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P02533 M11(Oxidation) CID 1.0000 0.0000 1 1 345 3.40 0.00 0 11 50 3 701.33301 2101.98447 1.17 39.19 3513 3513 MS2 26/80 Linfeng_20130201_rIgG_4.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 449 3.40 0.00 1 18 50 2 690.36963 1379.73198 3.03 36.10 2451 2451 MS2 17/20 Linfeng_20130204_CTCF_6.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 464 3.39 0.00 0 11 50 2 651.33368 1301.66008 1.28 34.17 2496 2496 MS2 18/22 Linfeng_20130204_CTCF_9.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 490 3.39 0.00 1 12 50 2 690.36731 1379.72734 -0.33 35.27 2728 2728 MS2 17/20 Linfeng_20130204_CTCF_1.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 451 3.39 0.00 0 12 50 2 651.33600 1301.66472 4.85 34.29 2467 2467 MS2 18/22 Linfeng_20130204_CTCF_8.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 498 3.39 0.00 0 9 50 2 651.33258 1301.65788 -0.40 33.95 3001 3001 MS2 19/22 Linfeng_20130201_rIgG_10.raw High QRPAEIKDYSPYFK Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 506 3.38 0.00 2 15 50 3 581.30219 1741.89200 0.66 35.79 3196 3196 MS2 19/52 Linfeng_20130201_rIgG_1.raw High GQVGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P02533 M11(Oxidation) CID 1.0000 0.0000 1 1 323 3.38 0.00 0 7 36 3 701.33252 2101.98301 0.48 38.96 3522 3522 MS2 29/80 Linfeng_20130201_rIgG_1.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 458 3.37 0.00 0 17 50 2 651.33246 1301.65764 -0.59 33.90 2593 2593 MS2 19/22 Linfeng_20130204_CTCF_1.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 532 3.37 0.00 1 8 50 2 690.36853 1379.72978 1.44 36.19 2476 2476 MS2 16/20 Linfeng_20130204_CTCF_4.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 561 3.35 0.00 0 14 50 2 515.30219 1029.59709 3.06 42.70 3141 3141 MS2 15/16 Linfeng_20130204_CTCF_4.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 452 3.34 0.00 1 30 46 2 690.36908 1379.73088 2.23 35.54 2970 2970 MS2 17/20 Linfeng_20130201_rIgG_5.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 398 3.34 0.00 0 34 50 2 515.30035 1029.59343 -0.50 42.30 3399 3399 MS2 15/16 Linfeng_20130204_CTCF_2.raw High GQVGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P02533 M11(Oxidation) CID 1.0000 0.0000 1 1 327 3.34 0.00 0 12 50 3 701.33167 2101.98044 -0.74 39.25 3577 3577 MS2 27/80 Linfeng_20130201_rIgG_6.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 472 3.34 0.00 1 7 50 2 690.36823 1379.72917 0.99 35.07 3102 3102 MS2 17/20 Linfeng_20130201_rIgG_2.raw High LLEGEDAHLSSSQFSSGSQSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 317 3.32 0.00 0 39 50 3 770.35834 2309.06046 -1.58 34.56 2496 2496 MS2 21/84 Linfeng_20130204_CTCF_8.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 461 3.31 0.00 1 0 50 2 690.36749 1379.72771 -0.07 34.84 3100 3100 MS2 17/20 Linfeng_20130201_rIgG_1.raw High EVATNSELVQSGK Unambiguous 5 2 P02533;Q04695 CID 1.0000 0.0000 1 1 540 3.30 0.00 0 18 50 2 681.34906 1361.69084 0.06 24.65 1326 1326 MS2 17/24 Linfeng_20130204_CTCF_6.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 453 3.30 0.00 0 10 50 2 651.33380 1301.66033 1.47 34.20 2479 2479 MS2 19/22 Linfeng_20130204_CTCF_7.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 482 3.29 0.00 0 24 50 2 651.33295 1301.65862 0.16 34.05 3104 3104 MS2 17/22 Linfeng_20130201_rIgG_7.raw High APSTYGGGLSVSSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 373 3.29 0.00 0 19 50 2 713.35199 1425.69670 -0.14 30.74 2642 2642 MS2 19/28 Linfeng_20130201_rIgG_8.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 533 3.29 0.00 1 21 36 3 460.58038 1379.72660 -0.87 35.72 3157 3157 MS2 20/40 Linfeng_20130201_rIgG_4.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 475 3.28 0.00 0 16 43 2 651.33307 1301.65886 0.35 34.07 2992 2992 MS2 19/22 Linfeng_20130201_rIgG_4.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 377 3.28 0.00 0 8 20 2 515.30042 1029.59355 -0.38 41.88 3730 3730 MS2 15/16 Linfeng_20130201_rIgG_5.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 392 3.27 0.00 0 7 28 2 515.30048 1029.59368 -0.26 42.20 3839 3839 MS2 15/16 Linfeng_20130201_rIgG_3.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 303 3.26 0.00 0 7 35 2 515.30078 1029.59429 0.33 42.20 3828 3828 MS2 15/16 Linfeng_20130201_rIgG_4.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 484 3.25 0.00 0 11 50 2 651.33405 1301.66081 1.85 34.99 2340 2340 MS2 19/22 Linfeng_20130204_CTCF_6.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 304 3.23 0.00 0 13 38 2 515.30090 1029.59453 0.57 41.81 3827 3827 MS2 15/16 Linfeng_20130201_rIgG_1.raw High ILNEmRDQYEK Unambiguous 3 2 P02533;Q04695 M5(Oxidation) CID 1.0000 0.0000 1 1 358 3.23 0.00 1 0 50 2 727.85046 1454.69365 -0.56 21.75 1540 1540 MS2 14/20 Linfeng_20130201_rIgG_5.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 465 3.22 0.00 1 23 50 3 460.57971 1379.72458 -2.33 35.86 3189 3189 MS2 21/40 Linfeng_20130201_rIgG_10.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 310 3.20 0.00 1 1 50 2 532.80969 1064.61211 2.06 32.85 2123 2123 MS2 15/16 Linfeng_20130204_CTCF_6.raw High QRPAEIKDYSPYFK Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 470 3.18 0.00 2 6 50 3 581.30151 1741.88999 -0.50 35.88 3183 3183 MS2 21/52 Linfeng_20130201_rIgG_2.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 402 3.17 0.00 0 31 50 2 515.30060 1029.59392 -0.02 42.64 3137 3137 MS2 15/16 Linfeng_20130204_CTCF_3.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 513 3.17 0.00 1 31 50 2 690.36664 1379.72600 -1.31 36.13 3230 3230 MS2 17/20 Linfeng_20130201_rIgG_1.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 493 3.15 0.00 0 7 50 2 651.33295 1301.65862 0.16 34.09 3057 3057 MS2 17/22 Linfeng_20130201_rIgG_6.raw High TRLEQEIATYRR Unambiguous 5 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 454 3.15 0.00 2 2 50 3 512.61371 1535.82657 -1.53 32.19 2383 2383 MS2 16/44 Linfeng_20130204_CTCF_2.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 553 3.13 0.00 0 9 50 2 651.33777 1301.66826 7.57 33.26 2165 2165 MS2 19/22 Linfeng_20130204_CTCF_6.raw High NRKDAEEWFFTK Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 405 3.12 0.00 2 11 41 3 524.25940 1570.76364 -0.83 42.87 3167 3167 MS2 22/44 Linfeng_20130204_CTCF_6.raw High APSTYGGGLSVSSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 359 3.12 0.00 0 11 31 2 713.35181 1425.69634 -0.40 30.66 2458 2458 MS2 21/28 Linfeng_20130201_rIgG_5.raw High RLLEGEDAHLSSSQFSSGSQSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 401 3.11 0.00 1 0 50 3 822.39301 2465.16446 -0.31 33.08 2924 2924 MS2 25/88 Linfeng_20130201_rIgG_9.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 391 3.11 0.00 0 8 25 2 515.30023 1029.59319 -0.73 43.22 3897 3897 MS2 15/16 Linfeng_20130201_rIgG_5.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 480 3.11 0.00 0 18 50 2 651.33289 1301.65849 0.06 33.89 2986 2986 MS2 18/22 Linfeng_20130201_rIgG_2.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 464 3.10 0.00 0 12 50 2 651.33252 1301.65776 -0.50 34.02 3017 3017 MS2 19/22 Linfeng_20130201_rIgG_9.raw High mSVEADINGLR Unambiguous 3 1 P02533 M1(Oxidation) CID 1.0000 0.0000 1 1 467 3.10 0.00 0 33 50 2 610.79919 1220.59111 -2.40 38.39 2894 2894 MS2 18/20 Linfeng_20130204_CTCF_7.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 398 3.09 0.00 0 24 40 2 515.30048 1029.59368 -0.26 42.40 3884 3884 MS2 15/16 Linfeng_20130201_rIgG_8.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 481 3.09 0.00 1 0 50 2 690.36761 1379.72795 0.11 35.39 3140 3140 MS2 17/20 Linfeng_20130201_rIgG_3.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 484 3.09 0.00 1 23 50 2 690.36737 1379.72746 -0.24 35.83 3280 3280 MS2 17/20 Linfeng_20130201_rIgG_7.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 506 3.08 0.00 1 13 50 2 690.36700 1379.72673 -0.77 35.79 3193 3193 MS2 17/20 Linfeng_20130201_rIgG_9.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 516 3.04 0.00 1 20 50 2 690.36877 1379.73027 1.79 35.92 3238 3238 MS2 16/20 Linfeng_20130201_rIgG_6.raw High QRPAEIKDYSPYFK Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 504 3.01 0.00 2 9 50 3 581.30377 1741.89676 3.39 36.36 2478 2478 MS2 19/52 Linfeng_20130204_CTCF_6.raw High VTmQNLNDRLASYLDKVR Unambiguous 3 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 473 2.99 0.00 2 24 29 3 718.04553 2152.12204 1.88 48.01 4559 4559 MS2 24/68 Linfeng_20130201_rIgG_7.raw Medium VTmQNLNDRLASYLDKVR Unambiguous 3 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 476 2.99 0.00 2 10 3 4 538.78491 2152.11782 -0.09 47.42 4427 4427 MS2 30/102 Linfeng_20130201_rIgG_5.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 395 2.99 0.00 0 26 50 2 515.30060 1029.59392 -0.02 42.19 3841 3841 MS2 15/16 Linfeng_20130201_rIgG_10.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 244 2.97 0.00 1 11 50 2 532.80872 1064.61016 0.23 32.63 2965 2965 MS2 14/16 Linfeng_20130201_rIgG_7.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 513 2.96 0.00 0 14 50 2 651.33429 1301.66130 2.22 36.15 2456 2456 MS2 18/22 Linfeng_20130204_CTCF_6.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 528 2.96 0.00 1 21 31 3 460.58038 1379.72660 -0.87 35.68 3169 3169 MS2 21/40 Linfeng_20130201_rIgG_3.raw High QRPAEIKDYSPYFK Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 504 2.96 0.00 2 23 40 3 581.30310 1741.89475 2.24 35.84 3002 3002 MS2 20/52 Linfeng_20130201_rIgG_5.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 294 2.96 0.00 0 7 50 2 515.30078 1029.59429 0.33 42.68 3339 3339 MS2 15/16 Linfeng_20130204_CTCF_7.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 444 2.95 0.00 0 8 50 2 651.33173 1301.65618 -1.72 33.03 2921 2921 MS2 16/22 Linfeng_20130201_rIgG_1.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 525 2.94 0.00 1 32 50 3 460.58029 1379.72632 -1.07 36.08 3254 3254 MS2 19/40 Linfeng_20130201_rIgG_6.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 524 2.94 0.00 0 30 50 2 515.30115 1029.59502 1.05 43.00 3356 3356 MS2 15/16 Linfeng_20130204_CTCF_10.raw High TRLEQEIATYRR Unambiguous 5 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 466 2.93 0.00 2 7 50 3 512.61365 1535.82639 -1.65 32.40 2942 2942 MS2 17/44 Linfeng_20130201_rIgG_7.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 240 2.93 0.00 1 8 50 2 532.80853 1064.60979 -0.12 32.41 2844 2844 MS2 14/16 Linfeng_20130201_rIgG_3.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 551 2.92 0.00 0 5 50 2 515.30115 1029.59502 1.05 42.36 3949 3949 MS2 15/16 Linfeng_20130201_rIgG_7.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 312 2.92 0.00 1 26 50 2 532.80811 1064.60893 -0.92 32.62 2913 2913 MS2 14/16 Linfeng_20130201_rIgG_6.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 501 2.91 0.00 0 20 50 2 651.33435 1301.66142 2.31 34.17 2980 2980 MS2 18/22 Linfeng_20130201_rIgG_8.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 411 2.91 0.00 0 19 50 2 515.29987 1029.59245 -1.44 42.31 3857 3857 MS2 15/16 Linfeng_20130201_rIgG_9.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 307 2.90 0.00 1 8 50 2 532.80908 1064.61089 0.92 32.38 2629 2629 MS2 15/16 Linfeng_20130201_rIgG_5.raw High GQVGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P02533 M11(Oxidation) CID 1.0000 0.0000 1 1 327 2.89 0.00 0 16 50 3 701.33185 2101.98099 -0.48 39.18 3527 3527 MS2 24/80 Linfeng_20130201_rIgG_10.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 401 2.88 0.00 0 7 50 2 515.29980 1029.59233 -1.56 42.13 3429 3429 MS2 15/16 Linfeng_20130204_CTCF_1.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 299 2.88 0.00 0 4 32 2 515.30103 1029.59477 0.81 42.43 3121 3121 MS2 15/16 Linfeng_20130204_CTCF_6.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 306 2.86 0.00 1 9 50 2 532.80939 1064.61150 1.49 31.79 2017 2017 MS2 14/16 Linfeng_20130204_CTCF_6.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 307 2.85 0.00 1 38 50 2 532.80811 1064.60893 -0.92 33.12 2333 2333 MS2 14/16 Linfeng_20130204_CTCF_10.raw High APSTYGGGLSVSSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 347 2.84 0.00 0 9 50 2 713.35248 1425.69768 0.55 30.69 2690 2690 MS2 18/28 Linfeng_20130201_rIgG_9.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 392 2.84 0.00 0 11 50 2 515.30042 1029.59355 -0.38 42.31 3890 3890 MS2 15/16 Linfeng_20130201_rIgG_6.raw High APSTYGGGLSVSSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 365 2.84 0.00 0 22 50 2 713.35236 1425.69744 0.37 30.82 2125 2125 MS2 16/28 Linfeng_20130204_CTCF_8.raw High mSVEADINGLR Unambiguous 3 1 P02533 M1(Oxidation) CID 1.0000 0.0000 1 1 420 2.82 0.00 0 31 50 2 610.79999 1220.59270 -1.10 37.69 2971 2971 MS2 17/20 Linfeng_20130204_CTCF_1.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 303 2.82 0.00 1 21 50 2 532.80823 1064.60918 -0.69 32.70 2972 2972 MS2 13/16 Linfeng_20130201_rIgG_7.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 394 2.81 0.00 0 7 50 2 515.30054 1029.59380 -0.14 42.81 3378 3378 MS2 15/16 Linfeng_20130204_CTCF_9.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 396 2.76 0.00 0 22 50 2 515.30072 1029.59416 0.22 41.91 3798 3798 MS2 15/16 Linfeng_20130201_rIgG_2.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 464 2.76 0.00 0 12 50 2 651.33423 1301.66118 2.13 34.41 2462 2462 MS2 19/22 Linfeng_20130204_CTCF_10.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 488 2.75 0.00 0 22 50 2 651.33313 1301.65898 0.44 32.78 2897 2897 MS2 17/22 Linfeng_20130201_rIgG_1.raw High LEQEIATYR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 450 2.75 0.00 0 9 50 2 561.79266 1122.57805 -0.85 30.76 2681 2681 MS2 14/16 Linfeng_20130201_rIgG_3.raw High GQVGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P02533 M11(Oxidation) CID 1.0000 0.0000 1 1 339 2.75 0.00 0 14 50 3 701.33356 2101.98612 1.96 38.91 3491 3491 MS2 25/80 Linfeng_20130201_rIgG_2.raw High QRPAEIKDYSPYFK Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 460 2.75 0.00 2 6 50 3 581.30170 1741.89054 -0.18 36.26 3228 3228 MS2 18/52 Linfeng_20130201_rIgG_3.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 396 2.74 0.00 0 11 36 2 515.30023 1029.59319 -0.73 42.72 3372 3372 MS2 15/16 Linfeng_20130204_CTCF_8.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 484 2.72 0.00 0 35 50 2 651.33392 1301.66057 1.66 34.28 2288 2288 MS2 19/22 Linfeng_20130204_CTCF_4.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 236 2.70 0.00 1 29 50 2 532.80835 1064.60942 -0.46 32.37 2440 2440 MS2 12/16 Linfeng_20130204_CTCF_1.raw High QRPAEIKDYSPYFK Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 494 2.69 0.00 2 0 50 3 581.30121 1741.88907 -1.02 35.96 2798 2798 MS2 21/52 Linfeng_20130204_CTCF_1.raw High LLEGEDAHLSSSQFSSGSQSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 371 2.69 0.00 0 0 50 3 770.36273 2309.07364 4.13 34.50 2310 2310 MS2 18/84 Linfeng_20130204_CTCF_4.raw Medium VTmQNLNDRLASYLDKVR Unambiguous 3 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 493 2.68 0.00 2 18 10 4 538.78448 2152.11611 -0.88 48.07 4566 4566 MS2 23/102 Linfeng_20130201_rIgG_7.raw High APSTYGGGLSVSSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 382 2.68 0.00 0 16 50 2 713.35168 1425.69609 -0.57 30.60 2260 2260 MS2 16/28 Linfeng_20130204_CTCF_1.raw High TRLEQEIATYRR Unambiguous 5 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 501 2.67 0.00 2 19 50 3 512.61462 1535.82932 0.26 31.67 2768 2768 MS2 18/44 Linfeng_20130201_rIgG_2.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 479 2.66 0.00 1 32 50 3 460.57983 1379.72495 -2.07 36.02 3216 3216 MS2 21/40 Linfeng_20130201_rIgG_9.raw Medium QRPAEIKDYSPYFK Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 495 2.65 0.00 2 18 45 4 436.22769 1741.88894 -1.10 36.21 3224 3224 MS2 25/78 Linfeng_20130201_rIgG_10.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 318 2.64 0.00 1 8 50 2 532.80823 1064.60918 -0.69 32.58 2875 2875 MS2 14/16 Linfeng_20130201_rIgG_9.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 480 2.64 0.00 1 29 50 3 460.57990 1379.72513 -1.93 35.92 3289 3289 MS2 20/40 Linfeng_20130201_rIgG_7.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 394 2.63 0.00 0 13 50 2 515.30023 1029.59319 -0.73 43.10 3932 3932 MS2 15/16 Linfeng_20130201_rIgG_3.raw High TRLEQEIATYRR Unambiguous 5 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 501 2.63 0.00 2 13 50 3 512.61469 1535.82950 0.38 32.18 2826 2826 MS2 16/44 Linfeng_20130201_rIgG_10.raw High mSVEADINGLR Unambiguous 3 1 P02533 M1(Oxidation) CID 1.0000 0.0000 1 1 421 2.62 0.00 0 28 50 2 610.79993 1220.59258 -1.20 37.88 3390 3390 MS2 16/20 Linfeng_20130201_rIgG_3.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 538 2.60 0.00 1 20 50 3 460.58154 1379.73008 1.65 36.11 2452 2452 MS2 16/40 Linfeng_20130204_CTCF_6.raw High KDAEEWFFTK Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 301 2.59 0.00 1 18 50 2 650.81677 1300.62627 4.13 47.61 3669 3669 MS2 15/18 Linfeng_20130204_CTCF_6.raw High RLLEGEDAHLSSSQFSSGSQSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 403 2.59 0.00 1 0 50 3 822.39453 2465.16904 1.55 33.37 2398 2398 MS2 19/88 Linfeng_20130204_CTCF_7.raw High APSTYGGGLSVSSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 366 2.57 0.00 0 29 50 2 713.35229 1425.69731 0.29 29.64 2359 2359 MS2 18/28 Linfeng_20130201_rIgG_5.raw Medium QRPAEIKDYSPYFK Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 465 2.56 0.00 2 23 16 4 436.22809 1741.89052 -0.19 36.00 3020 3020 MS2 29/78 Linfeng_20130201_rIgG_5.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 313 2.55 0.00 1 20 50 2 532.80823 1064.60918 -0.69 32.90 2352 2352 MS2 13/16 Linfeng_20130204_CTCF_7.raw High VTmQNLNDR Unambiguous 4 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 379 2.54 0.00 0 21 50 2 553.76636 1106.52544 -0.45 17.17 998 998 MS2 13/16 Linfeng_20130201_rIgG_3.raw High QRPAEIKDYSPYFK Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 493 2.53 0.00 2 6 50 3 581.30127 1741.88926 -0.92 36.27 3213 3213 MS2 19/52 Linfeng_20130201_rIgG_4.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 237 2.53 0.00 1 17 50 2 532.80847 1064.60967 -0.23 32.53 2861 2861 MS2 14/16 Linfeng_20130201_rIgG_10.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 308 2.51 0.00 1 14 50 2 532.80768 1064.60808 -1.72 30.94 2696 2696 MS2 14/16 Linfeng_20130201_rIgG_2.raw High mSVEADINGLR Unambiguous 3 1 P02533 M1(Oxidation) CID 1.0000 0.0000 1 1 469 2.50 0.00 0 39 50 2 610.79926 1220.59123 -2.30 37.36 3354 3354 MS2 18/20 Linfeng_20130201_rIgG_1.raw High VTmQNLNDR Unambiguous 4 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 380 2.50 0.00 0 31 50 2 553.76611 1106.52495 -0.89 17.24 1017 1017 MS2 15/16 Linfeng_20130201_rIgG_7.raw High EVATNSELVQSGK Unambiguous 5 2 P02533;Q04695 CID 1.0000 0.0000 1 1 558 2.49 0.00 0 0 50 2 681.34851 1361.68974 -0.75 24.58 1851 1851 MS2 14/24 Linfeng_20130201_rIgG_5.raw High mSVEADINGLR Unambiguous 3 1 P02533 M1(Oxidation) CID 1.0000 0.0000 1 1 451 2.48 0.00 0 35 50 2 610.79962 1220.59197 -1.70 37.56 3351 3351 MS2 16/20 Linfeng_20130201_rIgG_2.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 302 2.47 0.00 1 9 50 2 532.80902 1064.61077 0.80 31.38 2529 2529 MS2 12/16 Linfeng_20130201_rIgG_5.raw High VTmQNLNDR Unambiguous 4 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 397 2.46 0.00 0 47 50 2 553.76642 1106.52556 -0.34 17.35 558 558 MS2 14/16 Linfeng_20130204_CTCF_8.raw High APSTYGGGLSVSSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 401 2.45 0.00 0 37 50 2 713.35419 1425.70110 2.94 30.85 2791 2791 MS2 16/28 Linfeng_20130201_rIgG_7.raw Medium TRLEQEIATYRR Unambiguous 5 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 496 2.45 0.00 2 30 50 3 512.61414 1535.82785 -0.69 32.47 2898 2898 MS2 17/44 Linfeng_20130201_rIgG_6.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 507 2.45 0.00 0 30 50 2 651.33276 1301.65825 -0.12 33.63 2981 2981 MS2 18/22 Linfeng_20130201_rIgG_1.raw Medium TRLEQEIATYRR Unambiguous 5 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 497 2.45 0.00 2 23 50 3 512.61426 1535.82822 -0.46 33.04 2696 2696 MS2 21/44 Linfeng_20130201_rIgG_5.raw Medium GQVGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P02533 M11(Oxidation) CID 1.0000 0.0000 1 1 297 2.43 0.00 0 21 50 3 701.32996 2101.97531 -3.18 39.09 3516 3516 MS2 26/80 Linfeng_20130201_rIgG_3.raw Medium TRLEQEIATYRR Unambiguous 5 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 497 2.40 0.00 2 30 50 3 512.61420 1535.82804 -0.58 32.17 2806 2806 MS2 17/44 Linfeng_20130201_rIgG_4.raw Medium TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 501 2.40 0.00 1 29 50 3 460.58060 1379.72724 -0.41 35.91 3159 3159 MS2 19/40 Linfeng_20130201_rIgG_8.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 237 2.39 0.00 1 12 50 2 532.80878 1064.61028 0.34 32.09 2810 2810 MS2 13/16 Linfeng_20130201_rIgG_2.raw Medium TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 495 2.39 0.00 1 62 39 3 460.58084 1379.72797 0.12 35.57 2973 2973 MS2 20/40 Linfeng_20130201_rIgG_5.raw Medium GQVGGDVNVEmDAAPGVDLSR Unambiguous 1 1 P02533 M11(Oxidation) CID 1.0000 0.0000 1 1 353 2.39 0.00 0 12 50 3 701.33319 2101.98502 1.43 39.12 3118 3118 MS2 18/80 Linfeng_20130204_CTCF_1.raw Medium TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 533 2.38 0.00 1 27 32 3 460.58026 1379.72623 -1.14 34.95 3111 3111 MS2 19/40 Linfeng_20130201_rIgG_1.raw High VTmQNLNDR Unambiguous 4 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 386 2.38 0.00 0 23 50 2 553.76636 1106.52544 -0.45 17.72 1045 1045 MS2 13/16 Linfeng_20130201_rIgG_5.raw High APSTYGGGLSVSSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 394 2.38 0.00 0 11 50 2 713.35162 1425.69597 -0.65 31.15 2135 2135 MS2 14/28 Linfeng_20130204_CTCF_10.raw Medium GQVGGDVNVEMDAAPGVDLSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 399 2.37 0.00 0 53 50 3 696.00189 2085.99112 1.93 44.27 3317 3317 MS2 23/80 Linfeng_20130204_CTCF_6.raw High VTmQNLNDR Unambiguous 4 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 385 2.36 0.00 0 10 50 2 553.76605 1106.52483 -1.00 17.08 543 543 MS2 14/16 Linfeng_20130204_CTCF_1.raw High VTmQNLNDR Unambiguous 4 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 375 2.35 0.00 0 26 50 2 553.76630 1106.52532 -0.56 17.07 989 989 MS2 14/16 Linfeng_20130201_rIgG_1.raw Medium TRLEQEIATYRR Unambiguous 5 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 500 2.34 0.00 2 42 50 3 512.61462 1535.82932 0.26 32.68 2660 2660 MS2 16/44 Linfeng_20130201_rIgG_5.raw High mSVEADINGLR Unambiguous 3 1 P02533 M1(Oxidation) CID 1.0000 0.0000 1 1 491 2.34 0.00 0 29 50 2 610.80035 1220.59343 -0.50 38.24 2668 2668 MS2 16/20 Linfeng_20130204_CTCF_6.raw High ALEEANADLEVK Unambiguous 7 2 P02533;P08779 CID 1.0000 0.0000 1 1 457 2.31 0.00 0 10 50 2 651.33453 1301.66179 2.60 33.70 2390 2390 MS2 14/22 Linfeng_20130204_CTCF_10.raw Medium TRLEQEIATYRR Unambiguous 5 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 506 2.28 0.00 2 8 50 3 512.61432 1535.82840 -0.34 32.77 2339 2339 MS2 15/44 Linfeng_20130204_CTCF_7.raw High VTMQNLNDR Unambiguous 4 3 P13645;P02533;P08779 CID 1.0000 0.0000 1 1 395 2.28 0.00 0 13 50 2 545.76813 1090.52898 -1.87 27.13 2288 2288 MS2 14/16 Linfeng_20130201_rIgG_9.raw High APSTYGGGLSVSSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 356 2.27 0.00 0 0 50 2 713.35223 1425.69719 0.20 30.54 2657 2657 MS2 16/28 Linfeng_20130201_rIgG_2.raw Medium TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 536 2.26 0.00 1 31 50 3 460.58057 1379.72715 -0.47 36.27 2682 2682 MS2 18/40 Linfeng_20130204_CTCF_7.raw High LAADDFR Unambiguous 14 5 P13645;P02533;P08779;Q04695;Q15323 CID 1.0000 0.0000 1 1 387 2.25 0.00 0 5 50 2 404.20294 807.39861 -1.22 28.82 2487 2487 MS2 11/12 Linfeng_20130201_rIgG_1.raw Medium TEELNREVATNSELVQSGK Unambiguous 5 2 P02533;Q04695 CID 1.0000 0.0000 1 1 441 2.25 0.00 1 0 50 3 702.02252 2104.05301 0.59 33.33 2196 2196 MS2 18/72 Linfeng_20130204_CTCF_4.raw High LASYLDK Unambiguous 10 5 P13645;P02533;P08779;Q04695;P35527 CID 1.0000 0.0000 1 1 292 2.25 0.00 0 17 50 2 405.22327 809.43926 -1.38 27.99 1648 1648 MS2 11/12 Linfeng_20130204_CTCF_6.raw Medium ILNEMRDQYEKMAEK Unambiguous 3 2 P02533;Q04695 CID 1.0000 0.0000 1 1 448 2.25 0.00 2 13 50 3 633.31085 1897.91800 1.72 38.52 2699 2699 MS2 18/56 Linfeng_20130204_CTCF_6.raw High VTmQNLNDR Unambiguous 4 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 356 2.20 0.00 0 26 50 2 553.76721 1106.52715 1.09 17.27 548 548 MS2 12/16 Linfeng_20130204_CTCF_7.raw High VTmQNLNDR Unambiguous 4 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 355 2.17 0.00 0 44 50 2 553.76691 1106.52654 0.54 17.17 977 977 MS2 15/16 Linfeng_20130201_rIgG_5.raw High mSVEADINGLRR Unambiguous 3 1 P02533 M1(Oxidation) CID 1.0000 0.0000 1 1 553 2.16 0.00 1 17 50 2 688.85382 1376.70036 3.78 34.58 2299 2299 MS2 9/22 Linfeng_20130204_CTCF_6.raw High LASYLDK Unambiguous 10 5 P13645;P02533;P08779;Q04695;P35527 CID 1.0000 0.0000 1 1 277 2.15 0.00 0 1 50 2 405.22366 809.44005 -0.40 28.44 2014 2014 MS2 11/12 Linfeng_20130204_CTCF_1.raw High mSVEADINGLRR Unambiguous 3 1 P02533 M1(Oxidation) CID 1.0000 0.0000 1 1 500 2.14 0.00 1 9 50 2 688.85083 1376.69438 -0.56 33.96 2998 2998 MS2 12/22 Linfeng_20130201_rIgG_3.raw High VTMQNLNDR Unambiguous 4 3 P13645;P02533;P08779 CID 1.0000 0.0000 1 1 391 2.14 0.00 0 5 50 2 545.76874 1090.53020 -0.75 27.10 1852 1852 MS2 13/16 Linfeng_20130204_CTCF_1.raw High VTmQNLNDR Unambiguous 4 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 354 2.13 0.00 0 0 50 2 553.76685 1106.52641 0.43 17.24 1005 1005 MS2 12/16 Linfeng_20130201_rIgG_9.raw High VTMQNLNDR Unambiguous 4 3 P13645;P02533;P08779 CID 1.0000 0.0000 1 1 403 2.13 0.00 0 12 50 2 545.76868 1090.53008 -0.87 27.21 2289 2289 MS2 12/16 Linfeng_20130201_rIgG_10.raw High LASYLDK Unambiguous 10 5 P13645;P02533;P08779;Q04695;P35527 CID 1.0000 0.0000 1 1 287 2.12 0.00 0 0 50 2 405.22348 809.43968 -0.85 34.21 2623 2623 MS2 9/12 Linfeng_20130204_CTCF_1.raw High ILNEmRDQYEK Unambiguous 3 2 P02533;Q04695 M5(Oxidation) CID 1.0000 0.0000 1 1 351 2.11 0.00 1 0 50 2 727.85028 1454.69328 -0.81 21.15 1468 1468 MS2 9/20 Linfeng_20130201_rIgG_5.raw High VTmQNLNDR Unambiguous 4 3 P13645;P02533;P08779 M3(Oxidation) CID 1.0000 0.0000 1 1 376 2.08 0.00 0 35 50 2 553.76636 1106.52544 -0.45 17.23 1003 1003 MS2 11/16 Linfeng_20130201_rIgG_10.raw High mSVEADINGLRR Unambiguous 3 1 P02533 M1(Oxidation) CID 1.0000 0.0000 1 1 489 2.03 0.00 1 4 50 2 688.84998 1376.69267 -1.80 33.88 2994 2994 MS2 10/22 Linfeng_20130201_rIgG_10.raw High LASYLDK Unambiguous 10 5 P13645;P02533;P08779;Q04695;P35527 CID 1.0000 0.0000 1 1 282 2.03 0.00 0 0 50 2 405.22336 809.43944 -1.15 27.42 1890 1890 MS2 9/12 Linfeng_20130204_CTCF_1.raw High APSTYGGGLSVSSSR Unambiguous 1 1 P02533 CID 1.0000 0.0000 1 1 373 2.02 0.00 0 21 50 2 713.35223 1425.69719 0.20 29.67 2569 2569 MS2 12/28 Linfeng_20130201_rIgG_3.raw E9PJD9 60S ribosomal protein L27a OS=Homo sapiens GN=RPL27A PE=3 SV=1 - [E9PJD9_HUMAN] 36.26 3 3 3 3 8.46 36.26 3 3 91 10.1 10.21 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High TGAAPIIDVVR Unambiguous 3 1 E9PJD9 CID 1.0000 0.0000 1 1 179 2.96 0.00 0 34 50 2 556.32660 1111.64592 -1.02 43.11 3409 3409 MS2 16/20 Linfeng_20130204_CTCF_9.raw High LWTLVSEQTR Unambiguous 3 1 E9PJD9 CID 1.0000 0.0000 1 1 622 2.80 0.00 0 25 38 2 616.83478 1232.66228 -0.92 47.20 3853 3853 MS2 14/18 Linfeng_20130204_CTCF_9.raw High NQSFcPTVNLDK Unambiguous 3 1 E9PJD9 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 296 2.70 0.00 0 19 50 2 711.83765 1422.66802 -0.16 37.54 2836 2836 MS2 14/22 Linfeng_20130204_CTCF_9.raw O60814 Histone H2B type 1-K OS=Homo sapiens GN=HIST1H2BK PE=1 SV=3 - [H2B1K_HUMAN] 32.54 11 1 4 9 0.00 22.42 32.54 4 9 126 13.9 10.32 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High AMGIMNSFVNDIFER Unambiguous 16 2 P06899;O60814 CID 1.0000 0.0000 1 1 328 3.20 0.00 0 0 50 2 872.41357 1743.81987 0.28 52.99 4498 4498 MS2 16/28 Linfeng_20130204_CTCF_9.raw High KESYSVYVYK Unambiguous 11 1 O60814 CID 1.0000 0.0000 1 1 469 2.88 0.00 1 0 50 2 633.32318 1265.63909 -1.70 32.40 2321 2321 MS2 12/18 Linfeng_20130204_CTCF_9.raw High LAHYNKR Unambiguous 15 2 P06899;O60814 CID 1.0000 0.0000 1 1 381 2.59 0.00 1 10 50 2 451.25339 901.49950 -0.87 15.36 304 304 MS2 11/12 Linfeng_20130204_CTCF_9.raw High KESYSVYVYK Unambiguous 11 1 O60814 CID 1.0000 0.0000 1 1 473 2.51 0.00 1 18 50 2 633.32196 1265.63664 -3.63 32.81 2301 2301 MS2 14/18 Linfeng_20130204_CTCF_10.raw High LLLPGELAK Unambiguous 16 2 P06899;O60814 CID 1.0000 0.0000 1 1 28 2.36 0.00 0 0 9 2 477.30499 953.60271 -0.36 46.35 3726 3726 MS2 13/16 Linfeng_20130204_CTCF_10.raw High LAHYNKR Unambiguous 15 2 P06899;O60814 CID 1.0000 0.0000 1 1 353 2.35 0.00 1 23 50 2 451.25375 901.50023 -0.06 15.43 302 302 MS2 11/12 Linfeng_20130204_CTCF_10.raw High LLLPGELAK Unambiguous 16 2 P06899;O60814 CID 1.0000 0.0000 1 1 30 2.24 0.00 0 7 39 2 477.30539 953.60350 0.47 45.89 3706 3706 MS2 13/16 Linfeng_20130204_CTCF_9.raw High KESYSVYVYK Unambiguous 11 1 O60814 CID 1.0000 0.0000 1 1 474 2.16 0.00 1 14 50 2 633.32336 1265.63945 -1.41 31.55 2237 2237 MS2 12/18 Linfeng_20130204_CTCF_9.raw High LLLPGELAK Unambiguous 16 2 P06899;O60814 CID 1.0000 0.0000 1 1 30 2.13 0.00 0 0 2 2 477.30463 953.60198 -1.13 46.95 3823 3823 MS2 13/16 Linfeng_20130204_CTCF_9.raw P55769 NHP2-like protein 1 OS=Homo sapiens GN=NHP2L1 PE=1 SV=3 - [NH2L1_HUMAN] 32.03 2 4 4 4 0.00 11.97 32.03 4 4 128 14.2 8.46 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High LLDLVQQScNYK Unambiguous 2 1 P55769 C9(Carbamidomethyl) CID 1.0000 0.0000 1 1 440 3.56 0.00 0 9 31 2 740.87720 1480.74712 0.43 43.50 3410 3410 MS2 19/22 Linfeng_20130204_CTCF_10.raw High QQIQSIQQSIER Unambiguous 2 1 P55769 CID 1.0000 0.0000 1 1 461 3.04 0.00 0 11 50 2 729.38861 1457.76995 -0.54 34.96 2517 2517 MS2 17/22 Linfeng_20130204_CTCF_10.raw High KLLDLVQQScNYK Unambiguous 2 1 P55769 C10(Carbamidomethyl) CID 1.0000 0.0000 1 1 520 2.74 0.00 1 23 50 3 536.95190 1608.84116 -0.18 42.40 3292 3292 MS2 17/48 Linfeng_20130204_CTCF_10.raw High AcGVSRPVIAcSVTIK Unambiguous 2 1 P55769 C2(Carbamidomethyl); C11(Carbamidomethyl) CID 1.0000 0.0000 1 1 590 2.64 0.00 1 7 44 3 573.30713 1717.90683 -1.18 36.34 2658 2658 MS2 20/60 Linfeng_20130204_CTCF_10.raw P06899 Histone H2B type 1-J OS=Homo sapiens GN=HIST1H2BJ PE=1 SV=3 - [H2B1J_HUMAN] 31.75 5 1 4 7 0.00 16.88 31.75 4 7 126 13.9 10.32 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High AMGIMNSFVNDIFER Unambiguous 16 2 P06899;O60814 CID 1.0000 0.0000 1 1 328 3.20 0.00 0 0 50 2 872.41357 1743.81987 0.28 52.99 4498 4498 MS2 16/28 Linfeng_20130204_CTCF_9.raw High LAHYNKR Unambiguous 15 2 P06899;O60814 CID 1.0000 0.0000 1 1 381 2.59 0.00 1 10 50 2 451.25339 901.49950 -0.87 15.36 304 304 MS2 11/12 Linfeng_20130204_CTCF_9.raw High LLLPGELAK Unambiguous 16 2 P06899;O60814 CID 1.0000 0.0000 1 1 28 2.36 0.00 0 0 9 2 477.30499 953.60271 -0.36 46.35 3726 3726 MS2 13/16 Linfeng_20130204_CTCF_10.raw High LAHYNKR Unambiguous 15 2 P06899;O60814 CID 1.0000 0.0000 1 1 353 2.35 0.00 1 23 50 2 451.25375 901.50023 -0.06 15.43 302 302 MS2 11/12 Linfeng_20130204_CTCF_10.raw High LLLPGELAK Unambiguous 16 2 P06899;O60814 CID 1.0000 0.0000 1 1 30 2.24 0.00 0 7 39 2 477.30539 953.60350 0.47 45.89 3706 3706 MS2 13/16 Linfeng_20130204_CTCF_9.raw High LLLPGELAK Unambiguous 16 2 P06899;O60814 CID 1.0000 0.0000 1 1 30 2.13 0.00 0 0 2 2 477.30463 953.60198 -1.13 46.95 3823 3823 MS2 13/16 Linfeng_20130204_CTCF_9.raw High ESYSIYVYK Unambiguous 5 1 P06899 CID 1.0000 0.0000 1 1 448 2.02 0.00 0 17 34 2 576.28564 1151.56401 1.82 39.77 3011 3011 MS2 11/16 Linfeng_20130204_CTCF_10.raw P0C0S5 Histone H2A.Z OS=Homo sapiens GN=H2AFZ PE=1 SV=2 - [H2AZ_HUMAN] 31.25 6 2 4 13 0.00 34.17 31.25 4 13 128 13.5 10.58 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High ATIAGGGVIPHIHK Unambiguous 4 1 P0C0S5 CID 1.0000 0.0000 1 1 253 4.16 0.00 0 12 50 2 685.89844 1370.78960 -0.56 32.93 2314 2314 MS2 20/26 Linfeng_20130204_CTCF_10.raw High GDEELDSLIK Unambiguous 6 1 P0C0S5 CID 1.0000 0.0000 1 1 517 3.28 0.00 0 19 20 2 559.78253 1118.55779 0.15 44.16 3482 3482 MS2 15/18 Linfeng_20130204_CTCF_10.raw High HLQLAIR Unambiguous 21 3 Q96KK5;Q16777;P0C0S5 CID 1.0000 0.0000 1 1 33 2.84 0.00 0 1 46 2 425.76617 850.52507 -0.83 34.18 2438 2438 MS2 12/12 Linfeng_20130204_CTCF_10.raw High AGLQFPVGR Unambiguous 19 3 Q96KK5;Q16777;P0C0S5 CID 1.0000 0.0000 1 1 518 2.70 0.00 0 16 50 2 472.76926 944.53124 -0.05 41.16 3159 3159 MS2 14/16 Linfeng_20130204_CTCF_10.raw High AGLQFPVGR Unambiguous 19 3 Q96KK5;Q16777;P0C0S5 CID 1.0000 0.0000 1 1 506 2.64 0.00 0 23 50 2 472.76926 944.53124 -0.05 41.20 2988 2988 MS2 14/16 Linfeng_20130204_CTCF_3.raw High AGLQFPVGR Unambiguous 19 3 Q96KK5;Q16777;P0C0S5 CID 1.0000 0.0000 1 1 525 2.60 0.00 0 12 26 2 472.76910 944.53093 -0.37 41.07 3185 3185 MS2 14/16 Linfeng_20130204_CTCF_8.raw High AGLQFPVGR Unambiguous 19 3 Q96KK5;Q16777;P0C0S5 CID 1.0000 0.0000 1 1 722 2.54 0.00 0 0 1 2 472.76984 944.53240 1.18 42.11 3262 3262 MS2 15/16 Linfeng_20130204_CTCF_10.raw High AGLQFPVGR Unambiguous 19 3 Q96KK5;Q16777;P0C0S5 CID 1.0000 0.0000 1 1 511 2.40 0.00 0 17 50 2 472.76874 944.53020 -1.15 41.10 3201 3201 MS2 14/16 Linfeng_20130204_CTCF_9.raw High HLQLAIR Unambiguous 21 3 Q96KK5;Q16777;P0C0S5 CID 1.0000 0.0000 1 1 47 2.35 0.00 0 11 50 2 425.76605 850.52483 -1.12 32.07 2227 2227 MS2 12/12 Linfeng_20130204_CTCF_10.raw High HLQLAIR Unambiguous 21 3 Q96KK5;Q16777;P0C0S5 CID 1.0000 0.0000 1 1 41 2.24 0.00 0 7 50 2 425.76563 850.52397 -2.13 33.38 2418 2418 MS2 12/12 Linfeng_20130204_CTCF_9.raw High HLQLAIR Unambiguous 21 3 Q96KK5;Q16777;P0C0S5 CID 1.0000 0.0000 1 1 45 2.20 0.00 0 4 50 2 425.76544 850.52361 -2.56 33.12 2334 2334 MS2 12/12 Linfeng_20130204_CTCF_10.raw High AGLQFPVGR Unambiguous 19 3 Q96KK5;Q16777;P0C0S5 CID 1.0000 0.0000 1 1 752 2.14 0.00 0 23 50 2 472.77063 944.53398 2.86 41.19 2990 2990 MS2 12/16 Linfeng_20130204_CTCF_6.raw High AGLQFPVGR Unambiguous 19 3 Q96KK5;Q16777;P0C0S5 CID 1.0000 0.0000 1 1 754 2.07 0.00 0 39 50 2 472.76978 944.53227 1.05 41.30 2996 2996 MS2 13/16 Linfeng_20130204_CTCF_4.raw B4DW05 Prohibitin-2 OS=Homo sapiens GN=PHB2 PE=2 SV=1 - [B4DW05_HUMAN] 30.99 6 5 5 7 23.96 30.99 5 7 0.00 213 23.7 9.23 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High IGGVQQDTILAEGLHFR Unambiguous 5 1 B4DW05 CID 1.0000 0.0000 1 1 399 4.92 0.00 0 16 50 3 618.66779 1853.98880 1.02 51.87 4973 4973 MS2 28/64 Linfeng_20130201_rIgG_6.raw High VLSRPNAQELPSmYQR Unambiguous 6 1 B4DW05 M13(Oxidation) CID 1.0000 0.0000 1 1 507 3.61 0.00 1 22 50 3 635.66107 1904.96866 2.03 31.34 2787 2787 MS2 25/60 Linfeng_20130201_rIgG_6.raw High VLSRPNAQELPSMYQR Unambiguous 6 1 B4DW05 CID 1.0000 0.0000 1 1 503 3.60 0.00 1 11 50 3 630.32886 1888.97202 1.14 37.17 3364 3364 MS2 28/60 Linfeng_20130201_rIgG_6.raw High FNASQLITQR Unambiguous 6 1 B4DW05 CID 1.0000 0.0000 1 1 505 3.48 0.00 0 20 50 2 589.32037 1177.63347 0.87 42.03 3861 3861 MS2 17/18 Linfeng_20130201_rIgG_6.raw High LLLGAGAVAYGVR Unambiguous 6 1 B4DW05 CID 1.0000 0.0000 1 1 205 3.43 0.00 0 20 50 2 630.37689 1259.74651 -0.47 48.81 4614 4614 MS2 22/24 Linfeng_20130201_rIgG_6.raw High DLQmVNISLR Unambiguous 5 1 B4DW05 M4(Oxidation) CID 1.0000 0.0000 1 1 569 2.66 0.00 0 45 50 2 602.82092 1204.63457 -0.77 42.77 3936 3936 MS2 14/18 Linfeng_20130201_rIgG_6.raw Medium VLSRPNAQELPSmYQR Unambiguous 6 1 B4DW05 M13(Oxidation) CID 1.0000 0.0000 1 1 526 2.26 0.00 1 12 50 3 635.65948 1904.96390 -0.46 31.91 2842 2842 MS2 21/60 Linfeng_20130201_rIgG_6.raw Q04695 "Keratin, type I cytoskeletal 17 OS=Homo sapiens GN=KRT17 PE=1 SV=2 - [K1C17_HUMAN]" 30.79 6 4 16 109 199.62 18.29 10 64 139.55 29.17 13 45 432 48.1 5.02 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High TEELNREVATNSELVQSGK Unambiguous 5 2 P02533;Q04695 CID 1.0000 0.0000 1 1 437 5.30 0.00 1 6 50 3 702.02252 2104.05301 0.59 32.94 2686 2686 MS2 32/72 Linfeng_20130201_rIgG_5.raw High TEELNREVATNSELVQSGK Unambiguous 5 2 P02533;Q04695 CID 1.0000 0.0000 1 1 431 5.19 0.00 1 0 50 3 702.02124 2104.04917 -1.23 33.11 2897 2897 MS2 34/72 Linfeng_20130201_rIgG_4.raw High TEELNREVATNSELVQSGK Unambiguous 5 2 P02533;Q04695 CID 1.0000 0.0000 1 1 452 5.17 0.00 1 6 46 3 702.02155 2104.05008 -0.80 33.22 2161 2161 MS2 25/72 Linfeng_20130204_CTCF_6.raw High TEELNREVATNSELVQSGK Unambiguous 5 2 P02533;Q04695 CID 1.0000 0.0000 1 1 432 5.02 0.00 1 68 50 3 702.02124 2104.04917 -1.23 32.89 2896 2896 MS2 31/72 Linfeng_20130201_rIgG_10.raw High TEELNREVATNSELVQSGK Unambiguous 5 2 P02533;Q04695 CID 1.0000 0.0000 1 1 451 4.88 0.00 1 0 50 3 702.02258 2104.05320 0.68 32.74 2874 2874 MS2 35/72 Linfeng_20130201_rIgG_2.raw High TEELNREVATNSELVQSGK Unambiguous 5 2 P02533;Q04695 CID 1.0000 0.0000 1 1 444 4.76 0.00 1 4 50 3 702.02148 2104.04990 -0.88 33.03 2919 2919 MS2 34/72 Linfeng_20130201_rIgG_9.raw High TEELNREVATNSELVQSGK Unambiguous 5 2 P02533;Q04695 CID 1.0000 0.0000 1 1 454 4.63 0.00 1 13 50 3 702.02081 2104.04789 -1.84 33.18 2968 2968 MS2 27/72 Linfeng_20130201_rIgG_6.raw High TEELNREVATNSELVQSGK Unambiguous 5 2 P02533;Q04695 CID 1.0000 0.0000 1 1 469 4.57 0.00 1 7 50 3 702.02179 2104.05082 -0.45 32.85 2904 2904 MS2 30/72 Linfeng_20130201_rIgG_1.raw High TEELNREVATNSELVQSGK Unambiguous 5 2 P02533;Q04695 CID 1.0000 0.0000 1 1 462 4.27 0.00 1 0 50 3 702.02216 2104.05191 0.07 33.07 2910 2910 MS2 29/72 Linfeng_20130201_rIgG_3.raw High GQVGGEINVEmDAAPGVDLSR Unambiguous 2 1 Q04695 M11(Oxidation) CID 1.0000 0.0000 1 1 315 4.14 0.00 0 0 50 2 1065.51160 2130.01592 1.23 42.52 3130 3130 MS2 22/40 Linfeng_20130204_CTCF_6.raw High TEELNREVATNSELVQSGK Unambiguous 5 2 P02533;Q04695 CID 1.0000 0.0000 1 1 435 3.96 0.00 1 0 50 2 1052.53333 2104.05937 3.62 33.50 2190 2190 MS2 20/36 Linfeng_20130204_CTCF_6.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 492 3.94 0.00 1 22 50 2 690.36725 1379.72722 -0.42 35.70 2726 2726 MS2 17/20 Linfeng_20130204_CTCF_2.raw High TEELNREVATNSELVQSGK Unambiguous 5 2 P02533;Q04695 CID 1.0000 0.0000 1 1 451 3.94 0.00 1 0 50 3 702.02106 2104.04862 -1.49 33.10 2472 2472 MS2 25/72 Linfeng_20130204_CTCF_2.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 520 3.89 0.00 1 18 50 2 690.36694 1379.72661 -0.86 36.41 2664 2664 MS2 17/20 Linfeng_20130204_CTCF_10.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 525 3.76 0.00 1 11 50 2 690.36841 1379.72954 1.26 36.24 2679 2679 MS2 17/20 Linfeng_20130204_CTCF_7.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 479 3.68 0.00 1 0 50 2 690.36774 1379.72820 0.29 36.06 2468 2468 MS2 16/20 Linfeng_20130204_CTCF_3.raw High TRLEQEIATYRR Unambiguous 5 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 452 3.62 0.00 2 8 50 3 512.61389 1535.82712 -1.17 32.08 2811 2811 MS2 19/44 Linfeng_20130201_rIgG_3.raw High TEELNREVATNSELVQSGK Unambiguous 5 2 P02533;Q04695 CID 1.0000 0.0000 1 1 469 3.61 0.00 1 5 50 3 702.02185 2104.05100 -0.36 33.24 2405 2405 MS2 26/72 Linfeng_20130204_CTCF_9.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 517 3.60 0.00 1 7 50 2 690.36871 1379.73015 1.70 36.23 2702 2702 MS2 16/20 Linfeng_20130204_CTCF_9.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 477 3.57 0.00 1 12 50 2 690.36737 1379.72746 -0.24 35.61 3146 3146 MS2 17/20 Linfeng_20130201_rIgG_4.raw High RVLDELTLAR Unambiguous 9 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 409 3.56 0.00 1 47 50 2 593.35095 1185.69463 -0.37 40.44 2906 2906 MS2 16/18 Linfeng_20130204_CTCF_6.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 520 3.55 0.00 1 10 50 2 690.36847 1379.72966 1.35 35.81 3148 3148 MS2 17/20 Linfeng_20130201_rIgG_8.raw High TEELNREVATNSELVQSGK Unambiguous 5 2 P02533;Q04695 CID 1.0000 0.0000 1 1 447 3.54 0.00 1 16 50 3 702.02142 2104.04972 -0.97 33.45 2366 2366 MS2 25/72 Linfeng_20130204_CTCF_10.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 504 3.48 0.00 1 4 50 2 690.36700 1379.72673 -0.77 35.58 3161 3161 MS2 16/20 Linfeng_20130201_rIgG_10.raw High TEELNREVATNSELVQSGK Unambiguous 5 2 P02533;Q04695 CID 1.0000 0.0000 1 1 454 3.44 0.00 1 0 50 3 702.02161 2104.05027 -0.71 33.21 2189 2189 MS2 23/72 Linfeng_20130204_CTCF_3.raw High ALEEANTELEVK Unambiguous 1 1 Q04695 CID 1.0000 0.0000 1 1 528 3.43 0.00 0 20 50 2 673.34674 1345.68620 1.18 34.66 2308 2308 MS2 18/22 Linfeng_20130204_CTCF_6.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 449 3.40 0.00 1 18 50 2 690.36963 1379.73198 3.03 36.10 2451 2451 MS2 17/20 Linfeng_20130204_CTCF_6.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 490 3.39 0.00 1 12 50 2 690.36731 1379.72734 -0.33 35.27 2728 2728 MS2 17/20 Linfeng_20130204_CTCF_1.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 532 3.37 0.00 1 8 50 2 690.36853 1379.72978 1.44 36.19 2476 2476 MS2 16/20 Linfeng_20130204_CTCF_4.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 561 3.35 0.00 0 14 50 2 515.30219 1029.59709 3.06 42.70 3141 3141 MS2 15/16 Linfeng_20130204_CTCF_4.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 452 3.34 0.00 1 30 46 2 690.36908 1379.73088 2.23 35.54 2970 2970 MS2 17/20 Linfeng_20130201_rIgG_5.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 398 3.34 0.00 0 34 50 2 515.30035 1029.59343 -0.50 42.30 3399 3399 MS2 15/16 Linfeng_20130204_CTCF_2.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 472 3.34 0.00 1 7 50 2 690.36823 1379.72917 0.99 35.07 3102 3102 MS2 17/20 Linfeng_20130201_rIgG_2.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 461 3.31 0.00 1 0 50 2 690.36749 1379.72771 -0.07 34.84 3100 3100 MS2 17/20 Linfeng_20130201_rIgG_1.raw High EVATNSELVQSGK Unambiguous 5 2 P02533;Q04695 CID 1.0000 0.0000 1 1 540 3.30 0.00 0 18 50 2 681.34906 1361.69084 0.06 24.65 1326 1326 MS2 17/24 Linfeng_20130204_CTCF_6.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 533 3.29 0.00 1 21 36 3 460.58038 1379.72660 -0.87 35.72 3157 3157 MS2 20/40 Linfeng_20130201_rIgG_4.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 377 3.28 0.00 0 8 20 2 515.30042 1029.59355 -0.38 41.88 3730 3730 MS2 15/16 Linfeng_20130201_rIgG_5.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 392 3.27 0.00 0 7 28 2 515.30048 1029.59368 -0.26 42.20 3839 3839 MS2 15/16 Linfeng_20130201_rIgG_3.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 303 3.26 0.00 0 7 35 2 515.30078 1029.59429 0.33 42.20 3828 3828 MS2 15/16 Linfeng_20130201_rIgG_4.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 304 3.23 0.00 0 13 38 2 515.30090 1029.59453 0.57 41.81 3827 3827 MS2 15/16 Linfeng_20130201_rIgG_1.raw High ILNEmRDQYEK Unambiguous 3 2 P02533;Q04695 M5(Oxidation) CID 1.0000 0.0000 1 1 358 3.23 0.00 1 0 50 2 727.85046 1454.69365 -0.56 21.75 1540 1540 MS2 14/20 Linfeng_20130201_rIgG_5.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 465 3.22 0.00 1 23 50 3 460.57971 1379.72458 -2.33 35.86 3189 3189 MS2 21/40 Linfeng_20130201_rIgG_10.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 310 3.20 0.00 1 1 50 2 532.80969 1064.61211 2.06 32.85 2123 2123 MS2 15/16 Linfeng_20130204_CTCF_6.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 402 3.17 0.00 0 31 50 2 515.30060 1029.59392 -0.02 42.64 3137 3137 MS2 15/16 Linfeng_20130204_CTCF_3.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 513 3.17 0.00 1 31 50 2 690.36664 1379.72600 -1.31 36.13 3230 3230 MS2 17/20 Linfeng_20130201_rIgG_1.raw High TRLEQEIATYRR Unambiguous 5 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 454 3.15 0.00 2 2 50 3 512.61371 1535.82657 -1.53 32.19 2383 2383 MS2 16/44 Linfeng_20130204_CTCF_2.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 391 3.11 0.00 0 8 25 2 515.30023 1029.59319 -0.73 43.22 3897 3897 MS2 15/16 Linfeng_20130201_rIgG_5.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 398 3.09 0.00 0 24 40 2 515.30048 1029.59368 -0.26 42.40 3884 3884 MS2 15/16 Linfeng_20130201_rIgG_8.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 481 3.09 0.00 1 0 50 2 690.36761 1379.72795 0.11 35.39 3140 3140 MS2 17/20 Linfeng_20130201_rIgG_3.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 484 3.09 0.00 1 23 50 2 690.36737 1379.72746 -0.24 35.83 3280 3280 MS2 17/20 Linfeng_20130201_rIgG_7.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 506 3.08 0.00 1 13 50 2 690.36700 1379.72673 -0.77 35.79 3193 3193 MS2 17/20 Linfeng_20130201_rIgG_9.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 516 3.04 0.00 1 20 50 2 690.36877 1379.73027 1.79 35.92 3238 3238 MS2 16/20 Linfeng_20130201_rIgG_6.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 395 2.99 0.00 0 26 50 2 515.30060 1029.59392 -0.02 42.19 3841 3841 MS2 15/16 Linfeng_20130201_rIgG_10.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 244 2.97 0.00 1 11 50 2 532.80872 1064.61016 0.23 32.63 2965 2965 MS2 14/16 Linfeng_20130201_rIgG_7.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 528 2.96 0.00 1 21 31 3 460.58038 1379.72660 -0.87 35.68 3169 3169 MS2 21/40 Linfeng_20130201_rIgG_3.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 294 2.96 0.00 0 7 50 2 515.30078 1029.59429 0.33 42.68 3339 3339 MS2 15/16 Linfeng_20130204_CTCF_7.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 525 2.94 0.00 1 32 50 3 460.58029 1379.72632 -1.07 36.08 3254 3254 MS2 19/40 Linfeng_20130201_rIgG_6.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 524 2.94 0.00 0 30 50 2 515.30115 1029.59502 1.05 43.00 3356 3356 MS2 15/16 Linfeng_20130204_CTCF_10.raw High TRLEQEIATYRR Unambiguous 5 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 466 2.93 0.00 2 7 50 3 512.61365 1535.82639 -1.65 32.40 2942 2942 MS2 17/44 Linfeng_20130201_rIgG_7.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 240 2.93 0.00 1 8 50 2 532.80853 1064.60979 -0.12 32.41 2844 2844 MS2 14/16 Linfeng_20130201_rIgG_3.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 551 2.92 0.00 0 5 50 2 515.30115 1029.59502 1.05 42.36 3949 3949 MS2 15/16 Linfeng_20130201_rIgG_7.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 312 2.92 0.00 1 26 50 2 532.80811 1064.60893 -0.92 32.62 2913 2913 MS2 14/16 Linfeng_20130201_rIgG_6.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 411 2.91 0.00 0 19 50 2 515.29987 1029.59245 -1.44 42.31 3857 3857 MS2 15/16 Linfeng_20130201_rIgG_9.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 307 2.90 0.00 1 8 50 2 532.80908 1064.61089 0.92 32.38 2629 2629 MS2 15/16 Linfeng_20130201_rIgG_5.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 401 2.88 0.00 0 7 50 2 515.29980 1029.59233 -1.56 42.13 3429 3429 MS2 15/16 Linfeng_20130204_CTCF_1.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 299 2.88 0.00 0 4 32 2 515.30103 1029.59477 0.81 42.43 3121 3121 MS2 15/16 Linfeng_20130204_CTCF_6.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 306 2.86 0.00 1 9 50 2 532.80939 1064.61150 1.49 31.79 2017 2017 MS2 14/16 Linfeng_20130204_CTCF_6.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 307 2.85 0.00 1 38 50 2 532.80811 1064.60893 -0.92 33.12 2333 2333 MS2 14/16 Linfeng_20130204_CTCF_10.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 392 2.84 0.00 0 11 50 2 515.30042 1029.59355 -0.38 42.31 3890 3890 MS2 15/16 Linfeng_20130201_rIgG_6.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 303 2.82 0.00 1 21 50 2 532.80823 1064.60918 -0.69 32.70 2972 2972 MS2 13/16 Linfeng_20130201_rIgG_7.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 394 2.81 0.00 0 7 50 2 515.30054 1029.59380 -0.14 42.81 3378 3378 MS2 15/16 Linfeng_20130204_CTCF_9.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 396 2.76 0.00 0 22 50 2 515.30072 1029.59416 0.22 41.91 3798 3798 MS2 15/16 Linfeng_20130201_rIgG_2.raw High LEQEIATYR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 450 2.75 0.00 0 9 50 2 561.79266 1122.57805 -0.85 30.76 2681 2681 MS2 14/16 Linfeng_20130201_rIgG_3.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 396 2.74 0.00 0 11 36 2 515.30023 1029.59319 -0.73 42.72 3372 3372 MS2 15/16 Linfeng_20130204_CTCF_8.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 236 2.70 0.00 1 29 50 2 532.80835 1064.60942 -0.46 32.37 2440 2440 MS2 12/16 Linfeng_20130204_CTCF_1.raw High LLEGEDAHLTQYK Unambiguous 3 1 Q04695 CID 1.0000 0.0000 1 1 559 2.67 0.00 0 3 50 3 506.26080 1516.76786 2.38 33.28 2168 2168 MS2 22/48 Linfeng_20130204_CTCF_6.raw High TRLEQEIATYRR Unambiguous 5 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 501 2.67 0.00 2 19 50 3 512.61462 1535.82932 0.26 31.67 2768 2768 MS2 18/44 Linfeng_20130201_rIgG_2.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 479 2.66 0.00 1 32 50 3 460.57983 1379.72495 -2.07 36.02 3216 3216 MS2 21/40 Linfeng_20130201_rIgG_9.raw High TIVEEVQDGKVISSR Unambiguous 2 1 Q04695 CID 1.0000 0.0000 1 1 474 2.65 0.00 1 2 50 3 553.96887 1659.89206 0.48 32.99 2137 2137 MS2 20/56 Linfeng_20130204_CTCF_6.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 318 2.64 0.00 1 8 50 2 532.80823 1064.60918 -0.69 32.58 2875 2875 MS2 14/16 Linfeng_20130201_rIgG_9.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 480 2.64 0.00 1 29 50 3 460.57990 1379.72513 -1.93 35.92 3289 3289 MS2 20/40 Linfeng_20130201_rIgG_7.raw High VLDELTLAR Unambiguous 11 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 394 2.63 0.00 0 13 50 2 515.30023 1029.59319 -0.73 43.10 3932 3932 MS2 15/16 Linfeng_20130201_rIgG_3.raw High TRLEQEIATYRR Unambiguous 5 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 501 2.63 0.00 2 13 50 3 512.61469 1535.82950 0.38 32.18 2826 2826 MS2 16/44 Linfeng_20130201_rIgG_10.raw High TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 538 2.60 0.00 1 20 50 3 460.58154 1379.73008 1.65 36.11 2452 2452 MS2 16/40 Linfeng_20130204_CTCF_6.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 313 2.55 0.00 1 20 50 2 532.80823 1064.60918 -0.69 32.90 2352 2352 MS2 13/16 Linfeng_20130204_CTCF_7.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 237 2.53 0.00 1 17 50 2 532.80847 1064.60967 -0.23 32.53 2861 2861 MS2 14/16 Linfeng_20130201_rIgG_10.raw High TIVEEVQDGKVISSR Unambiguous 2 1 Q04695 CID 1.0000 0.0000 1 1 484 2.52 0.00 1 12 50 3 553.96881 1659.89188 0.37 37.05 2547 2547 MS2 19/56 Linfeng_20130204_CTCF_6.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 308 2.51 0.00 1 14 50 2 532.80768 1064.60808 -1.72 30.94 2696 2696 MS2 14/16 Linfeng_20130201_rIgG_2.raw High EVATNSELVQSGK Unambiguous 5 2 P02533;Q04695 CID 1.0000 0.0000 1 1 558 2.49 0.00 0 0 50 2 681.34851 1361.68974 -0.75 24.58 1851 1851 MS2 14/24 Linfeng_20130201_rIgG_5.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 302 2.47 0.00 1 9 50 2 532.80902 1064.61077 0.80 31.38 2529 2529 MS2 12/16 Linfeng_20130201_rIgG_5.raw Medium TRLEQEIATYRR Unambiguous 5 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 496 2.45 0.00 2 30 50 3 512.61414 1535.82785 -0.69 32.47 2898 2898 MS2 17/44 Linfeng_20130201_rIgG_6.raw Medium TRLEQEIATYRR Unambiguous 5 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 497 2.45 0.00 2 23 50 3 512.61426 1535.82822 -0.46 33.04 2696 2696 MS2 21/44 Linfeng_20130201_rIgG_5.raw Medium TRLEQEIATYRR Unambiguous 5 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 497 2.40 0.00 2 30 50 3 512.61420 1535.82804 -0.58 32.17 2806 2806 MS2 17/44 Linfeng_20130201_rIgG_4.raw Medium TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 501 2.40 0.00 1 29 50 3 460.58060 1379.72724 -0.41 35.91 3159 3159 MS2 19/40 Linfeng_20130201_rIgG_8.raw High LASYLDKVR Unambiguous 9 4 P13645;P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 237 2.39 0.00 1 12 50 2 532.80878 1064.61028 0.34 32.09 2810 2810 MS2 13/16 Linfeng_20130201_rIgG_2.raw Medium TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 495 2.39 0.00 1 62 39 3 460.58084 1379.72797 0.12 35.57 2973 2973 MS2 20/40 Linfeng_20130201_rIgG_5.raw Medium TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 533 2.38 0.00 1 27 32 3 460.58026 1379.72623 -1.14 34.95 3111 3111 MS2 19/40 Linfeng_20130201_rIgG_1.raw High ALEEANTELEVK Unambiguous 1 1 Q04695 CID 1.0000 0.0000 1 1 548 2.36 0.00 0 38 50 2 673.34583 1345.68437 -0.18 34.38 3054 3054 MS2 13/22 Linfeng_20130201_rIgG_1.raw Medium TRLEQEIATYRR Unambiguous 5 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 500 2.34 0.00 2 42 50 3 512.61462 1535.82932 0.26 32.68 2660 2660 MS2 16/44 Linfeng_20130201_rIgG_5.raw Medium TRLEQEIATYRR Unambiguous 5 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 506 2.28 0.00 2 8 50 3 512.61432 1535.82840 -0.34 32.77 2339 2339 MS2 15/44 Linfeng_20130204_CTCF_7.raw Medium TRLEQEIATYR Unambiguous 10 3 P02533;P08779;Q04695 CID 1.0000 0.0000 1 1 536 2.26 0.00 1 31 50 3 460.58057 1379.72715 -0.47 36.27 2682 2682 MS2 18/40 Linfeng_20130204_CTCF_7.raw High LAADDFR Unambiguous 14 5 P13645;P02533;P08779;Q04695;Q15323 CID 1.0000 0.0000 1 1 387 2.25 0.00 0 5 50 2 404.20294 807.39861 -1.22 28.82 2487 2487 MS2 11/12 Linfeng_20130201_rIgG_1.raw Medium TEELNREVATNSELVQSGK Unambiguous 5 2 P02533;Q04695 CID 1.0000 0.0000 1 1 441 2.25 0.00 1 0 50 3 702.02252 2104.05301 0.59 33.33 2196 2196 MS2 18/72 Linfeng_20130204_CTCF_4.raw High LASYLDK Unambiguous 10 5 P13645;P02533;P08779;Q04695;P35527 CID 1.0000 0.0000 1 1 292 2.25 0.00 0 17 50 2 405.22327 809.43926 -1.38 27.99 1648 1648 MS2 11/12 Linfeng_20130204_CTCF_6.raw Medium ILNEMRDQYEKMAEK Unambiguous 3 2 P02533;Q04695 CID 1.0000 0.0000 1 1 448 2.25 0.00 2 13 50 3 633.31085 1897.91800 1.72 38.52 2699 2699 MS2 18/56 Linfeng_20130204_CTCF_6.raw High LASYLDK Unambiguous 10 5 P13645;P02533;P08779;Q04695;P35527 CID 1.0000 0.0000 1 1 277 2.15 0.00 0 1 50 2 405.22366 809.44005 -0.40 28.44 2014 2014 MS2 11/12 Linfeng_20130204_CTCF_1.raw High LASYLDK Unambiguous 10 5 P13645;P02533;P08779;Q04695;P35527 CID 1.0000 0.0000 1 1 287 2.12 0.00 0 0 50 2 405.22348 809.43968 -0.85 34.21 2623 2623 MS2 9/12 Linfeng_20130204_CTCF_1.raw High ILNEmRDQYEK Unambiguous 3 2 P02533;Q04695 M5(Oxidation) CID 1.0000 0.0000 1 1 351 2.11 0.00 1 0 50 2 727.85028 1454.69328 -0.81 21.15 1468 1468 MS2 9/20 Linfeng_20130201_rIgG_5.raw High LASYLDK Unambiguous 10 5 P13645;P02533;P08779;Q04695;P35527 CID 1.0000 0.0000 1 1 282 2.03 0.00 0 0 50 2 405.22336 809.43944 -1.15 27.42 1890 1890 MS2 9/12 Linfeng_20130204_CTCF_1.raw P61353 60S ribosomal protein L27 OS=Homo sapiens GN=RPL27 PE=1 SV=2 - [RL27_HUMAN] 30.15 1 3 3 4 10.29 30.15 3 4 136 15.8 10.56 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High VYNYNHLMPTR Unambiguous 1 1 P61353 CID 1.0000 0.0000 1 1 389 3.07 0.00 0 41 50 2 704.34503 1407.68279 -0.73 35.18 2596 2596 MS2 14/20 Linfeng_20130204_CTCF_9.raw High NIDDGTSDRPYSHALVAGIDR Unambiguous 1 1 P61353 CID 1.0000 0.0000 1 1 438 3.01 0.00 1 26 21 3 758.03717 2272.09696 0.70 37.73 2855 2855 MS2 26/80 Linfeng_20130204_CTCF_9.raw High YSVDIPLDK Unambiguous 1 1 P61353 CID 1.0000 0.0000 1 1 588 2.16 0.00 0 51 50 2 525.27655 1049.54582 -5.30 42.08 3303 3303 MS2 14/16 Linfeng_20130204_CTCF_9.raw High YSVDIPLDK Unambiguous 1 1 P61353 CID 1.0000 0.0000 1 1 520 2.05 0.00 0 38 50 2 525.27832 1049.54936 -1.93 42.60 3313 3313 MS2 12/16 Linfeng_20130204_CTCF_10.raw H0Y653 Nucleolar protein 56 (Fragment) OS=Homo sapiens GN=NOP56 PE=4 SV=1 - [H0Y653_HUMAN] 29.22 4 5 5 6 20.50 29.22 5 6 219 24.2 9.44 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High EAMVQAEEAAAEITR Unambiguous 4 1 H0Y653 CID 1.0000 0.0000 1 1 380 4.45 0.00 0 2 50 2 809.89087 1618.77446 0.15 46.50 3531 3531 MS2 23/28 Linfeng_20130204_CTCF_4.raw High EAmVQAEEAAAEITR Unambiguous 4 1 H0Y653 M3(Oxidation) CID 1.0000 0.0000 1 1 335 3.98 0.00 0 0 50 2 817.89026 1634.77324 2.52 38.04 2662 2662 MS2 20/28 Linfeng_20130204_CTCF_4.raw High YPASTVQILGAEK Unambiguous 4 1 H0Y653 CID 1.0000 0.0000 1 1 483 3.78 0.00 0 4 50 2 688.87500 1376.74272 0.48 40.78 2944 2944 MS2 21/24 Linfeng_20130204_CTCF_4.raw High LSFYETGEIPR Unambiguous 4 1 H0Y653 CID 1.0000 0.0000 1 1 416 2.99 0.00 0 15 50 2 656.33392 1311.66057 1.97 45.60 3438 3438 MS2 18/20 Linfeng_20130204_CTCF_4.raw High YGLIFHSTFIGR Unambiguous 4 1 H0Y653 CID 1.0000 0.0000 1 1 352 2.94 0.00 0 7 50 3 470.92328 1410.75528 1.70 51.18 4029 4029 MS2 19/44 Linfeng_20130204_CTCF_4.raw Medium LIAHAGSLTNLAK Unambiguous 4 1 H0Y653 CID 1.0000 0.0000 1 1 169 2.37 0.00 0 12 50 3 436.92627 1308.76426 0.60 34.26 2286 2286 MS2 21/48 Linfeng_20130204_CTCF_4.raw F8VQY6 60S acidic ribosomal protein P0 OS=Homo sapiens GN=RPLP0 PE=3 SV=1 - [F8VQY6_HUMAN] 28.87 7 3 3 4 13.06 28.87 3 4 142 15.8 9.51 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High AGAIAPcEVTVPAQNTGLGPEK Unambiguous 7 1 F8VQY6 C7(Carbamidomethyl) CID 1.0000 0.0000 1 1 534 3.93 0.00 0 26 21 3 727.37225 2180.10221 0.23 40.63 2927 2927 MS2 27/84 Linfeng_20130204_CTCF_6.raw High AGAIAPcEVTVPAQNTGLGPEK Unambiguous 7 1 F8VQY6 C7(Carbamidomethyl) CID 1.0000 0.0000 1 1 378 3.47 0.00 0 0 50 2 1090.55676 2180.10625 2.08 40.75 2940 2940 MS2 24/42 Linfeng_20130204_CTCF_6.raw High IIQLLDDYPK Unambiguous 7 1 F8VQY6 CID 1.0000 0.0000 1 1 376 3.13 0.00 0 23 50 2 609.34705 1217.68682 7.52 49.84 3907 3907 MS2 16/18 Linfeng_20130204_CTCF_6.raw High GNVGFVFTK Unambiguous 7 1 F8VQY6 CID 1.0000 0.0000 1 1 392 2.52 0.00 0 16 50 2 484.76419 968.52110 1.10 41.84 3059 3059 MS2 15/16 Linfeng_20130204_CTCF_6.raw B7Z4V2 "Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=2 SV=1 - [B7Z4V2_HUMAN]" 26.02 3 12 12 28 46.46 21.80 10 13 51.42 26.02 12 15 665 72.4 5.94 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High VINEPTAAALAYGLDK Unambiguous 3 1 B7Z4V2 CID 1.0000 0.0000 1 1 398 5.34 0.00 0 0 34 2 823.44733 1645.88738 4.70 49.45 3846 3846 MS2 25/30 Linfeng_20130204_CTCF_4.raw High GAVVGIDLGTTNScVAVMEGK Unambiguous 2 1 B7Z4V2 C14(Carbamidomethyl) CID 1.0000 0.0000 1 1 380 5.22 0.00 0 0 50 2 1039.51636 2078.02544 -0.16 50.86 3997 3997 MS2 26/40 Linfeng_20130204_CTCF_4.raw High GAVVGIDLGTTNScVAVMEGK Unambiguous 2 1 B7Z4V2 C14(Carbamidomethyl) CID 1.0000 0.0000 1 1 405 5.14 0.00 0 0 33 2 1039.51660 2078.02593 0.07 50.52 4781 4781 MS2 29/40 Linfeng_20130201_rIgG_4.raw High VINEPTAAALAYGLDK Unambiguous 3 1 B7Z4V2 CID 1.0000 0.0000 1 1 486 4.45 0.00 0 0 8 2 823.44312 1645.87895 -0.42 49.24 4623 4623 MS2 24/30 Linfeng_20130201_rIgG_4.raw High SQVFSTAADGQTQVEIK Unambiguous 3 1 B7Z4V2 CID 1.0000 0.0000 1 1 498 4.42 0.00 0 0 50 2 904.95557 1808.90386 0.72 37.23 2581 2581 MS2 23/32 Linfeng_20130204_CTCF_4.raw High GAVVGIDLGTTNScVAVmEGK Unambiguous 2 1 B7Z4V2 C14(Carbamidomethyl); M18(Oxidation) CID 1.0000 0.0000 1 1 357 4.34 0.00 0 0 50 2 1047.51282 2094.01836 -1.11 44.84 4111 4111 MS2 29/40 Linfeng_20130201_rIgG_4.raw High SQVFSTAADGQTQVEIK Unambiguous 3 1 B7Z4V2 CID 1.0000 0.0000 1 1 508 4.13 0.00 0 9 50 2 904.95569 1808.90410 0.85 38.18 2676 2676 MS2 24/32 Linfeng_20130204_CTCF_4.raw High SQVFSTAADGQTQVEIK Unambiguous 3 1 B7Z4V2 CID 1.0000 0.0000 1 1 490 3.76 0.00 0 29 50 2 904.95502 1808.90276 0.11 37.05 3291 3291 MS2 21/32 Linfeng_20130201_rIgG_4.raw High DAGQISGLNVLR Unambiguous 3 1 B7Z4V2 CID 1.0000 0.0000 1 1 513 3.66 0.00 0 5 15 2 621.84393 1242.68059 0.36 45.19 4147 4147 MS2 18/22 Linfeng_20130201_rIgG_4.raw High SQVFSTAADGQTQVEIK Unambiguous 3 1 B7Z4V2 CID 1.0000 0.0000 1 1 504 3.57 0.00 0 10 50 2 904.95599 1808.90471 1.19 38.06 3393 3393 MS2 22/32 Linfeng_20130201_rIgG_4.raw High DAGQISGLNVLR Unambiguous 3 1 B7Z4V2 CID 1.0000 0.0000 1 1 508 3.48 0.00 0 34 50 2 621.84406 1242.68083 0.56 45.34 3412 3412 MS2 19/22 Linfeng_20130204_CTCF_4.raw High VEAVNmAEGIIHDTETK Unambiguous 3 1 B7Z4V2 M6(Oxidation) CID 1.0000 0.0000 1 1 447 3.37 0.00 0 15 50 2 936.95526 1872.90325 1.27 41.23 3727 3727 MS2 17/32 Linfeng_20130201_rIgG_4.raw High EQQIVIQSSGGLSK Unambiguous 3 1 B7Z4V2 CID 1.0000 0.0000 1 1 390 3.36 0.00 0 0 50 2 737.40033 1473.79338 1.74 33.68 2230 2230 MS2 17/26 Linfeng_20130204_CTCF_4.raw High EQQIVIQSSGGLSK Unambiguous 3 1 B7Z4V2 CID 1.0000 0.0000 1 1 422 3.25 0.00 0 0 50 2 737.39899 1473.79070 -0.08 33.58 2943 2943 MS2 22/26 Linfeng_20130201_rIgG_4.raw High VEAVNmAEGIIHDTETK Unambiguous 3 1 B7Z4V2 M6(Oxidation) CID 1.0000 0.0000 1 1 501 3.25 0.00 0 11 9 3 624.97198 1872.90140 0.29 41.16 3719 3719 MS2 30/64 Linfeng_20130201_rIgG_4.raw High VIAVYDLGGGTFDISILEIQK Unambiguous 3 1 B7Z4V2 CID 1.0000 0.0000 1 1 229 3.13 0.00 0 0 50 2 1126.11365 2251.22002 -0.94 57.93 4807 4807 MS2 16/40 Linfeng_20130204_CTCF_4.raw High VQQTVQDLFGR Unambiguous 3 1 B7Z4V2 CID 1.0000 0.0000 1 1 606 3.11 0.00 0 31 50 2 645.84320 1290.67912 -0.78 44.02 4022 4022 MS2 17/20 Linfeng_20130201_rIgG_4.raw High TTPSVVAFTADGER Unambiguous 2 1 B7Z4V2 CID 1.0000 0.0000 1 1 514 3.09 0.00 0 14 50 2 725.86322 1450.71916 1.27 40.27 2892 2892 MS2 18/26 Linfeng_20130204_CTCF_4.raw High VEAVNmAEGIIHDTETK Unambiguous 3 1 B7Z4V2 M6(Oxidation) CID 1.0000 0.0000 1 1 478 3.05 0.00 0 9 50 3 624.97076 1872.89774 -1.67 41.37 3003 3003 MS2 24/64 Linfeng_20130204_CTCF_4.raw High VQQTVQDLFGR Unambiguous 3 1 B7Z4V2 CID 1.0000 0.0000 1 1 546 3.05 0.00 0 19 50 2 645.84412 1290.68096 0.64 44.32 3308 3308 MS2 16/20 Linfeng_20130204_CTCF_4.raw High VEAVNMAEGIIHDTETK Unambiguous 3 1 B7Z4V2 CID 1.0000 0.0000 1 1 534 3.01 0.00 0 30 50 3 619.64020 1856.90604 0.05 50.84 3995 3995 MS2 26/64 Linfeng_20130204_CTCF_4.raw High EQQIVIQSSGGLSKDDIENMVK Unambiguous 3 1 B7Z4V2 CID 1.0000 0.0000 1 1 541 2.99 0.00 1 0 50 3 806.74756 2418.22812 4.10 46.20 3500 3500 MS2 28/84 Linfeng_20130204_CTCF_4.raw High EQQIVIQSSGGLSKDDIENmVK Unambiguous 3 1 B7Z4V2 M20(Oxidation) CID 1.0000 0.0000 1 1 475 2.92 0.00 1 0 50 3 812.07642 2434.21469 0.65 38.57 3445 3445 MS2 24/84 Linfeng_20130201_rIgG_4.raw High NAVITVPAYFNDSQR Unambiguous 3 1 B7Z4V2 CID 1.0000 0.0000 1 1 423 2.92 0.00 0 7 10 2 847.92914 1694.85100 0.75 48.43 4522 4522 MS2 18/28 Linfeng_20130201_rIgG_4.raw High TTPSVVAFTADGER Unambiguous 2 1 B7Z4V2 CID 1.0000 0.0000 1 1 454 2.73 0.00 0 6 48 2 725.86255 1450.71782 0.34 40.02 3600 3600 MS2 22/26 Linfeng_20130201_rIgG_4.raw High NAVITVPAYFNDSQR Unambiguous 3 1 B7Z4V2 CID 1.0000 0.0000 1 1 420 2.67 0.00 0 3 10 2 847.93011 1694.85295 1.91 48.66 3758 3758 MS2 17/28 Linfeng_20130204_CTCF_4.raw High LFEmAYK Unambiguous 3 1 B7Z4V2 M4(Oxidation) CID 1.0000 0.0000 1 1 292 2.30 0.00 0 27 50 2 459.22626 917.44524 1.62 31.78 2043 2043 MS2 9/12 Linfeng_20130204_CTCF_4.raw High LFEMAYK Unambiguous 3 1 B7Z4V2 CID 1.0000 0.0000 1 1 283 2.20 0.00 0 10 50 2 451.22806 901.44884 0.00 40.48 2913 2913 MS2 11/12 Linfeng_20130204_CTCF_4.raw P81605-2 Isoform 2 of Dermcidin OS=Homo sapiens GN=DCD - [DCD_HUMAN] 24.79 2 4 4 18 0.00 55.61 24.79 4 18 121 12.4 7.97 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High LGKDAVEDLESVGK Unambiguous 2 1 P81605-2 CID 1.0000 0.0000 1 1 509 4.38 0.00 1 13 50 2 730.38733 1459.76738 2.35 40.57 2920 2920 MS2 20/26 Linfeng_20130204_CTCF_6.raw High LGKDAVEDLESVGKGGEER Unambiguous 1 1 P81605-2 CID 1.0000 0.0000 1 1 507 3.73 0.00 2 14 27 3 663.33691 1987.99619 1.50 39.00 2750 2750 MS2 28/72 Linfeng_20130204_CTCF_6.raw High LGKDAVEDLESVGK Unambiguous 2 1 P81605-2 CID 1.0000 0.0000 1 1 533 3.68 0.00 1 32 50 2 730.38568 1459.76409 0.09 40.30 3240 3240 MS2 18/26 Linfeng_20130204_CTCF_1.raw High LGKDAVEDLESVGK Unambiguous 2 1 P81605-2 CID 1.0000 0.0000 1 1 550 3.57 0.00 1 8 24 3 487.25980 1459.76484 0.61 41.63 3036 3036 MS2 20/52 Linfeng_20130204_CTCF_6.raw High LGKDAVEDLESVGK Unambiguous 2 1 P81605-2 CID 1.0000 0.0000 1 1 556 3.47 0.00 1 13 50 3 487.26004 1459.76557 1.11 40.72 2939 2939 MS2 21/52 Linfeng_20130204_CTCF_3.raw High LGKDAVEDLESVGK Unambiguous 2 1 P81605-2 CID 1.0000 0.0000 1 1 539 3.43 0.00 1 10 43 3 487.25876 1459.76172 -1.53 40.87 3178 3178 MS2 20/52 Linfeng_20130204_CTCF_9.raw High LGKDAVEDLESVGKGGEER Unambiguous 1 1 P81605-2 CID 1.0000 0.0000 1 1 519 3.32 0.00 2 10 35 4 497.75363 1987.99270 -0.26 38.92 2742 2742 MS2 31/108 Linfeng_20130204_CTCF_6.raw High LGKDAVEDLESVGK Unambiguous 2 1 P81605-2 CID 1.0000 0.0000 1 1 566 3.23 0.00 1 3 17 3 487.26031 1459.76639 1.67 40.53 2915 2915 MS2 23/52 Linfeng_20130204_CTCF_6.raw High DAVEDLESVGK Unambiguous 2 1 P81605-2 CID 1.0000 0.0000 1 1 363 3.18 0.00 0 5 50 2 581.28479 1161.56230 -0.98 40.12 3221 3221 MS2 17/20 Linfeng_20130204_CTCF_1.raw High DAVEDLESVGK Unambiguous 2 1 P81605-2 CID 1.0000 0.0000 1 1 385 3.17 0.00 0 6 7 2 581.28534 1161.56340 -0.03 40.60 2923 2923 MS2 17/20 Linfeng_20130204_CTCF_6.raw High LGKDAVEDLESVGK Unambiguous 2 1 P81605-2 CID 1.0000 0.0000 1 1 540 3.07 0.00 1 19 50 3 487.25858 1459.76117 -1.90 40.53 3217 3217 MS2 20/52 Linfeng_20130204_CTCF_2.raw High LGKDAVEDLESVGK Unambiguous 2 1 P81605-2 CID 1.0000 0.0000 1 1 557 2.96 0.00 1 32 50 3 487.25916 1459.76291 -0.71 41.08 3150 3150 MS2 21/52 Linfeng_20130204_CTCF_10.raw High DAVEDLESVGK Unambiguous 2 1 P81605-2 CID 1.0000 0.0000 1 1 429 2.53 0.00 0 24 50 2 581.28571 1161.56413 0.60 40.84 3148 3148 MS2 16/20 Linfeng_20130204_CTCF_7.raw High ENAGEDPGLAR Unambiguous 2 1 P81605-2 CID 1.0000 0.0000 1 1 247 2.48 0.00 0 9 50 2 564.76782 1128.52837 0.27 21.04 953 953 MS2 14/20 Linfeng_20130204_CTCF_6.raw Medium LGKDAVEDLESVGK Unambiguous 2 1 P81605-2 CID 1.0000 0.0000 1 1 557 2.48 0.00 1 26 50 3 487.25925 1459.76319 -0.52 40.82 2948 2948 MS2 18/52 Linfeng_20130204_CTCF_4.raw Medium LGKDAVEDLESVGK Unambiguous 2 1 P81605-2 CID 1.0000 0.0000 1 1 555 2.46 0.00 1 13 50 3 487.25916 1459.76291 -0.71 40.13 3222 3222 MS2 23/52 Linfeng_20130204_CTCF_1.raw Medium LGKDAVEDLESVGK Unambiguous 2 1 P81605-2 CID 1.0000 0.0000 1 1 555 2.27 0.00 1 38 50 3 487.26007 1459.76566 1.17 40.88 3152 3152 MS2 19/52 Linfeng_20130204_CTCF_7.raw High DAVEDLESVGK Unambiguous 2 1 P81605-2 CID 1.0000 0.0000 1 1 349 2.20 0.00 0 39 50 2 581.28503 1161.56279 -0.56 40.72 3236 3236 MS2 14/20 Linfeng_20130204_CTCF_2.raw P05109 Protein S100-A8 OS=Homo sapiens GN=S100A8 PE=1 SV=1 - [S10A8_HUMAN] 24.73 1 3 3 13 31.68 24.73 3 13 0.00 93 10.8 7.03 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High LLETEcPQYIR Unambiguous 1 1 P05109 C6(Carbamidomethyl) CID 1.0000 0.0000 1 1 509 2.77 0.00 0 3 50 2 711.35938 1421.71147 1.48 36.92 3311 3311 MS2 16/20 Linfeng_20130201_rIgG_1.raw High ALNSIIDVYHK Unambiguous 1 1 P05109 CID 1.0000 0.0000 1 1 560 2.53 0.00 0 8 50 3 424.90292 1272.69422 -0.38 41.73 3780 3780 MS2 15/40 Linfeng_20130201_rIgG_2.raw High ALNSIIDVYHK Unambiguous 1 1 P05109 CID 1.0000 0.0000 1 1 538 2.53 0.00 0 54 50 2 636.85126 1272.69524 0.42 41.63 3808 3808 MS2 15/20 Linfeng_20130201_rIgG_1.raw High ALNSIIDVYHK Unambiguous 1 1 P05109 CID 1.0000 0.0000 1 1 534 2.53 0.00 0 61 50 2 636.85089 1272.69451 -0.15 42.09 3831 3831 MS2 15/20 Linfeng_20130201_rIgG_10.raw High LLETEcPQYIR Unambiguous 1 1 P05109 C6(Carbamidomethyl) CID 1.0000 0.0000 1 1 504 2.48 0.00 0 23 50 2 711.35870 1421.71013 0.53 37.26 3328 3328 MS2 16/20 Linfeng_20130201_rIgG_3.raw Medium KLLETEcPQYIR Unambiguous 1 1 P05109 C7(Carbamidomethyl) CID 1.0000 0.0000 1 1 532 2.42 0.00 1 0 50 3 517.27356 1549.80613 1.15 33.85 3002 3002 MS2 22/44 Linfeng_20130201_rIgG_1.raw High LLETEcPQYIR Unambiguous 1 1 P05109 C6(Carbamidomethyl) CID 1.0000 0.0000 1 1 526 2.40 0.00 0 0 50 2 711.36194 1421.71660 5.08 37.28 3314 3314 MS2 16/20 Linfeng_20130201_rIgG_4.raw High LLETEcPQYIR Unambiguous 1 1 P05109 C6(Carbamidomethyl) CID 1.0000 0.0000 1 1 523 2.39 0.00 0 6 50 2 711.35889 1421.71050 0.79 37.10 3305 3305 MS2 17/20 Linfeng_20130201_rIgG_2.raw Medium ALNSIIDVYHK Unambiguous 1 1 P05109 CID 1.0000 0.0000 1 1 559 2.39 0.00 0 3 50 3 424.90280 1272.69385 -0.67 41.86 3804 3804 MS2 18/40 Linfeng_20130201_rIgG_3.raw High LLETEcPQYIR Unambiguous 1 1 P05109 C6(Carbamidomethyl) CID 1.0000 0.0000 1 1 566 2.36 0.00 0 20 50 2 711.36249 1421.71770 5.85 37.29 3332 3332 MS2 14/20 Linfeng_20130201_rIgG_10.raw High LLETEcPQYIR Unambiguous 1 1 P05109 C6(Carbamidomethyl) CID 1.0000 0.0000 1 1 554 2.32 0.00 0 35 50 2 711.36078 1421.71428 3.45 37.41 3354 3354 MS2 16/20 Linfeng_20130201_rIgG_9.raw High LLETEcPQYIR Unambiguous 1 1 P05109 C6(Carbamidomethyl) CID 1.0000 0.0000 1 1 594 2.29 0.00 0 22 50 2 711.36292 1421.71855 6.46 37.46 3320 3320 MS2 15/20 Linfeng_20130201_rIgG_8.raw Medium ALNSIIDVYHK Unambiguous 1 1 P05109 CID 1.0000 0.0000 1 1 538 2.28 0.00 0 7 50 3 424.90244 1272.69275 -1.53 42.21 3847 3847 MS2 14/40 Linfeng_20130201_rIgG_9.raw Q5QPL9 "RNA binding protein, autoantigenic (HnRNP-associated with lethal yellow homolog (Mouse)) (Fragment) OS=Homo sapiens GN=RALY PE=2 SV=1 - [Q5QPL9_HUMAN]" 22.36 4 4 4 4 10.64 22.36 4 4 237 24.7 10.49 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High VLAGQTLDINMAGEPKPDRPK Unambiguous 4 1 Q5QPL9 CID 1.0000 0.0000 1 1 356 2.97 0.00 2 30 50 3 750.73621 2250.19406 1.27 38.42 3489 3489 MS2 22/80 Linfeng_20130201_rIgG_6.raw High SNIDALLSR Unambiguous 3 1 Q5QPL9 CID 1.0000 0.0000 1 1 577 2.71 0.00 0 32 50 2 494.77426 988.54125 -1.00 41.33 3788 3788 MS2 14/16 Linfeng_20130201_rIgG_6.raw High VFIGNLNTALVK Unambiguous 4 1 Q5QPL9 CID 1.0000 0.0000 1 1 195 2.62 0.00 0 11 28 2 644.88477 1288.76225 -0.12 50.21 4789 4789 MS2 19/22 Linfeng_20130201_rIgG_6.raw High GYAFVQYSNER Unambiguous 4 1 Q5QPL9 CID 1.0000 0.0000 1 1 271 2.34 0.00 0 4 50 2 667.31274 1333.61821 0.78 37.60 3407 3407 MS2 14/20 Linfeng_20130201_rIgG_6.raw D6RAQ3 Prelamin-A/C OS=Homo sapiens GN=LMNA PE=3 SV=1 - [D6RAQ3_HUMAN] 22.30 9 8 8 16 18.00 15.40 5 6 30.42 22.30 8 10 565 62.8 6.18 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High IDSLSAQLSQLQK Unambiguous 9 1 D6RAQ3 CID 1.0000 0.0000 1 1 485 3.89 0.00 0 7 50 2 715.89465 1430.78203 -2.07 46.29 3509 3509 MS2 21/24 Linfeng_20130204_CTCF_4.raw High ASASGSGAQVGGPISSGSSASSVTVTR Unambiguous 4 1 D6RAQ3 CID 1.0000 0.0000 1 1 444 3.83 0.00 0 0 50 2 1183.08508 2365.16289 1.60 32.13 2078 2078 MS2 25/52 Linfeng_20130204_CTCF_4.raw High ASASGSGAQVGGPISSGSSASSVTVTR Unambiguous 4 1 D6RAQ3 CID 1.0000 0.0000 1 1 486 3.62 0.00 0 0 50 3 789.05774 2365.15866 -0.18 31.87 2776 2776 MS2 30/104 Linfeng_20130201_rIgG_4.raw High NSNLVGAAHEELQQSR Unambiguous 9 1 D6RAQ3 CID 1.0000 0.0000 1 1 456 3.57 0.00 0 0 50 2 876.93597 1752.86467 1.28 34.19 2279 2279 MS2 19/30 Linfeng_20130204_CTCF_4.raw High IDSLSAQLSQLQK Unambiguous 9 1 D6RAQ3 CID 1.0000 0.0000 1 1 460 3.54 0.00 0 7 40 2 715.89691 1430.78655 1.09 46.11 4250 4250 MS2 21/24 Linfeng_20130201_rIgG_4.raw High SVGGSGGGSFGDNLVTR Unambiguous 4 1 D6RAQ3 CID 1.0000 0.0000 1 1 348 3.40 0.00 0 0 50 2 783.88025 1566.75322 1.57 36.70 2527 2527 MS2 17/32 Linfeng_20130204_CTCF_4.raw High SVGGSGGGSFGDNLVTR Unambiguous 4 1 D6RAQ3 CID 1.0000 0.0000 1 1 338 3.39 0.00 0 0 50 2 783.87805 1566.74883 -1.23 36.40 3226 3226 MS2 22/32 Linfeng_20130201_rIgG_4.raw High TALINSTGEEVAMR Unambiguous 7 1 D6RAQ3 CID 1.0000 0.0000 1 1 493 3.38 0.00 0 7 50 2 746.37811 1491.74895 1.14 37.96 2654 2654 MS2 20/26 Linfeng_20130204_CTCF_4.raw High SNEDQSMGNWQIK Unambiguous 7 1 D6RAQ3 CID 1.0000 0.0000 1 1 139 2.77 0.00 0 46 50 2 768.84106 1536.67485 0.03 38.69 2728 2728 MS2 16/24 Linfeng_20130204_CTCF_4.raw High VAVEEVDEEGKFVR Unambiguous 7 1 D6RAQ3 CID 1.0000 0.0000 1 1 593 2.65 0.00 1 13 50 3 535.94373 1605.81662 2.90 34.91 2350 2350 MS2 20/52 Linfeng_20130204_CTCF_4.raw High NSNLVGAAHEELQQSR Unambiguous 9 1 D6RAQ3 CID 1.0000 0.0000 1 1 523 2.57 0.00 0 9 50 3 584.95990 1752.86515 1.55 33.75 2960 2960 MS2 22/60 Linfeng_20130201_rIgG_4.raw Medium LQTMKEELDFQK Unambiguous 9 1 D6RAQ3 CID 1.0000 0.0000 1 1 533 2.45 0.00 1 11 50 3 503.92590 1509.76316 0.88 37.49 2607 2607 MS2 18/44 Linfeng_20130204_CTCF_4.raw Medium ASASGSGAQVGGPISSGSSASSVTVTR Unambiguous 4 1 D6RAQ3 CID 1.0000 0.0000 1 1 525 2.44 0.00 0 0 50 3 789.06030 2365.16635 3.07 31.87 2788 2788 MS2 20/104 Linfeng_20130201_rIgG_2.raw High TALINSTGEEVAMR Unambiguous 7 1 D6RAQ3 CID 1.0000 0.0000 1 1 516 2.44 0.00 0 19 50 2 746.37854 1491.74980 1.71 37.72 3358 3358 MS2 20/26 Linfeng_20130201_rIgG_4.raw Medium NSNLVGAAHEELQQSR Unambiguous 9 1 D6RAQ3 CID 1.0000 0.0000 1 1 530 2.33 0.00 0 17 50 3 584.96136 1752.86954 4.06 33.93 2254 2254 MS2 17/60 Linfeng_20130204_CTCF_4.raw High ASASGSGAQVGGPISSGSSASSVTVTR Unambiguous 4 1 D6RAQ3 CID 1.0000 0.0000 1 1 476 2.15 0.00 0 59 50 2 1183.08826 2365.16924 4.29 32.31 2096 2096 MS2 16/52 Linfeng_20130204_CTCF_4.raw P14923 Junction plakoglobin OS=Homo sapiens GN=JUP PE=1 SV=3 - [PLAK_HUMAN] 22.01 5 12 12 39 76.08 12.21 6 22 57.94 15.70 9 17 745 81.7 6.14 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High NLSDVATKQEGLESVLK Unambiguous 1 1 P14923 CID 1.0000 0.0000 1 1 421 5.22 0.00 1 5 37 2 915.99567 1830.98406 1.77 44.50 3342 3342 MS2 24/32 Linfeng_20130204_CTCF_6.raw High SAIVHLINYQDDAELATR Unambiguous 6 1 P14923 CID 1.0000 0.0000 1 1 508 4.49 0.00 0 10 10 3 677.01697 2029.03635 0.68 46.16 4267 4267 MS2 30/68 Linfeng_20130201_rIgG_5.raw High SAIVHLINYQDDAELATR Unambiguous 6 1 P14923 CID 1.0000 0.0000 1 1 509 4.20 0.00 0 31 34 3 677.01691 2029.03617 0.59 46.35 4276 4276 MS2 27/68 Linfeng_20130201_rIgG_4.raw High SAIVHLINYQDDAELATR Unambiguous 6 1 P14923 CID 1.0000 0.0000 1 1 506 4.15 0.00 0 13 50 3 677.01758 2029.03818 1.58 46.08 4234 4234 MS2 26/68 Linfeng_20130201_rIgG_2.raw High LLNQPNQWPLVK Unambiguous 1 1 P14923 CID 1.0000 0.0000 1 1 278 4.06 0.00 0 0 42 2 725.41522 1449.82317 1.27 49.47 3866 3866 MS2 19/22 Linfeng_20130204_CTCF_6.raw High LLNDEDPVVVTK Unambiguous 6 1 P14923 CID 1.0000 0.0000 1 1 416 4.04 0.00 0 7 13 2 671.36768 1341.72807 1.48 36.74 2516 2516 MS2 18/22 Linfeng_20130204_CTCF_6.raw High ALmGSPQLVAAVVR Unambiguous 6 1 P14923 M3(Oxidation) CID 1.0000 0.0000 1 1 353 3.94 0.00 0 9 13 2 714.40601 1427.80474 0.52 46.05 4253 4253 MS2 21/26 Linfeng_20130201_rIgG_5.raw High NLALcPANHAPLQEAAVIPR Unambiguous 1 1 P14923 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 405 3.94 0.00 0 3 31 3 719.05359 2155.14621 0.95 45.03 4182 4182 MS2 31/76 Linfeng_20130201_rIgG_1.raw High SAIVHLINYQDDAELATR Unambiguous 6 1 P14923 CID 1.0000 0.0000 1 1 506 3.92 0.00 0 11 17 3 677.01733 2029.03745 1.22 46.27 4269 4269 MS2 28/68 Linfeng_20130201_rIgG_3.raw High SAIVHLINYQDDAELATR Unambiguous 6 1 P14923 CID 1.0000 0.0000 1 1 515 3.81 0.00 0 14 18 3 677.01715 2029.03690 0.95 45.89 4280 4280 MS2 29/68 Linfeng_20130201_rIgG_1.raw High LLNDEDPVVVTK Unambiguous 6 1 P14923 CID 1.0000 0.0000 1 1 422 3.69 0.00 0 28 50 2 671.36707 1341.72685 0.57 37.06 2787 2787 MS2 17/22 Linfeng_20130204_CTCF_9.raw High LLNDEDPVVVTK Unambiguous 6 1 P14923 CID 1.0000 0.0000 1 1 403 3.65 0.00 0 24 50 2 671.36884 1341.73039 3.21 36.39 3256 3256 MS2 18/22 Linfeng_20130201_rIgG_1.raw High ALmGSPQLVAAVVR Unambiguous 6 1 P14923 M3(Oxidation) CID 1.0000 0.0000 1 1 371 3.64 0.00 0 36 50 2 714.40564 1427.80400 0.01 46.24 4266 4266 MS2 21/26 Linfeng_20130201_rIgG_3.raw High LLNDEDPVVVTK Unambiguous 6 1 P14923 CID 1.0000 0.0000 1 1 409 3.61 0.00 0 42 50 2 671.36865 1341.73003 2.93 36.59 2815 2815 MS2 17/22 Linfeng_20130204_CTCF_2.raw High LLNDEDPVVVTK Unambiguous 6 1 P14923 CID 1.0000 0.0000 1 1 442 3.60 0.00 0 36 50 2 671.36682 1341.72637 0.20 36.51 2852 2852 MS2 17/22 Linfeng_20130204_CTCF_1.raw High SAIVHLINYQDDAELATR Unambiguous 6 1 P14923 CID 1.0000 0.0000 1 1 500 3.58 0.00 0 27 50 3 677.01654 2029.03507 0.05 46.42 3831 3831 MS2 24/68 Linfeng_20130204_CTCF_2.raw High ALmGSPQLVAAVVR Unambiguous 6 1 P14923 M3(Oxidation) CID 1.0000 0.0000 1 1 336 3.58 0.00 0 6 50 2 714.41010 1427.81291 6.25 46.36 3542 3542 MS2 22/26 Linfeng_20130204_CTCF_6.raw High LLNDEDPVVVTK Unambiguous 6 1 P14923 CID 1.0000 0.0000 1 1 506 3.52 0.00 0 20 50 2 671.36633 1341.72539 -0.52 36.73 3370 3370 MS2 17/22 Linfeng_20130201_rIgG_7.raw High LLNDEDPVVVTK Unambiguous 6 1 P14923 CID 1.0000 0.0000 1 1 437 3.52 0.00 0 33 50 2 671.36768 1341.72807 1.48 36.55 3258 3258 MS2 18/22 Linfeng_20130201_rIgG_10.raw High LLNDEDPVVVTK Unambiguous 6 1 P14923 CID 1.0000 0.0000 1 1 454 3.36 0.00 0 28 50 2 671.36841 1341.72954 2.57 36.56 3257 3257 MS2 17/22 Linfeng_20130201_rIgG_3.raw High LLNDEDPVVVTK Unambiguous 6 1 P14923 CID 1.0000 0.0000 1 1 439 3.35 0.00 0 20 50 2 671.36688 1341.72649 0.30 36.68 3282 3282 MS2 17/22 Linfeng_20130201_rIgG_9.raw High ALmGSPQLVAAVVR Unambiguous 6 1 P14923 M3(Oxidation) CID 1.0000 0.0000 1 1 367 3.29 0.00 0 25 50 2 714.40564 1427.80400 0.01 46.16 4242 4242 MS2 19/26 Linfeng_20130201_rIgG_2.raw High SAIVHLINYQDDAELATR Unambiguous 6 1 P14923 CID 1.0000 0.0000 1 1 508 3.28 0.00 0 10 18 3 677.01691 2029.03617 0.59 46.44 3550 3550 MS2 21/68 Linfeng_20130204_CTCF_6.raw High LLNDEDPVVVTK Unambiguous 6 1 P14923 CID 1.0000 0.0000 1 1 409 3.25 0.00 0 31 50 2 671.36725 1341.72722 0.84 37.20 2774 2774 MS2 14/22 Linfeng_20130204_CTCF_7.raw High LLNDEDPVVVTK Unambiguous 6 1 P14923 CID 1.0000 0.0000 1 1 407 3.23 0.00 0 22 50 2 671.36664 1341.72600 -0.07 37.27 2752 2752 MS2 16/22 Linfeng_20130204_CTCF_10.raw High LLNDEDPVVVTK Unambiguous 6 1 P14923 CID 1.0000 0.0000 1 1 457 3.17 0.00 0 17 50 2 671.36823 1341.72917 2.30 36.32 3227 3227 MS2 17/22 Linfeng_20130201_rIgG_2.raw High LLNDEDPVVVTK Unambiguous 6 1 P14923 CID 1.0000 0.0000 1 1 409 3.17 0.00 0 25 48 2 671.36963 1341.73198 4.39 36.65 3093 3093 MS2 17/22 Linfeng_20130201_rIgG_5.raw High RALmGSPQLVAAVVR Unambiguous 6 1 P14923 M4(Oxidation) CID 1.0000 0.0000 1 1 252 3.17 0.00 1 17 50 3 528.64075 1583.90769 1.63 41.21 2992 2992 MS2 23/56 Linfeng_20130204_CTCF_6.raw High ALMGSPQLVAAVVR Unambiguous 6 1 P14923 CID 1.0000 0.0000 1 1 264 3.16 0.00 0 9 50 2 706.40735 1411.80742 -1.17 52.35 4162 4162 MS2 21/26 Linfeng_20130204_CTCF_6.raw High ALmGSPQLVAAVVR Unambiguous 6 1 P14923 M3(Oxidation) CID 1.0000 0.0000 1 1 358 3.14 0.00 0 35 50 2 714.40625 1427.80522 0.87 46.33 4274 4274 MS2 20/26 Linfeng_20130201_rIgG_4.raw High LLNDEDPVVVTK Unambiguous 6 1 P14923 CID 1.0000 0.0000 1 1 413 3.09 0.00 0 14 50 2 671.36731 1341.72734 0.93 36.87 3333 3333 MS2 17/22 Linfeng_20130201_rIgG_6.raw High NLSDVATKQEGLESVLK Unambiguous 1 1 P14923 CID 1.0000 0.0000 1 1 483 3.02 0.00 1 6 16 3 610.99860 1830.98124 0.23 44.39 3330 3330 MS2 23/64 Linfeng_20130204_CTCF_6.raw High LLNDEDPVVVTK Unambiguous 6 1 P14923 CID 1.0000 0.0000 1 1 410 2.92 0.00 0 60 50 2 671.36987 1341.73247 4.75 36.49 3235 3235 MS2 16/22 Linfeng_20130201_rIgG_4.raw High VSVELTNSLFK Unambiguous 1 1 P14923 CID 1.0000 0.0000 1 1 348 2.84 0.00 0 34 34 2 618.84546 1236.68364 0.13 50.16 4814 4814 MS2 16/20 Linfeng_20130201_rIgG_1.raw High LNYGIPAIVK Unambiguous 1 1 P14923 CID 1.0000 0.0000 1 1 310 2.72 0.00 0 15 50 2 544.33051 1087.65373 2.47 47.80 3689 3689 MS2 14/18 Linfeng_20130204_CTCF_6.raw High ALmGSPQLVAAVVR Unambiguous 6 1 P14923 M3(Oxidation) CID 1.0000 0.0000 1 1 357 2.64 0.00 0 27 30 2 714.40558 1427.80388 -0.07 46.11 4306 4306 MS2 20/26 Linfeng_20130201_rIgG_1.raw High TTTYTQGVPPSQGDLEYQMSTTAR Unambiguous 6 1 P14923 CID 1.0000 0.0000 1 1 297 2.51 0.00 0 5 42 3 878.07928 2632.22330 1.40 41.12 2983 2983 MS2 18/92 Linfeng_20130204_CTCF_6.raw Medium AGDKDDITEPAVcALR Unambiguous 1 1 P14923 C13(Carbamidomethyl) CID 1.0000 0.0000 1 1 403 2.35 0.00 1 42 50 3 577.61737 1730.83756 -0.18 35.91 3208 3208 MS2 17/60 Linfeng_20130201_rIgG_1.raw High LAEPSQLLK Unambiguous 6 1 P14923 CID 1.0000 0.0000 1 1 202 2.22 0.00 0 19 50 2 499.79697 998.58666 -1.47 38.09 2964 2964 MS2 12/16 Linfeng_20130204_CTCF_2.raw Q59ES8 Heterogeneous nuclear ribonucleoprotein M (Fragment) OS=Homo sapiens GN=HNRNPM PE=2 SV=1 - [Q59ES8_HUMAN] 21.14 4 11 11 15 47.08 21.14 11 15 615 65.2 9.13 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High LGSTVFVANLDYK Unambiguous 3 1 Q59ES8 CID 1.0000 0.0000 1 1 315 4.37 0.00 0 21 50 2 713.88446 1426.76164 2.76 49.02 3796 3796 MS2 20/24 Linfeng_20130204_CTCF_4.raw High MGLAMGGGGGASFDR Unambiguous 4 1 Q59ES8 CID 1.0000 0.0000 1 1 191 3.67 0.00 0 7 50 2 692.31177 1383.61626 1.28 41.03 2969 2969 MS2 20/28 Linfeng_20130204_CTCF_4.raw High LKEVFSmAGVVVR Unambiguous 3 1 Q59ES8 M7(Oxidation) CID 1.0000 0.0000 1 1 336 3.58 0.00 1 20 50 3 484.27414 1450.80786 -0.60 38.78 2737 2737 MS2 23/48 Linfeng_20130204_CTCF_4.raw High MGPAmGPALGAGIER Unambiguous 4 1 Q59ES8 M5(Oxidation) CID 1.0000 0.0000 1 1 388 3.53 0.00 0 5 50 2 722.35931 1443.71135 2.05 36.82 2539 2539 MS2 20/28 Linfeng_20130204_CTCF_4.raw High DKFNEcGHVLYADIK Unambiguous 4 1 Q59ES8 C6(Carbamidomethyl) CID 1.0000 0.0000 1 1 423 3.40 0.00 1 5 43 3 603.62616 1808.86393 0.14 37.56 2614 2614 MS2 21/56 Linfeng_20130204_CTCF_4.raw High MGPLGLDHMASSIER Unambiguous 4 1 Q59ES8 CID 1.0000 0.0000 1 1 429 3.32 0.00 0 67 37 3 538.59900 1613.78244 3.05 46.16 3496 3496 MS2 23/56 Linfeng_20130204_CTCF_4.raw High FNEcGHVLYADIK Unambiguous 4 1 Q59ES8 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 478 3.25 0.00 0 34 50 2 783.37933 1565.75139 6.16 38.23 2681 2681 MS2 20/24 Linfeng_20130204_CTCF_4.raw High MGAGMGFGLER Unambiguous 4 1 Q59ES8 CID 1.0000 0.0000 1 1 258 3.24 0.00 0 42 50 2 563.26343 1125.51958 1.36 43.60 3233 3233 MS2 18/20 Linfeng_20130204_CTCF_4.raw High mGPLGLDHMASSIER Unambiguous 4 1 Q59ES8 M1(Oxidation) CID 1.0000 0.0000 1 1 366 3.11 0.00 0 2 29 3 543.92859 1629.77121 -0.75 42.60 3131 3131 MS2 22/56 Linfeng_20130204_CTCF_4.raw High INEILSNALK Unambiguous 3 1 Q59ES8 CID 1.0000 0.0000 1 1 446 2.74 0.00 0 12 50 2 557.82788 1114.64849 1.60 43.56 3229 3229 MS2 15/18 Linfeng_20130204_CTCF_4.raw High GNFGGSFAGSFGGAGGHAPGVAR Unambiguous 4 1 Q59ES8 CID 1.0000 0.0000 1 1 405 2.73 0.00 0 7 50 3 678.99091 2034.95816 2.53 42.10 3079 3079 MS2 23/88 Linfeng_20130204_CTCF_4.raw High EVFSmAGVVVR Unambiguous 3 1 Q59ES8 M5(Oxidation) CID 1.0000 0.0000 1 1 419 2.66 0.00 0 26 50 2 605.31897 1209.63066 0.80 37.77 2635 2635 MS2 17/20 Linfeng_20130204_CTCF_4.raw High mGPLGLDHmASSIER Unambiguous 4 1 Q59ES8 M1(Oxidation); M9(Oxidation) CID 1.0000 0.0000 1 1 332 2.54 0.00 0 18 50 3 549.26019 1645.76603 -0.81 33.22 2185 2185 MS2 21/56 Linfeng_20130204_CTCF_4.raw High MGPAMGPALGAGIER Unambiguous 4 1 Q59ES8 CID 1.0000 0.0000 1 1 375 2.51 0.00 0 4 50 2 714.36053 1427.71379 0.22 43.05 3177 3177 MS2 19/28 Linfeng_20130204_CTCF_4.raw Medium MGPLGLDHmASSIER Unambiguous 4 1 Q59ES8 M9(Oxidation) CID 1.0000 0.0000 1 1 373 2.42 0.00 0 7 50 3 543.92871 1629.77158 -0.53 37.01 2558 2558 MS2 25/56 Linfeng_20130204_CTCF_4.raw P11021 78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2 - [GRP78_HUMAN] 21.10 2 8 9 13 14.16 11.31 5 5 28.05 16.21 7 8 654 72.3 5.16 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High SQIFSTASDNQPTVTIK Unambiguous 1 1 P11021 CID 1.0000 0.0000 1 1 499 4.73 0.00 0 0 50 2 918.97192 1836.93657 1.48 41.05 2971 2971 MS2 23/32 Linfeng_20130204_CTCF_4.raw High IINEPTAAAIAYGLDK Unambiguous 10 2 P11021;P11142 CID 1.0000 0.0000 1 1 391 4.58 0.00 0 12 43 2 830.45068 1659.89409 -0.72 50.43 3951 3951 MS2 25/30 Linfeng_20130204_CTCF_4.raw High LYGSAGPPPTGEEDTAEKDEL Unambiguous 1 1 P11021 CID 1.0000 0.0000 1 1 243 4.54 0.00 1 0 50 2 1088.50220 2175.99712 1.93 37.97 2655 2655 MS2 20/40 Linfeng_20130204_CTCF_4.raw High NQLTSNPENTVFDAK Unambiguous 2 1 P11021 CID 1.0000 0.0000 1 1 356 3.81 0.00 0 0 50 2 839.40863 1677.80998 1.23 39.46 2807 2807 MS2 19/28 Linfeng_20130204_CTCF_4.raw High IINEPTAAAIAYGLDK Unambiguous 10 2 P11021;P11142 CID 1.0000 0.0000 1 1 410 3.16 0.00 0 6 35 2 830.45245 1659.89763 1.41 50.26 4750 4750 MS2 22/30 Linfeng_20130201_rIgG_4.raw High TWNDPSVQQDIK Unambiguous 2 1 P11021 CID 1.0000 0.0000 1 1 394 3.05 0.00 0 4 50 2 715.84998 1430.69267 1.11 34.99 2358 2358 MS2 18/22 Linfeng_20130204_CTCF_4.raw High TKPYIQVDIGGGQTK Unambiguous 2 1 P11021 CID 1.0000 0.0000 1 1 516 3.01 0.00 1 52 50 3 535.62549 1604.86191 -1.50 35.10 3095 3095 MS2 22/56 Linfeng_20130201_rIgG_4.raw High VTHAVVTVPAYFNDAQR Unambiguous 2 1 P11021 CID 1.0000 0.0000 1 1 533 2.90 0.00 0 36 50 3 629.99597 1887.97336 1.12 42.80 3891 3891 MS2 27/64 Linfeng_20130201_rIgG_4.raw High ITPSYVAFTPEGER Unambiguous 2 1 P11021 CID 1.0000 0.0000 1 1 483 2.59 0.00 0 29 50 2 783.89496 1566.78264 1.74 43.64 3980 3980 MS2 15/26 Linfeng_20130201_rIgG_4.raw High ITPSYVAFTPEGER Unambiguous 2 1 P11021 CID 1.0000 0.0000 1 1 493 2.58 0.00 0 16 50 2 783.89587 1566.78447 2.91 44.05 3294 3294 MS2 14/26 Linfeng_20130204_CTCF_6.raw High TWNDPSVQQDIK Unambiguous 2 1 P11021 CID 1.0000 0.0000 1 1 373 2.49 0.00 0 16 50 2 715.84888 1430.69048 -0.43 34.93 3078 3078 MS2 17/22 Linfeng_20130201_rIgG_4.raw High NELESYAYSLK Unambiguous 1 1 P11021 CID 1.0000 0.0000 1 1 385 2.41 0.00 0 53 50 2 658.82330 1316.63933 1.84 44.99 3376 3376 MS2 16/20 Linfeng_20130204_CTCF_4.raw High ITPSYVAFTPEGER Unambiguous 2 1 P11021 CID 1.0000 0.0000 1 1 479 2.35 0.00 0 0 50 2 783.89386 1566.78044 0.34 43.91 3265 3265 MS2 13/26 Linfeng_20130204_CTCF_4.raw E5RI99 60S ribosomal protein L30 (Fragment) OS=Homo sapiens GN=RPL30 PE=3 SV=1 - [E5RI99_HUMAN] 21.05 2 3 3 6 20.77 21.05 3 6 114 12.6 9.55 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High KSEIEYYAMLAK Unambiguous 2 1 E5RI99 CID 1.0000 0.0000 1 1 479 4.22 0.00 1 33 36 2 723.37299 1445.73870 2.88 44.96 3572 3572 MS2 20/22 Linfeng_20130204_CTCF_10.raw High KSEIEYYAMLAK Unambiguous 2 1 E5RI99 CID 1.0000 0.0000 1 1 485 3.55 0.00 1 16 27 3 482.58258 1445.73319 -0.93 44.92 3567 3567 MS2 23/44 Linfeng_20130204_CTCF_10.raw High KSEIEYYAmLAK Unambiguous 2 1 E5RI99 M9(Oxidation) CID 1.0000 0.0000 1 1 550 3.54 0.00 1 35 50 2 731.36810 1461.72893 -0.35 41.28 3172 3172 MS2 18/22 Linfeng_20130204_CTCF_10.raw High LVILANNcPALR Unambiguous 2 1 E5RI99 C8(Carbamidomethyl) CID 1.0000 0.0000 1 1 243 3.42 0.00 0 2 6 2 677.38715 1353.76702 -0.13 45.05 3581 3581 MS2 19/22 Linfeng_20130204_CTCF_10.raw High SEIEYYAmLAK Unambiguous 2 1 E5RI99 M8(Oxidation) CID 1.0000 0.0000 1 1 351 3.13 0.00 0 12 42 2 667.31934 1333.63140 -2.31 44.90 3564 3564 MS2 17/20 Linfeng_20130204_CTCF_10.raw High SEIEYYAMLAK Unambiguous 2 1 E5RI99 CID 1.0000 0.0000 1 1 386 2.92 0.00 0 11 50 2 659.32568 1317.64409 3.44 49.75 4095 4095 MS2 17/20 Linfeng_20130204_CTCF_10.raw P05090 Apolipoprotein D OS=Homo sapiens GN=APOD PE=1 SV=1 - [APOD_HUMAN] 20.63 2 3 3 5 14.06 20.63 3 5 189 21.3 5.15 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High NILTSNNIDVK Unambiguous 2 1 P05090 CID 1.0000 0.0000 1 1 492 3.08 0.00 0 45 50 2 615.83948 1230.67168 2.26 38.42 2688 2688 MS2 16/20 Linfeng_20130204_CTCF_6.raw High WYEIEKIPTTFENGR Unambiguous 2 1 P05090 CID 1.0000 0.0000 1 1 501 3.03 0.00 1 10 36 3 628.31610 1882.93375 0.15 49.55 3876 3876 MS2 23/56 Linfeng_20130204_CTCF_6.raw High NPNLPPETVDSLK Unambiguous 2 1 P05090 CID 1.0000 0.0000 1 1 435 2.69 0.00 0 31 40 2 712.37573 1423.74419 0.97 37.84 2627 2627 MS2 15/24 Linfeng_20130204_CTCF_6.raw High NILTSNNIDVK Unambiguous 2 1 P05090 CID 1.0000 0.0000 1 1 611 2.68 0.00 0 30 50 2 615.83844 1230.66960 0.58 38.63 2946 2946 MS2 16/20 Linfeng_20130204_CTCF_9.raw High NPNLPPETVDSLK Unambiguous 2 1 P05090 CID 1.0000 0.0000 1 1 405 2.58 0.00 0 32 36 2 712.37598 1423.74468 1.32 37.51 2594 2594 MS2 16/24 Linfeng_20130204_CTCF_6.raw P25311 Zinc-alpha-2-glycoprotein OS=Homo sapiens GN=AZGP1 PE=1 SV=2 - [ZA2G_HUMAN] 20.47 2 4 4 6 17.35 20.47 4 6 298 34.2 6.05 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High NILDRQDPPSVVVTSHQAPGEK Unambiguous 1 1 P25311 CID 1.0000 0.0000 1 1 438 4.60 0.00 1 16 50 3 796.41595 2387.23331 0.77 35.17 2358 2358 MS2 30/84 Linfeng_20130204_CTCF_6.raw High YYYDGKDYIEFNK Unambiguous 2 1 P25311 CID 1.0000 0.0000 1 1 212 2.75 0.00 1 16 13 3 573.26282 1717.77390 -0.32 40.80 2946 2946 MS2 19/48 Linfeng_20130204_CTCF_6.raw High QVEGMEDWKQDSQLQK Unambiguous 2 1 P25311 CID 1.0000 0.0000 1 1 330 2.62 0.00 1 8 21 3 650.30811 1948.90976 1.41 35.66 2407 2407 MS2 23/60 Linfeng_20130204_CTCF_6.raw High QVEGMEDWKQDSQLQK Unambiguous 2 1 P25311 CID 1.0000 0.0000 1 1 347 2.59 0.00 1 7 37 3 650.30695 1948.90628 -0.37 35.34 2375 2375 MS2 19/60 Linfeng_20130204_CTCF_6.raw High WEAEPVYVQR Unambiguous 2 1 P25311 CID 1.0000 0.0000 1 1 419 2.54 0.00 0 26 50 2 638.82013 1276.63298 0.68 37.53 2596 2596 MS2 15/18 Linfeng_20130204_CTCF_6.raw Medium QVEGmEDWKQDSQLQK Unambiguous 2 1 P25311 M5(Oxidation) CID 1.0000 0.0000 1 1 288 2.26 0.00 1 14 50 3 655.63971 1964.90458 1.35 29.38 1783 1783 MS2 17/60 Linfeng_20130204_CTCF_6.raw Q5TEC6 Histone H3 OS=Homo sapiens GN=HIST2H3PS2 PE=3 SV=1 - [Q5TEC6_HUMAN] 19.85 1 3 3 7 14.50 19.85 3 7 136 15.4 11.27 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High STELLIR Unambiguous 1 1 Q5TEC6 CID 1.0000 0.0000 1 1 461 2.17 0.00 0 5 50 2 416.25012 831.49297 -0.62 35.36 2614 2614 MS2 10/12 Linfeng_20130204_CTCF_9.raw High YRPGTVALR Unambiguous 1 1 Q5TEC6 CID 1.0000 0.0000 1 1 365 2.13 0.00 1 18 50 2 516.80090 1032.59453 -0.39 27.18 1761 1761 MS2 11/16 Linfeng_20130204_CTCF_9.raw High EIAQEFKTDLR Unambiguous 1 1 Q5TEC6 CID 1.0000 0.0000 1 1 479 2.09 0.00 1 14 45 2 675.35718 1349.70708 0.78 36.02 2625 2625 MS2 13/20 Linfeng_20130204_CTCF_10.raw High STELLIR Unambiguous 1 1 Q5TEC6 CID 1.0000 0.0000 1 1 454 2.03 0.00 0 5 50 2 416.25000 831.49272 -0.91 37.12 2793 2793 MS2 11/12 Linfeng_20130204_CTCF_9.raw High YRPGTVALR Unambiguous 1 1 Q5TEC6 CID 1.0000 0.0000 1 1 336 2.03 0.00 1 16 50 2 516.80078 1032.59429 -0.63 25.70 1594 1594 MS2 10/16 Linfeng_20130204_CTCF_9.raw High EIAQEFKTDLR Unambiguous 1 1 Q5TEC6 CID 1.0000 0.0000 1 1 517 2.02 0.00 1 4 48 2 675.35602 1349.70476 -0.93 35.48 2626 2626 MS2 14/20 Linfeng_20130204_CTCF_9.raw High YRPGTVALR Unambiguous 1 1 Q5TEC6 CID 1.0000 0.0000 1 1 378 2.01 0.00 1 15 50 2 516.80103 1032.59477 -0.15 26.57 1689 1689 MS2 11/16 Linfeng_20130204_CTCF_9.raw Q2QKE4 "Apoptosis-inducing factor 1, mitochondrial OS=Homo sapiens GN=PDCD8 PE=2 SV=1 - [Q2QKE4_HUMAN]" 19.54 5 3 3 3 10.93 19.54 3 3 261 28.4 5.67 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High KVETDHIVAAVGLEPNVELAK Unambiguous 5 1 Q2QKE4 CID 1.0000 0.0000 1 1 269 4.09 0.00 1 25 24 3 744.74615 2232.22391 0.17 44.61 4086 4086 MS2 31/80 Linfeng_20130201_rIgG_4.raw High TGGLEIDSDFGGFR Unambiguous 5 1 Q2QKE4 CID 1.0000 0.0000 1 1 256 3.86 0.00 0 17 50 2 735.84869 1470.69011 2.77 51.46 4889 4889 MS2 21/26 Linfeng_20130201_rIgG_4.raw High VMPNAIVQSVGVSSGK Unambiguous 5 1 Q2QKE4 CID 1.0000 0.0000 1 1 463 2.98 0.00 0 0 50 2 786.92517 1572.84307 1.00 42.90 3901 3901 MS2 21/30 Linfeng_20130201_rIgG_4.raw P07355 Annexin A2 OS=Homo sapiens GN=ANXA2 PE=1 SV=2 - [ANXA2_HUMAN] 19.17 13 6 6 6 18.79 19.17 6 6 339 38.6 7.75 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High RAEDGSVIDYELIDQDAR Unambiguous 11 1 P07355 CID 1.0000 0.0000 1 1 431 3.83 0.00 1 17 38 3 688.99994 2064.98526 0.93 45.19 3416 3416 MS2 32/68 Linfeng_20130204_CTCF_6.raw High TDLEKDIISDTSGDFRK Unambiguous 13 1 P07355 CID 1.0000 0.0000 1 1 488 3.69 0.00 2 15 19 3 647.32709 1939.96671 3.03 43.90 3277 3277 MS2 23/64 Linfeng_20130204_CTCF_6.raw High AYTNFDAERDALNIETAIK Unambiguous 7 1 P07355 CID 1.0000 0.0000 1 1 499 3.11 0.00 1 0 50 3 719.02618 2155.06400 -1.24 51.57 4085 4085 MS2 19/72 Linfeng_20130204_CTCF_6.raw High SLYYYIQQDTK Unambiguous 3 1 P07355 CID 1.0000 0.0000 1 1 443 2.90 0.00 0 17 43 2 711.35284 1421.69841 2.59 45.01 3397 3397 MS2 16/20 Linfeng_20130204_CTCF_6.raw High TDLEKDIISDTSGDFR Unambiguous 13 1 P07355 CID 1.0000 0.0000 1 1 386 2.75 0.00 1 20 50 3 604.62811 1811.86979 2.17 47.94 3706 3706 MS2 24/60 Linfeng_20130204_CTCF_6.raw High DALNIETAIK Unambiguous 7 1 P07355 CID 1.0000 0.0000 1 1 698 2.50 0.00 0 18 50 2 544.30432 1087.60137 1.79 43.34 3216 3216 MS2 14/18 Linfeng_20130204_CTCF_6.raw P01857 Ig gamma-1 chain C region OS=Homo sapiens GN=IGHG1 PE=1 SV=1 - [IGHG1_HUMAN] 18.79 1 5 5 23 27.86 13.03 4 12 25.00 15.15 4 11 330 36.1 8.19 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High TPEVTcVVVDVSHEDPEVK Unambiguous 1 1 P01857 C6(Carbamidomethyl) CID 1.0000 0.0000 1 1 417 3.27 0.00 0 5 33 3 713.68054 2139.02707 -0.21 45.43 3631 3631 MS2 21/72 Linfeng_20130204_CTCF_7.raw High FNWYVDGVEVHNAK Unambiguous 1 1 P01857 CID 1.0000 0.0000 1 1 420 2.76 0.00 0 9 14 3 559.94000 1677.80545 2.03 45.65 3464 3464 MS2 17/52 Linfeng_20130204_CTCF_6.raw High GPSVFPLAPSSK Unambiguous 1 1 P01857 CID 1.0000 0.0000 1 1 520 2.53 0.00 0 34 28 2 593.82672 1186.64617 -0.46 42.87 3897 3897 MS2 15/22 Linfeng_20130201_rIgG_2.raw High NQVSLTcLVK Unambiguous 1 1 P01857 C7(Carbamidomethyl) CID 1.0000 0.0000 1 1 526 2.51 0.00 0 19 50 2 581.31750 1161.62773 -1.66 42.57 3879 3879 MS2 14/18 Linfeng_20130201_rIgG_10.raw Medium FNWYVDGVEVHNAK Unambiguous 1 1 P01857 CID 1.0000 0.0000 1 1 428 2.49 0.00 0 33 50 3 559.93939 1677.80362 0.94 45.42 4272 4272 MS2 20/52 Linfeng_20130201_rIgG_7.raw High GPSVFPLAPSSK Unambiguous 1 1 P01857 CID 1.0000 0.0000 1 1 507 2.42 0.00 0 47 20 2 593.82721 1186.64714 0.36 42.83 3936 3936 MS2 14/22 Linfeng_20130201_rIgG_1.raw High GPSVFPLAPSSK Unambiguous 1 1 P01857 CID 1.0000 0.0000 1 1 524 2.40 0.00 0 39 50 2 593.82672 1186.64617 -0.46 43.01 3925 3925 MS2 15/22 Linfeng_20130201_rIgG_10.raw Medium FNWYVDGVEVHNAK Unambiguous 1 1 P01857 CID 1.0000 0.0000 1 1 428 2.38 0.00 0 34 48 3 559.93927 1677.80326 0.72 45.47 4224 4224 MS2 20/52 Linfeng_20130201_rIgG_6.raw High NQVSLTcLVK Unambiguous 1 1 P01857 C7(Carbamidomethyl) CID 1.0000 0.0000 1 1 572 2.36 0.00 0 32 50 2 581.31915 1161.63103 1.17 43.18 3390 3390 MS2 13/18 Linfeng_20130204_CTCF_7.raw High GPSVFPLAPSSK Unambiguous 1 1 P01857 CID 1.0000 0.0000 1 1 514 2.30 0.00 0 35 50 2 593.82709 1186.64690 0.16 43.01 3929 3929 MS2 14/22 Linfeng_20130201_rIgG_9.raw Medium FNWYVDGVEVHNAK Unambiguous 1 1 P01857 CID 1.0000 0.0000 1 1 403 2.28 0.00 0 20 50 3 559.93872 1677.80161 -0.26 45.23 4143 4143 MS2 20/52 Linfeng_20130201_rIgG_2.raw High GPSVFPLAPSSK Unambiguous 1 1 P01857 CID 1.0000 0.0000 1 1 519 2.28 0.00 0 58 50 2 593.82709 1186.64690 0.16 43.11 4026 4026 MS2 14/22 Linfeng_20130201_rIgG_7.raw High DTLmISR Unambiguous 1 1 P01857 M4(Oxidation) CID 1.0000 0.0000 1 1 417 2.22 0.00 0 36 50 2 426.21802 851.42876 -0.49 27.08 1749 1749 MS2 11/12 Linfeng_20130204_CTCF_9.raw High DTLmISR Unambiguous 1 1 P01857 M4(Oxidation) CID 1.0000 0.0000 1 1 285 2.16 0.00 0 29 50 2 426.21762 851.42797 -1.42 28.24 1874 1874 MS2 11/12 Linfeng_20130204_CTCF_8.raw High GPSVFPLAPSSK Unambiguous 1 1 P01857 CID 1.0000 0.0000 1 1 514 2.13 0.00 0 44 33 2 593.82709 1186.64690 0.16 42.96 3916 3916 MS2 14/22 Linfeng_20130201_rIgG_3.raw High DTLMISR Unambiguous 1 1 P01857 CID 1.0000 0.0000 1 1 545 2.08 0.00 0 18 50 2 418.22073 835.43419 -0.08 31.47 2013 2013 MS2 11/12 Linfeng_20130204_CTCF_3.raw High NQVSLTcLVK Unambiguous 1 1 P01857 C7(Carbamidomethyl) CID 1.0000 0.0000 1 1 557 2.08 0.00 0 22 50 2 581.31915 1161.63103 1.17 43.19 3377 3377 MS2 14/18 Linfeng_20130204_CTCF_10.raw High GPSVFPLAPSSK Unambiguous 1 1 P01857 CID 1.0000 0.0000 1 1 477 2.07 0.00 0 51 34 2 593.82678 1186.64629 -0.36 43.39 4001 4001 MS2 14/22 Linfeng_20130201_rIgG_6.raw High DTLMISR Unambiguous 1 1 P01857 CID 1.0000 0.0000 1 1 400 2.07 0.00 0 2 50 2 418.22034 835.43340 -1.03 31.23 2515 2515 MS2 11/12 Linfeng_20130201_rIgG_5.raw High DTLmISR Unambiguous 1 1 P01857 M4(Oxidation) CID 1.0000 0.0000 1 1 420 2.05 0.00 0 18 50 2 426.21796 851.42864 -0.63 28.89 1960 1960 MS2 9/12 Linfeng_20130204_CTCF_7.raw High DTLMISR Unambiguous 1 1 P01857 CID 1.0000 0.0000 1 1 547 2.01 0.00 0 4 50 2 418.22083 835.43437 0.13 33.59 2419 2419 MS2 10/12 Linfeng_20130204_CTCF_7.raw High DTLMISR Unambiguous 1 1 P01857 CID 1.0000 0.0000 1 1 518 2.01 0.00 0 3 50 2 418.22079 835.43431 0.06 31.52 2218 2218 MS2 10/12 Linfeng_20130204_CTCF_7.raw High DTLMISR Unambiguous 1 1 P01857 CID 1.0000 0.0000 1 1 418 2.00 0.00 0 8 50 2 418.22049 835.43370 -0.67 33.10 2347 2347 MS2 10/12 Linfeng_20130204_CTCF_8.raw E7ETL9 Probable ATP-dependent RNA helicase DDX5 OS=Homo sapiens GN=DDX5 PE=3 SV=1 - [E7ETL9_HUMAN] 18.01 2 4 8 10 0.00 29.18 18.01 8 10 544 61.6 8.92 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High ELAQQVQQVAAEYcR Unambiguous 2 1 E7ETL9 C14(Carbamidomethyl) CID 1.0000 0.0000 1 1 406 3.58 0.00 0 26 50 2 896.93732 1792.86736 1.47 47.46 3632 3632 MS2 18/28 Linfeng_20130204_CTCF_4.raw High APILIATDVASR Unambiguous 9 2 Q92841-1;E7ETL9 CID 1.0000 0.0000 1 1 153 3.35 0.00 0 22 23 2 613.85809 1226.70891 -1.20 42.59 3130 3130 MS2 18/22 Linfeng_20130204_CTCF_4.raw High MLDMGFEPQIR Unambiguous 9 2 Q92841-1;E7ETL9 CID 1.0000 0.0000 1 1 412 3.14 0.00 0 37 50 2 668.82611 1336.64495 4.53 50.97 4008 4008 MS2 16/20 Linfeng_20130204_CTCF_4.raw High TTYLVLDEADR Unambiguous 2 1 E7ETL9 CID 1.0000 0.0000 1 1 443 3.10 0.00 0 23 50 2 648.32935 1295.65141 2.77 42.92 3163 3163 MS2 17/20 Linfeng_20130204_CTCF_4.raw High GDGPIcLVLAPTR Unambiguous 9 2 Q92841-1;E7ETL9 C6(Carbamidomethyl) CID 1.0000 0.0000 1 1 369 3.08 0.00 0 23 50 2 684.87378 1368.74028 7.16 51.35 4047 4047 MS2 15/24 Linfeng_20130204_CTCF_4.raw High FVINYDYPNSSEDYIHR Unambiguous 2 1 E7ETL9 CID 1.0000 0.0000 1 1 243 3.07 0.00 0 7 50 3 711.32849 2131.97092 -0.51 45.64 3442 3442 MS2 22/64 Linfeng_20130204_CTCF_4.raw High MLDmGFEPQIR Unambiguous 9 2 Q92841-1;E7ETL9 M4(Oxidation) CID 1.0000 0.0000 1 1 337 2.70 0.00 0 9 50 2 676.82153 1352.63579 1.47 43.39 3211 3211 MS2 16/20 Linfeng_20130204_CTCF_4.raw High GVEIcIATPGR Unambiguous 9 2 Q92841-1;E7ETL9 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 412 2.43 0.00 0 26 50 2 586.81073 1172.61418 4.18 39.27 2787 2787 MS2 17/20 Linfeng_20130204_CTCF_4.raw High mLDmGFEPQIR Unambiguous 9 2 Q92841-1;E7ETL9 M1(Oxidation); M4(Oxidation) CID 1.0000 0.0000 1 1 267 2.40 0.00 0 20 50 2 684.81824 1368.62920 0.35 39.98 2862 2862 MS2 14/20 Linfeng_20130204_CTCF_4.raw High LLQLVEDR Unambiguous 2 1 E7ETL9 CID 1.0000 0.0000 1 1 320 2.33 0.00 0 24 50 2 493.28714 985.56700 -0.73 39.85 2849 2849 MS2 13/14 Linfeng_20130204_CTCF_4.raw P50402 Emerin OS=Homo sapiens GN=EMD PE=1 SV=1 - [EMD_HUMAN] 17.72 1 3 3 3 9.76 17.72 3 3 254 29.0 5.50 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High GYNDDYYEESYFTTR Unambiguous 1 1 P50402 CID 1.0000 0.0000 1 1 21 3.83 0.00 0 29 36 2 961.89063 1922.77397 1.26 45.62 3651 3651 MS2 20/28 Linfeng_20130204_CTCF_7.raw High DSAYQSITHYRPVSASR Unambiguous 1 1 P50402 CID 1.0000 0.0000 1 1 476 3.15 0.00 1 7 50 3 646.65375 1937.94669 0.12 35.33 2591 2591 MS2 21/64 Linfeng_20130204_CTCF_7.raw High YNIPHGPVVGSTR Unambiguous 1 1 P50402 CID 1.0000 0.0000 1 1 472 2.78 0.00 0 5 50 3 466.24942 1396.73371 0.35 33.05 2366 2366 MS2 21/48 Linfeng_20130204_CTCF_7.raw H7BY16 Nucleolin (Fragment) OS=Homo sapiens GN=NCL PE=4 SV=1 - [H7BY16_HUMAN] 16.16 4 4 4 4 10.50 16.16 4 4 297 32.4 5.36 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High GLSEDTTEETLKESFDGSVR Unambiguous 4 1 H7BY16 CID 1.0000 0.0000 1 1 325 3.61 0.00 1 11 50 3 734.01337 2200.02555 0.12 45.46 3426 3426 MS2 26/76 Linfeng_20130204_CTCF_3.raw High EVFEDAAEIR Unambiguous 3 1 H7BY16 CID 1.0000 0.0000 1 1 421 2.55 0.00 0 30 50 2 589.78796 1178.56865 -0.18 37.50 2612 2612 MS2 15/18 Linfeng_20130204_CTCF_3.raw High GIAYIEFK Unambiguous 4 1 H7BY16 CID 1.0000 0.0000 1 1 276 2.27 0.00 0 0 50 2 470.76035 940.51341 -0.50 45.94 3475 3475 MS2 12/14 Linfeng_20130204_CTCF_3.raw High SISLYYTGEK Unambiguous 4 1 H7BY16 CID 1.0000 0.0000 1 1 576 2.07 0.00 0 50 50 2 580.79541 1160.58354 0.12 38.32 2694 2694 MS2 13/18 Linfeng_20130204_CTCF_3.raw P05089 Arginase-1 OS=Homo sapiens GN=ARG1 PE=1 SV=2 - [ARGI1_HUMAN] 15.84 3 4 4 4 10.07 15.84 4 4 322 34.7 7.21 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High ISLVLGGDHSLAIGSISGHAR Unambiguous 3 1 P05089 CID 1.0000 0.0000 1 1 280 3.02 0.00 0 12 50 4 515.78729 2060.12734 1.23 48.21 3734 3734 MS2 35/120 Linfeng_20130204_CTCF_6.raw High DIVYIGLR Unambiguous 3 1 P05089 CID 1.0000 0.0000 1 1 329 2.50 0.00 0 5 50 2 474.78021 948.55315 1.92 47.80 3690 3690 MS2 13/14 Linfeng_20130204_CTCF_6.raw High TIGIIGAPFSK Unambiguous 3 1 P05089 CID 1.0000 0.0000 1 1 348 2.45 0.00 0 2 24 2 552.32434 1103.64141 -4.15 49.38 3855 3855 MS2 15/20 Linfeng_20130204_CTCF_6.raw High EGLYITEEIYK Unambiguous 2 1 P05089 CID 1.0000 0.0000 1 1 471 2.10 0.00 0 15 26 2 679.34906 1357.69084 1.64 49.42 3861 3861 MS2 14/20 Linfeng_20130204_CTCF_6.raw Q02413 Desmoglein-1 OS=Homo sapiens GN=DSG1 PE=1 SV=2 - [DSG1_HUMAN] 15.63 1 12 12 58 99.03 10.10 8 31 87.71 15.63 12 27 1049 113.7 5.03 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High TmNNFLDREQYGQYALAVR Unambiguous 1 1 Q02413 M2(Oxidation) CID 1.0000 0.0000 1 1 358 4.62 0.00 1 11 6 3 769.03595 2305.09330 -4.24 45.94 4240 4240 MS2 31/72 Linfeng_20130201_rIgG_5.raw High IIRQEPSDSPmFIINR Unambiguous 1 1 Q02413 M11(Oxidation) CID 1.0000 0.0000 1 1 502 4.48 0.00 1 13 11 3 644.67096 1931.99833 -1.31 38.82 3351 3351 MS2 27/60 Linfeng_20130201_rIgG_5.raw High TmNNFLDREQYGQYALAVR Unambiguous 1 1 Q02413 M2(Oxidation) CID 1.0000 0.0000 1 1 393 4.44 0.00 1 23 43 3 769.04022 2305.10611 1.32 46.12 4253 4253 MS2 26/72 Linfeng_20130201_rIgG_3.raw High IIRQEPSDSPmFIINR Unambiguous 1 1 Q02413 M11(Oxidation) CID 1.0000 0.0000 1 1 545 4.36 0.00 1 14 50 3 644.67175 1932.00071 -0.08 38.71 3470 3470 MS2 30/60 Linfeng_20130201_rIgG_2.raw High IIRQEPSDSPmFIINR Unambiguous 1 1 Q02413 M11(Oxidation) CID 1.0000 0.0000 1 1 538 4.31 0.00 1 8 42 3 644.67297 1932.00437 1.82 39.03 2753 2753 MS2 24/60 Linfeng_20130204_CTCF_6.raw High YQGTILSIDDNLQR Unambiguous 1 1 Q02413 CID 1.0000 0.0000 1 1 499 4.26 0.00 0 7 46 2 818.42145 1635.83562 1.15 47.66 3675 3675 MS2 20/26 Linfeng_20130204_CTCF_6.raw High YVMGNNPADLLAVDSR Unambiguous 1 1 Q02413 CID 1.0000 0.0000 1 1 431 4.25 0.00 0 0 50 2 867.93225 1734.85723 5.30 51.47 4075 4075 MS2 23/30 Linfeng_20130204_CTCF_6.raw High TmNNFLDREQYGQYALAVR Unambiguous 1 1 Q02413 M2(Oxidation) CID 1.0000 0.0000 1 1 373 4.20 0.00 1 20 27 3 769.03943 2305.10373 0.28 45.97 4221 4221 MS2 28/72 Linfeng_20130201_rIgG_2.raw High YVmGNNPADLLAVDSR Unambiguous 1 1 Q02413 M3(Oxidation) CID 1.0000 0.0000 1 1 408 4.13 0.00 0 0 38 2 875.92627 1750.84526 1.32 46.52 4297 4297 MS2 26/30 Linfeng_20130201_rIgG_3.raw High TmNNFLDREQYGQYALAVR Unambiguous 1 1 Q02413 M2(Oxidation) CID 1.0000 0.0000 1 1 370 4.13 0.00 1 35 29 3 769.03839 2305.10062 -1.07 46.26 3532 3532 MS2 29/72 Linfeng_20130204_CTCF_6.raw High IIRQEPSDSPmFIINR Unambiguous 1 1 Q02413 M11(Oxidation) CID 1.0000 0.0000 1 1 509 4.09 0.00 1 19 16 3 644.67078 1931.99778 -1.59 39.02 3376 3376 MS2 24/60 Linfeng_20130201_rIgG_5.raw High IIRQEPSDSPmFIINR Unambiguous 1 1 Q02413 M11(Oxidation) CID 1.0000 0.0000 1 1 517 4.09 0.00 1 12 50 3 644.67035 1931.99649 -2.26 38.96 3502 3502 MS2 27/60 Linfeng_20130201_rIgG_3.raw High TMNNFLDREQYGQYALAVR Unambiguous 1 1 Q02413 CID 1.0000 0.0000 1 1 447 4.00 0.00 1 1 6 3 763.70984 2289.11496 2.97 49.12 3825 3825 MS2 29/72 Linfeng_20130204_CTCF_6.raw High YVmGNNPADLLAVDSR Unambiguous 1 1 Q02413 M3(Oxidation) CID 1.0000 0.0000 1 1 363 3.94 0.00 0 8 50 2 875.92517 1750.84307 0.07 46.47 3553 3553 MS2 24/30 Linfeng_20130204_CTCF_6.raw High IIRQEPSDSPmFIINR Unambiguous 1 1 Q02413 M11(Oxidation) CID 1.0000 0.0000 1 1 506 3.88 0.00 1 6 50 3 644.67078 1931.99778 -1.59 39.03 3061 3061 MS2 22/60 Linfeng_20130204_CTCF_2.raw High TmNNFLDREQYGQYALAVR Unambiguous 1 1 Q02413 M2(Oxidation) CID 1.0000 0.0000 1 1 385 3.88 0.00 1 20 50 3 769.04065 2305.10739 1.87 46.18 3807 3807 MS2 26/72 Linfeng_20130204_CTCF_2.raw High IIRQEPSDSPmFIINR Unambiguous 1 1 Q02413 M11(Oxidation) CID 1.0000 0.0000 1 1 503 3.83 0.00 1 10 50 3 644.67096 1931.99833 -1.31 39.03 3512 3512 MS2 25/60 Linfeng_20130201_rIgG_10.raw High TYVVTGNmGSNDKVGDFVATDLDTGRPSTTVR Unambiguous 1 1 Q02413 M8(Oxidation) CID 1.0000 0.0000 1 1 358 3.78 0.00 2 0 50 3 1130.55115 3389.63889 3.23 43.11 3192 3192 MS2 22/124 Linfeng_20130204_CTCF_6.raw High YVmGNNPADLLAVDSR Unambiguous 1 1 Q02413 M3(Oxidation) CID 1.0000 0.0000 1 1 416 3.68 0.00 0 0 37 2 875.92529 1750.84331 0.21 46.29 4328 4328 MS2 26/30 Linfeng_20130201_rIgG_1.raw High YVmGNNPADLLAVDSR Unambiguous 1 1 Q02413 M3(Oxidation) CID 1.0000 0.0000 1 1 411 3.67 0.00 0 10 15 2 875.92566 1750.84404 0.63 46.36 4292 4292 MS2 26/30 Linfeng_20130201_rIgG_5.raw High IIRQEPSDSPmFIINR Unambiguous 1 1 Q02413 M11(Oxidation) CID 1.0000 0.0000 1 1 515 3.64 0.00 1 18 50 3 644.67255 1932.00309 1.15 39.15 3522 3522 MS2 23/60 Linfeng_20130201_rIgG_3.raw High YVmGNNPADLLAVDSR Unambiguous 1 1 Q02413 M3(Oxidation) CID 1.0000 0.0000 1 1 423 3.63 0.00 0 0 50 2 875.92468 1750.84209 -0.49 46.38 4266 4266 MS2 26/30 Linfeng_20130201_rIgG_2.raw High YVmGNNPADLLAVDSR Unambiguous 1 1 Q02413 M3(Oxidation) CID 1.0000 0.0000 1 1 427 3.48 0.00 0 10 50 2 875.92566 1750.84404 0.63 46.53 3843 3843 MS2 26/30 Linfeng_20130204_CTCF_2.raw High IIRQEPSDSPmFIINR Unambiguous 1 1 Q02413 M11(Oxidation) CID 1.0000 0.0000 1 1 528 3.45 0.00 1 13 50 3 644.67145 1931.99979 -0.55 39.20 3537 3537 MS2 25/60 Linfeng_20130201_rIgG_9.raw High QEPSDSPmFIINR Unambiguous 1 1 Q02413 M8(Oxidation) CID 1.0000 0.0000 1 1 391 3.40 0.00 0 4 50 2 775.36938 1549.73149 -0.07 39.94 3202 3202 MS2 15/24 Linfeng_20130204_CTCF_1.raw High IIRQEPSDSPMFIINR Unambiguous 1 1 Q02413 CID 1.0000 0.0000 1 1 488 3.35 0.00 1 33 9 3 639.34167 1916.01047 2.36 45.63 3462 3462 MS2 21/60 Linfeng_20130204_CTCF_6.raw High IIRQEPSDSPmFIINR Unambiguous 1 1 Q02413 M11(Oxidation) CID 1.0000 0.0000 1 1 534 3.14 0.00 1 7 50 3 644.67273 1932.00364 1.44 39.33 3528 3528 MS2 19/60 Linfeng_20130201_rIgG_4.raw High TYVVTGNMGSNDKVGDFVATDLDTGRPSTTVR Unambiguous 1 1 Q02413 CID 1.0000 0.0000 1 1 372 3.11 0.00 2 0 50 3 1125.22034 3373.64646 3.98 45.98 3502 3502 MS2 23/124 Linfeng_20130204_CTCF_6.raw High QEPSDSPmFIINR Unambiguous 1 1 Q02413 M8(Oxidation) CID 1.0000 0.0000 1 1 387 3.09 0.00 0 24 50 2 775.37128 1549.73528 2.38 40.05 2865 2865 MS2 15/24 Linfeng_20130204_CTCF_6.raw High VVGPISGADLHGmLEmPDLR Unambiguous 1 1 Q02413 M13(Oxidation); M16(Oxidation) CID 1.0000 0.0000 1 1 502 3.03 0.00 0 11 46 3 713.69159 2139.06021 1.31 44.12 3302 3302 MS2 23/76 Linfeng_20130204_CTCF_6.raw High QEPSDSPMFIINR Unambiguous 1 1 Q02413 CID 1.0000 0.0000 1 1 362 3.00 0.00 0 10 26 2 767.37177 1533.73625 -0.28 48.05 3717 3717 MS2 15/24 Linfeng_20130204_CTCF_6.raw High VVKPLDYEAMQSLQLSIGVR Unambiguous 1 1 Q02413 CID 1.0000 0.0000 1 1 321 2.96 0.00 1 30 50 3 749.41132 2246.21939 -0.90 58.13 4868 4868 MS2 23/76 Linfeng_20130204_CTCF_6.raw High QEPSDSPmFIINR Unambiguous 1 1 Q02413 M8(Oxidation) CID 1.0000 0.0000 1 1 369 2.96 0.00 0 13 50 2 775.36938 1549.73149 -0.07 40.15 3635 3635 MS2 15/24 Linfeng_20130201_rIgG_9.raw High MTGFELTEGVK Unambiguous 1 1 Q02413 CID 1.0000 0.0000 1 1 368 2.91 0.00 0 30 27 2 606.30408 1211.60088 2.61 44.20 3310 3310 MS2 16/20 Linfeng_20130204_CTCF_6.raw High QEPSDSPmFIINR Unambiguous 1 1 Q02413 M8(Oxidation) CID 1.0000 0.0000 1 1 407 2.82 0.00 0 13 37 2 775.37244 1549.73760 3.87 39.88 3479 3479 MS2 16/24 Linfeng_20130201_rIgG_5.raw High ALNSmGQDLERPLELR Unambiguous 1 1 Q02413 M5(Oxidation) CID 1.0000 0.0000 1 1 487 2.81 0.00 1 3 30 3 619.99176 1857.96073 6.41 40.31 2892 2892 MS2 19/60 Linfeng_20130204_CTCF_6.raw High ALNSMGQDLERPLELR Unambiguous 1 1 Q02413 CID 1.0000 0.0000 1 1 468 2.80 0.00 1 0 8 3 614.65656 1841.95511 0.65 47.20 3627 3627 MS2 21/60 Linfeng_20130204_CTCF_6.raw High QEPSDSPmFIINR Unambiguous 1 1 Q02413 M8(Oxidation) CID 1.0000 0.0000 1 1 312 2.78 0.00 0 0 50 2 775.36713 1549.72698 -2.98 40.03 3614 3614 MS2 16/24 Linfeng_20130201_rIgG_3.raw High ALNSmGQDLERPLELR Unambiguous 1 1 Q02413 M5(Oxidation) CID 1.0000 0.0000 1 1 508 2.74 0.00 1 22 50 3 619.98932 1857.95340 2.46 39.96 3597 3597 MS2 20/60 Linfeng_20130201_rIgG_2.raw Medium TYVVTGNmGSNDKVGDFVATDLDTGRPSTTVR Unambiguous 1 1 Q02413 M8(Oxidation) CID 1.0000 0.0000 1 1 336 2.67 0.00 2 0 8 4 848.16437 3389.63564 2.27 43.07 3187 3187 MS2 33/186 Linfeng_20130204_CTCF_6.raw High ALNSmGQDLERPLELR Unambiguous 1 1 Q02413 M5(Oxidation) CID 1.0000 0.0000 1 1 466 2.67 0.00 1 0 50 2 929.47766 1857.94805 -0.42 40.47 2909 2909 MS2 12/30 Linfeng_20130204_CTCF_6.raw High QEPSDSPmFIINR Unambiguous 1 1 Q02413 M8(Oxidation) CID 1.0000 0.0000 1 1 390 2.50 0.00 0 18 50 2 775.36975 1549.73223 0.41 40.27 3626 3626 MS2 15/24 Linfeng_20130201_rIgG_4.raw High QEPSDSPmFIINR Unambiguous 1 1 Q02413 M8(Oxidation) CID 1.0000 0.0000 1 1 358 2.48 0.00 0 21 50 2 775.36951 1549.73174 0.09 40.25 3678 3678 MS2 14/24 Linfeng_20130201_rIgG_6.raw Medium VVGPISGADLHGmLEmPDLR Unambiguous 1 1 Q02413 M13(Oxidation); M16(Oxidation) CID 1.0000 0.0000 1 1 506 2.46 0.00 0 13 50 3 713.69135 2139.05948 0.96 43.95 4022 4022 MS2 23/76 Linfeng_20130201_rIgG_3.raw High QEPSDSPmFIINR Unambiguous 1 1 Q02413 M8(Oxidation) CID 1.0000 0.0000 1 1 339 2.44 0.00 0 7 50 2 775.36798 1549.72869 -1.88 39.80 3582 3582 MS2 17/24 Linfeng_20130201_rIgG_2.raw Medium ALNSmGQDLERPLELR Unambiguous 1 1 Q02413 M5(Oxidation) CID 1.0000 0.0000 1 1 513 2.44 0.00 1 6 50 3 619.98798 1857.94937 0.30 40.31 3651 3651 MS2 17/60 Linfeng_20130201_rIgG_9.raw High EQYGQYALAVR Unambiguous 1 1 Q02413 CID 1.0000 0.0000 1 1 409 2.43 0.00 0 21 50 2 649.33081 1297.65434 0.60 38.03 2646 2646 MS2 16/20 Linfeng_20130204_CTCF_6.raw Medium ALNSmGQDLERPLELR Unambiguous 1 1 Q02413 M5(Oxidation) CID 1.0000 0.0000 1 1 523 2.43 0.00 1 14 50 3 619.98767 1857.94846 -0.20 39.95 3203 3203 MS2 16/60 Linfeng_20130204_CTCF_1.raw Medium ALNSmGQDLERPLELR Unambiguous 1 1 Q02413 M5(Oxidation) CID 1.0000 0.0000 1 1 504 2.42 0.00 1 24 5 3 619.98694 1857.94626 -1.38 40.19 3518 3518 MS2 17/60 Linfeng_20130201_rIgG_5.raw Medium VGDFVATDLDTGRPSTTVR Unambiguous 1 1 Q02413 CID 1.0000 0.0000 1 1 545 2.41 0.00 1 5 50 3 669.67688 2007.01609 0.91 39.58 3166 3166 MS2 20/72 Linfeng_20130204_CTCF_1.raw Medium VGDFVATDLDTGRPSTTVR Unambiguous 1 1 Q02413 CID 1.0000 0.0000 1 1 537 2.39 0.00 1 23 50 3 669.67847 2007.02085 3.28 39.56 3557 3557 MS2 25/72 Linfeng_20130201_rIgG_2.raw Medium VGDFVATDLDTGRPSTTVR Unambiguous 1 1 Q02413 CID 1.0000 0.0000 1 1 537 2.38 0.00 1 4 39 3 669.67804 2007.01957 2.64 39.87 2846 2846 MS2 22/72 Linfeng_20130204_CTCF_6.raw High EQYGQYALAVR Unambiguous 1 1 Q02413 CID 1.0000 0.0000 1 1 426 2.37 0.00 0 32 50 2 649.33014 1297.65300 -0.43 37.79 2981 2981 MS2 14/20 Linfeng_20130204_CTCF_1.raw Medium ALNSmGQDLERPLELR Unambiguous 1 1 Q02413 M5(Oxidation) CID 1.0000 0.0000 1 1 523 2.30 0.00 1 10 50 3 619.98889 1857.95212 1.77 40.10 3621 3621 MS2 19/60 Linfeng_20130201_rIgG_3.raw High EQYGQYALAVR Unambiguous 1 1 Q02413 CID 1.0000 0.0000 1 1 405 2.28 0.00 0 37 50 2 649.32892 1297.65056 -2.31 37.39 3357 3357 MS2 14/20 Linfeng_20130201_rIgG_1.raw High QEPSDSPmFIINR Unambiguous 1 1 Q02413 M8(Oxidation) CID 1.0000 0.0000 1 1 344 2.28 0.00 0 6 50 2 775.37036 1549.73345 1.19 39.70 3600 3600 MS2 12/24 Linfeng_20130201_rIgG_1.raw High EQYGQYALAVR Unambiguous 1 1 Q02413 CID 1.0000 0.0000 1 1 431 2.15 0.00 0 23 50 2 649.32977 1297.65227 -1.00 37.76 3380 3380 MS2 13/20 Linfeng_20130201_rIgG_10.raw High EQYGQYALAVR Unambiguous 1 1 Q02413 CID 1.0000 0.0000 1 1 446 2.14 0.00 0 25 50 2 649.33142 1297.65557 1.54 38.12 3459 3459 MS2 13/20 Linfeng_20130201_rIgG_6.raw B1AHC7 "X-ray repair complementing defective repair in Chinese hamster cells 6 (Ku autoantigen, 70kDa) OS=Homo sapiens GN=XRCC6 PE=4 SV=1 - [B1AHC7_HUMAN]" 15.44 5 7 7 7 20.63 15.44 7 7 557 64.0 6.83 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High NIYVLQELDNPGAK Unambiguous 3 1 B1AHC7 CID 1.0000 0.0000 1 1 561 3.91 0.00 0 30 50 2 787.41522 1573.82317 0.67 51.72 4084 4084 MS2 21/26 Linfeng_20130204_CTCF_4.raw High TFNTSTGGLLLPSDTK Unambiguous 5 1 B1AHC7 CID 1.0000 0.0000 1 1 386 3.84 0.00 0 9 50 2 826.42987 1651.85246 -0.82 46.53 3534 3534 MS2 21/30 Linfeng_20130204_CTCF_4.raw High DIISIAEDEDLR Unambiguous 5 1 B1AHC7 CID 1.0000 0.0000 1 1 413 2.99 0.00 0 12 50 2 694.84796 1388.68865 -1.29 51.22 4034 4034 MS2 19/22 Linfeng_20130204_CTCF_4.raw High ILELDQFK Unambiguous 4 1 B1AHC7 CID 1.0000 0.0000 1 1 444 2.62 0.00 0 10 50 2 503.28665 1005.56603 4.43 47.53 3639 3639 MS2 13/14 Linfeng_20130204_CTCF_4.raw Medium SDSFENPVLQQHFR Unambiguous 5 1 B1AHC7 CID 1.0000 0.0000 1 1 399 2.47 0.00 0 21 36 3 568.60858 1703.81119 -1.46 42.61 3132 3132 MS2 19/52 Linfeng_20130204_CTCF_4.raw High ELVYPPDYNPEGK Unambiguous 5 1 B1AHC7 CID 1.0000 0.0000 1 1 372 2.44 0.00 0 0 50 2 760.86823 1520.72917 1.56 39.37 2798 2798 MS2 19/24 Linfeng_20130204_CTCF_4.raw High LGSLVDEFK Unambiguous 5 1 B1AHC7 CID 1.0000 0.0000 1 1 417 2.36 0.00 0 5 50 2 504.27408 1007.54088 0.04 45.97 3476 3476 MS2 14/16 Linfeng_20130204_CTCF_4.raw P29508 Serpin B3 OS=Homo sapiens GN=SERPINB3 PE=1 SV=2 - [SPB3_HUMAN] 15.38 2 5 5 6 0.00 14.97 15.38 5 6 390 44.5 6.81 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High LMEWTSLQNMR Unambiguous 2 1 P29508 CID 1.0000 0.0000 1 1 357 2.80 0.00 0 38 50 2 704.83862 1408.66997 -0.90 51.79 4107 4107 MS2 15/20 Linfeng_20130204_CTCF_6.raw High GLVLSGVLHK Unambiguous 2 1 P29508 CID 1.0000 0.0000 1 1 72 2.77 0.00 0 32 50 2 511.82053 1022.63378 -1.92 41.13 2984 2984 MS2 15/18 Linfeng_20130204_CTCF_6.raw High TNSILFYGR Unambiguous 2 1 P29508 CID 1.0000 0.0000 1 1 448 2.43 0.00 0 20 43 2 535.78613 1070.56499 1.90 43.69 3254 3254 MS2 13/16 Linfeng_20130204_CTCF_6.raw Medium FKVEESYDLKDTLR Unambiguous 2 1 P29508 CID 1.0000 0.0000 1 1 494 2.42 0.00 2 11 27 3 581.63684 1742.89597 -0.02 40.20 2881 2881 MS2 23/52 Linfeng_20130204_CTCF_6.raw Medium QYTSFHFASLEDVQAK Unambiguous 1 1 P29508 CID 1.0000 0.0000 1 1 441 2.33 0.00 0 25 50 3 624.30536 1870.90152 2.39 47.40 3647 3647 MS2 13/60 Linfeng_20130204_CTCF_6.raw High TNSILFYGR Unambiguous 2 1 P29508 CID 1.0000 0.0000 1 1 446 2.23 0.00 0 13 40 2 535.78571 1070.56413 1.11 43.91 3278 3278 MS2 13/16 Linfeng_20130204_CTCF_6.raw Q8N1N4 "Keratin, type II cytoskeletal 78 OS=Homo sapiens GN=KRT78 PE=2 SV=2 - [K2C78_HUMAN]" 14.81 2 5 5 12 15.31 7.31 3 6 19.27 10.19 3 6 520 56.8 6.02 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High HLNEEELGQLQTQASDTSVVLSMDNNR Unambiguous 2 1 Q8N1N4 CID 1.0000 0.0000 1 1 356 4.73 0.00 0 0 50 3 1010.14923 3028.43314 1.78 49.09 3822 3822 MS2 29/104 Linfeng_20130204_CTCF_6.raw High YQELQVSAQLHGDR Unambiguous 2 1 Q8N1N4 CID 1.0000 0.0000 1 1 438 3.47 0.00 0 13 50 3 548.60925 1643.81321 -0.28 33.44 2184 2184 MS2 22/52 Linfeng_20130204_CTCF_6.raw High YQELQVSAQLHGDR Unambiguous 2 1 Q8N1N4 CID 1.0000 0.0000 1 1 440 3.31 0.00 0 4 34 3 548.60931 1643.81339 -0.17 34.47 2288 2288 MS2 21/52 Linfeng_20130204_CTCF_6.raw High ATLENDFVVLKK Unambiguous 2 1 Q8N1N4 CID 1.0000 0.0000 1 1 297 2.74 0.00 1 20 50 2 688.89349 1376.77971 0.91 43.19 3200 3200 MS2 16/22 Linfeng_20130204_CTCF_6.raw High TLNNQFASFIDK Unambiguous 1 1 Q8N1N4 CID 1.0000 0.0000 1 1 431 2.73 0.00 0 9 29 2 699.35687 1397.70647 0.33 50.13 4811 4811 MS2 17/22 Linfeng_20130201_rIgG_1.raw High YQELQVSAQLHGDR Unambiguous 2 1 Q8N1N4 CID 1.0000 0.0000 1 1 420 2.67 0.00 0 22 50 3 548.60736 1643.80753 -3.73 33.97 2600 2600 MS2 19/52 Linfeng_20130204_CTCF_1.raw High YQELQVSAQLHGDR Unambiguous 2 1 Q8N1N4 CID 1.0000 0.0000 1 1 411 2.62 0.00 0 42 50 3 548.60822 1643.81009 -2.17 33.31 3031 3031 MS2 21/52 Linfeng_20130201_rIgG_7.raw High YQELQVSAQLHGDR Unambiguous 2 1 Q8N1N4 CID 1.0000 0.0000 1 1 430 2.55 0.00 0 14 50 3 548.60864 1643.81137 -1.39 33.13 2916 2916 MS2 17/52 Linfeng_20130201_rIgG_3.raw High YQELQVSAQLHGDR Unambiguous 2 1 Q8N1N4 CID 1.0000 0.0000 1 1 444 2.53 0.00 0 74 50 3 548.60980 1643.81485 0.73 33.87 3004 3004 MS2 17/52 Linfeng_20130201_rIgG_1.raw High YQELQVSAQLHGDR Unambiguous 2 1 Q8N1N4 CID 1.0000 0.0000 1 1 411 2.52 0.00 0 6 50 3 548.60846 1643.81083 -1.73 33.28 2913 2913 MS2 21/52 Linfeng_20130201_rIgG_4.raw High LLcEYQELTSTK Unambiguous 1 1 Q8N1N4 C3(Carbamidomethyl) CID 1.0000 0.0000 1 1 472 2.35 0.00 0 18 43 2 742.86780 1484.72832 -1.24 40.59 3696 3696 MS2 16/22 Linfeng_20130201_rIgG_1.raw Medium ATLENDFVVLKK Unambiguous 2 1 Q8N1N4 CID 1.0000 0.0000 1 1 304 2.34 0.00 1 4 24 3 459.59808 1376.77970 0.90 43.08 3189 3189 MS2 19/44 Linfeng_20130204_CTCF_6.raw Q96P63 Serpin B12 OS=Homo sapiens GN=SERPINB12 PE=1 SV=1 - [SPB12_HUMAN] 14.57 2 4 4 10 10.53 10.62 3 4 17.11 14.57 4 6 405 46.2 5.53 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High TFVEVDENGTQAAAATGAVVSER Unambiguous 2 1 Q96P63 CID 1.0000 0.0000 1 1 509 3.92 0.00 0 7 43 3 774.71283 2322.12394 1.29 42.76 3156 3156 MS2 31/88 Linfeng_20130204_CTCF_6.raw High TFVEVDENGTQAAAATGAVVSER Unambiguous 2 1 Q96P63 CID 1.0000 0.0000 1 1 521 3.46 0.00 0 86 50 3 774.71204 2322.12156 0.27 42.50 3900 3900 MS2 25/88 Linfeng_20130201_rIgG_1.raw High ADLTGISPSPNLYLSK Unambiguous 2 1 Q96P63 CID 1.0000 0.0000 1 1 431 3.26 0.00 0 21 21 2 838.45337 1675.89946 5.53 47.93 3704 3704 MS2 16/30 Linfeng_20130204_CTCF_6.raw High IKTDYTLSIANR Unambiguous 2 1 Q96P63 CID 1.0000 0.0000 1 1 331 3.02 0.00 1 40 50 2 697.88867 1394.77007 4.46 36.32 2474 2474 MS2 19/22 Linfeng_20130204_CTCF_6.raw High IGFIEEVK Unambiguous 2 1 Q96P63 CID 1.0000 0.0000 1 1 308 2.48 0.00 0 39 50 2 467.76608 934.52489 0.46 42.29 3887 3887 MS2 13/14 Linfeng_20130201_rIgG_6.raw High IGFIEEVK Unambiguous 2 1 Q96P63 CID 1.0000 0.0000 1 1 309 2.33 0.00 0 18 50 2 467.76538 934.52349 -1.04 41.90 3405 3405 MS2 12/14 Linfeng_20130204_CTCF_1.raw Medium IKTDYTLSIANR Unambiguous 2 1 Q96P63 CID 1.0000 0.0000 1 1 359 2.31 0.00 1 27 22 3 465.59525 1394.77118 5.26 36.30 2472 2472 MS2 17/44 Linfeng_20130204_CTCF_6.raw High IGFIEEVK Unambiguous 2 1 Q96P63 CID 1.0000 0.0000 1 1 303 2.30 0.00 0 24 50 2 467.76593 934.52458 0.13 41.65 3810 3810 MS2 13/14 Linfeng_20130201_rIgG_1.raw Medium IKTDYTLSIANR Unambiguous 2 1 Q96P63 CID 1.0000 0.0000 1 1 320 2.29 0.00 1 21 50 3 465.59155 1394.76010 -2.69 36.13 3216 3216 MS2 18/44 Linfeng_20130201_rIgG_10.raw High IGFIEEVK Unambiguous 2 1 Q96P63 CID 1.0000 0.0000 1 1 303 2.28 0.00 0 7 50 2 467.76614 934.52501 0.59 42.29 3106 3106 MS2 13/14 Linfeng_20130204_CTCF_6.raw H0Y9Y4 40S ribosomal protein S3a (Fragment) OS=Homo sapiens GN=RPS3A PE=4 SV=1 - [H0Y9Y4_HUMAN] 14.42 3 3 3 3 7.04 14.42 3 3 208 23.5 9.86 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High LFcVGFTK Unambiguous 3 1 H0Y9Y4 C3(Carbamidomethyl) CID 1.0000 0.0000 1 1 354 2.38 0.00 0 10 50 2 486.25552 971.50377 1.88 45.70 3660 3660 MS2 13/14 Linfeng_20130204_CTCF_7.raw Medium AcQSIYPLHDVFVR Unambiguous 3 1 H0Y9Y4 C2(Carbamidomethyl) CID 1.0000 0.0000 1 1 538 2.34 0.00 0 14 24 3 568.95685 1704.85599 1.93 48.82 4014 4014 MS2 16/52 Linfeng_20130204_CTCF_7.raw High APAMFNIR Unambiguous 3 1 H0Y9Y4 CID 1.0000 0.0000 1 1 595 2.31 0.00 0 12 50 2 460.24515 919.48302 1.23 41.85 3254 3254 MS2 13/14 Linfeng_20130204_CTCF_7.raw Q92841-1 Isoform 2 of Probable ATP-dependent RNA helicase DDX17 OS=Homo sapiens GN=DDX17 - [DDX17_HUMAN] 14.15 7 3 7 12 6.82 5.85 3 3 26.16 14.15 7 9 650 72.3 8.59 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High ELAQQVQQVADDYGK Unambiguous 7 1 Q92841-1 CID 1.0000 0.0000 1 1 329 3.41 0.00 0 7 50 2 846.41736 1691.82744 2.29 44.44 3320 3320 MS2 19/28 Linfeng_20130204_CTCF_4.raw High APILIATDVASR Unambiguous 9 2 Q92841-1;E7ETL9 CID 1.0000 0.0000 1 1 153 3.35 0.00 0 22 23 2 613.85809 1226.70891 -1.20 42.59 3130 3130 MS2 18/22 Linfeng_20130204_CTCF_4.raw High MLDMGFEPQIR Unambiguous 9 2 Q92841-1;E7ETL9 CID 1.0000 0.0000 1 1 412 3.14 0.00 0 37 50 2 668.82611 1336.64495 4.53 50.97 4008 4008 MS2 16/20 Linfeng_20130204_CTCF_4.raw High GDGPIcLVLAPTR Unambiguous 9 2 Q92841-1;E7ETL9 C6(Carbamidomethyl) CID 1.0000 0.0000 1 1 369 3.08 0.00 0 23 50 2 684.87378 1368.74028 7.16 51.35 4047 4047 MS2 15/24 Linfeng_20130204_CTCF_4.raw High GTAYTFFTPGNLK Unambiguous 7 1 Q92841-1 CID 1.0000 0.0000 1 1 476 3.01 0.00 0 9 50 2 708.86572 1416.72417 5.88 51.60 4072 4072 MS2 16/24 Linfeng_20130204_CTCF_4.raw High MLDmGFEPQIR Unambiguous 9 2 Q92841-1;E7ETL9 M4(Oxidation) CID 1.0000 0.0000 1 1 337 2.70 0.00 0 9 50 2 676.82153 1352.63579 1.47 43.39 3211 3211 MS2 16/20 Linfeng_20130204_CTCF_4.raw High APILIATDVASR Unambiguous 9 2 Q92841-1;E7ETL9 CID 1.0000 0.0000 1 1 183 2.67 0.00 0 36 39 2 613.85846 1226.70964 -0.60 42.41 3850 3850 MS2 18/22 Linfeng_20130201_rIgG_4.raw High FVINYDYPNSSEDYVHR Unambiguous 7 1 Q92841-1 CID 1.0000 0.0000 1 1 207 2.63 0.00 0 20 50 3 706.65796 2117.95932 1.40 44.20 3295 3295 MS2 21/64 Linfeng_20130204_CTCF_4.raw High GVEIcIATPGR Unambiguous 9 2 Q92841-1;E7ETL9 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 412 2.43 0.00 0 26 50 2 586.81073 1172.61418 4.18 39.27 2787 2787 MS2 17/20 Linfeng_20130204_CTCF_4.raw High mLDmGFEPQIR Unambiguous 9 2 Q92841-1;E7ETL9 M1(Oxidation); M4(Oxidation) CID 1.0000 0.0000 1 1 267 2.40 0.00 0 20 50 2 684.81824 1368.62920 0.35 39.98 2862 2862 MS2 14/20 Linfeng_20130204_CTCF_4.raw High GVEIcIATPGR Unambiguous 9 2 Q92841-1;E7ETL9 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 544 2.13 0.00 0 21 50 2 586.81128 1172.61528 5.11 39.34 3529 3529 MS2 15/20 Linfeng_20130201_rIgG_4.raw High ELAQQVQQVADDYGK Unambiguous 7 1 Q92841-1 CID 1.0000 0.0000 1 1 432 2.03 0.00 0 15 50 2 846.41376 1691.82024 -1.97 44.31 4053 4053 MS2 11/28 Linfeng_20130201_rIgG_4.raw P11388 DNA topoisomerase 2-alpha OS=Homo sapiens GN=TOP2A PE=1 SV=3 - [TOP2A_HUMAN] 13.72 8 10 16 23 11.54 3.27 4 4 55.87 13.72 16 19 1531 174.3 8.72 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High NSTEcTLILTEGDSAK Unambiguous 8 1 P11388 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 352 4.39 0.00 0 0 50 2 869.91296 1738.81865 1.27 39.09 3068 3068 MS2 25/30 Linfeng_20130204_CTCF_2.raw High YSGPEDDAAISLAFSK Unambiguous 8 1 P11388 CID 1.0000 0.0000 1 1 305 4.04 0.00 0 8 10 2 835.89825 1670.78923 -0.99 49.61 4192 4192 MS2 20/30 Linfeng_20130204_CTCF_2.raw High IFDEILVNAADNK Unambiguous 11 2 P11388;Q02880-2 CID 1.0000 0.0000 1 1 591 3.74 0.00 0 19 50 2 731.38641 1461.76555 4.85 50.38 4279 4279 MS2 19/24 Linfeng_20130204_CTCF_2.raw High GFQQISFVNSIATSK Unambiguous 8 1 P11388 CID 1.0000 0.0000 1 1 363 3.43 0.00 0 27 50 2 813.92676 1626.84624 -1.49 51.45 4387 4387 MS2 20/28 Linfeng_20130204_CTCF_2.raw High IFDEILVNAADNK Unambiguous 11 2 P11388;Q02880-2 CID 1.0000 0.0000 1 1 623 3.38 0.00 0 30 46 2 731.38379 1461.76030 1.26 50.30 4726 4726 MS2 22/24 Linfeng_20130201_rIgG_2.raw High TLAVSGLGVVGR Unambiguous 8 1 P11388 CID 1.0000 0.0000 1 1 303 3.33 0.00 0 6 13 2 564.84052 1128.67375 0.13 43.55 3527 3527 MS2 20/22 Linfeng_20130204_CTCF_2.raw High QImENAEINNIIK Unambiguous 11 2 P11388;Q02880-2 M3(Oxidation) CID 1.0000 0.0000 1 1 566 3.30 0.00 0 6 50 2 773.40118 1545.79509 0.58 42.39 3409 3409 MS2 17/24 Linfeng_20130204_CTCF_2.raw High TLAVSGLGVVGR Unambiguous 8 1 P11388 CID 1.0000 0.0000 1 1 357 3.14 0.00 0 34 50 2 564.84003 1128.67278 -0.73 43.42 3954 3954 MS2 20/22 Linfeng_20130201_rIgG_2.raw High ELILFSNSDNER Unambiguous 11 2 P11388;Q02880-2 CID 1.0000 0.0000 1 1 466 3.00 0.00 0 13 15 2 718.85730 1436.70732 3.94 47.66 3967 3967 MS2 19/22 Linfeng_20130204_CTCF_2.raw High KEWLTNFmEDR Unambiguous 11 2 P11388;Q02880-2 M8(Oxidation) CID 1.0000 0.0000 1 1 276 2.93 0.00 1 24 50 3 495.56635 1484.68448 0.38 41.26 3292 3292 MS2 15/40 Linfeng_20130204_CTCF_2.raw High GFQQISFVNSIATSK Unambiguous 8 1 P11388 CID 1.0000 0.0000 1 1 453 2.90 0.00 0 31 50 3 542.95685 1626.85599 4.51 51.57 4399 4399 MS2 25/56 Linfeng_20130204_CTCF_2.raw High KYDTVLDILR Unambiguous 8 1 P11388 CID 1.0000 0.0000 1 1 263 2.90 0.00 1 20 50 2 618.35645 1235.70561 4.98 52.08 4448 4448 MS2 15/18 Linfeng_20130204_CTCF_2.raw High IKNENTEGSPQEDGVELEGLK Unambiguous 8 1 P11388 CID 1.0000 0.0000 1 1 465 2.85 0.00 1 9 50 3 762.70776 2286.10874 -0.42 36.46 2802 2802 MS2 24/80 Linfeng_20130204_CTCF_2.raw High SVVSDLEADDVK Unambiguous 8 1 P11388 CID 1.0000 0.0000 1 1 454 2.78 0.00 0 13 43 2 638.81683 1276.62639 -0.30 41.09 3274 3274 MS2 19/22 Linfeng_20130204_CTCF_2.raw High GSVPLSSSPPATHFPDETEITNPVPK Unambiguous 8 1 P11388 CID 1.0000 0.0000 1 1 512 2.73 0.00 0 0 34 3 902.12109 2704.34873 0.80 44.60 3640 3640 MS2 22/100 Linfeng_20130204_CTCF_2.raw High IFDEILVNAADNK Unambiguous 11 2 P11388;Q02880-2 CID 1.0000 0.0000 1 1 608 2.61 0.00 0 7 50 3 487.92395 1461.75730 -0.80 50.48 4289 4289 MS2 23/48 Linfeng_20130204_CTCF_2.raw High SVVSDLEADDVK Unambiguous 8 1 P11388 CID 1.0000 0.0000 1 1 446 2.56 0.00 0 19 50 2 638.81622 1276.62517 -1.25 40.75 3679 3679 MS2 18/22 Linfeng_20130201_rIgG_2.raw High QImENAEINNIIK Unambiguous 11 2 P11388;Q02880-2 M3(Oxidation) CID 1.0000 0.0000 1 1 530 2.46 0.00 0 6 50 2 773.40216 1545.79704 1.84 42.32 3839 3839 MS2 17/24 Linfeng_20130201_rIgG_2.raw High DKYGVFPLR Unambiguous 8 1 P11388 CID 1.0000 0.0000 1 1 337 2.36 0.00 1 42 50 2 547.80328 1094.59929 -0.06 41.44 3311 3311 MS2 13/16 Linfeng_20130204_CTCF_2.raw High SIPSMVDGLKPGQR Unambiguous 8 1 P11388 CID 1.0000 0.0000 1 1 452 2.21 0.00 1 19 50 2 742.89850 1484.78972 0.44 39.45 3105 3105 MS2 14/26 Linfeng_20130204_CTCF_2.raw High EVTFVPGLYK Unambiguous 11 2 P11388;Q02880-2 CID 1.0000 0.0000 1 1 348 2.21 0.00 0 6 46 2 576.81921 1152.63115 1.01 48.00 4005 4005 MS2 14/18 Linfeng_20130204_CTCF_2.raw High SVVSDLEADDVK Unambiguous 8 1 P11388 CID 1.0000 0.0000 1 1 439 2.10 0.00 0 21 50 2 638.81537 1276.62346 -2.59 41.43 3012 3012 MS2 18/22 Linfeng_20130204_CTCF_3.raw High YGVFPLR Unambiguous 11 2 P11388;Q02880-2 CID 1.0000 0.0000 1 1 311 2.07 0.00 0 11 50 2 426.24222 851.47716 -0.32 45.06 3687 3687 MS2 10/12 Linfeng_20130204_CTCF_2.raw Q86YZ3 Hornerin OS=Homo sapiens GN=HRNR PE=1 SV=2 - [HORN_HUMAN] 13.44 1 12 12 53 115.28 10.00 8 35 53.62 10.81 9 18 2850 282.2 10.04 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High GEQHGSSSGSSSSYGQHGSGSR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 43 5.24 0.00 0 0 50 3 708.29669 2122.87552 -0.67 15.42 771 771 MS2 32/84 Linfeng_20130201_rIgG_10.raw High GEQHGSSSGSSSSYGQHGSGSR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 42 4.81 0.00 0 2 50 3 708.29657 2122.87516 -0.85 15.40 317 317 MS2 29/84 Linfeng_20130204_CTCF_6.raw High HGSSSGSSSSYGQHGSGSR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 68 4.67 0.00 0 0 50 3 603.59021 1808.75608 0.98 15.26 770 770 MS2 31/72 Linfeng_20130201_rIgG_3.raw High HGSSSGSSSSYGQHGSGSR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 70 4.31 0.00 0 4 50 3 603.58978 1808.75479 0.27 15.29 757 757 MS2 32/72 Linfeng_20130201_rIgG_10.raw High GEQHGSSSGSSSSYGQHGSGSR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 43 4.28 0.00 0 0 50 3 708.29700 2122.87644 -0.24 15.44 777 777 MS2 26/84 Linfeng_20130201_rIgG_9.raw High GEQHGSSSGSSSSYGQHGSGSR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 48 4.26 0.00 0 0 50 3 708.29761 2122.87827 0.62 15.40 787 787 MS2 26/84 Linfeng_20130201_rIgG_3.raw High HGSSSGSSSSYGQHGSGSR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 70 4.10 0.00 0 6 50 3 603.59027 1808.75626 1.08 15.27 755 755 MS2 29/72 Linfeng_20130201_rIgG_5.raw High GEQHGSSSGSSSSYGQHGSGSR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 42 4.06 0.00 0 6 50 4 531.47412 2122.87465 -1.08 15.39 316 316 MS2 31/126 Linfeng_20130204_CTCF_6.raw High GEQHGSSSGSSSSYGQHGSGSR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 49 4.04 0.00 0 20 50 3 708.29883 2122.88193 2.35 15.39 772 772 MS2 26/84 Linfeng_20130201_rIgG_8.raw High HGSSSGSSSSYGQHGSGSR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 68 3.91 0.00 0 0 50 3 603.59003 1808.75553 0.68 15.31 761 761 MS2 32/72 Linfeng_20130201_rIgG_9.raw High HGSSSGSSSSYGQHGSGSR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 57 3.89 0.00 0 5 50 3 603.58936 1808.75351 -0.44 15.31 779 779 MS2 30/72 Linfeng_20130201_rIgG_2.raw High HGSSSGSSSSYGQHGSGSR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 86 3.75 0.00 0 0 26 3 603.59308 1808.76468 5.74 15.32 308 308 MS2 32/72 Linfeng_20130204_CTCF_6.raw High SEQHGSSSGSSSSYGQHGSGSR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 41 3.75 0.00 0 0 50 3 718.29980 2152.88486 -1.23 15.43 319 319 MS2 25/84 Linfeng_20130204_CTCF_6.raw High HGSGSGQSSSYGPYGSGSGWSSSR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 57 3.72 0.00 0 4 50 3 773.66162 2318.97031 1.96 31.27 1967 1967 MS2 27/92 Linfeng_20130204_CTCF_6.raw High HGSSSGSSSSYGQHGSGSR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 63 3.70 0.00 0 53 50 3 603.58948 1808.75388 -0.23 15.30 762 762 MS2 22/72 Linfeng_20130201_rIgG_7.raw High HGSSSGSSSSYGQHGSGSR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 63 3.60 0.00 0 0 50 3 603.58948 1808.75388 -0.23 15.30 749 749 MS2 28/72 Linfeng_20130201_rIgG_4.raw High GEQHGSSSGSSSSYGQHGSGSR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 47 3.56 0.00 0 54 50 3 708.29791 2122.87918 1.05 15.43 792 792 MS2 25/84 Linfeng_20130201_rIgG_2.raw High HGSSSGSSSSYGQHGSGSR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 61 3.44 0.00 0 2 50 3 603.58948 1808.75388 -0.23 15.30 767 767 MS2 30/72 Linfeng_20130201_rIgG_6.raw High QSLGHGQHGSGSGQSPSPSR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 308 3.39 0.00 0 2 50 3 649.97180 1947.90085 -0.42 15.74 829 829 MS2 24/76 Linfeng_20130201_rIgG_2.raw High HGAGSGQSLSHGR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 428 3.38 0.00 0 5 50 3 417.53656 1250.59513 -2.71 15.46 775 775 MS2 25/48 Linfeng_20130201_rIgG_10.raw High HGSSSGSSSSYGQHGSGSR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 57 3.32 0.00 0 0 50 3 603.58911 1808.75278 -0.84 15.27 759 759 MS2 28/72 Linfeng_20130201_rIgG_8.raw High SEQHGSSSGSSSSYGQHGSGSR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 46 3.31 0.00 0 0 50 3 718.30176 2152.89072 1.49 15.43 772 772 MS2 28/84 Linfeng_20130201_rIgG_10.raw High QSLGHGQHGSGSGQSPSPSR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 331 3.29 0.00 0 7 50 3 649.97327 1947.90525 1.84 15.72 800 800 MS2 25/76 Linfeng_20130201_rIgG_4.raw High GEQHGSSSGSSSSYGQHGSGSR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 42 3.27 0.00 0 20 50 4 531.47412 2122.87465 -1.08 15.40 770 770 MS2 35/126 Linfeng_20130201_rIgG_10.raw High QSLGHGQHGSGSGQSPSPSR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 302 3.02 0.00 0 1 50 3 649.97235 1947.90250 0.43 15.74 828 828 MS2 28/76 Linfeng_20130201_rIgG_3.raw High GPYESGSGHSSGLGHR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 214 3.00 0.00 0 23 50 2 792.86041 1584.71355 -0.92 17.01 973 973 MS2 16/30 Linfeng_20130201_rIgG_10.raw High HGSSSGSSSSYGQHGSGSR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 70 3.00 0.00 0 8 50 3 603.58984 1808.75498 0.37 15.30 286 286 MS2 24/72 Linfeng_20130204_CTCF_10.raw High QSLGHGQHGSGSGQSPSPSR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 313 2.95 0.00 0 3 50 3 649.97186 1947.90104 -0.32 15.72 808 808 MS2 22/76 Linfeng_20130201_rIgG_10.raw High QSLGHGQHGSGSGQSPSPSR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 298 2.87 0.00 0 1 50 3 649.97253 1947.90305 0.71 15.73 351 351 MS2 25/76 Linfeng_20130204_CTCF_6.raw High QSLGHGQHGSGSGQSPSPSR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 322 2.87 0.00 0 0 50 3 649.97296 1947.90433 1.37 15.73 818 818 MS2 24/76 Linfeng_20130201_rIgG_6.raw Medium GEQHGSSSGSSSSYGQHGSGSR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 43 2.86 0.00 0 0 50 4 531.47449 2122.87612 -0.39 15.40 779 779 MS2 31/126 Linfeng_20130201_rIgG_6.raw High GEQHGSSSGSSSSYGQHGSGSR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 49 2.85 0.00 0 10 50 3 708.29907 2122.88266 2.69 15.40 770 770 MS2 23/84 Linfeng_20130201_rIgG_5.raw High HGSGSGQSPGHGQR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 209 2.81 0.00 0 0 50 3 450.20786 1348.60901 -0.84 15.15 756 756 MS2 23/52 Linfeng_20130201_rIgG_2.raw High HGSSSGSSSSYGQHGSGSR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 70 2.78 0.00 0 3 50 3 603.58972 1808.75461 0.17 15.31 297 297 MS2 24/72 Linfeng_20130204_CTCF_8.raw Medium GEQHGSSSGSSSSYGQHGSGSR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 43 2.78 0.00 0 0 50 4 531.47443 2122.87588 -0.51 15.41 774 774 MS2 33/126 Linfeng_20130201_rIgG_9.raw High HGSGSGQSSSYGPYGSGSGWSSSR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 55 2.77 0.00 0 0 50 3 773.66095 2318.96830 1.09 31.34 2200 2200 MS2 28/92 Linfeng_20130204_CTCF_7.raw High QSLGHGQHGSGSGQSPSPSR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 327 2.75 0.00 0 9 50 3 649.97302 1947.90451 1.46 15.75 819 819 MS2 23/76 Linfeng_20130201_rIgG_7.raw High HGSSSGSSSSYGQHGSGSR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 69 2.68 0.00 0 6 50 3 603.59003 1808.75553 0.68 15.29 316 316 MS2 23/72 Linfeng_20130204_CTCF_2.raw High GPYESGSGHSSGLGHR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 245 2.62 0.00 0 0 50 2 792.86212 1584.71697 1.23 17.13 503 503 MS2 16/30 Linfeng_20130204_CTCF_6.raw High GSGSRQSPSYGR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 338 2.57 0.00 1 25 50 3 413.53308 1238.58469 -2.09 15.97 852 852 MS2 16/44 Linfeng_20130201_rIgG_2.raw High HGSSSGSSSSYGQHGSGSR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 70 2.57 0.00 0 15 50 3 603.59039 1808.75663 1.29 15.24 289 289 MS2 28/72 Linfeng_20130204_CTCF_9.raw High HGSGSGQSSGFGHK Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 174 2.54 0.00 0 9 50 3 443.86856 1329.59113 -1.48 15.53 330 330 MS2 20/52 Linfeng_20130204_CTCF_6.raw Medium HGSSSGSSSSYGQHGSGSR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 70 2.50 0.00 0 0 50 3 603.59064 1808.75736 1.69 15.23 290 290 MS2 24/72 Linfeng_20130204_CTCF_7.raw Medium HGAGSGQSLSHGR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 418 2.48 0.00 0 21 50 3 417.53711 1250.59677 -1.40 15.46 768 768 MS2 16/48 Linfeng_20130201_rIgG_4.raw Medium QSLGHGQHGSGSGQSPSPSR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 294 2.41 0.00 0 0 50 3 649.97070 1947.89756 -2.11 15.86 828 828 MS2 23/76 Linfeng_20130201_rIgG_9.raw Medium GPYESGSGHSSGLGHR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 224 2.40 0.00 0 25 50 3 528.90875 1584.71170 -2.09 16.83 509 509 MS2 26/60 Linfeng_20130204_CTCF_1.raw Medium HGAGSGQSLSHGR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 415 2.36 0.00 0 58 50 3 417.53702 1250.59650 -1.62 15.43 790 790 MS2 21/48 Linfeng_20130201_rIgG_3.raw Medium QSLGHGQHGSGSGQSPSPSR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 306 2.36 0.00 0 0 50 3 649.97223 1947.90213 0.24 15.72 812 812 MS2 26/76 Linfeng_20130201_rIgG_9.raw Medium HGSGSGQSSSYSPYGSGSGWSSSR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 59 2.30 0.00 0 37 50 3 783.66522 2348.98111 2.04 30.91 2258 2258 MS2 24/92 Linfeng_20130204_CTCF_2.raw Medium HGSSSGSSSSYGQHGSGSR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 63 2.25 0.00 0 5 50 3 603.58948 1808.75388 -0.23 15.26 307 307 MS2 29/72 Linfeng_20130204_CTCF_1.raw High GSGSGQSPSYGR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 184 2.24 0.00 0 25 50 2 570.25647 1139.50566 -1.73 16.83 467 467 MS2 12/22 Linfeng_20130204_CTCF_6.raw High GSGSRQSPSYGR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 346 2.18 0.00 1 16 50 2 619.79663 1238.58599 -1.05 15.98 853 853 MS2 10/22 Linfeng_20130201_rIgG_2.raw High GSGSRQSPSYGR Unambiguous 1 1 Q86YZ3 CID 1.0000 0.0000 1 1 347 2.06 0.00 1 7 50 2 619.79675 1238.58623 -0.85 16.02 855 855 MS2 12/22 Linfeng_20130201_rIgG_1.raw E9PBF6 Lamin-B1 OS=Homo sapiens GN=LMNB1 PE=3 SV=1 - [E9PBF6_HUMAN] 13.18 2 4 4 6 9.23 9.04 3 3 12.11 10.34 3 3 387 44.6 5.05 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High SLETENSALQLQVTER Unambiguous 2 1 E9PBF6 CID 1.0000 0.0000 1 1 546 4.74 0.00 0 0 50 2 909.46869 1817.93010 3.34 42.49 3120 3120 MS2 24/30 Linfeng_20130204_CTCF_4.raw High IESLSSQLSNLQK Unambiguous 2 1 E9PBF6 CID 1.0000 0.0000 1 1 506 3.76 0.00 0 7 50 2 723.89435 1446.78142 1.05 44.12 3287 3287 MS2 20/24 Linfeng_20130204_CTCF_4.raw High IESLSSQLSNLQK Unambiguous 2 1 E9PBF6 CID 1.0000 0.0000 1 1 511 3.62 0.00 0 18 50 2 723.89380 1446.78032 0.29 43.92 4012 4012 MS2 20/24 Linfeng_20130201_rIgG_4.raw High ALYETELADAR Unambiguous 2 1 E9PBF6 CID 1.0000 0.0000 1 1 469 3.61 0.00 0 9 50 2 626.31427 1251.62126 -0.28 37.67 2625 2625 MS2 17/20 Linfeng_20130204_CTCF_4.raw High ALYETELADAR Unambiguous 2 1 E9PBF6 CID 1.0000 0.0000 1 1 491 3.13 0.00 0 11 50 2 626.31396 1251.62065 -0.77 37.36 3322 3322 MS2 18/20 Linfeng_20130201_rIgG_4.raw High LALDmEISAYR Unambiguous 2 1 E9PBF6 M5(Oxidation) CID 1.0000 0.0000 1 1 324 2.48 0.00 0 31 50 2 649.32605 1297.64482 -0.70 44.30 4052 4052 MS2 17/20 Linfeng_20130201_rIgG_4.raw P11142 Heat shock cognate 71 kDa protein OS=Homo sapiens GN=HSPA8 PE=1 SV=1 - [HSP7C_HUMAN] 13.16 13 5 7 10 0.00 32.78 13.16 7 10 646 70.9 5.52 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High IINEPTAAAIAYGLDK Unambiguous 10 2 P11021;P11142 CID 1.0000 0.0000 1 1 391 4.58 0.00 0 12 43 2 830.45068 1659.89409 -0.72 50.43 3951 3951 MS2 25/30 Linfeng_20130204_CTCF_4.raw High NQVAMNPTNTVFDAK Unambiguous 9 1 P11142 CID 1.0000 0.0000 1 1 350 3.91 0.00 0 4 50 2 825.40192 1649.79656 0.78 40.81 2947 2947 MS2 21/28 Linfeng_20130204_CTCF_4.raw High TVTNAVVTVPAYFNDSQR Unambiguous 9 1 P11142 CID 1.0000 0.0000 1 1 514 3.54 0.00 0 7 50 3 661.34003 1982.00553 3.87 48.59 3751 3751 MS2 26/68 Linfeng_20130204_CTCF_4.raw High FEELNADLFR Unambiguous 8 1 P11142 CID 1.0000 0.0000 1 1 479 3.51 0.00 0 7 50 2 627.31281 1253.61833 1.75 52.06 4118 4118 MS2 15/18 Linfeng_20130204_CTCF_4.raw High ARFEELNADLFR Unambiguous 8 1 P11142 CID 1.0000 0.0000 1 1 502 3.01 0.00 1 10 50 3 494.25729 1480.75733 1.99 48.81 3774 3774 MS2 20/44 Linfeng_20130204_CTCF_4.raw High NSLESYAFNmK Unambiguous 4 1 P11142 M10(Oxidation) CID 1.0000 0.0000 1 1 156 2.99 0.00 0 29 50 2 660.30103 1319.59477 0.83 39.03 2762 2762 MS2 15/20 Linfeng_20130204_CTCF_4.raw High TTPSYVAFTDTER Unambiguous 16 2 P08107;P11142 CID 1.0000 0.0000 1 1 319 2.93 0.00 0 5 45 2 744.35468 1487.70207 0.51 40.01 2861 2861 MS2 18/24 Linfeng_20130204_CTCF_6.raw High NQVAmNPTNTVFDAK Unambiguous 9 1 P11142 M5(Oxidation) CID 1.0000 0.0000 1 1 355 2.87 0.00 0 0 50 2 833.39990 1665.79253 1.41 35.18 2377 2377 MS2 17/28 Linfeng_20130204_CTCF_4.raw High TTPSYVAFTDTER Unambiguous 16 2 P08107;P11142 CID 1.0000 0.0000 1 1 317 2.73 0.00 0 16 50 2 744.35541 1487.70354 1.50 39.83 2847 2847 MS2 17/24 Linfeng_20130204_CTCF_4.raw High NSLESYAFNMK Unambiguous 4 1 P11142 CID 1.0000 0.0000 1 1 252 2.71 0.00 0 38 50 2 652.30579 1303.60430 4.25 46.36 3517 3517 MS2 16/20 Linfeng_20130204_CTCF_4.raw Q9NR30-2 Isoform 2 of Nucleolar RNA helicase 2 OS=Homo sapiens GN=DDX21 - [DDX21_HUMAN] 13.15 2 8 9 11 31.36 13.15 9 11 715 79.6 9.38 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High EGAFSNFPISEETIK Unambiguous 4 2 Q9NR30-2;F5H3H6 CID 1.0000 0.0000 1 1 397 3.66 0.00 0 12 14 2 834.91010 1668.81291 0.77 50.86 3996 3996 MS2 20/28 Linfeng_20130204_CTCF_3.raw High LSVAcFYGGTPYGGQFER Unambiguous 2 1 Q9NR30-2 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 297 3.61 0.00 0 2 50 2 1004.97327 2008.93926 8.47 51.65 4076 4076 MS2 19/34 Linfeng_20130204_CTCF_3.raw High STYEQVDLIGK Unambiguous 2 1 Q9NR30-2 CID 1.0000 0.0000 1 1 459 3.45 0.00 0 14 50 2 626.82458 1252.64189 -0.09 38.13 2675 2675 MS2 17/20 Linfeng_20130204_CTCF_3.raw High TAITVEHLAIK Unambiguous 2 1 Q9NR30-2 CID 1.0000 0.0000 1 1 209 3.23 0.00 0 31 50 2 598.35614 1195.70500 0.38 37.24 2587 2587 MS2 17/20 Linfeng_20130204_CTCF_3.raw High APQVLVLAPTR Unambiguous 2 1 Q9NR30-2 CID 1.0000 0.0000 1 1 81 3.19 0.00 0 52 50 2 582.86127 1164.71526 4.53 41.69 3040 3040 MS2 16/20 Linfeng_20130204_CTCF_3.raw High GRAPQVLVLAPTR Unambiguous 2 1 Q9NR30-2 CID 1.0000 0.0000 1 1 85 2.67 0.00 1 11 50 3 459.94855 1377.83109 -1.08 37.29 2591 2591 MS2 19/48 Linfeng_20130204_CTCF_3.raw High LLDSVPPTAISHFK Unambiguous 2 1 Q9NR30-2 CID 1.0000 0.0000 1 1 329 2.51 0.00 0 4 50 3 508.95135 1524.83951 -1.71 43.20 3194 3194 MS2 28/52 Linfeng_20130204_CTCF_3.raw Medium KLSVAcFYGGTPYGGQFER Unambiguous 2 1 Q9NR30-2 C6(Carbamidomethyl) CID 1.0000 0.0000 1 1 490 2.49 0.00 1 32 50 3 713.01636 2137.03452 8.10 47.50 3636 3636 MS2 22/72 Linfeng_20130204_CTCF_3.raw High GRAPQVLVLAPTR Unambiguous 2 1 Q9NR30-2 CID 1.0000 0.0000 1 1 87 2.31 0.00 1 37 50 2 689.42004 1377.83281 0.17 37.43 2605 2605 MS2 16/24 Linfeng_20130204_CTCF_3.raw High IGVPSATEIIK Unambiguous 2 1 Q9NR30-2 CID 1.0000 0.0000 1 1 250 2.14 0.00 0 52 50 2 564.33673 1127.66619 -0.82 43.95 3269 3269 MS2 12/20 Linfeng_20130204_CTCF_4.raw High IGVPSATEIIK Unambiguous 2 1 Q9NR30-2 CID 1.0000 0.0000 1 1 247 2.09 0.00 0 15 50 2 564.33710 1127.66692 -0.17 43.63 3238 3238 MS2 17/20 Linfeng_20130204_CTCF_3.raw Q00839-2 Isoform Short of Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU - [HNRPU_HUMAN] 11.66 3 6 6 16 29.52 9.31 4 8 28.15 9.68 5 8 806 88.9 5.78 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High NFILDQTNVSAAAQR Unambiguous 3 1 Q00839-2 CID 1.0000 0.0000 1 1 566 4.94 0.00 0 27 50 2 824.42657 1647.84587 0.54 43.33 3945 3945 MS2 25/28 Linfeng_20130201_rIgG_2.raw High LQAALDDEEAGGRPAmEPGNGSLDLGGDSAGR Unambiguous 2 1 Q00839-2 M16(Oxidation) CID 1.0000 0.0000 1 1 230 4.84 0.00 1 0 50 3 1048.14978 3142.43479 0.13 38.54 3458 3458 MS2 40/124 Linfeng_20130201_rIgG_3.raw High NFILDQTNVSAAAQR Unambiguous 3 1 Q00839-2 CID 1.0000 0.0000 1 1 554 4.64 0.00 0 0 50 2 824.42657 1647.84587 0.54 43.61 3236 3236 MS2 24/28 Linfeng_20130204_CTCF_3.raw High LQAALDDEEAGGRPAMEPGNGSLDLGGDSAGR Unambiguous 2 1 Q00839-2 CID 1.0000 0.0000 1 1 255 4.52 0.00 1 0 50 3 1042.81726 3126.43723 -0.71 42.09 3080 3080 MS2 31/124 Linfeng_20130204_CTCF_3.raw High NFILDQTNVSAAAQR Unambiguous 3 1 Q00839-2 CID 1.0000 0.0000 1 1 566 4.49 0.00 0 0 50 2 824.42657 1647.84587 0.54 43.38 3962 3962 MS2 25/28 Linfeng_20130201_rIgG_3.raw High NFILDQTNVSAAAQR Unambiguous 3 1 Q00839-2 CID 1.0000 0.0000 1 1 556 4.39 0.00 0 32 50 2 824.42603 1647.84477 -0.13 43.32 3989 3989 MS2 23/28 Linfeng_20130201_rIgG_1.raw High YNILGTNTIMDK Unambiguous 3 1 Q00839-2 CID 1.0000 0.0000 1 1 475 3.74 0.00 0 15 50 2 691.85626 1382.70525 4.89 47.48 3634 3634 MS2 20/22 Linfeng_20130204_CTCF_3.raw High LQAALDDEEAGGRPAmEPGNGSLDLGGDSAGR Unambiguous 2 1 Q00839-2 M16(Oxidation) CID 1.0000 0.0000 1 1 238 3.63 0.00 1 0 50 3 1048.15039 3142.43662 0.71 38.69 2732 2732 MS2 26/124 Linfeng_20130204_CTCF_3.raw High GYFEYIEENK Unambiguous 3 1 Q00839-2 CID 1.0000 0.0000 1 1 221 3.56 0.00 0 6 25 2 646.29730 1291.58733 2.47 45.10 3390 3390 MS2 15/18 Linfeng_20130204_CTCF_3.raw High YNILGTNTImDK Unambiguous 3 1 Q00839-2 M10(Oxidation) CID 1.0000 0.0000 1 1 433 3.51 0.00 0 14 50 2 699.85059 1398.69390 0.36 41.17 2985 2985 MS2 19/22 Linfeng_20130204_CTCF_3.raw High KDcEVVmmIGLPGAGK Unambiguous 3 1 Q00839-2 C3(Carbamidomethyl); M7(Oxidation); M8(Oxidation) CID 1.0000 0.0000 1 1 442 3.12 0.00 1 41 50 3 579.61743 1736.83774 -0.20 37.76 3378 3378 MS2 29/60 Linfeng_20130201_rIgG_3.raw High YNILGTNTImDK Unambiguous 3 1 Q00839-2 M10(Oxidation) CID 1.0000 0.0000 1 1 427 2.83 0.00 0 14 50 2 699.85065 1398.69402 0.44 40.98 3703 3703 MS2 19/22 Linfeng_20130201_rIgG_2.raw High YNILGTNTImDK Unambiguous 3 1 Q00839-2 M10(Oxidation) CID 1.0000 0.0000 1 1 481 2.81 0.00 0 24 50 2 699.85016 1398.69304 -0.25 40.95 3708 3708 MS2 19/22 Linfeng_20130201_rIgG_3.raw High mcLFAGFQR Unambiguous 3 1 Q00839-2 M1(Oxidation); C2(Carbamidomethyl) CID 1.0000 0.0000 1 1 175 2.37 0.00 0 12 50 2 573.26733 1145.52739 3.74 46.90 3574 3574 MS2 14/16 Linfeng_20130204_CTCF_3.raw High GYFEYIEENK Unambiguous 3 1 Q00839-2 CID 1.0000 0.0000 1 1 207 2.18 0.00 0 57 50 2 646.29510 1291.58293 -0.94 45.32 3410 3410 MS2 14/18 Linfeng_20130204_CTCF_4.raw High YNILGTNTImDK Unambiguous 3 1 Q00839-2 M10(Oxidation) CID 1.0000 0.0000 1 1 477 2.11 0.00 0 7 50 2 699.85138 1398.69548 1.49 41.30 3734 3734 MS2 18/22 Linfeng_20130201_rIgG_4.raw G8JLG2 Corneodesmosin OS=Homo sapiens GN=CDSN PE=4 SV=1 - [G8JLG2_HUMAN] 10.96 3 5 5 7 0.00 21.09 10.96 5 7 529 51.6 8.44 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High ENPVKGSPGVPSFAAGPPISEGK Unambiguous 3 1 G8JLG2 CID 1.0000 0.0000 1 1 521 3.78 0.00 1 19 50 3 741.38843 2222.15073 2.44 41.15 2986 2986 MS2 23/88 Linfeng_20130204_CTCF_6.raw High SYGGYEVVGGSSDSYLVPGMTYSK Unambiguous 3 1 G8JLG2 CID 1.0000 0.0000 1 1 183 3.76 0.00 0 0 48 2 1252.07092 2503.13457 0.46 51.04 4031 4031 MS2 23/46 Linfeng_20130204_CTCF_6.raw High GSPGVPSFAAGPPISEGK Unambiguous 3 1 G8JLG2 CID 1.0000 0.0000 1 1 378 3.46 0.00 0 18 50 2 827.92743 1654.84758 2.40 43.23 3204 3204 MS2 20/34 Linfeng_20130204_CTCF_6.raw High GKIYPVGYFTK Unambiguous 3 1 G8JLG2 CID 1.0000 0.0000 1 1 571 2.75 0.00 1 11 39 3 424.90399 1272.69742 -1.02 40.86 2953 2953 MS2 18/40 Linfeng_20130204_CTCF_6.raw High SYGGYEVVGGSSDSYLVPGmTYSK Unambiguous 3 1 G8JLG2 M20(Oxidation) CID 1.0000 0.0000 1 1 180 2.73 0.00 0 0 37 3 840.37982 2519.12491 -1.36 46.27 3533 3533 MS2 22/92 Linfeng_20130204_CTCF_6.raw High GKIYPVGYFTK Unambiguous 3 1 G8JLG2 CID 1.0000 0.0000 1 1 555 2.40 0.00 1 28 50 2 636.85425 1272.70122 1.96 40.74 2939 2939 MS2 15/20 Linfeng_20130204_CTCF_6.raw High IYPVGYFTK Unambiguous 3 1 G8JLG2 CID 1.0000 0.0000 1 1 692 2.22 0.00 0 11 25 2 544.29547 1087.58367 1.27 45.92 3496 3496 MS2 14/16 Linfeng_20130204_CTCF_6.raw Q08211 ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4 - [DHX9_HUMAN] 10.94 2 10 10 23 19.73 5.98 6 6 54.15 9.84 9 17 1270 140.9 6.84 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High GISHVIVDEIHER Unambiguous 2 1 Q08211 CID 1.0000 0.0000 1 1 566 4.25 0.00 0 0 50 3 501.93503 1503.79053 -0.63 36.33 3228 3228 MS2 28/48 Linfeng_20130201_rIgG_2.raw High AENNSEVGASGYGVPGPTWDR Unambiguous 2 1 Q08211 CID 1.0000 0.0000 1 1 142 4.25 0.00 0 0 50 2 1081.99194 2162.97661 1.28 42.34 3403 3403 MS2 26/40 Linfeng_20130204_CTCF_2.raw High GISHVIVDEIHER Unambiguous 2 1 Q08211 CID 1.0000 0.0000 1 1 587 4.17 0.00 0 2 50 3 501.93521 1503.79108 -0.27 36.68 2824 2824 MS2 23/48 Linfeng_20130204_CTCF_2.raw High TPLHEIALSIK Unambiguous 1 1 Q08211 CID 1.0000 0.0000 1 1 134 3.90 0.00 0 38 50 3 407.91119 1221.71903 -0.96 42.54 3862 3862 MS2 23/40 Linfeng_20130201_rIgG_2.raw High LAAQScALSLVR Unambiguous 2 1 Q08211 C6(Carbamidomethyl) CID 1.0000 0.0000 1 1 515 3.85 0.00 0 28 40 2 644.85596 1288.70464 0.30 42.26 3395 3395 MS2 20/22 Linfeng_20130204_CTCF_2.raw High PSAAGINLmIGSTR Unambiguous 1 1 Q08211 M9(Oxidation) CID 1.0000 0.0000 1 1 570 3.84 0.00 0 38 50 2 702.36920 1403.73113 -0.06 41.51 3757 3757 MS2 22/26 Linfeng_20130201_rIgG_2.raw High GISHVIVDEIHER Unambiguous 2 1 Q08211 CID 1.0000 0.0000 1 1 546 3.59 0.00 0 5 50 3 501.93484 1503.78998 -1.00 37.03 2565 2565 MS2 24/48 Linfeng_20130204_CTCF_3.raw High ELDALDANDELTPLGR Unambiguous 1 1 Q08211 CID 1.0000 0.0000 1 1 430 3.57 0.00 0 10 16 2 871.43524 1741.86321 1.62 49.77 4212 4212 MS2 20/30 Linfeng_20130204_CTCF_2.raw High TPLHEIALSIK Unambiguous 1 1 Q08211 CID 1.0000 0.0000 1 1 136 3.51 0.00 0 3 50 3 407.91107 1221.71866 -1.26 42.78 3447 3447 MS2 20/40 Linfeng_20130204_CTCF_2.raw High AENNSEVGASGYGVPGPTWDR Unambiguous 2 1 Q08211 CID 1.0000 0.0000 1 1 181 3.39 0.00 0 9 50 3 721.66296 2162.97434 0.23 42.33 3402 3402 MS2 25/80 Linfeng_20130204_CTCF_2.raw High LAAQScALSLVR Unambiguous 2 1 Q08211 C6(Carbamidomethyl) CID 1.0000 0.0000 1 1 529 3.22 0.00 0 47 50 2 644.85492 1288.70256 -1.31 42.46 3119 3119 MS2 17/22 Linfeng_20130204_CTCF_3.raw High TPLHEIALSIK Unambiguous 1 1 Q08211 CID 1.0000 0.0000 1 1 178 3.05 0.00 0 12 50 3 407.91205 1221.72159 1.14 43.12 3185 3185 MS2 22/40 Linfeng_20130204_CTCF_3.raw High LQISHEAAAcITGLR Unambiguous 1 1 Q08211 C10(Carbamidomethyl) CID 1.0000 0.0000 1 1 451 3.02 0.00 0 19 50 3 547.29205 1639.86161 1.88 40.67 3670 3670 MS2 22/56 Linfeng_20130201_rIgG_2.raw High GISHVIVDEIHER Unambiguous 2 1 Q08211 CID 1.0000 0.0000 1 1 574 2.95 0.00 0 5 50 3 501.93439 1503.78861 -1.91 37.83 2938 2938 MS2 19/48 Linfeng_20130204_CTCF_2.raw High LAAQScALSLVR Unambiguous 2 1 Q08211 C6(Carbamidomethyl) CID 1.0000 0.0000 1 1 473 2.94 0.00 0 45 50 2 644.85730 1288.70732 2.39 42.55 3126 3126 MS2 15/22 Linfeng_20130204_CTCF_4.raw High TPLHEIALSIK Unambiguous 1 1 Q08211 CID 1.0000 0.0000 1 1 180 2.85 0.00 0 33 50 2 611.36401 1221.72075 0.45 43.18 3489 3489 MS2 17/20 Linfeng_20130204_CTCF_2.raw High LQISHEAAAcITGLR Unambiguous 1 1 Q08211 C10(Carbamidomethyl) CID 1.0000 0.0000 1 1 467 2.83 0.00 0 9 31 3 547.29095 1639.85831 -0.13 40.88 3252 3252 MS2 22/56 Linfeng_20130204_CTCF_2.raw High LQISHEAAAcITGLR Unambiguous 1 1 Q08211 C10(Carbamidomethyl) CID 1.0000 0.0000 1 1 434 2.70 0.00 0 15 50 3 547.29333 1639.86545 4.22 41.05 2973 2973 MS2 22/56 Linfeng_20130204_CTCF_3.raw High LFTAHNNmTNYATVWASK Unambiguous 1 1 Q08211 M8(Oxidation) CID 1.0000 0.0000 1 1 373 2.68 0.00 0 13 50 3 695.66705 2084.98661 0.34 42.18 3387 3387 MS2 18/68 Linfeng_20130204_CTCF_2.raw High LAAQScALSLVR Unambiguous 2 1 Q08211 C6(Carbamidomethyl) CID 1.0000 0.0000 1 1 515 2.49 0.00 0 48 50 2 644.85596 1288.70464 0.30 42.00 3807 3807 MS2 17/22 Linfeng_20130201_rIgG_2.raw High DFVNYLVR Unambiguous 2 1 Q08211 CID 1.0000 0.0000 1 1 351 2.32 0.00 0 15 50 2 513.27576 1025.54424 2.68 51.01 4343 4343 MS2 13/14 Linfeng_20130204_CTCF_2.raw High VFDPVPVGVTK Unambiguous 1 1 Q08211 CID 1.0000 0.0000 1 1 450 2.29 0.00 0 12 50 2 579.33087 1157.65447 -1.80 42.87 3457 3457 MS2 18/20 Linfeng_20130204_CTCF_2.raw High VFDPVPVGVTK Unambiguous 1 1 Q08211 CID 1.0000 0.0000 1 1 485 2.23 0.00 0 16 50 2 579.33197 1157.65666 0.10 42.73 3882 3882 MS2 16/20 Linfeng_20130201_rIgG_2.raw P05141 ADP/ATP translocase 2 OS=Homo sapiens GN=SLC25A5 PE=1 SV=7 - [ADT2_HUMAN] 10.74 1 3 3 3 0.00 8.52 10.74 3 3 298 32.8 9.69 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High DFLAGGVAAAISK Unambiguous 1 1 P05141 CID 1.0000 0.0000 1 1 441 3.99 0.00 0 21 50 2 610.33966 1219.67204 3.16 50.86 4256 4256 MS2 21/24 Linfeng_20130204_CTCF_7.raw High AAYFGIYDTAK Unambiguous 1 1 P05141 CID 1.0000 0.0000 1 1 447 2.47 0.00 0 22 43 2 610.30414 1219.60100 1.31 44.67 3550 3550 MS2 16/20 Linfeng_20130204_CTCF_7.raw High GAWSNVLR Unambiguous 1 1 P05141 CID 1.0000 0.0000 1 1 714 2.06 0.00 0 15 50 2 451.74677 902.48625 2.14 40.46 3109 3109 MS2 12/14 Linfeng_20130204_CTCF_7.raw P02768 Serum albumin OS=Homo sapiens GN=ALB PE=1 SV=2 - [ALBU_HUMAN] 10.51 9 7 7 85 192.39 10.51 7 56 88.94 10.02 6 29 609 69.3 6.28 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High RHPDYSVVLLLR Unambiguous 8 1 P02768 CID 1.0000 0.0000 1 1 225 4.41 0.00 1 2 30 3 489.95169 1467.84052 -1.77 48.17 4486 4486 MS2 27/44 Linfeng_20130201_rIgG_3.raw High KVPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 196 4.29 0.00 1 11 50 3 547.31799 1639.93943 0.98 38.57 3455 3455 MS2 26/56 Linfeng_20130201_rIgG_2.raw High KVPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 200 4.27 0.00 1 2 11 3 547.31738 1639.93760 -0.14 38.54 3476 3476 MS2 31/56 Linfeng_20130201_rIgG_1.raw High YTKKVPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 170 4.25 0.00 2 26 50 3 678.05206 2032.14164 -1.06 36.00 3201 3201 MS2 27/68 Linfeng_20130201_rIgG_3.raw High KVPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 183 4.22 0.00 1 6 50 3 547.31836 1639.94052 1.65 38.83 3473 3473 MS2 29/56 Linfeng_20130201_rIgG_4.raw High KVPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 201 4.16 0.00 1 4 50 3 547.31744 1639.93778 -0.03 38.90 3539 3539 MS2 27/56 Linfeng_20130201_rIgG_6.raw High YTKKVPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 170 4.12 0.00 2 28 50 3 678.05182 2032.14090 -1.42 36.01 3215 3215 MS2 25/68 Linfeng_20130201_rIgG_9.raw High KVPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 208 3.93 0.00 1 12 50 3 547.31720 1639.93705 -0.47 38.90 3590 3590 MS2 27/56 Linfeng_20130201_rIgG_7.raw High KVPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 163 3.91 0.00 1 6 23 2 820.47266 1639.93804 0.13 38.61 3485 3485 MS2 19/28 Linfeng_20130201_rIgG_1.raw High YTKKVPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 171 3.90 0.00 2 28 50 3 678.05182 2032.14090 -1.42 35.96 3199 3199 MS2 27/68 Linfeng_20130201_rIgG_10.raw High YTKKVPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 160 3.84 0.00 2 35 50 3 678.05261 2032.14328 -0.25 35.62 3179 3179 MS2 27/68 Linfeng_20130201_rIgG_1.raw High KVPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 197 3.83 0.00 1 11 21 3 547.31775 1639.93869 0.53 38.72 3456 3456 MS2 27/56 Linfeng_20130201_rIgG_8.raw High YTKKVPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 172 3.83 0.00 2 21 50 3 678.05151 2032.13999 -1.87 35.96 3242 3242 MS2 27/68 Linfeng_20130201_rIgG_6.raw High YTKKVPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 170 3.82 0.00 2 32 50 3 678.05212 2032.14182 -0.97 36.00 3297 3297 MS2 26/68 Linfeng_20130201_rIgG_7.raw High KVPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 198 3.77 0.00 1 1 25 3 547.31781 1639.93888 0.64 38.82 3487 3487 MS2 25/56 Linfeng_20130201_rIgG_3.raw High YTKKVPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 159 3.76 0.00 2 23 50 3 678.05292 2032.14420 0.20 35.65 3160 3160 MS2 25/68 Linfeng_20130201_rIgG_2.raw High KVPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 160 3.76 0.00 1 0 50 2 820.47302 1639.93877 0.58 38.93 3484 3484 MS2 21/28 Linfeng_20130201_rIgG_4.raw High KVPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 198 3.76 0.00 1 34 25 3 547.31769 1639.93851 0.42 39.82 3601 3601 MS2 27/56 Linfeng_20130201_rIgG_9.raw High LSQRFPKAEFAEVSK Unambiguous 8 1 P02768 CID 1.0000 0.0000 1 1 432 3.73 0.00 2 10 50 3 579.64948 1736.93387 0.46 34.21 3018 3018 MS2 19/56 Linfeng_20130201_rIgG_2.raw High KVPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 204 3.71 0.00 1 33 49 3 547.31824 1639.94016 1.43 39.05 2755 2755 MS2 25/56 Linfeng_20130204_CTCF_6.raw High VPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 263 3.70 0.00 0 5 50 2 756.42798 1511.84868 3.86 42.73 3152 3152 MS2 19/26 Linfeng_20130204_CTCF_6.raw High KVPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 171 3.69 0.00 1 12 21 2 820.47223 1639.93718 -0.39 38.81 3467 3467 MS2 19/28 Linfeng_20130201_rIgG_8.raw High RHPDYSVVLLLR Unambiguous 8 1 P02768 CID 1.0000 0.0000 1 1 224 3.66 0.00 1 0 37 3 489.95181 1467.84088 -1.52 48.22 4497 4497 MS2 25/44 Linfeng_20130201_rIgG_4.raw High LSQRFPKAEFAEVSK Unambiguous 8 1 P02768 CID 1.0000 0.0000 1 1 447 3.64 0.00 2 21 50 3 579.64874 1736.93167 -0.81 34.65 3050 3050 MS2 22/56 Linfeng_20130201_rIgG_4.raw High YTKKVPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 161 3.57 0.00 2 29 50 3 678.05273 2032.14365 -0.07 35.89 3157 3157 MS2 31/68 Linfeng_20130201_rIgG_8.raw High KVPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 165 3.57 0.00 1 11 50 2 820.47272 1639.93816 0.21 39.09 3610 3610 MS2 18/28 Linfeng_20130201_rIgG_7.raw High KVPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 176 3.53 0.00 1 16 50 2 820.47302 1639.93877 0.58 38.89 3504 3504 MS2 18/28 Linfeng_20130201_rIgG_9.raw High LSQRFPKAEFAEVSK Unambiguous 8 1 P02768 CID 1.0000 0.0000 1 1 443 3.52 0.00 2 23 50 3 579.64899 1736.93241 -0.39 34.64 3111 3111 MS2 22/56 Linfeng_20130201_rIgG_6.raw High RHPDYSVVLLLR Unambiguous 8 1 P02768 CID 1.0000 0.0000 1 1 179 3.52 0.00 1 2 50 3 489.95389 1467.84711 2.72 48.18 3708 3708 MS2 25/44 Linfeng_20130204_CTCF_4.raw High VPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 234 3.52 0.00 0 20 50 2 756.43054 1511.85381 7.25 42.55 3914 3914 MS2 18/26 Linfeng_20130201_rIgG_6.raw High VPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 291 3.52 0.00 0 1 22 2 756.42627 1511.84526 1.59 42.52 3862 3862 MS2 19/26 Linfeng_20130201_rIgG_4.raw High KVPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 209 3.51 0.00 1 19 33 3 547.31720 1639.93705 -0.47 38.97 3055 3055 MS2 23/56 Linfeng_20130204_CTCF_2.raw High KVPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 198 3.51 0.00 1 11 50 3 547.31793 1639.93924 0.87 39.36 3021 3021 MS2 21/56 Linfeng_20130204_CTCF_9.raw High KVPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 207 3.48 0.00 1 9 50 3 547.31714 1639.93686 -0.58 38.78 3493 3493 MS2 26/56 Linfeng_20130201_rIgG_9.raw High LSQRFPKAEFAEVSK Unambiguous 8 1 P02768 CID 1.0000 0.0000 1 1 437 3.47 0.00 2 15 50 3 579.64960 1736.93424 0.67 34.61 3065 3065 MS2 18/56 Linfeng_20130201_rIgG_10.raw High VPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 335 3.46 0.00 0 15 50 2 756.42529 1511.84331 0.30 42.68 3437 3437 MS2 18/26 Linfeng_20130204_CTCF_2.raw High LSQRFPKAEFAEVSK Unambiguous 8 1 P02768 CID 1.0000 0.0000 1 1 447 3.42 0.00 2 12 50 3 579.64868 1736.93149 -0.92 34.64 3078 3078 MS2 21/56 Linfeng_20130201_rIgG_9.raw High VPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 319 3.42 0.00 0 14 8 2 756.42523 1511.84319 0.22 42.32 3881 3881 MS2 20/26 Linfeng_20130201_rIgG_1.raw High RHPDYSVVLLLR Unambiguous 8 1 P02768 CID 1.0000 0.0000 1 1 206 3.40 0.00 1 2 21 3 489.95273 1467.84363 0.35 48.08 4013 4013 MS2 21/44 Linfeng_20130204_CTCF_2.raw High KVPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 206 3.40 0.00 1 4 40 3 547.31677 1639.93576 -1.25 38.81 3487 3487 MS2 27/56 Linfeng_20130201_rIgG_10.raw High VPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 306 3.40 0.00 0 26 50 2 756.42621 1511.84514 1.51 42.44 3864 3864 MS2 18/26 Linfeng_20130201_rIgG_3.raw High RHPDYSVVLLLR Unambiguous 8 1 P02768 CID 1.0000 0.0000 1 1 171 3.40 0.00 1 0 37 3 489.95447 1467.84885 3.91 49.18 3815 3815 MS2 25/44 Linfeng_20130204_CTCF_4.raw High KVPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 174 3.39 0.00 1 0 50 2 820.47308 1639.93889 0.65 38.69 3468 3468 MS2 19/28 Linfeng_20130201_rIgG_2.raw High KVPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 171 3.38 0.00 1 23 50 2 820.47217 1639.93706 -0.46 38.94 3500 3500 MS2 18/28 Linfeng_20130201_rIgG_3.raw High VPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 270 3.38 0.00 0 1 2 2 756.42261 1511.83794 -3.25 42.47 3891 3891 MS2 20/26 Linfeng_20130201_rIgG_8.raw High LSQRFPKAEFAEVSK Unambiguous 8 1 P02768 CID 1.0000 0.0000 1 1 445 3.36 0.00 2 24 50 3 579.64966 1736.93442 0.77 34.30 2632 2632 MS2 19/56 Linfeng_20130204_CTCF_1.raw High VPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 356 3.36 0.00 0 41 18 3 504.62051 1511.84699 2.74 42.48 3893 3893 MS2 21/52 Linfeng_20130201_rIgG_8.raw High VPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 279 3.35 0.00 0 1 9 2 756.42664 1511.84599 2.08 42.58 3885 3885 MS2 19/26 Linfeng_20130201_rIgG_9.raw High VPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 297 3.32 0.00 0 6 20 2 756.42682 1511.84636 2.32 42.59 3881 3881 MS2 19/26 Linfeng_20130201_rIgG_10.raw High LSQRFPKAEFAEVSK Unambiguous 8 1 P02768 CID 1.0000 0.0000 1 1 411 3.31 0.00 2 21 50 3 579.65015 1736.93589 1.61 34.68 3031 3031 MS2 21/56 Linfeng_20130201_rIgG_8.raw High KVPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 174 3.28 0.00 1 8 50 2 820.47357 1639.93987 1.25 38.91 3096 3096 MS2 15/28 Linfeng_20130204_CTCF_1.raw High RHPDYSVVLLLR Unambiguous 8 1 P02768 CID 1.0000 0.0000 1 1 206 3.28 0.00 1 0 43 3 489.95270 1467.84354 0.29 50.07 4248 4248 MS2 20/44 Linfeng_20130204_CTCF_2.raw High KVPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 165 3.23 0.00 1 0 50 2 820.47314 1639.93901 0.73 39.06 3556 3556 MS2 19/28 Linfeng_20130201_rIgG_6.raw High RHPDYSVVLLLR Unambiguous 8 1 P02768 CID 1.0000 0.0000 1 1 199 3.22 0.00 1 0 50 3 489.95081 1467.83786 -3.58 52.25 4136 4136 MS2 24/44 Linfeng_20130204_CTCF_4.raw High KVPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 141 3.22 0.00 1 14 40 2 820.47424 1639.94121 2.07 39.20 2774 2774 MS2 18/28 Linfeng_20130204_CTCF_6.raw High RHPDYSVVLLLR Unambiguous 8 1 P02768 CID 1.0000 0.0000 1 1 168 3.20 0.00 1 0 24 3 489.95416 1467.84793 3.29 48.08 3698 3698 MS2 22/44 Linfeng_20130204_CTCF_3.raw High LSQRFPKAEFAEVSK Unambiguous 8 1 P02768 CID 1.0000 0.0000 1 1 433 3.19 0.00 2 7 50 3 579.64923 1736.93314 0.03 34.63 3161 3161 MS2 23/56 Linfeng_20130201_rIgG_7.raw High RHPDYSVVLLLR Unambiguous 8 1 P02768 CID 1.0000 0.0000 1 1 227 3.19 0.00 1 13 19 3 489.95197 1467.84134 -1.20 47.57 4446 4446 MS2 25/44 Linfeng_20130201_rIgG_5.raw High VPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 308 3.18 0.00 0 4 50 2 756.42596 1511.84465 1.19 42.34 3842 3842 MS2 20/26 Linfeng_20130201_rIgG_2.raw High RHPDYSVVLLLR Unambiguous 8 1 P02768 CID 1.0000 0.0000 1 1 191 3.17 0.00 1 17 40 2 734.42529 1467.84331 0.13 48.52 3744 3744 MS2 17/22 Linfeng_20130204_CTCF_4.raw High KVPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 198 3.05 0.00 1 25 50 3 547.31769 1639.93851 0.42 39.23 2788 2788 MS2 23/56 Linfeng_20130204_CTCF_3.raw High KVPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 198 3.02 0.00 1 15 41 3 547.31775 1639.93869 0.53 39.28 2987 2987 MS2 24/56 Linfeng_20130204_CTCF_7.raw High KVPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 196 3.01 0.00 1 16 50 3 547.31799 1639.93943 0.98 39.57 2989 2989 MS2 19/56 Linfeng_20130204_CTCF_10.raw High RHPDYSVVLLLR Unambiguous 8 1 P02768 CID 1.0000 0.0000 1 1 209 3.01 0.00 1 0 43 3 489.95358 1467.84620 2.10 49.17 3814 3814 MS2 21/44 Linfeng_20130204_CTCF_3.raw High VPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 291 3.00 0.00 0 3 50 2 756.42633 1511.84538 1.68 42.49 3465 3465 MS2 19/26 Linfeng_20130204_CTCF_1.raw High KVPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 181 2.97 0.00 1 25 50 2 820.47241 1639.93755 -0.17 38.93 3501 3501 MS2 19/28 Linfeng_20130201_rIgG_10.raw High KVPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 198 2.91 0.00 1 34 50 3 547.31812 1639.93979 1.20 39.61 3562 3562 MS2 23/56 Linfeng_20130201_rIgG_2.raw High RHPDYSVVLLLR Unambiguous 8 1 P02768 CID 1.0000 0.0000 1 1 208 2.87 0.00 1 3 50 3 489.95239 1467.84262 -0.33 59.10 4946 4946 MS2 18/44 Linfeng_20130204_CTCF_3.raw High RHPDYSVVLLLR Unambiguous 8 1 P02768 CID 1.0000 0.0000 1 1 207 2.86 0.00 1 12 50 3 489.95248 1467.84290 -0.14 59.24 4945 4945 MS2 19/44 Linfeng_20130204_CTCF_4.raw High LSQRFPKAEFAEVSK Unambiguous 8 1 P02768 CID 1.0000 0.0000 1 1 399 2.85 0.00 2 14 50 3 579.65143 1736.93973 3.83 34.73 2631 2631 MS2 17/56 Linfeng_20130204_CTCF_2.raw High VPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 260 2.83 0.00 0 13 50 2 756.42816 1511.84905 4.10 42.71 3984 3984 MS2 20/26 Linfeng_20130201_rIgG_7.raw High LSQRFPKAEFAEVSK Unambiguous 8 1 P02768 CID 1.0000 0.0000 1 1 433 2.82 0.00 2 9 50 3 579.64917 1736.93296 -0.07 34.58 3060 3060 MS2 20/56 Linfeng_20130201_rIgG_3.raw High KVPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 201 2.80 0.00 1 13 50 3 547.31738 1639.93760 -0.14 38.64 3067 3067 MS2 21/56 Linfeng_20130204_CTCF_1.raw High VPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 360 2.59 0.00 0 32 50 3 504.61890 1511.84214 -0.47 42.35 3884 3884 MS2 20/52 Linfeng_20130201_rIgG_1.raw High VPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 347 2.57 0.00 0 35 50 3 504.61972 1511.84461 1.16 42.65 3892 3892 MS2 19/52 Linfeng_20130201_rIgG_9.raw High LVNEVTEFAK Unambiguous 4 1 P02768 CID 1.0000 0.0000 1 1 500 2.53 0.00 0 18 50 2 575.31195 1149.61662 1.35 38.59 3062 3062 MS2 14/18 Linfeng_20130204_CTCF_1.raw High LVNEVTEFAK Unambiguous 4 1 P02768 CID 1.0000 0.0000 1 1 456 2.52 0.00 0 9 50 2 575.31091 1149.61455 -0.45 38.84 3533 3533 MS2 14/18 Linfeng_20130201_rIgG_6.raw Medium RHPDYSVVLLLR Unambiguous 8 1 P02768 CID 1.0000 0.0000 1 1 233 2.48 0.00 1 0 50 3 489.95142 1467.83969 -2.33 52.17 4458 4458 MS2 22/44 Linfeng_20130204_CTCF_2.raw High LVNEVTEFAK Unambiguous 4 1 P02768 CID 1.0000 0.0000 1 1 534 2.30 0.00 0 14 50 2 575.31189 1149.61650 1.25 38.09 3405 3405 MS2 14/18 Linfeng_20130201_rIgG_2.raw Medium KVPQVSTPTLVEVSR Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 182 2.29 0.00 1 39 50 3 547.31885 1639.94199 2.54 39.34 2996 2996 MS2 21/56 Linfeng_20130204_CTCF_8.raw High QTALVELVK Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 401 2.20 0.00 0 20 17 2 500.80652 1000.60576 1.99 42.06 3075 3075 MS2 14/16 Linfeng_20130204_CTCF_4.raw High QTALVELVK Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 281 2.15 0.00 0 19 50 2 500.80530 1000.60332 -0.45 41.28 3734 3734 MS2 12/16 Linfeng_20130201_rIgG_2.raw High QTALVELVK Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 227 2.06 0.00 0 23 50 2 500.80585 1000.60442 0.65 41.60 3777 3777 MS2 13/16 Linfeng_20130201_rIgG_3.raw High LVNEVTEFAK Unambiguous 4 1 P02768 CID 1.0000 0.0000 1 1 533 2.05 0.00 0 8 50 2 575.31177 1149.61626 1.03 38.75 3463 3463 MS2 14/18 Linfeng_20130201_rIgG_4.raw High QTALVELVK Unambiguous 9 1 P02768 CID 1.0000 0.0000 1 1 280 2.05 0.00 0 25 50 2 500.80487 1000.60246 -1.31 42.75 3148 3148 MS2 14/16 Linfeng_20130204_CTCF_3.raw Q15323 "Keratin, type I cuticular Ha1 OS=Homo sapiens GN=KRT31 PE=2 SV=3 - [K1H1_HUMAN]" 10.10 1 3 4 8 22.10 10.10 4 8 416 47.2 4.88 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High LNVEVDAAPTVDLNR Unambiguous 1 1 Q15323 CID 1.0000 0.0000 1 1 462 3.34 0.00 0 10 50 2 813.42706 1625.84685 -1.58 43.68 4087 4087 MS2 20/28 Linfeng_20130201_rIgG_7.raw High LNVEVDAAPTVDLNR Unambiguous 1 1 Q15323 CID 1.0000 0.0000 1 1 462 3.32 0.00 0 27 50 2 813.42810 1625.84892 -0.30 43.62 3989 3989 MS2 19/28 Linfeng_20130201_rIgG_10.raw High LNVEVDAAPTVDLNR Unambiguous 1 1 Q15323 CID 1.0000 0.0000 1 1 461 3.24 0.00 0 19 50 2 813.42896 1625.85063 0.75 43.79 4011 4011 MS2 19/28 Linfeng_20130201_rIgG_9.raw High LNVEVDAAPTVDLNR Unambiguous 1 1 Q15323 CID 1.0000 0.0000 1 1 457 3.17 0.00 0 12 50 2 813.42920 1625.85112 1.05 43.72 4036 4036 MS2 18/28 Linfeng_20130201_rIgG_6.raw High QLVESDINGLR Unambiguous 1 1 Q15323 CID 1.0000 0.0000 1 1 501 2.42 0.00 0 17 50 2 622.33484 1243.66240 -1.41 37.85 3389 3389 MS2 14/20 Linfeng_20130201_rIgG_10.raw High LAADDFR Unambiguous 14 5 P13645;P02533;P08779;Q04695;Q15323 CID 1.0000 0.0000 1 1 387 2.25 0.00 0 5 50 2 404.20294 807.39861 -1.22 28.82 2487 2487 MS2 11/12 Linfeng_20130201_rIgG_1.raw High ILDELTLcK Unambiguous 1 1 Q15323 C8(Carbamidomethyl) CID 1.0000 0.0000 1 1 572 2.19 0.00 0 20 50 2 552.80139 1104.59551 -1.33 44.17 4049 4049 MS2 14/16 Linfeng_20130201_rIgG_10.raw High QLVESDINGLR Unambiguous 1 1 Q15323 CID 1.0000 0.0000 1 1 517 2.17 0.00 0 15 50 2 622.33466 1243.66203 -1.70 38.05 3418 3418 MS2 12/20 Linfeng_20130201_rIgG_9.raw Q14683 Structural maintenance of chromosomes protein 1A OS=Homo sapiens GN=SMC1A PE=1 SV=2 - [SMC1A_HUMAN] 9.89 4 10 10 11 31.82 9.89 10 11 1233 143.1 7.64 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High AFVSmVYSEEGAEDR Unambiguous 4 1 Q14683 M5(Oxidation) CID 1.0000 0.0000 1 1 102 3.54 0.00 0 0 50 2 853.37219 1705.73711 -0.22 36.91 2846 2846 MS2 22/28 Linfeng_20130204_CTCF_2.raw High AFVSMVYSEEGAEDR Unambiguous 4 1 Q14683 CID 1.0000 0.0000 1 1 144 3.38 0.00 0 0 50 2 845.37665 1689.74602 2.05 44.30 3607 3607 MS2 22/28 Linfeng_20130204_CTCF_2.raw High DKFQETSDEFEAAR Unambiguous 1 1 Q14683 CID 1.0000 0.0000 1 1 117 3.28 0.00 1 6 50 3 558.25226 1672.74222 -1.66 33.36 2497 2497 MS2 23/52 Linfeng_20130204_CTCF_2.raw High AESLIGVYPEQGDcVISK Unambiguous 1 1 Q14683 C14(Carbamidomethyl) CID 1.0000 0.0000 1 1 370 3.17 0.00 0 0 50 2 982.98596 1964.96465 0.61 46.64 3855 3855 MS2 17/34 Linfeng_20130204_CTCF_2.raw High IEKLEEYITTSK Unambiguous 2 1 Q14683 CID 1.0000 0.0000 1 1 505 2.90 0.00 1 19 50 3 485.26352 1453.77600 -1.72 38.04 2960 2960 MS2 17/44 Linfeng_20130204_CTCF_2.raw High VVQLHEYSEELEK Unambiguous 4 1 Q14683 CID 1.0000 0.0000 1 1 503 2.78 0.00 0 13 50 3 534.93811 1602.79978 -0.78 35.15 2672 2672 MS2 19/48 Linfeng_20130204_CTCF_2.raw High TVALDGTLFQK Unambiguous 2 1 Q14683 CID 1.0000 0.0000 1 1 466 2.78 0.00 0 31 50 2 596.83429 1192.66130 3.38 46.51 3841 3841 MS2 15/20 Linfeng_20130204_CTCF_2.raw High TALFEEISR Unambiguous 2 1 Q14683 CID 1.0000 0.0000 1 1 444 2.63 0.00 0 28 50 2 533.28235 1065.55742 -0.12 44.62 3642 3642 MS2 15/16 Linfeng_20130204_CTCF_2.raw High SKLESELANFGPR Unambiguous 1 1 Q14683 CID 1.0000 0.0000 1 1 628 2.59 0.00 1 20 50 3 483.25589 1447.75312 -0.64 44.02 3577 3577 MS2 18/48 Linfeng_20130204_CTCF_2.raw High LGIQLDFEK Unambiguous 1 1 Q14683 CID 1.0000 0.0000 1 1 612 2.48 0.00 0 50 50 2 531.79724 1062.58721 3.92 50.20 4260 4260 MS2 13/16 Linfeng_20130204_CTCF_2.raw High LIEIENFK Unambiguous 3 1 Q14683 CID 1.0000 0.0000 1 1 382 2.29 0.00 0 17 50 2 503.28430 1005.56133 -0.24 44.77 3657 3657 MS2 12/14 Linfeng_20130204_CTCF_2.raw G3V1I6 ATPase family AAA domain-containing protein 3A OS=Homo sapiens GN=ATAD3A PE=4 SV=1 - [G3V1I6_HUMAN] 9.66 3 3 3 3 8.92 9.66 3 3 0.00 507 57.9 9.25 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High LKEYEAAVEQLK Unambiguous 3 1 G3V1I6 CID 1.0000 0.0000 1 1 485 3.65 0.00 1 15 50 3 474.26031 1420.76639 -1.33 35.80 3165 3165 MS2 24/44 Linfeng_20130201_rIgG_4.raw High LALHSGmDYAImTGGDVAPmGR Unambiguous 3 1 G3V1I6 M7(Oxidation); M12(Oxidation); M20(Oxidation) CID 1.0000 0.0000 1 1 300 2.95 0.00 0 14 50 3 771.02209 2311.05173 0.02 36.04 3199 3199 MS2 21/84 Linfeng_20130201_rIgG_2.raw Medium INEmVHFDLPGQEER Unambiguous 3 1 G3V1I6 M4(Oxidation) CID 1.0000 0.0000 1 1 338 2.33 0.00 0 19 49 3 610.62140 1829.84964 0.48 41.94 3802 3802 MS2 23/56 Linfeng_20130201_rIgG_4.raw Q96PK6 RNA-binding protein 14 OS=Homo sapiens GN=RBM14 PE=1 SV=2 - [RBM14_HUMAN] 9.57 1 4 4 4 0.00 14.24 9.57 4 4 669 69.4 9.67 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High IFVGNVSAAcTSQELR Unambiguous 1 1 Q96PK6 C10(Carbamidomethyl) CID 1.0000 0.0000 1 1 424 4.69 0.00 0 0 50 2 876.44281 1751.87834 2.15 41.68 3036 3036 MS2 27/30 Linfeng_20130204_CTCF_4.raw High TQSSASLAASYAAQQHPQAAASYR Unambiguous 1 1 Q96PK6 CID 1.0000 0.0000 1 1 461 4.15 0.00 0 0 50 3 822.40027 2465.18625 2.35 34.22 2282 2282 MS2 22/92 Linfeng_20130204_CTCF_4.raw High LSESQLSFR Unambiguous 1 1 Q96PK6 CID 1.0000 0.0000 1 1 376 2.72 0.00 0 11 50 2 533.78003 1066.55278 -0.01 37.12 2570 2570 MS2 15/16 Linfeng_20130204_CTCF_4.raw High ASYVAPLTAQPATYR Unambiguous 1 1 Q96PK6 CID 1.0000 0.0000 1 1 484 2.69 0.00 0 10 50 2 804.92560 1608.84392 3.63 39.61 2824 2824 MS2 19/28 Linfeng_20130204_CTCF_4.raw Q9H0A0 N-acetyltransferase 10 OS=Homo sapiens GN=NAT10 PE=1 SV=2 - [NAT10_HUMAN] 9.46 4 8 8 8 22.23 9.46 8 8 1025 115.7 8.27 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High LDYLGVSYGLTPR Unambiguous 3 1 Q9H0A0 CID 1.0000 0.0000 1 1 416 3.54 0.00 0 48 50 2 727.39429 1453.78130 8.73 51.68 4079 4079 MS2 18/24 Linfeng_20130204_CTCF_3.raw High GDDEEWNEVLNK Unambiguous 3 1 Q9H0A0 CID 1.0000 0.0000 1 1 142 3.31 0.00 0 6 50 2 724.31995 1447.63262 -0.72 42.77 3150 3150 MS2 17/22 Linfeng_20130204_CTCF_3.raw High SLFVVVGDR Unambiguous 2 1 Q9H0A0 CID 1.0000 0.0000 1 1 299 2.75 0.00 0 0 50 2 496.28244 991.55760 0.45 46.38 3519 3519 MS2 14/16 Linfeng_20130204_CTCF_3.raw High AGPNASIISLK Unambiguous 3 1 Q9H0A0 CID 1.0000 0.0000 1 1 337 2.74 0.00 0 34 50 2 535.81580 1070.62432 3.57 39.35 2800 2800 MS2 15/20 Linfeng_20130204_CTCF_3.raw High FILSLAScK Unambiguous 3 1 Q9H0A0 C8(Carbamidomethyl) CID 1.0000 0.0000 1 1 430 2.68 0.00 0 12 50 2 519.78729 1038.56731 1.96 48.37 3727 3727 MS2 14/16 Linfeng_20130204_CTCF_3.raw High ESLQDTQPVGVLVDccK Unambiguous 3 1 Q9H0A0 C15(Carbamidomethyl); C16(Carbamidomethyl) CID 1.0000 0.0000 1 1 291 2.48 0.00 0 0 50 2 974.46094 1947.91460 -0.27 44.30 3308 3308 MS2 19/32 Linfeng_20130204_CTCF_3.raw Medium LmALYVASHYK Unambiguous 3 1 Q9H0A0 M2(Oxidation) CID 1.0000 0.0000 1 1 390 2.48 0.00 0 11 50 3 437.89706 1311.67664 0.03 36.69 2530 2530 MS2 18/40 Linfeng_20130204_CTCF_3.raw Medium IAVHPDYQGMGYGSR Unambiguous 3 1 Q9H0A0 CID 1.0000 0.0000 1 1 306 2.25 0.00 0 16 50 3 550.92694 1650.76627 -1.87 33.07 2175 2175 MS2 15/56 Linfeng_20130204_CTCF_3.raw Q12906 Interleukin enhancer-binding factor 3 OS=Homo sapiens GN=ILF3 PE=1 SV=3 - [ILF3_HUMAN] 9.40 9 6 6 8 6.98 4.70 3 3 13.56 8.39 5 5 894 95.3 8.76 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High VLQDMGLPTGAEGR Unambiguous 9 1 Q12906 CID 1.0000 0.0000 1 1 425 3.28 0.00 0 0 50 2 722.36609 1443.72490 -0.85 40.20 2887 2887 MS2 19/26 Linfeng_20130204_CTCF_3.raw High GYNHGQGSYSYSNSYNSPGGGGGSDYNYESK Unambiguous 2 1 Q12906 CID 1.0000 0.0000 1 1 9 2.96 0.00 0 0 50 3 1085.10986 3253.31504 4.55 31.10 1976 1976 MS2 24/120 Linfeng_20130204_CTCF_3.raw High AVSDWIDEQEK Unambiguous 9 1 Q12906 CID 1.0000 0.0000 1 1 328 2.83 0.00 0 21 50 2 660.31097 1319.61467 2.44 39.56 2822 2822 MS2 16/20 Linfeng_20130204_CTCF_3.raw High VLQDMGLPTGAEGR Unambiguous 9 1 Q12906 CID 1.0000 0.0000 1 1 456 2.62 0.00 0 27 50 2 722.36615 1443.72502 -0.77 40.14 3625 3625 MS2 16/26 Linfeng_20130201_rIgG_3.raw High VPTWGPLR Unambiguous 8 1 Q12906 CID 1.0000 0.0000 1 1 306 2.39 0.00 0 39 50 2 463.26624 925.52519 -0.29 43.47 3221 3221 MS2 12/14 Linfeng_20130204_CTCF_3.raw Medium RFVMEVEVDGQKFQGAGSNK Unambiguous 8 1 Q12906 CID 1.0000 0.0000 1 1 510 2.29 0.00 2 18 50 3 742.70172 2226.09061 -3.01 42.67 3876 3876 MS2 20/76 Linfeng_20130201_rIgG_2.raw High FVMEVEVDGQK Unambiguous 9 1 Q12906 CID 1.0000 0.0000 1 1 447 2.10 0.00 0 23 50 2 640.81488 1280.62248 2.57 41.75 3046 3046 MS2 17/20 Linfeng_20130204_CTCF_3.raw High VPTWGPLR Unambiguous 8 1 Q12906 CID 1.0000 0.0000 1 1 315 2.07 0.00 0 30 50 2 463.26575 925.52422 -1.34 43.22 3944 3944 MS2 12/14 Linfeng_20130201_rIgG_3.raw Q08554-2 Isoform 1B of Desmocollin-1 OS=Homo sapiens GN=DSC1 - [DSC1_HUMAN] 9.40 2 4 4 5 16.34 9.40 4 5 840 93.8 5.53 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High SGTSVGKVTATDLDEPDTLHTR Unambiguous 2 1 Q08554-2 CID 1.0000 0.0000 1 1 522 4.03 0.00 1 17 50 3 767.38617 2300.14396 3.21 32.65 2103 2103 MS2 21/84 Linfeng_20130204_CTCF_6.raw High HFSIHPDTGVITTTTPFLDREK Unambiguous 2 1 Q08554-2 CID 1.0000 0.0000 1 1 448 3.95 0.00 1 21 50 4 628.82910 2512.29458 4.54 45.44 3443 3443 MS2 28/126 Linfeng_20130204_CTCF_6.raw High QVILQVGVINEAQFSK Unambiguous 2 1 Q08554-2 CID 1.0000 0.0000 1 1 269 3.19 0.00 0 0 50 2 886.99896 1772.99065 0.03 57.96 4852 4852 MS2 16/30 Linfeng_20130204_CTCF_6.raw Medium SGTSVGKVTATDLDEPDTLHTR Unambiguous 2 1 Q08554-2 CID 1.0000 0.0000 1 1 527 2.62 0.00 1 11 50 4 575.79089 2300.14174 2.25 32.61 2099 2099 MS2 31/126 Linfeng_20130204_CTCF_6.raw High ILEDGSIYTTHDLILSSER Unambiguous 2 1 Q08554-2 CID 1.0000 0.0000 1 1 577 2.56 0.00 0 13 50 3 721.37207 2162.10166 1.86 48.54 3767 3767 MS2 20/72 Linfeng_20130204_CTCF_6.raw H9KV51 "Keratin, type II cytoskeletal 72 OS=Homo sapiens GN=KRT72 PE=4 SV=1 - [H9KV51_HUMAN]" 9.38 8 1 4 57 112.81 9.38 4 35 70.68 7.68 3 22 469 51.1 6.46 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High FLEQQNQVLETK Unambiguous 8 1 H9KV51 CID 1.0000 0.0000 1 1 546 4.74 0.00 0 30 31 2 738.89093 1476.77458 3.55 35.67 3168 3168 MS2 20/22 Linfeng_20130201_rIgG_3.raw High FLEQQNQVLETK Unambiguous 8 1 H9KV51 CID 1.0000 0.0000 1 1 543 4.67 0.00 0 33 49 2 738.89087 1476.77446 3.47 35.29 3146 3146 MS2 20/22 Linfeng_20130201_rIgG_1.raw High FLEQQNQVLETK Unambiguous 8 1 H9KV51 CID 1.0000 0.0000 1 1 550 4.59 0.00 0 37 50 2 738.89252 1476.77776 5.70 35.54 3139 3139 MS2 20/22 Linfeng_20130201_rIgG_4.raw High FLEQQNQVLETK Unambiguous 8 1 H9KV51 CID 1.0000 0.0000 1 1 582 4.53 0.00 0 22 44 2 738.88989 1476.77251 2.14 35.57 2758 2758 MS2 20/22 Linfeng_20130204_CTCF_1.raw High FLEQQNQVLETK Unambiguous 8 1 H9KV51 CID 1.0000 0.0000 1 1 593 4.45 0.00 0 39 50 2 738.89227 1476.77727 5.37 35.32 3127 3127 MS2 20/22 Linfeng_20130201_rIgG_2.raw High FLEQQNQVLETK Unambiguous 8 1 H9KV51 CID 1.0000 0.0000 1 1 595 4.20 0.00 0 32 50 2 738.89221 1476.77715 5.29 35.68 2409 2409 MS2 20/22 Linfeng_20130204_CTCF_6.raw High FLEQQNQVLETK Unambiguous 8 1 H9KV51 CID 1.0000 0.0000 1 1 566 4.13 0.00 0 25 50 2 738.88989 1476.77251 2.14 35.87 3233 3233 MS2 20/22 Linfeng_20130201_rIgG_6.raw High FLEQQNQVLETK Unambiguous 8 1 H9KV51 CID 1.0000 0.0000 1 1 554 4.10 0.00 0 29 50 2 738.89087 1476.77446 3.47 35.43 2957 2957 MS2 20/22 Linfeng_20130201_rIgG_5.raw High FLEQQNQVLETK Unambiguous 8 1 H9KV51 CID 1.0000 0.0000 1 1 582 4.09 0.00 0 36 50 2 738.89038 1476.77349 2.81 35.71 3185 3185 MS2 19/22 Linfeng_20130201_rIgG_9.raw High FLEQQNQVLETK Unambiguous 8 1 H9KV51 CID 1.0000 0.0000 1 1 550 4.08 0.00 0 42 50 2 738.89380 1476.78032 7.43 35.97 2454 2454 MS2 20/22 Linfeng_20130204_CTCF_4.raw High FLEQQNQVLETK Unambiguous 8 1 H9KV51 CID 1.0000 0.0000 1 1 561 4.06 0.00 0 8 50 2 738.89136 1476.77544 4.13 36.15 2694 2694 MS2 18/22 Linfeng_20130204_CTCF_9.raw High FLEQQNQVLETK Unambiguous 8 1 H9KV51 CID 1.0000 0.0000 1 1 580 4.05 0.00 0 32 50 2 738.88934 1476.77141 1.40 35.55 3158 3158 MS2 20/22 Linfeng_20130201_rIgG_10.raw High FLEQQNQVLETK Unambiguous 8 1 H9KV51 CID 1.0000 0.0000 1 1 554 4.04 0.00 0 31 50 2 738.89099 1476.77471 3.63 35.56 3253 3253 MS2 19/22 Linfeng_20130201_rIgG_7.raw High FLEQQNQVLETK Unambiguous 8 1 H9KV51 CID 1.0000 0.0000 1 1 583 3.99 0.00 0 24 50 2 738.88995 1476.77263 2.23 36.07 2469 2469 MS2 19/22 Linfeng_20130204_CTCF_3.raw High FLEQQNQVLETK Unambiguous 8 1 H9KV51 CID 1.0000 0.0000 1 1 561 3.98 0.00 0 18 50 2 738.89154 1476.77580 4.38 36.26 2649 2649 MS2 18/22 Linfeng_20130204_CTCF_10.raw High FLEQQNQVLETK Unambiguous 8 1 H9KV51 CID 1.0000 0.0000 1 1 549 3.96 0.00 0 33 50 2 738.89526 1476.78325 9.42 37.34 3336 3336 MS2 20/22 Linfeng_20130201_rIgG_3.raw High FLEQQNQVLETK Unambiguous 8 1 H9KV51 CID 1.0000 0.0000 1 1 568 3.82 0.00 0 31 50 2 738.88879 1476.77031 0.66 35.71 3138 3138 MS2 20/22 Linfeng_20130201_rIgG_8.raw High FLEQQNQVLETK Unambiguous 8 1 H9KV51 CID 1.0000 0.0000 1 1 564 3.67 0.00 0 31 50 2 738.89063 1476.77397 3.14 36.90 2892 2892 MS2 20/22 Linfeng_20130204_CTCF_1.raw High FLEQQNQVLETK Unambiguous 8 1 H9KV51 CID 1.0000 0.0000 1 1 587 3.66 0.00 0 24 50 2 738.88904 1476.77080 0.99 35.69 2725 2725 MS2 20/22 Linfeng_20130204_CTCF_2.raw High FLEQQNQVLETK Unambiguous 8 1 H9KV51 CID 1.0000 0.0000 1 1 600 3.41 0.00 0 38 50 2 738.89221 1476.77715 5.29 35.89 2645 2645 MS2 18/22 Linfeng_20130204_CTCF_7.raw High FLEQQNQVLETK Unambiguous 8 1 H9KV51 CID 1.0000 0.0000 1 1 585 3.15 0.00 0 0 50 2 738.88928 1476.77129 1.32 36.99 3285 3285 MS2 17/22 Linfeng_20130201_rIgG_4.raw High FLEQQNQVLETK Unambiguous 8 1 H9KV51 CID 1.0000 0.0000 1 1 585 3.15 0.00 0 21 50 2 738.88910 1476.77092 1.07 36.82 3277 3277 MS2 18/22 Linfeng_20130201_rIgG_2.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 368 3.14 0.00 1 8 3 2 541.80359 1082.59990 0.50 38.24 3272 3272 MS2 15/16 Linfeng_20130201_rIgG_5.raw High DVDAAYMNKVELQAK Unambiguous 8 4 P02538;P04259;P48668;H9KV51 CID 1.0000 0.0000 1 1 513 3.13 0.00 1 5 37 3 565.61987 1694.84507 1.88 38.47 2694 2694 MS2 20/56 Linfeng_20130204_CTCF_6.raw High FLEQQNQVLETK Unambiguous 8 1 H9KV51 CID 1.0000 0.0000 1 1 579 3.09 0.00 0 23 50 2 738.88940 1476.77153 1.48 36.65 3283 3283 MS2 19/22 Linfeng_20130201_rIgG_1.raw High FLEQQNQVLETK Unambiguous 8 1 H9KV51 CID 1.0000 0.0000 1 1 589 3.07 0.00 0 10 50 2 738.89038 1476.77349 2.81 36.95 3126 3126 MS2 19/22 Linfeng_20130201_rIgG_5.raw High FLEQQNQVLETK Unambiguous 8 1 H9KV51 CID 1.0000 0.0000 1 1 578 3.07 0.00 0 9 50 2 738.88922 1476.77117 1.24 37.22 2564 2564 MS2 18/22 Linfeng_20130204_CTCF_6.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 311 3.05 0.00 1 21 50 2 541.80347 1082.59966 0.27 38.69 3473 3473 MS2 15/16 Linfeng_20130201_rIgG_3.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 343 3.04 0.00 1 56 50 2 541.80585 1082.60442 4.67 39.54 2816 2816 MS2 13/16 Linfeng_20130204_CTCF_4.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 366 3.02 0.00 1 17 36 2 541.80377 1082.60027 0.84 38.78 3468 3468 MS2 15/16 Linfeng_20130201_rIgG_4.raw High FLEQQNQVLETK Unambiguous 8 1 H9KV51 CID 1.0000 0.0000 1 1 585 2.99 0.00 0 13 50 2 738.88959 1476.77190 1.73 37.15 3318 3318 MS2 17/22 Linfeng_20130201_rIgG_10.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 352 2.92 0.00 1 19 50 2 541.80304 1082.59880 -0.52 38.29 3426 3426 MS2 15/16 Linfeng_20130201_rIgG_2.raw High FLEQQNQVLETK Unambiguous 8 1 H9KV51 CID 1.0000 0.0000 1 1 600 2.91 0.00 0 28 50 2 738.88849 1476.76970 0.24 37.29 3376 3376 MS2 17/22 Linfeng_20130201_rIgG_6.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 330 2.90 0.00 1 11 50 2 541.80341 1082.59953 0.16 38.46 3467 3467 MS2 15/16 Linfeng_20130201_rIgG_1.raw High FLEQQNQVLETK Unambiguous 8 1 H9KV51 CID 1.0000 0.0000 1 1 617 2.85 0.00 0 20 50 2 738.88867 1476.77007 0.49 37.19 3332 3332 MS2 16/22 Linfeng_20130201_rIgG_9.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 325 2.81 0.00 1 10 50 2 541.80310 1082.59892 -0.40 38.88 3045 3045 MS2 15/16 Linfeng_20130204_CTCF_2.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 353 2.79 0.00 1 35 16 2 541.80286 1082.59844 -0.85 38.84 3353 3353 MS2 15/16 Linfeng_20130201_rIgG_5.raw High FLEQQNQVLETK Unambiguous 8 1 H9KV51 CID 1.0000 0.0000 1 1 569 2.78 0.00 0 18 50 2 738.88770 1476.76811 -0.83 37.40 3353 3353 MS2 17/22 Linfeng_20130201_rIgG_9.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 370 2.76 0.00 1 11 17 2 541.80353 1082.59978 0.39 39.08 2759 2759 MS2 15/16 Linfeng_20130204_CTCF_6.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 339 2.71 0.00 1 0 17 2 541.80212 1082.59697 -2.21 38.74 3340 3340 MS2 15/16 Linfeng_20130201_rIgG_5.raw High FLEQQNQVLETK Unambiguous 8 1 H9KV51 CID 1.0000 0.0000 1 1 558 2.71 0.00 0 41 50 2 738.89136 1476.77544 4.13 37.45 2607 2607 MS2 13/22 Linfeng_20130204_CTCF_3.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 370 2.71 0.00 1 33 50 2 541.80371 1082.60015 0.72 39.05 3606 3606 MS2 14/16 Linfeng_20130201_rIgG_7.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 358 2.68 0.00 1 50 50 2 541.80542 1082.60356 3.88 39.43 3002 3002 MS2 15/16 Linfeng_20130204_CTCF_7.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 367 2.67 0.00 1 35 50 2 541.80475 1082.60222 2.64 39.63 3049 3049 MS2 15/16 Linfeng_20130204_CTCF_9.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 353 2.62 0.00 1 15 15 2 541.80292 1082.59856 -0.74 38.71 3336 3336 MS2 15/16 Linfeng_20130201_rIgG_5.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 367 2.61 0.00 1 28 50 2 541.80426 1082.60124 1.74 39.63 2995 2995 MS2 15/16 Linfeng_20130204_CTCF_10.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 356 2.58 0.00 1 19 47 2 541.80518 1082.60307 3.43 40.09 2869 2869 MS2 15/16 Linfeng_20130204_CTCF_6.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 325 2.54 0.00 1 26 41 2 541.80322 1082.59917 -0.18 38.91 3499 3499 MS2 15/16 Linfeng_20130201_rIgG_10.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 325 2.49 0.00 1 33 50 2 541.80322 1082.59917 -0.18 39.27 2988 2988 MS2 15/16 Linfeng_20130204_CTCF_8.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 309 2.37 0.00 1 17 50 2 541.80347 1082.59966 0.27 39.60 3561 3561 MS2 12/16 Linfeng_20130201_rIgG_2.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 367 2.36 0.00 1 47 29 2 541.80359 1082.59990 0.50 39.12 3388 3388 MS2 13/16 Linfeng_20130201_rIgG_5.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 344 2.34 0.00 1 29 50 2 541.80499 1082.60271 3.09 39.44 2810 2810 MS2 14/16 Linfeng_20130204_CTCF_3.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 367 2.33 0.00 1 53 50 2 541.80389 1082.60051 1.06 39.10 3561 3561 MS2 14/16 Linfeng_20130201_rIgG_6.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 354 2.27 0.00 1 19 50 2 541.80298 1082.59868 -0.63 39.96 3606 3606 MS2 12/16 Linfeng_20130201_rIgG_3.raw Medium DVDAAYMNKVELQAK Unambiguous 8 4 P02538;P04259;P48668;H9KV51 CID 1.0000 0.0000 1 1 502 2.26 0.00 1 16 50 3 565.61823 1694.84012 -1.04 38.60 3509 3509 MS2 19/56 Linfeng_20130201_rIgG_6.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 367 2.21 0.00 1 55 50 2 541.80396 1082.60063 1.18 38.89 3093 3093 MS2 13/16 Linfeng_20130204_CTCF_1.raw High AQEREQIK Unambiguous 11 2 P35908;H9KV51 CID 1.0000 0.0000 1 1 452 2.17 0.00 1 6 50 2 501.27246 1001.53765 0.16 15.72 825 825 MS2 12/14 Linfeng_20130201_rIgG_3.raw F5GZI1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 OS=Homo sapiens GN=SMARCA5 PE=4 SV=1 - [F5GZI1_HUMAN] 9.25 6 8 8 8 21.74 9.25 8 8 995 116.7 8.34 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High ESEITDEDIDGILER Unambiguous 2 1 F5GZI1 CID 1.0000 0.0000 1 1 266 3.94 0.00 0 6 47 2 867.40613 1733.80498 -1.55 50.41 3949 3949 MS2 23/28 Linfeng_20130204_CTCF_3.raw High IDEAESLNDEELEEK Unambiguous 2 1 F5GZI1 CID 1.0000 0.0000 1 1 188 3.53 0.00 0 3 50 2 881.89740 1762.78752 0.52 35.29 2392 2392 MS2 19/28 Linfeng_20130204_CTCF_3.raw High LLTQGFTNWNK Unambiguous 2 1 F5GZI1 CID 1.0000 0.0000 1 1 489 2.75 0.00 0 13 37 2 661.34857 1321.68987 -0.07 46.77 3560 3560 MS2 15/20 Linfeng_20130204_CTCF_3.raw High LGFDKENVYDELR Unambiguous 2 1 F5GZI1 CID 1.0000 0.0000 1 1 483 2.70 0.00 1 23 50 3 533.26843 1597.79074 3.14 44.14 3291 3291 MS2 17/48 Linfeng_20130204_CTCF_3.raw Medium IAFTEWIEPPKR Unambiguous 2 1 F5GZI1 CID 1.0000 0.0000 1 1 495 2.36 0.00 1 0 50 3 496.27298 1486.80439 -0.65 51.37 4048 4048 MS2 16/44 Linfeng_20130204_CTCF_3.raw Medium LRLDSIVIQQGR Unambiguous 6 1 F5GZI1 CID 1.0000 0.0000 1 1 205 2.27 0.00 1 12 50 3 466.61249 1397.82291 0.37 42.93 3166 3166 MS2 17/44 Linfeng_20130204_CTCF_3.raw High LFELLEK Unambiguous 6 1 F5GZI1 CID 1.0000 0.0000 1 1 231 2.18 0.00 0 20 50 2 446.26376 891.52025 1.80 50.30 3936 3936 MS2 11/12 Linfeng_20130204_CTCF_3.raw High DFNQFIK Unambiguous 6 1 F5GZI1 CID 1.0000 0.0000 1 1 373 2.02 0.00 0 7 50 2 456.23392 911.46056 -1.78 42.47 3120 3120 MS2 10/12 Linfeng_20130204_CTCF_3.raw P08107 Heat shock 70 kDa protein 1A/1B OS=Homo sapiens GN=HSPA1A PE=1 SV=5 - [HSP71_HUMAN] 9.05 5 3 4 5 0.00 17.30 9.05 4 5 641 70.0 5.66 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High NQVALNPQNTVFDAK Unambiguous 2 1 P08107 CID 1.0000 0.0000 1 1 379 4.09 0.00 0 5 50 2 829.92957 1658.85185 1.28 41.88 3056 3056 MS2 21/28 Linfeng_20130204_CTCF_4.raw High IINEPTAAAIAYGLDR Unambiguous 5 1 P08107 CID 1.0000 0.0000 1 1 368 4.05 0.00 0 10 44 2 844.45575 1687.90422 1.65 51.45 4057 4057 MS2 22/30 Linfeng_20130204_CTCF_4.raw High HWPFQVINDGDKPK Unambiguous 5 1 P08107 CID 1.0000 0.0000 1 1 561 3.50 0.00 1 13 50 3 560.95612 1680.85379 2.65 42.96 3168 3168 MS2 18/52 Linfeng_20130204_CTCF_4.raw High TTPSYVAFTDTER Unambiguous 16 2 P08107;P11142 CID 1.0000 0.0000 1 1 319 2.93 0.00 0 5 45 2 744.35468 1487.70207 0.51 40.01 2861 2861 MS2 18/24 Linfeng_20130204_CTCF_6.raw High TTPSYVAFTDTER Unambiguous 16 2 P08107;P11142 CID 1.0000 0.0000 1 1 317 2.73 0.00 0 16 50 2 744.35541 1487.70354 1.50 39.83 2847 2847 MS2 17/24 Linfeng_20130204_CTCF_4.raw P15924 Desmoplakin OS=Homo sapiens GN=DSP PE=1 SV=3 - [DESP_HUMAN] 9.02 3 20 20 58 104.54 4.49 10 35 72.09 7.94 18 23 2871 331.6 6.81 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High TmIQSPSGVILQEAADVHAR Unambiguous 3 1 P15924 M2(Oxidation) CID 1.0000 0.0000 1 1 549 5.10 0.00 0 3 13 3 713.70239 2139.09262 2.92 47.36 4393 4393 MS2 29/76 Linfeng_20130201_rIgG_3.raw High LLEAQIATGGIIDPK Unambiguous 2 1 P15924 CID 1.0000 0.0000 1 1 179 4.69 0.00 0 16 50 2 769.94379 1538.88030 0.89 48.48 3762 3762 MS2 24/28 Linfeng_20130204_CTCF_6.raw High TmIQSPSGVILQEAADVHAR Unambiguous 3 1 P15924 M2(Oxidation) CID 1.0000 0.0000 1 1 520 4.53 0.00 0 23 41 3 713.70422 2139.09812 5.48 47.54 3662 3662 MS2 25/76 Linfeng_20130204_CTCF_6.raw High TmIQSPSGVILQEAADVHAR Unambiguous 3 1 P15924 M2(Oxidation) CID 1.0000 0.0000 1 1 533 4.49 0.00 0 9 12 3 713.70178 2139.09079 2.06 47.04 4379 4379 MS2 27/76 Linfeng_20130201_rIgG_5.raw High TmIQSPSGVILQEAADVHAR Unambiguous 3 1 P15924 M2(Oxidation) CID 1.0000 0.0000 1 1 551 4.46 0.00 0 11 12 3 713.70233 2139.09244 2.83 47.02 4418 4418 MS2 30/76 Linfeng_20130201_rIgG_1.raw High TmIQSPSGVILQEAADVHAR Unambiguous 3 1 P15924 M2(Oxidation) CID 1.0000 0.0000 1 1 539 4.35 0.00 0 15 25 3 713.70184 2139.09098 2.15 47.14 4351 4351 MS2 27/76 Linfeng_20130201_rIgG_2.raw High TmIQSPSGVILQEAADVHAR Unambiguous 3 1 P15924 M2(Oxidation) CID 1.0000 0.0000 1 1 544 4.16 0.00 0 18 21 3 713.70215 2139.09189 2.57 47.39 4398 4398 MS2 27/76 Linfeng_20130201_rIgG_4.raw High TmIQSPSGVILQEAADVHAR Unambiguous 3 1 P15924 M2(Oxidation) CID 1.0000 0.0000 1 1 543 3.93 0.00 0 31 28 3 713.70105 2139.08860 1.03 47.52 4432 4432 MS2 25/76 Linfeng_20130201_rIgG_9.raw High TMIQSPSGVILQEAADVHAR Unambiguous 3 1 P15924 CID 1.0000 0.0000 1 1 469 3.91 0.00 0 2 49 3 708.37207 2123.10166 4.80 49.64 3885 3885 MS2 24/76 Linfeng_20130204_CTCF_6.raw High AQQIHSQTSQQYPLYDLDLGK Unambiguous 3 1 P15924 CID 1.0000 0.0000 1 1 533 3.91 0.00 0 0 50 3 811.74133 2433.20945 2.02 47.37 3645 3645 MS2 25/80 Linfeng_20130204_CTCF_6.raw High TmIQSPSGVILQEAADVHAR Unambiguous 3 1 P15924 M2(Oxidation) CID 1.0000 0.0000 1 1 548 3.86 0.00 0 27 21 3 713.70117 2139.08896 1.20 47.41 4412 4412 MS2 29/76 Linfeng_20130201_rIgG_10.raw High LNDSILQATEQR Unambiguous 1 1 P15924 CID 1.0000 0.0000 1 1 527 3.78 0.00 0 6 50 2 694.36383 1387.72038 1.98 39.34 3551 3551 MS2 19/22 Linfeng_20130201_rIgG_9.raw High LNDSILQATEQR Unambiguous 1 1 P15924 CID 1.0000 0.0000 1 1 518 3.63 0.00 0 0 50 2 694.36383 1387.72038 1.98 39.29 2783 2783 MS2 19/22 Linfeng_20130204_CTCF_6.raw High SVEDRFDQQKNDYDQLQK Unambiguous 3 1 P15924 CID 1.0000 0.0000 1 1 339 3.38 0.00 2 0 25 3 752.68890 2256.05216 -0.29 32.51 2089 2089 MS2 18/68 Linfeng_20130204_CTCF_6.raw High SVEDRFDQQKNDYDQLQK Unambiguous 3 1 P15924 CID 1.0000 0.0000 1 1 339 3.38 0.00 2 0 50 3 752.68872 2256.05161 -0.53 32.19 2828 2828 MS2 24/68 Linfeng_20130201_rIgG_10.raw High NTKIEVLEEELR Unambiguous 3 1 P15924 CID 1.0000 0.0000 1 1 434 3.37 0.00 1 36 50 2 736.90332 1472.79936 2.58 45.02 3398 3398 MS2 19/22 Linfeng_20130204_CTCF_6.raw High QLQNIIQATSR Unambiguous 3 1 P15924 CID 1.0000 0.0000 1 1 477 3.31 0.00 0 10 35 2 636.35779 1271.70830 1.28 37.50 2593 2593 MS2 18/20 Linfeng_20130204_CTCF_6.raw High LNDSILQATEQR Unambiguous 1 1 P15924 CID 1.0000 0.0000 1 1 546 3.19 0.00 0 9 50 2 694.36401 1387.72075 2.24 39.26 3536 3536 MS2 19/22 Linfeng_20130201_rIgG_10.raw High ESHRLPVDIAYK Unambiguous 2 1 P15924 CID 1.0000 0.0000 1 1 420 3.15 0.00 1 20 50 3 476.59418 1427.76798 2.65 33.74 2214 2214 MS2 18/44 Linfeng_20130204_CTCF_6.raw High NTKIEVLEEELR Unambiguous 3 1 P15924 CID 1.0000 0.0000 1 1 475 3.13 0.00 1 39 29 3 491.60428 1472.79828 1.84 44.91 3386 3386 MS2 18/44 Linfeng_20130204_CTCF_6.raw High LNDSILQATEQR Unambiguous 1 1 P15924 CID 1.0000 0.0000 1 1 537 3.12 0.00 0 19 50 2 694.36438 1387.72148 2.77 39.02 3502 3502 MS2 19/22 Linfeng_20130201_rIgG_2.raw High VVIVDPETNKEMSVQEAYKK Unambiguous 2 1 P15924 CID 1.0000 0.0000 1 1 446 3.08 0.00 2 8 28 3 769.73560 2307.19223 0.89 35.99 2440 2440 MS2 22/76 Linfeng_20130204_CTCF_6.raw High SEADSDKNATILELR Unambiguous 1 1 P15924 CID 1.0000 0.0000 1 1 568 3.03 0.00 1 10 50 3 554.61694 1661.83628 1.28 38.10 2654 2654 MS2 26/56 Linfeng_20130204_CTCF_6.raw High TmIQSPSGVILQEAADVHAR Unambiguous 3 1 P15924 M2(Oxidation) CID 1.0000 0.0000 1 1 533 3.02 0.00 0 19 15 3 713.70142 2139.08969 1.55 47.20 4440 4440 MS2 24/76 Linfeng_20130201_rIgG_1.raw High LNDSILQATEQR Unambiguous 1 1 P15924 CID 1.0000 0.0000 1 1 549 2.96 0.00 0 11 50 2 694.36322 1387.71916 1.10 38.84 3483 3483 MS2 19/22 Linfeng_20130201_rIgG_2.raw High IEVLEEELR Unambiguous 3 1 P15924 CID 1.0000 0.0000 1 1 645 2.93 0.00 0 24 30 2 565.30884 1129.61040 0.36 44.01 3290 3290 MS2 15/16 Linfeng_20130204_CTCF_6.raw High NLRLEYDDLRR Unambiguous 1 1 P15924 CID 1.0000 0.0000 1 1 533 2.90 0.00 2 7 50 3 488.26373 1462.77665 0.33 35.03 2913 2913 MS2 18/40 Linfeng_20130201_rIgG_5.raw High TmIQSPSGVILQEAADVHAR Unambiguous 3 1 P15924 M2(Oxidation) CID 1.0000 0.0000 1 1 527 2.82 0.00 0 33 28 3 713.70306 2139.09464 3.86 47.44 3943 3943 MS2 24/76 Linfeng_20130204_CTCF_2.raw High ESHRLPVDIAYK Unambiguous 2 1 P15924 CID 1.0000 0.0000 1 1 463 2.82 0.00 1 0 50 3 476.59201 1427.76148 -1.90 33.52 2968 2968 MS2 16/44 Linfeng_20130201_rIgG_9.raw High LNDSILQATEQR Unambiguous 1 1 P15924 CID 1.0000 0.0000 1 1 541 2.82 0.00 0 0 50 2 694.36243 1387.71758 -0.05 39.49 3601 3601 MS2 19/22 Linfeng_20130201_rIgG_6.raw High LNDSILQATEQR Unambiguous 1 1 P15924 CID 1.0000 0.0000 1 1 510 2.80 0.00 0 41 50 2 694.35620 1387.70513 -9.02 39.56 3573 3573 MS2 17/22 Linfeng_20130201_rIgG_9.raw High QQIQNDLNQWK Unambiguous 2 1 P15924 CID 1.0000 0.0000 1 1 439 2.78 0.00 0 12 50 2 707.85980 1414.71233 3.48 38.43 2689 2689 MS2 14/20 Linfeng_20130204_CTCF_6.raw High SVEDRFDQQKNDYDQLQK Unambiguous 3 1 P15924 CID 1.0000 0.0000 1 1 339 2.77 0.00 2 5 50 3 752.68866 2256.05143 -0.61 32.36 2854 2854 MS2 19/68 Linfeng_20130201_rIgG_9.raw High LLQLQEQMR Unambiguous 2 1 P15924 CID 1.0000 0.0000 1 1 629 2.73 0.00 0 27 23 2 579.81995 1158.63262 2.25 38.45 2692 2692 MS2 14/16 Linfeng_20130204_CTCF_6.raw High SVEDRFDQQKNDYDQLQK Unambiguous 3 1 P15924 CID 1.0000 0.0000 1 1 352 2.70 0.00 2 30 50 3 752.68958 2256.05417 0.60 32.35 2399 2399 MS2 18/68 Linfeng_20130204_CTCF_2.raw High LLQLQEQMR Unambiguous 2 1 P15924 CID 1.0000 0.0000 1 1 640 2.65 0.00 0 30 50 2 579.81909 1158.63091 0.77 37.83 3402 3402 MS2 15/16 Linfeng_20130201_rIgG_1.raw High IEVLEEELR Unambiguous 3 1 P15924 CID 1.0000 0.0000 1 1 475 2.62 0.00 0 20 32 2 565.30835 1129.60942 -0.50 43.54 4013 4013 MS2 15/16 Linfeng_20130201_rIgG_1.raw High GLVGIEFKEK Unambiguous 2 1 P15924 CID 1.0000 0.0000 1 1 315 2.61 0.00 1 26 50 2 560.32550 1119.64372 2.52 38.44 2690 2690 MS2 14/18 Linfeng_20130204_CTCF_6.raw High AELIVQPELK Unambiguous 2 1 P15924 CID 1.0000 0.0000 1 1 157 2.59 0.00 0 13 50 2 570.33850 1139.66973 2.29 41.41 3013 3013 MS2 14/18 Linfeng_20130204_CTCF_6.raw High LLQLQEQMR Unambiguous 2 1 P15924 CID 1.0000 0.0000 1 1 618 2.57 0.00 0 24 50 2 579.81836 1158.62944 -0.49 38.30 3434 3434 MS2 15/16 Linfeng_20130201_rIgG_10.raw Medium VIETNRENDKQETWMLMELQK Unambiguous 3 1 P15924 CID 1.0000 0.0000 1 1 481 2.57 0.00 2 16 20 4 659.57794 2635.28994 1.65 48.07 3719 3719 MS2 20/120 Linfeng_20130204_CTCF_6.raw High QQIQNDLNQWK Unambiguous 2 1 P15924 CID 1.0000 0.0000 1 1 467 2.55 0.00 0 29 50 2 707.85632 1414.70537 -1.44 38.34 3438 3438 MS2 13/20 Linfeng_20130201_rIgG_10.raw High IEVLEEELR Unambiguous 3 1 P15924 CID 1.0000 0.0000 1 1 472 2.53 0.00 0 31 50 2 565.30817 1129.60906 -0.83 44.00 4020 4020 MS2 14/16 Linfeng_20130201_rIgG_4.raw Medium AQQIHSQTSQQYPLYDLDLGKFGEK Unambiguous 3 1 P15924 CID 1.0000 0.0000 1 1 484 2.52 0.00 1 0 50 4 724.36761 2894.44863 5.74 50.39 3965 3965 MS2 25/144 Linfeng_20130204_CTCF_6.raw High QLQNIIQATSR Unambiguous 3 1 P15924 CID 1.0000 0.0000 1 1 476 2.50 0.00 0 44 50 2 636.35797 1271.70867 1.57 37.27 2882 2882 MS2 14/20 Linfeng_20130204_CTCF_2.raw High LLQLQEQMR Unambiguous 2 1 P15924 CID 1.0000 0.0000 1 1 654 2.48 0.00 0 47 50 2 579.81885 1158.63042 0.35 38.22 3425 3425 MS2 15/16 Linfeng_20130201_rIgG_3.raw High LLQLQEQMR Unambiguous 2 1 P15924 CID 1.0000 0.0000 1 1 618 2.43 0.00 0 22 50 2 579.81836 1158.62944 -0.49 38.33 3447 3447 MS2 14/16 Linfeng_20130201_rIgG_9.raw High IEVLEEELR Unambiguous 3 1 P15924 CID 1.0000 0.0000 1 1 480 2.42 0.00 0 49 50 2 565.30768 1129.60808 -1.69 43.87 4013 4013 MS2 15/16 Linfeng_20130201_rIgG_3.raw Medium ESHRLPVDIAYK Unambiguous 2 1 P15924 CID 1.0000 0.0000 1 1 467 2.40 0.00 1 12 50 3 476.59247 1427.76285 -0.94 33.86 3001 3001 MS2 18/44 Linfeng_20130201_rIgG_9.raw High LLQLQEQMR Unambiguous 2 1 P15924 CID 1.0000 0.0000 1 1 669 2.39 0.00 0 33 50 2 579.81866 1158.63005 0.04 38.18 3405 3405 MS2 15/16 Linfeng_20130201_rIgG_4.raw Medium ESHRLPVDIAYK Unambiguous 2 1 P15924 CID 1.0000 0.0000 1 1 467 2.39 0.00 1 26 50 3 476.59241 1427.76267 -1.07 33.57 2963 2963 MS2 17/44 Linfeng_20130201_rIgG_10.raw High IEVLEEELR Unambiguous 3 1 P15924 CID 1.0000 0.0000 1 1 468 2.37 0.00 0 50 50 2 565.30847 1129.60967 -0.29 43.73 3987 3987 MS2 14/16 Linfeng_20130201_rIgG_2.raw Medium AESGPDLRYEVTSGGGGTSR Unambiguous 2 1 P15924 CID 1.0000 0.0000 1 1 345 2.29 0.00 1 11 50 3 665.98254 1995.93308 -1.83 32.27 2618 2618 MS2 20/76 Linfeng_20130201_rIgG_5.raw High QQIQNDLNQWK Unambiguous 2 1 P15924 CID 1.0000 0.0000 1 1 446 2.27 0.00 0 31 50 2 707.85754 1414.70781 0.29 38.33 3436 3436 MS2 15/20 Linfeng_20130201_rIgG_3.raw High YIELLTR Unambiguous 3 1 P15924 CID 1.0000 0.0000 1 1 200 2.22 0.00 0 3 34 2 454.26660 907.52593 1.27 42.14 3090 3090 MS2 11/12 Linfeng_20130204_CTCF_6.raw High LLQLQEQMR Unambiguous 2 1 P15924 CID 1.0000 0.0000 1 1 635 2.13 0.00 0 39 50 2 579.81909 1158.63091 0.77 38.43 3446 3446 MS2 14/16 Linfeng_20130201_rIgG_3.raw High QQIQNDLNQWK Unambiguous 2 1 P15924 CID 1.0000 0.0000 1 1 408 2.09 0.00 0 38 50 2 707.85687 1414.70647 -0.66 38.47 3461 3461 MS2 12/20 Linfeng_20130201_rIgG_9.raw High YIELLTR Unambiguous 3 1 P15924 CID 1.0000 0.0000 1 1 233 2.07 0.00 0 6 50 2 454.26508 907.52287 -2.09 42.01 3826 3826 MS2 11/12 Linfeng_20130201_rIgG_9.raw Q15393 Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF3B3 PE=1 SV=4 - [SF3B3_HUMAN] 8.63 2 8 8 8 26.71 8.63 8 8 1217 135.5 5.26 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High TPVEEVPAAIAPFQGR Unambiguous 2 1 Q15393 CID 1.0000 0.0000 1 1 426 3.96 0.00 0 13 50 2 841.44965 1681.89202 0.67 48.67 3759 3759 MS2 23/30 Linfeng_20130204_CTCF_3.raw High MQGQEAVLAMSSR Unambiguous 1 1 Q15393 CID 1.0000 0.0000 1 1 391 3.86 0.00 0 25 50 2 704.34076 1407.67424 1.61 36.78 2539 2539 MS2 18/24 Linfeng_20130204_CTCF_3.raw High ITLETDEDmVTEIR Unambiguous 1 1 Q15393 M9(Oxidation) CID 1.0000 0.0000 1 1 399 3.85 0.00 0 9 50 2 840.90533 1680.80339 2.17 41.83 3054 3054 MS2 17/26 Linfeng_20130204_CTCF_3.raw High FLAVGLVDNTVR Unambiguous 1 1 Q15393 CID 1.0000 0.0000 1 1 306 3.59 0.00 0 14 50 2 652.37415 1303.74101 3.13 50.83 3992 3992 MS2 19/22 Linfeng_20130204_CTCF_3.raw High HIANYISGIQTIGHR Unambiguous 2 1 Q15393 CID 1.0000 0.0000 1 1 453 3.51 0.00 0 20 50 3 560.63696 1679.89634 -0.79 40.18 2885 2885 MS2 23/56 Linfeng_20130204_CTCF_3.raw High TVLDPVTGDLSDTR Unambiguous 1 1 Q15393 CID 1.0000 0.0000 1 1 479 3.39 0.00 0 6 50 2 744.88324 1488.75920 3.43 42.32 3105 3105 MS2 21/26 Linfeng_20130204_CTCF_3.raw High SVAGGFVYTYK Unambiguous 2 1 Q15393 CID 1.0000 0.0000 1 1 583 2.35 0.00 0 10 50 2 596.30365 1191.60002 -3.74 40.39 2906 2906 MS2 16/20 Linfeng_20130204_CTCF_3.raw High SWLSYSYQSR Unambiguous 1 1 Q15393 CID 1.0000 0.0000 1 1 278 2.19 0.00 0 22 50 2 638.80090 1276.59453 -0.91 44.54 3332 3332 MS2 12/18 Linfeng_20130204_CTCF_3.raw P49711 Transcriptional repressor CTCF OS=Homo sapiens GN=CTCF PE=1 SV=1 - [CTCF_HUMAN] 8.39 2 6 6 10 36.66 8.39 6 10 727 82.7 6.96 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High cPDcDMAFVTSGELVR Unambiguous 1 1 P49711 C1(Carbamidomethyl); C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 77 4.95 0.00 0 5 30 2 928.90167 1856.79607 -0.86 49.76 3881 3881 MS2 23/30 Linfeng_20130204_CTCF_3.raw High cPDcDmAFVTSGELVR Unambiguous 1 1 P49711 C1(Carbamidomethyl); C4(Carbamidomethyl); M6(Oxidation) CID 1.0000 0.0000 1 1 93 4.94 0.00 0 5 50 2 936.90216 1872.79704 2.38 42.88 3161 3161 MS2 23/30 Linfeng_20130204_CTCF_3.raw High cSMcDYASVEVSK Unambiguous 2 1 P49711 C1(Carbamidomethyl); C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 32 4.16 0.00 0 8 50 2 768.31195 1535.61662 -0.60 34.93 2357 2357 MS2 19/24 Linfeng_20130204_CTCF_3.raw High cSMcDYASVEVSK Unambiguous 2 1 P49711 C1(Carbamidomethyl); C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 40 4.06 0.00 0 34 50 2 768.31464 1535.62200 2.90 35.85 2447 2447 MS2 20/24 Linfeng_20130204_CTCF_3.raw High TFQcELcSYTcPR Unambiguous 1 1 P49711 C4(Carbamidomethyl); C7(Carbamidomethyl); C11(Carbamidomethyl) CID 1.0000 0.0000 1 1 54 3.73 0.00 0 13 50 2 861.35712 1721.70696 -0.65 42.19 3088 3088 MS2 19/24 Linfeng_20130204_CTCF_4.raw High TFQcELcSYTcPR Unambiguous 1 1 P49711 C4(Carbamidomethyl); C7(Carbamidomethyl); C11(Carbamidomethyl) CID 1.0000 0.0000 1 1 58 3.54 0.00 0 29 17 2 861.35651 1721.70574 -1.36 42.00 3071 3071 MS2 18/24 Linfeng_20130204_CTCF_3.raw High PFQcSLcSYASR Unambiguous 2 1 P49711 C4(Carbamidomethyl); C7(Carbamidomethyl) CID 1.0000 0.0000 1 1 114 3.41 0.00 0 15 50 2 738.32440 1475.64153 0.60 37.80 2642 2642 MS2 18/22 Linfeng_20130204_CTCF_3.raw High cSMcDYASVEVSK Unambiguous 2 1 P49711 C1(Carbamidomethyl); C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 31 2.78 0.00 0 13 50 2 768.31281 1535.61833 0.52 35.22 2381 2381 MS2 14/24 Linfeng_20130204_CTCF_4.raw Medium SHTGERPFQcSLcSYASR Unambiguous 2 1 P49711 C10(Carbamidomethyl); C13(Carbamidomethyl) CID 1.0000 0.0000 1 1 137 2.70 0.00 1 20 50 4 536.49213 2142.94668 1.04 34.06 2267 2267 MS2 30/102 Linfeng_20130204_CTCF_4.raw Medium KTFQcELcSYTcPR Unambiguous 1 1 P49711 C5(Carbamidomethyl); C8(Carbamidomethyl); C12(Carbamidomethyl) CID 1.0000 0.0000 1 1 127 2.37 0.00 1 28 50 3 617.27148 1849.79990 -1.70 38.16 2678 2678 MS2 16/52 Linfeng_20130204_CTCF_3.raw C9JHZ3 Uncharacterized protein OS=Homo sapiens GN=RRP1B PE=4 SV=1 - [C9JHZ3_HUMAN] 8.24 3 4 4 4 13.81 8.24 4 4 740 82.1 9.82 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High VGDGDLSAEEIPENEVSLR Unambiguous 3 1 C9JHZ3 CID 1.0000 0.0000 1 1 310 4.60 0.00 0 0 50 2 1014.99036 2028.97344 0.64 44.52 3330 3330 MS2 22/36 Linfeng_20130204_CTCF_3.raw High AGPGSLELcGLPSQK Unambiguous 3 1 C9JHZ3 C9(Carbamidomethyl) CID 1.0000 0.0000 1 1 476 3.64 0.00 0 8 50 2 757.38660 1513.76592 -1.37 42.44 3117 3117 MS2 17/28 Linfeng_20130204_CTCF_3.raw High VFcVEEEDSESSLQK Unambiguous 3 1 C9JHZ3 C3(Carbamidomethyl) CID 1.0000 0.0000 1 1 159 3.17 0.00 0 0 50 2 893.39709 1785.78691 1.17 36.08 2470 2470 MS2 20/28 Linfeng_20130204_CTCF_3.raw High ETGGFSQEELLK Unambiguous 2 1 C9JHZ3 CID 1.0000 0.0000 1 1 472 2.40 0.00 0 19 50 2 669.33252 1337.65776 -0.48 40.30 2897 2897 MS2 14/22 Linfeng_20130204_CTCF_3.raw C9JT33 Insulin-like growth factor 2 mRNA-binding protein 1 OS=Homo sapiens GN=IGF2BP1 PE=4 SV=1 - [C9JT33_HUMAN] 8.22 2 3 3 3 7.34 8.22 3 3 438 48.6 9.00 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High IIGHFYASQMAQR Unambiguous 2 1 C9JT33 CID 1.0000 0.0000 1 1 504 2.64 0.00 0 68 50 3 507.92590 1521.76316 0.00 35.85 2442 2442 MS2 18/48 Linfeng_20130204_CTCF_4.raw High MVIITGPPEAQFK Unambiguous 2 1 C9JT33 CID 1.0000 0.0000 1 1 514 2.63 0.00 0 0 50 2 715.89240 1430.77751 4.36 47.74 3662 3662 MS2 15/24 Linfeng_20130204_CTCF_4.raw High ISYSGQFLVK Unambiguous 2 1 C9JT33 CID 1.0000 0.0000 1 1 335 2.06 0.00 0 24 50 2 571.31592 1141.62456 -0.58 43.06 3178 3178 MS2 13/18 Linfeng_20130204_CTCF_4.raw O75533 Splicing factor 3B subunit 1 OS=Homo sapiens GN=SF3B1 PE=1 SV=3 - [SF3B1_HUMAN] 8.21 1 7 7 7 19.22 8.21 7 7 1304 145.7 7.09 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High NRPLSDEELDAmFPEGYK Unambiguous 1 1 O75533 M12(Oxidation) CID 1.0000 0.0000 1 1 254 3.47 0.00 1 83 50 3 709.66156 2126.97013 0.05 41.92 3360 3360 MS2 26/68 Linfeng_20130204_CTCF_2.raw High QLVDTTVELANK Unambiguous 1 1 O75533 CID 1.0000 0.0000 1 1 561 3.36 0.00 0 27 50 2 665.86420 1330.72112 -0.16 37.86 2941 2941 MS2 17/22 Linfeng_20130204_CTCF_2.raw High LLVDVDESTLSPEEQKER Unambiguous 1 1 O75533 CID 1.0000 0.0000 1 1 526 2.72 0.00 1 11 50 3 696.35431 2087.04837 -0.96 41.43 3310 3310 MS2 22/68 Linfeng_20130204_CTCF_2.raw High LSSWDQAETPGHTPSLR Unambiguous 1 1 O75533 CID 1.0000 0.0000 1 1 408 2.60 0.00 0 15 50 3 627.97473 1881.90964 0.32 36.36 2792 2792 MS2 20/64 Linfeng_20130204_CTCF_2.raw Medium IWDPTPSHTPAGAATPGR Unambiguous 1 1 O75533 CID 1.0000 0.0000 1 1 483 2.45 0.00 0 16 50 3 611.30646 1831.90482 -2.10 32.09 2373 2373 MS2 23/68 Linfeng_20130204_CTCF_2.raw Medium IVDDLKDEAEQYR Unambiguous 1 1 O75533 CID 1.0000 0.0000 1 1 497 2.37 0.00 1 22 50 3 531.92926 1593.77323 -1.46 34.71 2629 2629 MS2 15/48 Linfeng_20130204_CTCF_2.raw High ATVNTFGYIAK Unambiguous 1 1 O75533 CID 1.0000 0.0000 1 1 383 2.25 0.00 0 16 50 2 592.82043 1184.63359 2.15 39.40 3101 3101 MS2 15/20 Linfeng_20130204_CTCF_2.raw Q5T749 Keratinocyte proline-rich protein OS=Homo sapiens GN=KPRP PE=1 SV=1 - [KPRP_HUMAN] 8.12 1 3 3 4 9.77 8.12 3 4 579 64.1 8.27 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High PSYSScFPQYR Unambiguous 1 1 Q5T749 C6(Carbamidomethyl) CID 1.0000 0.0000 1 1 124 2.61 0.00 0 18 50 2 696.30621 1391.60515 0.19 36.84 3286 3286 MS2 13/20 Linfeng_20130201_rIgG_3.raw Medium SQScGPQPSWGAScPELRPHVEPR Unambiguous 1 1 Q5T749 C4(Carbamidomethyl); C14(Carbamidomethyl) CID 1.0000 0.0000 1 1 284 2.56 0.00 1 12 50 4 680.56671 2719.24502 -0.55 36.52 3238 3238 MS2 30/138 Linfeng_20130201_rIgG_4.raw Medium LRPEPcISLEPR Unambiguous 1 1 Q5T749 C6(Carbamidomethyl) CID 1.0000 0.0000 1 1 454 2.46 0.00 1 14 50 3 489.59662 1466.77530 -2.17 36.67 3284 3284 MS2 21/44 Linfeng_20130201_rIgG_1.raw High PSYSScFPQYR Unambiguous 1 1 Q5T749 C6(Carbamidomethyl) CID 1.0000 0.0000 1 1 129 2.15 0.00 0 19 50 2 696.30640 1391.60552 0.45 36.56 3273 3273 MS2 14/20 Linfeng_20130201_rIgG_1.raw Q14574-2 Isoform 3B of Desmocollin-3 OS=Homo sapiens GN=DSC3 - [DSC3_HUMAN] 7.87 2 4 4 4 12.27 7.87 4 4 839 93.4 6.32 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High IPIEDKDLINTANWR Unambiguous 2 1 Q14574-2 CID 1.0000 0.0000 1 1 395 3.59 0.00 1 8 28 3 599.98987 1797.95505 3.11 47.31 3639 3639 MS2 24/56 Linfeng_20130204_CTCF_6.raw High QVNLEIGVNNEAPFAR Unambiguous 2 1 Q14574-2 CID 1.0000 0.0000 1 1 472 3.37 0.00 0 11 50 2 885.96167 1770.91606 1.50 48.68 3782 3782 MS2 20/30 Linfeng_20130204_CTCF_6.raw High ISTDKETNEGVLSVVKPLNYEENR Unambiguous 2 1 Q14574-2 CID 1.0000 0.0000 1 1 447 2.77 0.00 2 36 49 3 912.13568 2734.39249 1.10 44.68 3361 3361 MS2 27/92 Linfeng_20130204_CTCF_6.raw High LKYSILQQTPR Unambiguous 2 1 Q14574-2 CID 1.0000 0.0000 1 1 281 2.54 0.00 1 22 47 3 449.59814 1346.77988 0.58 36.42 2484 2484 MS2 17/40 Linfeng_20130204_CTCF_6.raw Q7Z794 "Keratin, type II cytoskeletal 1b OS=Homo sapiens GN=KRT77 PE=1 SV=3 - [K2C1B_HUMAN]" 7.79 1 2 4 76 142.16 7.79 4 41 124.47 5.71 3 35 578 61.9 5.99 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 566 4.58 0.00 0 1 4 2 738.39624 1475.78520 -0.08 35.02 2703 2703 MS2 20/22 Linfeng_20130204_CTCF_1.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 582 4.55 0.00 0 0 50 2 738.39642 1475.78557 0.17 34.01 2604 2604 MS2 20/22 Linfeng_20130204_CTCF_1.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 541 4.53 0.00 0 0 29 2 738.39801 1475.78874 2.32 35.37 2396 2396 MS2 20/22 Linfeng_20130204_CTCF_4.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 576 4.51 0.00 0 0 13 2 738.39642 1475.78557 0.17 35.28 3175 3175 MS2 20/22 Linfeng_20130201_rIgG_6.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 541 4.42 0.00 0 0 20 2 738.39716 1475.78703 1.16 35.26 2389 2389 MS2 20/22 Linfeng_20130204_CTCF_3.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 546 4.42 0.00 0 11 50 2 738.39691 1475.78655 0.83 34.26 2266 2266 MS2 20/22 Linfeng_20130204_CTCF_6.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 543 4.40 0.00 0 1 9 2 738.39697 1475.78667 0.91 35.32 2373 2373 MS2 19/22 Linfeng_20130204_CTCF_6.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 593 4.33 0.00 0 0 12 2 738.39655 1475.78581 0.33 34.88 3083 3083 MS2 20/22 Linfeng_20130201_rIgG_2.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 584 4.29 0.00 0 0 32 2 738.39600 1475.78472 -0.41 34.74 3090 3090 MS2 20/22 Linfeng_20130201_rIgG_1.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 545 4.24 0.00 0 3 50 2 738.39746 1475.78765 1.57 34.31 2490 2490 MS2 20/22 Linfeng_20130204_CTCF_7.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 550 4.24 0.00 0 0 4 2 738.39618 1475.78508 -0.16 35.12 3113 3113 MS2 20/22 Linfeng_20130201_rIgG_3.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 588 4.21 0.00 0 2 25 2 738.39575 1475.78423 -0.74 35.12 3126 3126 MS2 20/22 Linfeng_20130201_rIgG_9.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 550 4.19 0.00 0 4 50 2 738.39703 1475.78679 1.00 35.79 2602 2602 MS2 20/22 Linfeng_20130204_CTCF_10.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 551 4.19 0.00 0 0 26 2 738.39618 1475.78508 -0.16 35.22 3220 3220 MS2 20/22 Linfeng_20130201_rIgG_7.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 591 4.16 0.00 0 0 50 2 738.39587 1475.78447 -0.58 34.14 3113 3113 MS2 20/22 Linfeng_20130201_rIgG_7.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 542 4.16 0.00 0 2 45 2 738.39825 1475.78923 2.65 35.43 2601 2601 MS2 17/22 Linfeng_20130204_CTCF_7.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 547 4.14 0.00 0 0 12 2 738.39648 1475.78569 0.25 35.46 2624 2624 MS2 18/22 Linfeng_20130204_CTCF_9.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 597 4.12 0.00 0 1 49 2 738.39661 1475.78594 0.42 34.96 3100 3100 MS2 20/22 Linfeng_20130201_rIgG_10.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 558 4.10 0.00 0 0 50 2 738.39612 1475.78496 -0.25 33.76 2974 2974 MS2 20/22 Linfeng_20130201_rIgG_2.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 551 4.09 0.00 0 3 50 2 738.39679 1475.78630 0.66 34.08 2993 2993 MS2 20/22 Linfeng_20130201_rIgG_4.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 586 4.05 0.00 0 9 50 2 738.39624 1475.78520 -0.08 34.38 2516 2516 MS2 19/22 Linfeng_20130204_CTCF_9.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 582 4.04 0.00 0 0 50 2 738.39655 1475.78581 0.33 34.18 3066 3066 MS2 20/22 Linfeng_20130201_rIgG_6.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 551 4.02 0.00 0 0 14 2 738.39612 1475.78496 -0.25 35.17 3102 3102 MS2 19/22 Linfeng_20130201_rIgG_4.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 575 4.01 0.00 0 2 50 2 738.39648 1475.78569 0.25 34.11 2570 2570 MS2 19/22 Linfeng_20130204_CTCF_2.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 490 4.00 0.00 0 3 50 2 738.39819 1475.78911 2.57 35.09 3075 3075 MS2 18/22 Linfeng_20130201_rIgG_8.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 569 3.99 0.00 0 3 50 2 738.39581 1475.78435 -0.66 35.12 2669 2669 MS2 18/22 Linfeng_20130204_CTCF_2.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 595 3.95 0.00 0 3 50 2 738.39661 1475.78594 0.42 34.29 2992 2992 MS2 20/22 Linfeng_20130201_rIgG_8.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 554 3.91 0.00 0 0 50 2 738.39691 1475.78655 0.83 33.75 2992 2992 MS2 18/22 Linfeng_20130201_rIgG_1.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 553 3.91 0.00 0 12 50 2 738.39728 1475.78728 1.33 34.35 2295 2295 MS2 20/22 Linfeng_20130204_CTCF_4.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 580 3.86 0.00 0 0 50 2 738.39636 1475.78545 0.09 33.98 3004 3004 MS2 19/22 Linfeng_20130201_rIgG_10.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 548 3.86 0.00 0 6 50 2 738.39697 1475.78667 0.91 34.03 3005 3005 MS2 19/22 Linfeng_20130201_rIgG_3.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 554 3.83 0.00 0 2 50 2 738.39758 1475.78789 1.74 34.25 2290 2290 MS2 19/22 Linfeng_20130204_CTCF_3.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 579 3.79 0.00 0 0 50 2 738.39526 1475.78325 -1.40 34.10 3025 3025 MS2 19/22 Linfeng_20130201_rIgG_9.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 592 3.79 0.00 0 8 50 2 738.39661 1475.78594 0.42 34.73 2494 2494 MS2 19/22 Linfeng_20130204_CTCF_10.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 544 3.70 0.00 0 13 50 2 738.39716 1475.78703 1.16 36.90 3292 3292 MS2 17/22 Linfeng_20130201_rIgG_3.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 553 3.69 0.00 0 0 50 2 738.39685 1475.78642 0.75 34.74 2883 2883 MS2 20/22 Linfeng_20130201_rIgG_5.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 474 3.66 0.00 0 4 50 2 738.40070 1475.79411 5.96 35.25 2567 2567 MS2 16/22 Linfeng_20130204_CTCF_8.raw High VDTLTGEVNFLK Unambiguous 1 1 Q7Z794 CID 1.0000 0.0000 1 1 476 3.64 0.00 0 16 50 2 668.36224 1335.71721 1.26 50.67 3994 3994 MS2 20/22 Linfeng_20130204_CTCF_6.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 592 3.64 0.00 0 17 50 2 738.39545 1475.78362 -1.15 40.94 3306 3306 MS2 16/22 Linfeng_20130204_CTCF_1.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 556 3.58 0.00 0 22 50 2 738.39703 1475.78679 1.00 43.53 3977 3977 MS2 20/22 Linfeng_20130201_rIgG_3.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 556 3.55 0.00 0 17 50 2 738.39838 1475.78948 2.82 40.76 2941 2941 MS2 18/22 Linfeng_20130204_CTCF_4.raw High VDTLTGEVNFLK Unambiguous 1 1 Q7Z794 CID 1.0000 0.0000 1 1 506 3.50 0.00 0 9 42 2 668.36267 1335.71807 1.90 50.25 4824 4824 MS2 19/22 Linfeng_20130201_rIgG_1.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 551 3.47 0.00 0 5 50 2 738.39734 1475.78740 1.41 36.24 3226 3226 MS2 19/22 Linfeng_20130201_rIgG_3.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 541 3.46 0.00 0 15 50 2 738.39716 1475.78703 1.16 36.72 2873 2873 MS2 19/22 Linfeng_20130204_CTCF_1.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 598 3.45 0.00 0 21 50 2 738.39496 1475.78264 -1.82 40.47 3701 3701 MS2 18/22 Linfeng_20130201_rIgG_6.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 584 3.44 0.00 0 50 50 2 738.39661 1475.78594 0.42 40.19 3228 3228 MS2 18/22 Linfeng_20130204_CTCF_1.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 588 3.43 0.00 0 17 50 2 738.39642 1475.78557 0.17 43.71 3996 3996 MS2 18/22 Linfeng_20130201_rIgG_3.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 597 3.36 0.00 0 18 50 2 738.39563 1475.78398 -0.91 40.38 3650 3650 MS2 19/22 Linfeng_20130201_rIgG_3.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 595 3.32 0.00 0 13 50 2 738.39624 1475.78520 -0.08 40.69 2936 2936 MS2 17/22 Linfeng_20130204_CTCF_3.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 556 3.31 0.00 0 20 50 2 738.39709 1475.78691 1.08 36.51 2730 2730 MS2 13/22 Linfeng_20130204_CTCF_9.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 368 3.14 0.00 1 8 3 2 541.80359 1082.59990 0.50 38.24 3272 3272 MS2 15/16 Linfeng_20130201_rIgG_5.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 311 3.05 0.00 1 21 50 2 541.80347 1082.59966 0.27 38.69 3473 3473 MS2 15/16 Linfeng_20130201_rIgG_3.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 343 3.04 0.00 1 56 50 2 541.80585 1082.60442 4.67 39.54 2816 2816 MS2 13/16 Linfeng_20130204_CTCF_4.raw High FLEQQNQVLQTK Unambiguous 3 3 P35908;Q7Z794;P04264 CID 1.0000 0.0000 1 1 518 3.04 0.00 0 0 50 2 738.39722 1475.78716 1.24 34.44 2483 2483 MS2 15/22 Linfeng_20130204_CTCF_8.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 366 3.02 0.00 1 17 36 2 541.80377 1082.60027 0.84 38.78 3468 3468 MS2 15/16 Linfeng_20130201_rIgG_4.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 352 2.92 0.00 1 19 50 2 541.80304 1082.59880 -0.52 38.29 3426 3426 MS2 15/16 Linfeng_20130201_rIgG_2.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 330 2.90 0.00 1 11 50 2 541.80341 1082.59953 0.16 38.46 3467 3467 MS2 15/16 Linfeng_20130201_rIgG_1.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 325 2.81 0.00 1 10 50 2 541.80310 1082.59892 -0.40 38.88 3045 3045 MS2 15/16 Linfeng_20130204_CTCF_2.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 353 2.79 0.00 1 35 16 2 541.80286 1082.59844 -0.85 38.84 3353 3353 MS2 15/16 Linfeng_20130201_rIgG_5.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 370 2.76 0.00 1 11 17 2 541.80353 1082.59978 0.39 39.08 2759 2759 MS2 15/16 Linfeng_20130204_CTCF_6.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 339 2.71 0.00 1 0 17 2 541.80212 1082.59697 -2.21 38.74 3340 3340 MS2 15/16 Linfeng_20130201_rIgG_5.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 370 2.71 0.00 1 33 50 2 541.80371 1082.60015 0.72 39.05 3606 3606 MS2 14/16 Linfeng_20130201_rIgG_7.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 358 2.68 0.00 1 50 50 2 541.80542 1082.60356 3.88 39.43 3002 3002 MS2 15/16 Linfeng_20130204_CTCF_7.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 367 2.67 0.00 1 35 50 2 541.80475 1082.60222 2.64 39.63 3049 3049 MS2 15/16 Linfeng_20130204_CTCF_9.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 353 2.62 0.00 1 15 15 2 541.80292 1082.59856 -0.74 38.71 3336 3336 MS2 15/16 Linfeng_20130201_rIgG_5.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 367 2.61 0.00 1 28 50 2 541.80426 1082.60124 1.74 39.63 2995 2995 MS2 15/16 Linfeng_20130204_CTCF_10.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 356 2.58 0.00 1 19 47 2 541.80518 1082.60307 3.43 40.09 2869 2869 MS2 15/16 Linfeng_20130204_CTCF_6.raw High LQDLEEALQQSK Unambiguous 1 1 Q7Z794 CID 1.0000 0.0000 1 1 478 2.57 0.00 0 30 50 2 701.36646 1401.72563 2.55 42.70 3921 3921 MS2 18/22 Linfeng_20130201_rIgG_1.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 325 2.54 0.00 1 26 41 2 541.80322 1082.59917 -0.18 38.91 3499 3499 MS2 15/16 Linfeng_20130201_rIgG_10.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 325 2.49 0.00 1 33 50 2 541.80322 1082.59917 -0.18 39.27 2988 2988 MS2 15/16 Linfeng_20130204_CTCF_8.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 309 2.37 0.00 1 17 50 2 541.80347 1082.59966 0.27 39.60 3561 3561 MS2 12/16 Linfeng_20130201_rIgG_2.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 367 2.36 0.00 1 47 29 2 541.80359 1082.59990 0.50 39.12 3388 3388 MS2 13/16 Linfeng_20130201_rIgG_5.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 344 2.34 0.00 1 29 50 2 541.80499 1082.60271 3.09 39.44 2810 2810 MS2 14/16 Linfeng_20130204_CTCF_3.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 367 2.33 0.00 1 53 50 2 541.80389 1082.60051 1.06 39.10 3561 3561 MS2 14/16 Linfeng_20130201_rIgG_6.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 354 2.27 0.00 1 19 50 2 541.80298 1082.59868 -0.63 39.96 3606 3606 MS2 12/16 Linfeng_20130201_rIgG_3.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 367 2.21 0.00 1 55 50 2 541.80396 1082.60063 1.18 38.89 3093 3093 MS2 13/16 Linfeng_20130204_CTCF_1.raw Q05BA7 NOP2 protein OS=Homo sapiens GN=NOP2 PE=2 SV=1 - [Q05BA7_HUMAN] 7.64 4 4 4 4 11.41 7.64 4 4 628 69.6 6.58 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High VLLDAPcSGTGVISK Unambiguous 4 1 Q05BA7 C7(Carbamidomethyl) CID 1.0000 0.0000 1 1 478 3.31 0.00 0 14 50 2 758.90637 1516.80547 0.94 39.87 2853 2853 MS2 22/28 Linfeng_20130204_CTCF_3.raw High DLAQALINR Unambiguous 4 1 Q05BA7 CID 1.0000 0.0000 1 1 389 3.16 0.00 0 21 50 2 507.29178 1013.57628 2.38 44.64 3342 3342 MS2 14/16 Linfeng_20130204_CTCF_3.raw High IQDIVGILR Unambiguous 4 1 Q05BA7 CID 1.0000 0.0000 1 1 152 2.58 0.00 0 13 50 2 513.81842 1026.62956 -1.07 49.99 3904 3904 MS2 15/16 Linfeng_20130204_CTCF_3.raw High LVPTGLDFGQEGFTR Unambiguous 4 1 Q05BA7 CID 1.0000 0.0000 1 1 485 2.36 0.00 0 3 50 2 818.92303 1636.83879 3.52 52.02 4113 4113 MS2 11/28 Linfeng_20130204_CTCF_3.raw A1L491 F-box only protein 11 OS=Homo sapiens GN=FBXO11 PE=2 SV=1 - [A1L491_HUMAN] 7.47 4 4 4 4 11.07 7.47 4 4 843 94.0 6.84 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High SQDLSAAPAEQYLQEK Unambiguous 4 1 A1L491 CID 1.0000 0.0000 1 1 406 3.49 0.00 0 0 50 2 889.43451 1777.86174 0.78 41.16 2984 2984 MS2 23/30 Linfeng_20130204_CTCF_3.raw High STcTVGSAVcVSGQGAcPTIK Unambiguous 4 1 A1L491 C3(Carbamidomethyl); C10(Carbamidomethyl); C17(Carbamidomethyl) CID 1.0000 0.0000 1 1 261 2.64 0.00 0 0 50 2 1070.49707 2139.98686 1.70 35.10 2373 2373 MS2 24/40 Linfeng_20130204_CTCF_3.raw High GLLEENDIFR Unambiguous 3 1 A1L491 CID 1.0000 0.0000 1 1 580 2.56 0.00 0 46 50 2 603.31494 1205.62261 5.36 51.15 4026 4026 MS2 14/18 Linfeng_20130204_CTCF_3.raw Medium FYQINPEEYEHPNPWK Unambiguous 4 1 A1L491 CID 1.0000 0.0000 1 1 284 2.38 0.00 0 5 28 3 697.65955 2090.96408 1.61 47.38 3624 3624 MS2 19/60 Linfeng_20130204_CTCF_3.raw Q9ULU4-4 Isoform 4 of Protein kinase C-binding protein 1 OS=Homo sapiens GN=ZMYND8 - [PKCB1_HUMAN] 7.46 18 3 3 3 8.15 7.46 3 3 764 82.6 5.67 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High ScTQSATAPQQEADAEVNTETLNK Unambiguous 18 1 Q9ULU4-4 C2(Carbamidomethyl) CID 1.0000 0.0000 1 1 189 2.96 0.00 0 0 50 3 865.05951 2593.16397 -1.68 32.66 2429 2429 MS2 26/92 Linfeng_20130204_CTCF_2.raw High PFSPQLSAPITTK Unambiguous 18 1 Q9ULU4-4 CID 1.0000 0.0000 1 1 490 2.81 0.00 0 15 50 2 693.88477 1386.76225 -0.39 42.12 3380 3380 MS2 15/24 Linfeng_20130204_CTCF_2.raw Medium TPPSTTVGSHSPPETPVLTR Unambiguous 18 1 Q9ULU4-4 CID 1.0000 0.0000 1 1 537 2.39 0.00 0 5 50 3 687.68994 2061.05527 -2.87 31.99 2363 2363 MS2 22/76 Linfeng_20130204_CTCF_2.raw P46013-2 Isoform Short of Antigen KI-67 OS=Homo sapiens GN=MKI67 - [KI67_HUMAN] 7.35 3 12 12 12 33.07 7.35 12 12 2896 319.2 9.51 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High ELFQTPcTDNPTTDEK Unambiguous 3 1 P46013-2 C7(Carbamidomethyl) CID 1.0000 0.0000 1 1 117 3.50 0.00 0 0 50 2 948.41998 1895.83269 -0.07 37.62 2963 2963 MS2 20/30 Linfeng_20130204_CTCF_1.raw High AQALEDLAGFK Unambiguous 3 1 P46013-2 CID 1.0000 0.0000 1 1 537 3.40 0.00 0 6 50 2 581.81097 1162.61467 3.73 46.10 3834 3834 MS2 16/20 Linfeng_20130204_CTCF_1.raw High DINTFVGTPVEK Unambiguous 3 1 P46013-2 CID 1.0000 0.0000 1 1 535 3.19 0.00 0 6 50 2 660.34564 1319.68401 -0.16 40.91 3303 3303 MS2 16/22 Linfeng_20130204_CTCF_1.raw High QILDSAASLTGSK Unambiguous 3 1 P46013-2 CID 1.0000 0.0000 1 1 498 3.10 0.00 0 16 50 2 645.84937 1290.69145 1.10 37.70 2972 2972 MS2 14/24 Linfeng_20130204_CTCF_1.raw High VGVKEELLAVGK Unambiguous 3 1 P46013-2 CID 1.0000 0.0000 1 1 193 2.92 0.00 1 29 50 3 414.58792 1241.74921 2.23 37.99 3001 3001 MS2 19/44 Linfeng_20130204_CTCF_1.raw High LDLLGNLPGSK Unambiguous 3 1 P46013-2 CID 1.0000 0.0000 1 1 216 2.77 0.00 0 22 50 2 563.82666 1126.64604 -0.59 50.36 4300 4300 MS2 17/20 Linfeng_20130204_CTCF_1.raw High MPcQSLQPEPINTPTHTK Unambiguous 3 1 P46013-2 C3(Carbamidomethyl) CID 1.0000 0.0000 1 1 502 2.62 0.00 0 4 50 3 693.67120 2078.99906 -0.38 31.76 2377 2377 MS2 23/68 Linfeng_20130204_CTCF_1.raw High LDLTENLTGSK Unambiguous 3 1 P46013-2 CID 1.0000 0.0000 1 1 517 2.45 0.00 0 21 50 2 595.81616 1190.62505 -1.10 39.76 3138 3138 MS2 14/20 Linfeng_20130204_CTCF_2.raw High AQSLVISPPAPSPR Unambiguous 3 1 P46013-2 CID 1.0000 0.0000 1 1 359 2.37 0.00 0 9 50 2 710.40204 1419.79680 0.91 38.39 3041 3041 MS2 11/26 Linfeng_20130204_CTCF_1.raw Medium SPQPDPVGTPTIFKPQSK Unambiguous 3 1 P46013-2 CID 1.0000 0.0000 1 1 414 2.34 0.00 1 20 50 3 642.01099 1924.01841 0.45 38.57 3060 3060 MS2 15/68 Linfeng_20130204_CTCF_1.raw High ALEDLAGFK Unambiguous 3 1 P46013-2 CID 1.0000 0.0000 1 1 506 2.22 0.00 0 31 50 2 482.26038 963.51348 -1.20 43.36 3554 3554 MS2 15/16 Linfeng_20130204_CTCF_1.raw High NINTFVETPVQK Unambiguous 3 1 P46013-2 CID 1.0000 0.0000 1 1 555 2.20 0.00 0 49 50 2 695.37292 1389.73857 0.91 39.24 3084 3084 MS2 12/22 Linfeng_20130204_CTCF_2.raw Q02880-2 Isoform Beta-1 of DNA topoisomerase 2-beta OS=Homo sapiens GN=TOP2B - [TOP2B_HUMAN] 7.16 3 4 10 14 8.62 2.28 3 3 30.78 7.16 10 11 1621 182.5 8.06 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High IFDEILVNAADNK Unambiguous 11 2 P11388;Q02880-2 CID 1.0000 0.0000 1 1 591 3.74 0.00 0 19 50 2 731.38641 1461.76555 4.85 50.38 4279 4279 MS2 19/24 Linfeng_20130204_CTCF_2.raw High IFDEILVNAADNK Unambiguous 11 2 P11388;Q02880-2 CID 1.0000 0.0000 1 1 623 3.38 0.00 0 30 46 2 731.38379 1461.76030 1.26 50.30 4726 4726 MS2 22/24 Linfeng_20130201_rIgG_2.raw High QImENAEINNIIK Unambiguous 11 2 P11388;Q02880-2 M3(Oxidation) CID 1.0000 0.0000 1 1 566 3.30 0.00 0 6 50 2 773.40118 1545.79509 0.58 42.39 3409 3409 MS2 17/24 Linfeng_20130204_CTCF_2.raw High LQLEETmPSPYGR Unambiguous 2 1 Q02880-2 M7(Oxidation) CID 1.0000 0.0000 1 1 326 3.04 0.00 0 4 50 2 768.87109 1536.73491 -0.93 35.16 2673 2673 MS2 16/24 Linfeng_20130204_CTCF_2.raw High ELILFSNSDNER Unambiguous 11 2 P11388;Q02880-2 CID 1.0000 0.0000 1 1 466 3.00 0.00 0 13 15 2 718.85730 1436.70732 3.94 47.66 3967 3967 MS2 19/22 Linfeng_20130204_CTCF_2.raw High NTVEITELPVR Unambiguous 3 1 Q02880-2 CID 1.0000 0.0000 1 1 369 3.00 0.00 0 23 50 2 635.85352 1270.69975 -0.35 42.81 3451 3451 MS2 16/20 Linfeng_20130204_CTCF_2.raw High KEWLTNFmEDR Unambiguous 11 2 P11388;Q02880-2 M8(Oxidation) CID 1.0000 0.0000 1 1 276 2.93 0.00 1 24 50 3 495.56635 1484.68448 0.38 41.26 3292 3292 MS2 15/40 Linfeng_20130204_CTCF_2.raw High TPALISDYKEYHTDTTVK Unambiguous 3 1 Q02880-2 CID 1.0000 0.0000 1 1 576 2.84 0.00 1 18 50 3 694.68390 2082.03714 -0.91 36.70 2826 2826 MS2 20/68 Linfeng_20130204_CTCF_2.raw High NTVEITELPVR Unambiguous 3 1 Q02880-2 CID 1.0000 0.0000 1 1 392 2.77 0.00 0 29 50 2 635.85394 1270.70061 0.32 42.82 3891 3891 MS2 17/20 Linfeng_20130201_rIgG_2.raw High IFDEILVNAADNK Unambiguous 11 2 P11388;Q02880-2 CID 1.0000 0.0000 1 1 608 2.61 0.00 0 7 50 3 487.92395 1461.75730 -0.80 50.48 4289 4289 MS2 23/48 Linfeng_20130204_CTCF_2.raw High QImENAEINNIIK Unambiguous 11 2 P11388;Q02880-2 M3(Oxidation) CID 1.0000 0.0000 1 1 530 2.46 0.00 0 6 50 2 773.40216 1545.79704 1.84 42.32 3839 3839 MS2 17/24 Linfeng_20130201_rIgG_2.raw High EVTFVPGLYK Unambiguous 11 2 P11388;Q02880-2 CID 1.0000 0.0000 1 1 348 2.21 0.00 0 6 46 2 576.81921 1152.63115 1.01 48.00 4005 4005 MS2 14/18 Linfeng_20130204_CTCF_2.raw High YGVFPLR Unambiguous 11 2 P11388;Q02880-2 CID 1.0000 0.0000 1 1 311 2.07 0.00 0 11 50 2 426.24222 851.47716 -0.32 45.06 3687 3687 MS2 10/12 Linfeng_20130204_CTCF_2.raw High SYVDLYVK Unambiguous 3 1 Q02880-2 CID 1.0000 0.0000 1 1 477 2.04 0.00 0 8 50 2 493.76282 986.51836 -1.00 39.91 3154 3154 MS2 13/14 Linfeng_20130204_CTCF_2.raw Q13835-2 Isoform 1 of Plakophilin-1 OS=Homo sapiens GN=PKP1 - [PKP1_HUMAN] 6.89 2 4 4 4 12.47 6.89 4 4 726 80.4 8.97 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High GSMYDGLADNYNYGTTSR Unambiguous 2 1 Q13835-2 CID 1.0000 0.0000 1 1 39 4.40 0.00 0 6 50 2 992.92114 1984.83501 0.41 41.54 3026 3026 MS2 23/34 Linfeng_20130204_CTCF_6.raw High VMGNQVFPEVTR Unambiguous 2 1 Q13835-2 CID 1.0000 0.0000 1 1 482 3.05 0.00 0 23 50 2 688.85455 1376.70183 1.93 41.91 3066 3066 MS2 17/22 Linfeng_20130204_CTCF_6.raw High FSSYSQMENWSR Unambiguous 2 1 Q13835-2 CID 1.0000 0.0000 1 1 75 2.83 0.00 0 18 50 2 761.32599 1521.64470 1.28 42.03 3078 3078 MS2 17/22 Linfeng_20130204_CTCF_6.raw High TYLNLMGK Unambiguous 2 1 Q13835-2 CID 1.0000 0.0000 1 1 417 2.20 0.00 0 10 50 2 470.25272 939.49816 1.39 42.10 3085 3085 MS2 13/14 Linfeng_20130204_CTCF_6.raw B4DK30 116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens GN=EFTUD2 PE=2 SV=1 - [B4DK30_HUMAN] 6.72 2 5 5 5 0.00 15.84 6.72 5 5 937 105.3 5.22 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High ILAQVVGDVDTSLPR Unambiguous 2 1 B4DK30 CID 1.0000 0.0000 1 1 278 4.20 0.00 0 13 50 2 791.94586 1582.88445 2.82 50.82 3991 3991 MS2 22/28 Linfeng_20130204_CTCF_3.raw High ILDAVVAQEPLHR Unambiguous 2 1 B4DK30 CID 1.0000 0.0000 1 1 368 3.46 0.00 0 8 50 3 487.61197 1460.82135 -0.48 39.08 2771 2771 MS2 26/48 Linfeng_20130204_CTCF_3.raw High IAVEPVNPSELPK Unambiguous 2 1 B4DK30 CID 1.0000 0.0000 1 1 312 3.26 0.00 0 3 50 2 696.88782 1392.76836 -3.61 42.24 3096 3096 MS2 17/24 Linfeng_20130204_CTCF_3.raw High STPVTVVLPDTK Unambiguous 2 1 B4DK30 CID 1.0000 0.0000 1 1 448 2.82 0.00 0 23 50 2 628.85748 1256.70769 -1.60 40.41 2908 2908 MS2 14/22 Linfeng_20130204_CTCF_3.raw High EGPLcDELIR Unambiguous 2 1 B4DK30 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 430 2.09 0.00 0 28 50 2 601.29956 1201.59184 3.02 42.54 3127 3127 MS2 10/18 Linfeng_20130204_CTCF_3.raw P13010 X-ray repair cross-complementing protein 5 OS=Homo sapiens GN=XRCC5 PE=1 SV=3 - [XRCC5_HUMAN] 6.56 1 5 5 5 13.40 6.56 5 5 732 82.7 5.81 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High HIEIFTDLSSR Unambiguous 1 1 P13010 CID 1.0000 0.0000 1 1 495 3.23 0.00 0 36 50 2 659.34589 1317.68450 3.57 44.74 3350 3350 MS2 17/20 Linfeng_20130204_CTCF_4.raw High YGSDIVPFSK Unambiguous 1 1 P13010 CID 1.0000 0.0000 1 1 365 3.06 0.00 0 22 50 2 556.78522 1112.56316 0.78 41.01 2967 2967 MS2 14/18 Linfeng_20130204_CTCF_4.raw High LTIGSNLSIR Unambiguous 1 1 P13010 CID 1.0000 0.0000 1 1 355 2.87 0.00 0 17 50 2 537.32123 1073.63518 3.54 43.15 3187 3187 MS2 16/18 Linfeng_20130204_CTCF_4.raw High VITMFVQR Unambiguous 1 1 P13010 CID 1.0000 0.0000 1 1 356 2.22 0.00 0 10 50 2 497.28186 993.55644 1.40 41.76 3044 3044 MS2 12/14 Linfeng_20130204_CTCF_4.raw High FFMGNQVLK Unambiguous 1 1 P13010 CID 1.0000 0.0000 1 1 360 2.02 0.00 0 34 50 2 542.28711 1083.56694 1.22 45.99 3478 3478 MS2 13/16 Linfeng_20130204_CTCF_4.raw Q9BUJ2-3 Isoform 3 of Heterogeneous nuclear ribonucleoprotein U-like protein 1 OS=Homo sapiens GN=HNRNPUL1 - [HNRL1_HUMAN] 6.52 5 4 4 4 12.02 6.52 4 4 752 84.4 9.14 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High NYILDQTNVYGSAQR Unambiguous 5 1 Q9BUJ2-3 CID 1.0000 0.0000 1 1 421 3.89 0.00 0 0 50 2 871.43152 1741.85576 3.06 41.31 3000 3000 MS2 24/28 Linfeng_20130204_CTCF_3.raw High QNQFYDTQVIK Unambiguous 5 1 Q9BUJ2-3 CID 1.0000 0.0000 1 1 420 2.83 0.00 0 41 50 2 692.34918 1383.69109 0.54 37.66 2628 2628 MS2 12/20 Linfeng_20130204_CTCF_3.raw High NcAVEFNFGQR Unambiguous 5 1 Q9BUJ2-3 C2(Carbamidomethyl) CID 1.0000 0.0000 1 1 194 2.68 0.00 0 39 50 2 671.30237 1341.59746 -2.27 43.24 3198 3198 MS2 17/20 Linfeng_20130204_CTCF_3.raw High YNILGTNAImDK Unambiguous 5 1 Q9BUJ2-3 M10(Oxidation) CID 1.0000 0.0000 1 1 481 2.62 0.00 0 28 50 2 684.84479 1368.68230 -0.39 42.29 3101 3101 MS2 16/22 Linfeng_20130204_CTCF_3.raw Q9NSB2 "Keratin, type II cuticular Hb4 OS=Homo sapiens GN=KRT84 PE=1 SV=2 - [KRT84_HUMAN]" 6.50 1 2 3 12 0.00 31.86 6.50 3 12 600 64.8 7.56 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High VGGVGVPAAPSITAVTVNK Unambiguous 1 1 Q9NSB2 CID 1.0000 0.0000 1 1 125 3.43 0.00 0 10 38 2 868.99927 1736.99126 0.37 44.92 3387 3387 MS2 19/36 Linfeng_20130204_CTCF_6.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 343 3.04 0.00 1 56 50 2 541.80585 1082.60442 4.67 39.54 2816 2816 MS2 13/16 Linfeng_20130204_CTCF_4.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 325 2.81 0.00 1 10 50 2 541.80310 1082.59892 -0.40 38.88 3045 3045 MS2 15/16 Linfeng_20130204_CTCF_2.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 370 2.76 0.00 1 11 17 2 541.80353 1082.59978 0.39 39.08 2759 2759 MS2 15/16 Linfeng_20130204_CTCF_6.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 358 2.68 0.00 1 50 50 2 541.80542 1082.60356 3.88 39.43 3002 3002 MS2 15/16 Linfeng_20130204_CTCF_7.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 367 2.67 0.00 1 35 50 2 541.80475 1082.60222 2.64 39.63 3049 3049 MS2 15/16 Linfeng_20130204_CTCF_9.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 367 2.61 0.00 1 28 50 2 541.80426 1082.60124 1.74 39.63 2995 2995 MS2 15/16 Linfeng_20130204_CTCF_10.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 356 2.58 0.00 1 19 47 2 541.80518 1082.60307 3.43 40.09 2869 2869 MS2 15/16 Linfeng_20130204_CTCF_6.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 325 2.49 0.00 1 33 50 2 541.80322 1082.59917 -0.18 39.27 2988 2988 MS2 15/16 Linfeng_20130204_CTCF_8.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 344 2.34 0.00 1 29 50 2 541.80499 1082.60271 3.09 39.44 2810 2810 MS2 14/16 Linfeng_20130204_CTCF_3.raw High SVITFGSYSPR Unambiguous 1 1 Q9NSB2 CID 1.0000 0.0000 1 1 359 2.23 0.00 0 25 50 2 607.31512 1213.62297 1.46 43.74 3259 3259 MS2 15/20 Linfeng_20130204_CTCF_6.raw High FASFIDKVR Unambiguous 26 8 P35908;Q7Z794;P13647;P02538;P04259;P48668;H9KV51;Q9NSB2 CID 1.0000 0.0000 1 1 367 2.21 0.00 1 55 50 2 541.80396 1082.60063 1.18 38.89 3093 3093 MS2 13/16 Linfeng_20130204_CTCF_1.raw Q8WVV4 Protein POF1B OS=Homo sapiens GN=POF1B PE=1 SV=3 - [POF1B_HUMAN] 6.45 2 3 3 3 8.07 6.45 3 3 589 68.0 6.32 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High GSHFFPGNNVIYEK Unambiguous 2 1 Q8WVV4 CID 1.0000 0.0000 1 1 461 3.37 0.00 0 5 24 3 536.93097 1608.77835 -1.38 40.85 2952 2952 MS2 24/52 Linfeng_20130204_CTCF_6.raw Medium MDEIGNHYTEMVK Unambiguous 2 1 Q8WVV4 CID 1.0000 0.0000 1 1 170 2.38 0.00 0 42 50 3 522.90271 1566.69358 0.52 35.38 2379 2379 MS2 23/48 Linfeng_20130204_CTCF_6.raw High VVQALDPFNSR Unambiguous 2 1 Q8WVV4 CID 1.0000 0.0000 1 1 546 2.31 0.00 0 49 38 2 623.33533 1245.66338 3.78 44.61 3354 3354 MS2 13/20 Linfeng_20130204_CTCF_6.raw P17480-2 Isoform UBF2 of Nucleolar transcription factor 1 OS=Homo sapiens GN=UBTF - [UBF1_HUMAN] 6.33 3 4 4 5 0.00 12.10 6.33 4 5 727 84.9 5.55 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High HPELNISEEGITK Unambiguous 3 1 P17480-2 CID 1.0000 0.0000 1 1 518 2.64 0.00 0 0 50 2 733.87891 1466.75054 1.31 34.78 2342 2342 MS2 15/24 Linfeng_20130204_CTCF_3.raw Medium HPELNISEEGITK Unambiguous 3 1 P17480-2 CID 1.0000 0.0000 1 1 563 2.44 0.00 0 23 50 3 489.58746 1466.74784 -0.53 34.84 2348 2348 MS2 19/48 Linfeng_20130204_CTCF_3.raw High FLESLPEEEQQR Unambiguous 3 1 P17480-2 CID 1.0000 0.0000 1 1 392 2.40 0.00 0 11 50 2 752.86804 1504.72881 0.62 38.59 2721 2721 MS2 16/22 Linfeng_20130204_CTCF_3.raw Medium LHPEMSNLDLTK Unambiguous 3 1 P17480-2 CID 1.0000 0.0000 1 1 502 2.31 0.00 0 26 50 3 466.57452 1397.70902 -0.27 36.97 2559 2559 MS2 12/44 Linfeng_20130204_CTCF_3.raw High WVEISNEVR Unambiguous 3 1 P17480-2 CID 1.0000 0.0000 1 1 485 2.31 0.00 0 25 50 2 566.29413 1131.58098 1.44 38.27 2689 2689 MS2 12/16 Linfeng_20130204_CTCF_3.raw B4DZP5 Uncharacterized protein OS=Homo sapiens GN=DDB1 PE=2 SV=1 - [B4DZP5_HUMAN] 6.17 4 3 3 3 7.93 6.17 3 3 826 91.9 5.30 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High IEVQDTSGGTTALRPSASTQALSSSVSSSK Unambiguous 4 1 B4DZP5 CID 1.0000 0.0000 1 1 425 3.22 0.00 1 0 50 3 984.82855 2952.47110 -1.57 37.04 2566 2566 MS2 28/116 Linfeng_20130204_CTCF_3.raw High VTLGTQPTVLR Unambiguous 4 1 B4DZP5 CID 1.0000 0.0000 1 1 315 2.68 0.00 0 22 50 2 592.85437 1184.70146 1.40 36.63 2524 2524 MS2 16/20 Linfeng_20130204_CTCF_3.raw High IVVFQYSDGK Unambiguous 4 1 B4DZP5 CID 1.0000 0.0000 1 1 423 2.03 0.00 0 34 50 2 578.30615 1155.60503 0.46 40.31 2898 2898 MS2 11/18 Linfeng_20130204_CTCF_3.raw F5H3H6 ATP-dependent RNA helicase DDX50 OS=Homo sapiens GN=DDX50 PE=4 SV=1 - [F5H3H6_HUMAN] 6.05 2 2 3 3 11.33 6.05 3 3 711 79.9 8.81 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High LPEIEEYYDGNTSSNSR Unambiguous 2 1 F5H3H6 CID 1.0000 0.0000 1 1 114 5.41 0.00 0 0 50 2 987.43951 1973.87175 -0.31 42.87 3158 3158 MS2 23/32 Linfeng_20130204_CTCF_4.raw High EGAFSNFPISEETIK Unambiguous 4 2 Q9NR30-2;F5H3H6 CID 1.0000 0.0000 1 1 397 3.66 0.00 0 12 14 2 834.91010 1668.81291 0.77 50.86 3996 3996 MS2 20/28 Linfeng_20130204_CTCF_3.raw High VGVPSTMDLVK Unambiguous 2 1 F5H3H6 CID 1.0000 0.0000 1 1 549 2.25 0.00 0 17 50 2 573.31470 1145.62212 -1.24 43.27 3199 3199 MS2 14/20 Linfeng_20130204_CTCF_4.raw Q03252 Lamin-B2 OS=Homo sapiens GN=LMNB2 PE=1 SV=3 - [LMNB2_HUMAN] 5.83 1 3 3 3 8.96 5.83 3 3 600 67.6 5.35 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High TVLVNADGEEVAMR Unambiguous 1 1 Q03252 CID 1.0000 0.0000 1 1 505 3.33 0.00 0 20 50 2 752.37775 1503.74822 0.64 38.22 2680 2680 MS2 19/26 Linfeng_20130204_CTCF_4.raw High ALYESELADAR Unambiguous 1 1 Q03252 CID 1.0000 0.0000 1 1 403 2.88 0.00 0 28 50 2 619.30658 1237.60588 -0.06 36.49 2506 2506 MS2 17/20 Linfeng_20130204_CTCF_4.raw High GLESDVAELR Unambiguous 1 1 Q03252 CID 1.0000 0.0000 1 1 437 2.74 0.00 0 27 50 2 544.78284 1088.55840 0.10 41.04 2970 2970 MS2 16/18 Linfeng_20130204_CTCF_4.raw Q08188 Protein-glutamine gamma-glutamyltransferase E OS=Homo sapiens GN=TGM3 PE=1 SV=4 - [TGM3_HUMAN] 5.77 1 3 3 3 8.46 5.77 3 3 693 76.6 5.86 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High SDLGPSYGGWQVLDATPQER Unambiguous 1 1 Q08188 CID 1.0000 0.0000 1 1 420 3.45 0.00 0 9 50 3 726.01843 2176.04074 4.65 52.04 4131 4131 MS2 21/76 Linfeng_20130204_CTCF_6.raw High ITWLYDNTTGK Unambiguous 1 1 Q08188 CID 1.0000 0.0000 1 1 380 2.70 0.00 0 15 49 2 656.33295 1311.65862 0.48 45.55 3454 3454 MS2 16/20 Linfeng_20130204_CTCF_6.raw High VRFDILPSR Unambiguous 1 1 Q08188 CID 1.0000 0.0000 1 1 363 2.30 0.00 1 24 29 2 551.82196 1102.63664 -0.15 43.39 3221 3221 MS2 13/16 Linfeng_20130204_CTCF_6.raw B7Z7A3 Nucleolar GTP-binding protein 1 OS=Homo sapiens GN=GTPBP4 PE=2 SV=1 - [B7Z7A3_HUMAN] 5.62 2 3 3 3 7.59 5.62 3 3 587 68.2 9.35 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High LALGQINIAK Unambiguous 2 1 B7Z7A3 CID 1.0000 0.0000 1 1 148 3.02 0.00 0 21 50 2 520.82745 1040.64763 1.27 45.00 3377 3377 MS2 16/18 Linfeng_20130204_CTCF_4.raw High ADVDVQPYAFTTK Unambiguous 2 1 B7Z7A3 CID 1.0000 0.0000 1 1 343 2.46 0.00 0 0 50 2 727.86298 1454.71868 1.67 41.47 3013 3013 MS2 16/24 Linfeng_20130204_CTCF_4.raw High QSLEYLEQVR Unambiguous 2 1 B7Z7A3 CID 1.0000 0.0000 1 1 536 2.11 0.00 0 25 50 2 632.82916 1264.65105 -1.73 41.62 3029 3029 MS2 11/18 Linfeng_20130204_CTCF_4.raw F5H6B4 Inter-alpha-trypsin inhibitor heavy chain H3 OS=Homo sapiens GN=ITIH3 PE=4 SV=1 - [F5H6B4_HUMAN] 5.62 6 3 3 4 9.98 5.62 3 4 658 73.6 6.01 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High FTVSVNVAAGSK Unambiguous 6 1 F5H6B4 CID 1.0000 0.0000 1 1 500 2.84 0.00 0 23 50 2 590.32190 1179.63652 -0.30 38.64 2723 2723 MS2 19/22 Linfeng_20130204_CTCF_4.raw High EHLVQATPENLQEAR Unambiguous 6 1 F5H6B4 CID 1.0000 0.0000 1 1 612 2.58 0.00 0 19 50 3 578.96442 1734.87870 0.97 31.33 1997 1997 MS2 22/56 Linfeng_20130204_CTCF_4.raw High FTVSVNVAAGSK Unambiguous 6 1 F5H6B4 CID 1.0000 0.0000 1 1 499 2.34 0.00 0 20 50 2 590.32233 1179.63738 0.43 37.59 2617 2617 MS2 15/22 Linfeng_20130204_CTCF_4.raw High EVSFDVELPK Unambiguous 6 1 F5H6B4 CID 1.0000 0.0000 1 1 618 2.22 0.00 0 25 50 2 581.80566 1162.60405 4.27 48.75 3768 3768 MS2 10/18 Linfeng_20130204_CTCF_4.raw P43243 Matrin-3 OS=Homo sapiens GN=MATR3 PE=1 SV=2 - [MATR3_HUMAN] 5.55 2 3 3 4 0.00 10.60 5.55 3 4 847 94.6 6.25 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High LcSLFYTNEEVAK Unambiguous 2 1 P43243 C2(Carbamidomethyl) CID 1.0000 0.0000 1 1 386 2.96 0.00 0 10 50 2 787.38477 1573.76225 3.51 46.03 3484 3484 MS2 14/24 Linfeng_20130204_CTCF_3.raw Medium VIHLSNLPHSGYSDSAVLK Unambiguous 2 1 P43243 CID 1.0000 0.0000 1 1 443 2.89 0.00 0 10 50 4 510.02478 2037.07729 0.42 39.85 2852 2852 MS2 34/108 Linfeng_20130204_CTCF_3.raw Medium VIHLSNLPHSGYSDSAVLK Unambiguous 2 1 P43243 CID 1.0000 0.0000 1 1 432 2.43 0.00 0 5 50 3 679.69751 2037.07798 0.76 40.00 2867 2867 MS2 19/72 Linfeng_20130204_CTCF_3.raw Medium GPSLNPVLDYDHGSR Unambiguous 2 1 P43243 CID 1.0000 0.0000 1 1 460 2.32 0.00 0 19 50 3 542.93512 1626.79081 2.26 39.64 2830 2830 MS2 21/56 Linfeng_20130204_CTCF_3.raw Q86U86-4 Isoform 4 of Protein polybromo-1 OS=Homo sapiens GN=PBRM1 - [PB1_HUMAN] 5.50 11 7 7 7 20.65 5.50 7 7 1582 181.0 6.87 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High YIEGLSAESNSISK Unambiguous 8 1 Q86U86-4 CID 1.0000 0.0000 1 1 408 4.08 0.00 0 30 50 2 749.37488 1497.74248 -0.47 35.58 2714 2714 MS2 23/26 Linfeng_20130204_CTCF_2.raw High HYNEEGSQVYNDAHILEK Unambiguous 11 1 Q86U86-4 CID 1.0000 0.0000 1 1 290 3.78 0.00 0 16 50 3 715.99969 2145.98453 0.41 35.33 2689 2689 MS2 24/68 Linfeng_20130204_CTCF_2.raw High AQHPDYSFGELSR Unambiguous 9 1 Q86U86-4 CID 1.0000 0.0000 1 1 253 2.79 0.00 0 33 50 3 502.90350 1506.69596 -0.85 36.41 2797 2797 MS2 18/48 Linfeng_20130204_CTCF_2.raw High VVDDEIYYFR Unambiguous 9 1 Q86U86-4 CID 1.0000 0.0000 1 1 359 2.68 0.00 0 29 49 2 659.82062 1318.63396 1.92 48.19 4026 4026 MS2 16/18 Linfeng_20130204_CTCF_2.raw High LISELFQK Unambiguous 11 1 Q86U86-4 CID 1.0000 0.0000 1 1 391 2.60 0.00 0 5 50 2 489.28781 977.56835 1.73 46.23 3811 3811 MS2 13/14 Linfeng_20130204_CTCF_2.raw High MPISLQQIR Unambiguous 11 1 Q86U86-4 CID 1.0000 0.0000 1 1 455 2.37 0.00 0 5 50 2 543.31116 1085.61504 1.30 43.61 3534 3534 MS2 15/16 Linfeng_20130204_CTCF_2.raw High ELGPLPDDDDMASPK Unambiguous 11 1 Q86U86-4 CID 1.0000 0.0000 1 1 179 2.35 0.00 0 12 50 2 800.36450 1599.72173 0.59 40.74 3238 3238 MS2 15/28 Linfeng_20130204_CTCF_2.raw E7ETA6 Pericentriolar material 1 protein OS=Homo sapiens GN=PCM1 PE=4 SV=1 - [E7ETA6_HUMAN] 5.41 7 7 7 8 23.42 5.41 7 8 2016 227.6 5.03 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High IIEDGDGAGAETPVIENR Unambiguous 1 1 E7ETA6 CID 1.0000 0.0000 1 1 355 4.23 0.00 0 0 50 2 928.45508 1855.90288 -0.24 34.18 2620 2620 MS2 25/34 Linfeng_20130204_CTCF_1.raw High NPQVASTWNEVNSHSNAQcVSNNR Unambiguous 5 1 E7ETA6 C19(Carbamidomethyl) CID 1.0000 0.0000 1 1 202 3.12 0.00 0 0 50 3 905.07751 2713.21799 1.75 33.62 2564 2564 MS2 21/92 Linfeng_20130204_CTCF_1.raw High SSQQPVSEVSTIPcPR Unambiguous 7 1 E7ETA6 C14(Carbamidomethyl) CID 1.0000 0.0000 1 1 349 3.06 0.00 0 0 50 2 886.43555 1771.86382 -0.33 35.32 2732 2732 MS2 21/30 Linfeng_20130204_CTCF_1.raw High ESPPTVDSTQQPNPLPLR Unambiguous 5 1 E7ETA6 CID 1.0000 0.0000 1 1 439 2.92 0.00 0 0 50 2 988.51007 1976.01286 2.24 40.28 3238 3238 MS2 15/34 Linfeng_20130204_CTCF_1.raw High EQWQEQINQLK Unambiguous 5 1 E7ETA6 CID 1.0000 0.0000 1 1 439 2.91 0.00 0 5 50 2 722.36505 1443.72283 0.07 41.45 3359 3359 MS2 14/20 Linfeng_20130204_CTCF_1.raw High LMQDLDNNSITVK Unambiguous 7 1 E7ETA6 CID 1.0000 0.0000 1 1 555 2.62 0.00 0 13 50 2 745.87958 1490.75188 -0.08 38.51 3053 3053 MS2 16/24 Linfeng_20130204_CTCF_1.raw High ESPPTVDSTQQPNPLPLR Unambiguous 5 1 E7ETA6 CID 1.0000 0.0000 1 1 412 2.31 0.00 0 0 50 2 988.51080 1976.01433 2.99 40.09 3218 3218 MS2 14/34 Linfeng_20130204_CTCF_1.raw High INFSDLDQR Unambiguous 5 1 E7ETA6 CID 1.0000 0.0000 1 1 508 2.24 0.00 0 4 50 2 554.27527 1107.54326 0.27 40.47 3257 3257 MS2 14/16 Linfeng_20130204_CTCF_1.raw Q9BVP2-2 Isoform 2 of Guanine nucleotide-binding protein-like 3 OS=Homo sapiens GN=GNL3 - [GNL3_HUMAN] 5.21 2 3 3 3 8.15 5.21 3 3 537 60.5 8.79 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High VGVIGFPNVGK Unambiguous 2 1 Q9BVP2-2 CID 1.0000 0.0000 1 1 485 3.00 0.00 0 6 50 2 543.81885 1086.63042 -0.23 47.27 3612 3612 MS2 18/20 Linfeng_20130204_CTCF_4.raw High LVLILNK Unambiguous 2 1 Q9BVP2-2 CID 1.0000 0.0000 1 1 49 2.76 0.00 0 8 50 2 406.78296 812.55864 -2.22 43.07 3179 3179 MS2 11/12 Linfeng_20130204_CTCF_4.raw High SGFNLEELEK Unambiguous 2 1 Q9BVP2-2 CID 1.0000 0.0000 1 1 514 2.39 0.00 0 18 50 2 583.29089 1165.57451 0.78 48.07 3696 3696 MS2 15/18 Linfeng_20130204_CTCF_4.raw P11387 DNA topoisomerase 1 OS=Homo sapiens GN=TOP1 PE=1 SV=2 - [TOP1_HUMAN] 5.10 1 3 3 4 13.08 5.10 3 4 765 90.7 9.31 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High TYNASITLQQQLK Unambiguous 1 1 P11387 CID 1.0000 0.0000 1 1 421 3.98 0.00 0 27 50 2 754.41113 1507.81499 2.30 40.33 2897 2897 MS2 17/24 Linfeng_20130204_CTCF_4.raw High GPVFAPPYEPLPENVK Unambiguous 1 1 P11387 CID 1.0000 0.0000 1 1 448 3.45 0.00 0 2 50 2 877.46625 1753.92522 5.24 49.84 3889 3889 MS2 17/30 Linfeng_20130204_CTCF_3.raw High TYNASITLQQQLK Unambiguous 1 1 P11387 CID 1.0000 0.0000 1 1 423 2.88 0.00 0 36 50 2 754.41052 1507.81377 1.49 39.99 2866 2866 MS2 16/24 Linfeng_20130204_CTCF_3.raw High AEEVATFFAK Unambiguous 1 1 P11387 CID 1.0000 0.0000 1 1 418 2.76 0.00 0 34 50 2 556.78503 1112.56279 0.43 44.91 3371 3371 MS2 15/18 Linfeng_20130204_CTCF_3.raw Q14690 Protein RRP5 homolog OS=Homo sapiens GN=PDCD11 PE=1 SV=3 - [RRP5_HUMAN] 5.08 2 8 8 8 24.35 5.08 8 8 1871 208.6 8.87 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High VEDPEINSIQDIK Unambiguous 1 1 Q14690 CID 1.0000 0.0000 1 1 463 3.61 0.00 0 26 50 2 750.38367 1499.76006 0.80 40.41 3204 3204 MS2 20/24 Linfeng_20130204_CTCF_2.raw High LGPSVVGLAR Unambiguous 1 1 Q14690 CID 1.0000 0.0000 1 1 111 3.47 0.00 0 18 50 2 484.79770 968.58812 -0.70 38.79 3036 3036 MS2 17/18 Linfeng_20130204_CTCF_2.raw High FVTSTSDHFVEGQTVAAK Unambiguous 2 1 Q14690 CID 1.0000 0.0000 1 1 471 3.40 0.00 0 15 50 3 641.98615 1923.94388 -0.46 33.44 2504 2504 MS2 27/68 Linfeng_20130204_CTCF_2.raw High IEEALMDPGRQPESADDFDR Unambiguous 1 1 Q14690 CID 1.0000 0.0000 1 1 215 3.20 0.00 1 27 50 3 764.34534 2291.02146 -1.37 40.10 3173 3173 MS2 24/76 Linfeng_20130204_CTCF_2.raw High VGQYLNcIVEK Unambiguous 2 1 Q14690 C7(Carbamidomethyl) CID 1.0000 0.0000 1 1 487 3.15 0.00 0 36 50 2 661.84326 1322.67925 1.44 39.95 3158 3158 MS2 15/20 Linfeng_20130204_CTCF_2.raw High TSIIEAQYLR Unambiguous 2 1 Q14690 CID 1.0000 0.0000 1 1 351 2.67 0.00 0 25 50 2 597.32928 1193.65129 -1.01 42.83 3453 3453 MS2 16/18 Linfeng_20130204_CTCF_2.raw Medium SKVEDPEINSIQDIK Unambiguous 1 1 Q14690 CID 1.0000 0.0000 1 1 525 2.45 0.00 1 14 50 3 572.29938 1714.88358 -1.33 36.60 2816 2816 MS2 16/56 Linfeng_20130204_CTCF_2.raw High FYNNVQGLVPK Unambiguous 2 1 Q14690 CID 1.0000 0.0000 1 1 517 2.40 0.00 0 37 50 2 639.84607 1278.68486 0.56 43.41 3512 3512 MS2 15/20 Linfeng_20130204_CTCF_2.raw Q14980-2 Isoform 2 of Nuclear mitotic apparatus protein 1 OS=Homo sapiens GN=NUMA1 - [NUMA1_HUMAN] 4.85 6 7 7 8 0.00 21.59 4.85 7 8 2101 236.4 5.80 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High SLEAQVAHADQQLR Unambiguous 5 1 Q14980-2 CID 1.0000 0.0000 1 1 523 3.93 0.00 0 12 50 2 783.40497 1565.80266 -0.29 36.39 2840 2840 MS2 21/26 Linfeng_20130204_CTCF_1.raw High PSLSLGTITDEEmK Unambiguous 5 1 Q14980-2 M13(Oxidation) CID 1.0000 0.0000 1 1 422 3.04 0.00 0 8 50 2 768.87628 1536.74529 -0.62 44.14 3635 3635 MS2 15/26 Linfeng_20130204_CTCF_1.raw High KLDVEEPDSANSSFYSTR Unambiguous 5 1 Q14980-2 CID 1.0000 0.0000 1 1 287 2.70 0.00 1 3 50 3 682.31952 2044.94400 -0.92 36.14 2815 2815 MS2 23/68 Linfeng_20130204_CTCF_1.raw Medium KLDVEEPDSANSSFYSTR Unambiguous 5 1 Q14980-2 CID 1.0000 0.0000 1 1 315 2.50 0.00 1 21 50 3 682.32135 2044.94950 1.77 35.95 2797 2797 MS2 20/68 Linfeng_20130204_CTCF_1.raw High TQPDGTSVPGEPASPISQR Unambiguous 5 1 Q14980-2 CID 1.0000 0.0000 1 1 401 2.42 0.00 0 0 50 2 962.47357 1923.93987 -0.46 32.57 2459 2459 MS2 18/36 Linfeng_20130204_CTCF_1.raw Medium LQQLGEAHQAETEVLR Unambiguous 3 1 Q14980-2 CID 1.0000 0.0000 1 1 583 2.41 0.00 0 23 50 3 607.98608 1821.94370 -0.95 35.85 2786 2786 MS2 20/60 Linfeng_20130204_CTCF_1.raw High INQLSEENGDLSFK Unambiguous 4 1 Q14980-2 CID 1.0000 0.0000 1 1 432 2.35 0.00 0 26 50 2 797.38751 1593.76775 -4.90 39.98 3206 3206 MS2 13/26 Linfeng_20130204_CTCF_1.raw High ERDAALK Unambiguous 3 1 Q14980-2 CID 1.0000 0.0000 1 2 641 2.23 0.00 1 0 50 2 401.72379 802.44029 -1.87 15.47 331 331 MS2 10/12 Linfeng_20130204_CTCF_1.raw Q8TAQ2-2 Isoform 2 of SWI/SNF complex subunit SMARCC2 OS=Homo sapiens GN=SMARCC2 - [SMRC2_HUMAN] 4.78 4 2 4 4 11.72 4.78 4 4 1130 124.8 5.55 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High YYEAADTVTQFDNVR Unambiguous 4 1 Q8TAQ2-2 CID 1.0000 0.0000 1 1 261 4.16 0.00 0 9 50 2 896.41284 1791.81841 -0.04 43.59 3532 3532 MS2 25/28 Linfeng_20130204_CTCF_2.raw High mKEEVPTALVEAHVR Unambiguous 4 1 Q8TAQ2-2 M1(Oxidation) CID 1.0000 0.0000 1 1 510 2.65 0.00 1 31 50 3 575.63770 1724.89853 -0.89 35.53 2709 2709 MS2 18/56 Linfeng_20130204_CTCF_2.raw High SKTPEIYLAYR Unambiguous 5 2 Q92922;Q8TAQ2-2 CID 1.0000 0.0000 1 1 422 2.64 0.00 1 17 50 3 447.57791 1340.71918 -1.29 38.84 3041 3041 MS2 18/40 Linfeng_20130204_CTCF_2.raw High LNPQEYLTSTAcR Unambiguous 5 2 Q92922;Q8TAQ2-2 C12(Carbamidomethyl) CID 1.0000 0.0000 1 1 414 2.27 0.00 0 19 50 2 776.87341 1552.73955 -1.88 41.97 3365 3365 MS2 14/24 Linfeng_20130204_CTCF_2.raw Q9H8H0 Nucleolar protein 11 OS=Homo sapiens GN=NOL11 PE=1 SV=1 - [NOL11_HUMAN] 4.73 1 3 3 3 8.30 4.73 3 3 719 81.1 6.07 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High IETVISDEEVIK Unambiguous 1 1 Q9H8H0 CID 1.0000 0.0000 1 1 569 3.21 0.00 0 13 50 2 687.87402 1374.74077 3.24 42.34 3104 3104 MS2 18/22 Linfeng_20130204_CTCF_4.raw High IWNNEDVNLDK Unambiguous 1 1 Q9H8H0 CID 1.0000 0.0000 1 1 357 2.75 0.00 0 13 50 2 680.33191 1359.65654 1.88 36.74 2531 2531 MS2 13/20 Linfeng_20130204_CTCF_4.raw High SQISVYSELNK Unambiguous 1 1 Q9H8H0 CID 1.0000 0.0000 1 1 519 2.34 0.00 0 43 50 2 634.33051 1267.65373 0.66 37.93 2651 2651 MS2 13/20 Linfeng_20130204_CTCF_4.raw Q9NW13 RNA-binding protein 28 OS=Homo sapiens GN=RBM28 PE=1 SV=3 - [RBM28_HUMAN] 4.35 1 3 3 3 7.88 4.35 3 3 759 85.7 9.22 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High cLLAASPENEAGGLK Unambiguous 1 1 Q9NW13 C1(Carbamidomethyl) CID 1.0000 0.0000 1 1 471 2.84 0.00 0 10 50 2 765.38525 1529.76323 0.21 38.97 2760 2760 MS2 15/28 Linfeng_20130204_CTCF_3.raw High TVAVDWAVAK Unambiguous 1 1 Q9NW13 CID 1.0000 0.0000 1 1 604 2.64 0.00 0 38 50 2 530.29492 1059.58257 -0.77 40.87 2955 2955 MS2 15/18 Linfeng_20130204_CTCF_3.raw High GFGFVQFK Unambiguous 1 1 Q9NW13 CID 1.0000 0.0000 1 1 356 2.40 0.00 0 32 50 2 465.25085 929.49443 6.91 51.48 4059 4059 MS2 11/14 Linfeng_20130204_CTCF_3.raw Q9UQE7 Structural maintenance of chromosomes protein 3 OS=Homo sapiens GN=SMC3 PE=1 SV=2 - [SMC3_HUMAN] 4.27 1 4 4 4 0.00 11.87 4.27 4 4 1217 141.5 7.18 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High ALEYTIYNQELNETR Unambiguous 1 1 Q9UQE7 CID 1.0000 0.0000 1 1 449 3.82 0.00 0 0 50 2 928.95642 1856.90557 1.63 45.03 3684 3684 MS2 21/28 Linfeng_20130204_CTCF_2.raw High LFYHIVDSDEVSTK Unambiguous 1 1 Q9UQE7 CID 1.0000 0.0000 1 1 486 3.49 0.00 0 14 50 3 551.61017 1652.81595 -0.44 40.79 3243 3243 MS2 21/52 Linfeng_20130204_CTCF_2.raw High DQTIVDPFSSK Unambiguous 1 1 Q9UQE7 CID 1.0000 0.0000 1 1 411 2.37 0.00 0 13 50 2 618.80841 1236.60954 -0.94 44.11 3587 3587 MS2 12/20 Linfeng_20130204_CTCF_2.raw High ELGSLPQEAFEK Unambiguous 1 1 Q9UQE7 CID 1.0000 0.0000 1 1 439 2.19 0.00 0 14 50 2 674.34363 1347.67998 0.62 42.91 3461 3461 MS2 16/22 Linfeng_20130204_CTCF_2.raw E5RFF3 Zinc finger transcription factor Trps1 OS=Homo sapiens GN=TRPS1 PE=4 SV=1 - [E5RFF3_HUMAN] 4.15 4 3 3 3 9.25 4.15 3 3 1035 114.5 7.20 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High LNPEALQAEQLNK Unambiguous 4 1 E5RFF3 CID 1.0000 0.0000 1 1 424 4.05 0.00 0 5 50 2 734.39392 1467.78057 0.21 36.27 2783 2783 MS2 19/24 Linfeng_20130204_CTCF_2.raw High PIYGLAVETK Unambiguous 4 1 E5RFF3 CID 1.0000 0.0000 1 1 362 2.74 0.00 0 43 50 2 545.81049 1090.61370 -0.58 39.62 3123 3123 MS2 15/18 Linfeng_20130204_CTCF_2.raw Medium AGDDTPVGYSVPIKPLDSSR Unambiguous 4 1 E5RFF3 CID 1.0000 0.0000 1 1 544 2.46 0.00 1 9 50 3 692.01959 2074.04422 -0.48 42.32 3401 3401 MS2 21/76 Linfeng_20130204_CTCF_2.raw F8WDZ1 Uncharacterized protein OS=Homo sapiens PE=4 SV=1 - [F8WDZ1_HUMAN] 4.04 4 3 3 4 10.68 4.04 3 4 1040 110.0 4.30 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High LPSLGAGFSQGLK Unambiguous 4 1 F8WDZ1 CID 1.0000 0.0000 1 1 391 3.62 0.00 0 33 26 2 637.85901 1274.71074 0.28 48.47 4058 4058 MS2 20/24 Linfeng_20130204_CTCF_2.raw High GADTAPTLAPEALPSQGEVER Unambiguous 4 1 F8WDZ1 CID 1.0000 0.0000 1 1 432 2.55 0.00 0 3 50 2 1055.02661 2109.04595 -0.01 40.80 3244 3244 MS2 19/40 Linfeng_20130204_CTCF_2.raw Medium GADTAPTLAPEALPSQGEVER Unambiguous 4 1 F8WDZ1 CID 1.0000 0.0000 1 1 518 2.30 0.00 0 31 43 3 703.68726 2109.04721 0.59 40.89 3253 3253 MS2 19/80 Linfeng_20130204_CTCF_2.raw High LASFFLSR Unambiguous 4 1 F8WDZ1 CID 1.0000 0.0000 1 1 292 2.19 0.00 0 4 50 2 470.76633 940.52538 0.27 50.08 4249 4249 MS2 11/14 Linfeng_20130204_CTCF_2.raw F8WCU9 AT-rich interactive domain-containing protein 2 OS=Homo sapiens GN=ARID2 PE=4 SV=1 - [F8WCU9_HUMAN] 3.60 3 3 3 3 9.54 3.60 3 3 1639 175.0 7.44 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High AVVAQHVAPPPGIVEIDSEK Unambiguous 3 1 F8WCU9 CID 1.0000 0.0000 1 1 404 3.89 0.00 0 0 48 3 686.04004 2056.10556 -0.91 41.09 3275 3275 MS2 24/76 Linfeng_20130204_CTCF_2.raw High LGINDIEGQR Unambiguous 3 1 F8WCU9 CID 1.0000 0.0000 1 1 375 3.01 0.00 0 28 50 2 557.79614 1114.58501 -0.15 36.66 2821 2821 MS2 15/18 Linfeng_20130204_CTCF_2.raw Medium VDSVPDVSPAPSPAGIPHGSQTIGNHFQR Unambiguous 3 1 F8WCU9 CID 1.0000 0.0000 1 1 421 2.65 0.00 0 7 50 4 742.62335 2967.47158 0.23 38.78 3035 3035 MS2 26/168 Linfeng_20130204_CTCF_2.raw P39880-5 Isoform 6 of Homeobox protein cut-like 1 OS=Homo sapiens GN=CUX1 - [CUX1_HUMAN] 3.52 6 4 4 4 0.00 11.63 3.52 4 4 1449 157.8 5.80 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High SQLQGPSSSEYWK Unambiguous 6 1 P39880-5 CID 1.0000 0.0000 1 1 313 3.94 0.00 0 15 50 2 748.85480 1496.70232 0.45 36.30 2785 2785 MS2 19/24 Linfeng_20130204_CTCF_2.raw High ELDATATVLANR Unambiguous 6 1 P39880-5 CID 1.0000 0.0000 1 1 561 2.92 0.00 0 35 50 2 637.34052 1273.67375 -0.76 37.34 2889 2889 MS2 14/22 Linfeng_20130204_CTCF_2.raw Medium RPGSLPAPPPSQLPR Unambiguous 4 1 P39880-5 CID 1.0000 0.0000 1 1 314 2.41 0.00 1 25 50 3 523.96606 1569.88364 -1.55 33.15 2476 2476 MS2 20/56 Linfeng_20130204_CTCF_2.raw High EIAQLVEDVQR Unambiguous 6 1 P39880-5 CID 1.0000 0.0000 1 1 449 2.36 0.00 0 29 50 2 650.34863 1299.68999 -0.29 44.31 3608 3608 MS2 14/20 Linfeng_20130204_CTCF_2.raw Q8NDV7-2 Isoform 2 of Trinucleotide repeat-containing gene 6A protein OS=Homo sapiens GN=TNRC6A - [TNR6A_HUMAN] 3.39 4 3 3 3 8.74 3.39 3 3 1709 181.9 6.58 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High VSGGSTHGTWGSLQETcESEVSGTQK Unambiguous 4 1 Q8NDV7-2 C17(Carbamidomethyl) CID 1.0000 0.0000 1 1 169 4.29 0.00 0 6 50 3 903.73761 2709.19828 -2.77 36.06 2762 2762 MS2 29/100 Linfeng_20130204_CTCF_2.raw Medium SDQQAQVHQLLTPASAISNK Unambiguous 4 1 Q8NDV7-2 CID 1.0000 0.0000 1 1 519 2.44 0.00 0 8 50 3 712.70667 2136.10544 0.46 39.96 3159 3159 MS2 23/76 Linfeng_20130204_CTCF_2.raw High NLTPQIDGSTLR Unambiguous 4 1 Q8NDV7-2 CID 1.0000 0.0000 1 1 527 2.01 0.00 0 39 50 2 657.85333 1314.69939 -1.42 37.87 2942 2942 MS2 10/22 Linfeng_20130204_CTCF_2.raw Q9Y5B9 FACT complex subunit SPT16 OS=Homo sapiens GN=SUPT16H PE=1 SV=1 - [SP16H_HUMAN] 3.25 1 3 3 6 15.17 3.25 3 6 1047 119.8 5.66 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High YTEGVQSLNWTK Unambiguous 1 1 Q9Y5B9 CID 1.0000 0.0000 1 1 443 3.03 0.00 0 8 50 2 713.35498 1425.70268 1.24 41.54 3024 3024 MS2 18/22 Linfeng_20130204_CTCF_3.raw High QDSLVINLNR Unambiguous 1 1 Q9Y5B9 CID 1.0000 0.0000 1 1 529 2.59 0.00 0 35 50 2 586.31982 1171.63237 -9.08 41.99 3367 3367 MS2 14/18 Linfeng_20130204_CTCF_2.raw High YTEGVQSLNWTK Unambiguous 1 1 Q9Y5B9 CID 1.0000 0.0000 1 1 457 2.42 0.00 0 19 50 2 713.35431 1425.70134 0.30 41.39 3305 3305 MS2 18/22 Linfeng_20130204_CTCF_2.raw High QDSLVINLNR Unambiguous 1 1 Q9Y5B9 CID 1.0000 0.0000 1 1 542 2.40 0.00 0 15 50 2 586.32202 1171.63677 -5.33 42.12 3084 3084 MS2 14/18 Linfeng_20130204_CTCF_3.raw High YTEGVQSLNWTK Unambiguous 1 1 Q9Y5B9 CID 1.0000 0.0000 1 1 460 2.37 0.00 0 0 50 2 713.35443 1425.70159 0.47 41.87 3058 3058 MS2 13/22 Linfeng_20130204_CTCF_3.raw High INFYcPGSALGR Unambiguous 1 1 Q9Y5B9 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 345 2.36 0.00 0 23 50 2 677.83215 1354.65703 -0.19 45.93 3474 3474 MS2 15/22 Linfeng_20130204_CTCF_3.raw Q92922 SWI/SNF complex subunit SMARCC1 OS=Homo sapiens GN=SMARCC1 PE=1 SV=3 - [SMRC1_HUMAN] 3.17 1 1 3 3 7.37 3.17 3 3 1105 122.8 5.76 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High SKTPEIYLAYR Unambiguous 5 2 Q92922;Q8TAQ2-2 CID 1.0000 0.0000 1 1 422 2.64 0.00 1 17 50 3 447.57791 1340.71918 -1.29 38.84 3041 3041 MS2 18/40 Linfeng_20130204_CTCF_2.raw High NLTGDVcAVMR Unambiguous 1 1 Q92922 C7(Carbamidomethyl) CID 1.0000 0.0000 1 1 383 2.47 0.00 0 47 50 2 618.29846 1235.58965 2.00 43.42 3513 3513 MS2 13/20 Linfeng_20130204_CTCF_2.raw High LNPQEYLTSTAcR Unambiguous 5 2 Q92922;Q8TAQ2-2 C12(Carbamidomethyl) CID 1.0000 0.0000 1 1 414 2.27 0.00 0 19 50 2 776.87341 1552.73955 -1.88 41.97 3365 3365 MS2 14/24 Linfeng_20130204_CTCF_2.raw P49792 E3 SUMO-protein ligase RanBP2 OS=Homo sapiens GN=RANBP2 PE=1 SV=2 - [RBP2_HUMAN] 2.92 3 5 5 7 20.66 2.92 5 7 3224 358.0 6.20 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High IAVAVLEETTR Unambiguous 3 1 P49792 CID 1.0000 0.0000 1 1 404 3.51 0.00 0 19 50 2 601.34259 1201.67790 -0.70 42.17 3433 3433 MS2 18/20 Linfeng_20130204_CTCF_1.raw High LLVQHEINTLR Unambiguous 3 1 P49792 CID 1.0000 0.0000 1 1 196 3.41 0.00 0 39 50 2 668.39063 1335.77397 -0.29 37.20 2875 2875 MS2 16/20 Linfeng_20130204_CTCF_2.raw High LLVQHEINTLR Unambiguous 3 1 P49792 CID 1.0000 0.0000 1 1 219 3.38 0.00 0 48 50 2 668.39026 1335.77324 -0.84 36.83 2885 2885 MS2 18/20 Linfeng_20130204_CTCF_1.raw High IAVAVLEETTR Unambiguous 3 1 P49792 CID 1.0000 0.0000 1 1 521 3.28 0.00 0 26 50 2 601.34265 1201.67803 -0.60 42.53 3422 3422 MS2 18/20 Linfeng_20130204_CTCF_2.raw High SGFEGMFTK Unambiguous 1 1 P49792 CID 1.0000 0.0000 1 1 152 2.52 0.00 0 14 50 2 502.23059 1003.45391 -1.49 44.12 3633 3633 MS2 13/16 Linfeng_20130204_CTCF_1.raw High EGQWDcSVcLVR Unambiguous 1 1 P49792 C6(Carbamidomethyl); C9(Carbamidomethyl) CID 1.0000 0.0000 1 1 139 2.32 0.00 0 38 50 2 754.83569 1508.66411 1.31 43.56 3575 3575 MS2 14/22 Linfeng_20130204_CTCF_1.raw High FDAEVSQWK Unambiguous 3 1 P49792 CID 1.0000 0.0000 1 1 357 2.24 0.00 0 29 50 2 555.26685 1109.52641 0.15 37.71 2973 2973 MS2 13/16 Linfeng_20130204_CTCF_1.raw Q9H583 HEAT repeat-containing protein 1 OS=Homo sapiens GN=HEATR1 PE=1 SV=3 - [HEAT1_HUMAN] 2.61 2 4 4 4 13.55 2.61 4 4 2144 242.2 6.54 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High SQDLESVQEVGGSYWQR Unambiguous 2 1 Q9H583 CID 1.0000 0.0000 1 1 279 4.20 0.00 0 0 50 2 984.45966 1967.91203 1.32 45.09 3690 3690 MS2 20/32 Linfeng_20130204_CTCF_2.raw High LDDTYSFQVINK Unambiguous 2 1 Q9H583 CID 1.0000 0.0000 1 1 429 3.57 0.00 0 5 50 2 721.86163 1442.71599 -0.17 44.10 3586 3586 MS2 19/22 Linfeng_20130204_CTCF_2.raw High YNEFSVSLLNEDPK Unambiguous 1 1 Q9H583 CID 1.0000 0.0000 1 1 409 3.21 0.00 0 7 50 2 827.90283 1654.79839 1.47 50.63 4305 4305 MS2 17/26 Linfeng_20130204_CTCF_2.raw High VFAEYPGSSAQLR Unambiguous 2 1 Q9H583 CID 1.0000 0.0000 1 1 397 2.58 0.00 0 11 50 2 712.86194 1424.71660 -0.22 37.91 2946 2946 MS2 16/24 Linfeng_20130204_CTCF_2.raw O75643 U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2 - [U520_HUMAN] 2.57 1 4 4 6 15.91 2.57 4 6 2136 244.4 6.06 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High EEISATQIIVcTPEK Unambiguous 1 1 O75643 C11(Carbamidomethyl) CID 1.0000 0.0000 1 1 500 3.44 0.00 0 0 50 2 859.44037 1717.87346 3.32 43.19 3536 3536 MS2 18/28 Linfeng_20130204_CTCF_1.raw High VVLLTGETSTDLK Unambiguous 1 1 O75643 CID 1.0000 0.0000 1 1 410 2.85 0.00 0 35 50 2 688.38708 1375.76689 -0.77 41.64 3331 3331 MS2 16/24 Linfeng_20130204_CTCF_2.raw High TGNFQVTELGR Unambiguous 1 1 O75643 CID 1.0000 0.0000 1 1 491 2.77 0.00 0 31 50 2 611.31567 1221.62407 1.47 37.76 2930 2930 MS2 15/20 Linfeng_20130204_CTCF_2.raw High VVLLTGETSTDLK Unambiguous 1 1 O75643 CID 1.0000 0.0000 1 1 383 2.38 0.00 0 18 50 2 688.38800 1375.76872 0.56 41.36 3349 3349 MS2 19/24 Linfeng_20130204_CTCF_1.raw Medium MTQNPNYYNLQGISHR Unambiguous 1 1 O75643 CID 1.0000 0.0000 1 1 379 2.31 0.00 0 14 50 3 645.97540 1935.91166 -0.72 36.49 2850 2850 MS2 17/60 Linfeng_20130204_CTCF_1.raw High TGNFQVTELGR Unambiguous 1 1 O75643 CID 1.0000 0.0000 1 1 491 2.16 0.00 0 46 50 2 611.31842 1221.62956 5.96 37.51 2952 2952 MS2 13/20 Linfeng_20130204_CTCF_1.raw O95613-2 Isoform 2 of Pericentrin OS=Homo sapiens GN=PCNT - [PCNT_HUMAN] 2.55 2 5 5 6 17.23 2.55 5 6 3139 355.7 5.47 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High ALQSQLEEEQLR Unambiguous 2 1 O95613-2 CID 1.0000 0.0000 1 1 522 3.86 0.00 0 3 50 2 722.37512 1443.74297 -0.62 34.95 2695 2695 MS2 18/22 Linfeng_20130204_CTCF_1.raw High LDMQNSQTAVSLR Unambiguous 2 1 O95613-2 CID 1.0000 0.0000 1 1 486 3.11 0.00 0 12 50 2 731.86981 1462.73235 0.29 35.08 2709 2709 MS2 17/24 Linfeng_20130204_CTCF_1.raw High LSPGSGGPEAQTAGPVTPASISGR Unambiguous 2 1 O95613-2 CID 1.0000 0.0000 1 1 540 2.95 0.00 0 12 50 3 732.04102 2194.10849 -0.67 36.48 2849 2849 MS2 26/92 Linfeng_20130204_CTCF_1.raw High NLEIDALNQR Unambiguous 2 1 O95613-2 CID 1.0000 0.0000 1 1 418 2.72 0.00 0 22 50 2 593.31567 1185.62407 1.51 39.53 3160 3160 MS2 14/18 Linfeng_20130204_CTCF_1.raw Medium LQQLEQDLTSDDALHcSQcGR Unambiguous 2 1 O95613-2 C16(Carbamidomethyl); C19(Carbamidomethyl) CID 1.0000 0.0000 1 1 169 2.31 0.00 0 24 50 3 825.37299 2474.10440 0.34 39.88 3196 3196 MS2 23/80 Linfeng_20130204_CTCF_1.raw High ALQSQLEEEQLR Unambiguous 2 1 O95613-2 CID 1.0000 0.0000 1 1 535 2.28 0.00 0 19 50 2 722.37531 1443.74333 -0.37 35.54 2416 2416 MS2 12/22 Linfeng_20130204_CTCF_3.raw E7EUY0 DNA-dependent protein kinase catalytic subunit OS=Homo sapiens GN=PRKDC PE=4 SV=1 - [E7EUY0_HUMAN] 2.54 3 8 8 8 0.00 24.31 2.54 8 8 4096 465.1 7.17 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High LNESTFDTQITK Unambiguous 3 1 E7EUY0 CID 1.0000 0.0000 1 1 494 3.66 0.00 0 19 50 2 698.85107 1396.69487 -0.45 35.84 2785 2785 MS2 18/22 Linfeng_20130204_CTCF_1.raw High VVQmLGSLGGQINK Unambiguous 3 1 E7EUY0 M4(Oxidation) CID 1.0000 0.0000 1 1 486 3.54 0.00 0 24 50 2 730.40009 1459.79289 -0.62 36.28 2829 2829 MS2 19/26 Linfeng_20130204_CTCF_1.raw High INQVFHGScITEGNELTK Unambiguous 3 1 E7EUY0 C9(Carbamidomethyl) CID 1.0000 0.0000 1 1 491 3.47 0.00 0 12 50 3 683.00189 2046.99112 -0.13 36.89 2891 2891 MS2 21/68 Linfeng_20130204_CTCF_1.raw High HGDLPDIQIK Unambiguous 3 1 E7EUY0 CID 1.0000 0.0000 1 1 616 3.08 0.00 0 28 50 2 568.30896 1135.61064 -0.01 36.86 2888 2888 MS2 15/18 Linfeng_20130204_CTCF_1.raw High DQNILLGTTYR Unambiguous 3 1 E7EUY0 CID 1.0000 0.0000 1 1 492 2.91 0.00 0 43 50 2 647.34583 1293.68437 3.55 42.97 3514 3514 MS2 16/20 Linfeng_20130204_CTCF_1.raw High SLGTIQQccDAIDHLcR Unambiguous 3 1 E7EUY0 C8(Carbamidomethyl); C9(Carbamidomethyl); C16(Carbamidomethyl) CID 1.0000 0.0000 1 1 177 2.91 0.00 0 12 50 3 682.97589 2046.91312 -1.15 41.61 3376 3376 MS2 17/64 Linfeng_20130204_CTCF_1.raw High SQGcSEQVLTVLK Unambiguous 3 1 E7EUY0 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 527 2.69 0.00 0 23 50 2 724.87518 1448.74309 1.16 41.82 3398 3398 MS2 17/24 Linfeng_20130204_CTCF_1.raw High LPVLAGcLK Unambiguous 3 1 E7EUY0 C7(Carbamidomethyl) CID 1.0000 0.0000 1 1 366 2.06 0.00 0 17 50 2 485.79068 970.57408 -1.41 42.65 3481 3481 MS2 12/16 Linfeng_20130204_CTCF_1.raw P02751-12 Isoform 12 of Fibronectin OS=Homo sapiens GN=FN1 - [FINC_HUMAN] 2.14 15 3 3 3 8.95 2.14 3 3 2008 221.2 6.18 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High SYTITGLQPGTDYK Unambiguous 15 1 P02751-12 CID 1.0000 0.0000 1 1 361 3.40 0.00 0 5 50 2 772.38654 1543.76579 1.23 40.51 3261 3261 MS2 19/26 Linfeng_20130204_CTCF_1.raw High VPGTSTSATLTGLTR Unambiguous 15 1 P02751-12 CID 1.0000 0.0000 1 1 480 3.17 0.00 0 40 50 2 731.39606 1461.78484 -4.09 37.55 2957 2957 MS2 15/28 Linfeng_20130204_CTCF_1.raw Medium YSFcTDHTVLVQTR Unambiguous 15 1 P02751-12 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 441 2.38 0.00 0 23 50 3 576.27930 1726.82334 0.90 38.36 3038 3038 MS2 14/52 Linfeng_20130204_CTCF_1.raw Q8TEM1 Nuclear pore membrane glycoprotein 210 OS=Homo sapiens GN=NUP210 PE=1 SV=3 - [PO210_HUMAN] 2.12 1 3 3 3 0.00 11.05 2.12 3 3 1887 205.0 6.81 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High GVAIGQTSLTASVTNK Unambiguous 1 1 Q8TEM1 CID 1.0000 0.0000 1 1 349 4.09 0.00 0 12 50 2 773.92517 1546.84307 -0.33 38.41 2997 2997 MS2 22/30 Linfeng_20130204_CTCF_2.raw High AVDPTSGQLYGLAR Unambiguous 1 1 Q8TEM1 CID 1.0000 0.0000 1 1 611 3.75 0.00 0 12 50 2 724.38074 1447.75420 0.12 41.35 3301 3301 MS2 21/26 Linfeng_20130204_CTCF_2.raw High VGQALELPLR Unambiguous 1 1 Q8TEM1 CID 1.0000 0.0000 1 1 190 3.20 0.00 0 30 50 2 548.32996 1095.65264 0.46 46.09 3797 3797 MS2 17/18 Linfeng_20130204_CTCF_2.raw Q92621 Nuclear pore complex protein Nup205 OS=Homo sapiens GN=NUP205 PE=1 SV=3 - [NU205_HUMAN] 1.94 1 3 3 3 8.03 1.94 3 3 2012 227.8 6.19 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High KPVSTTNLQDPGVLGcPR Unambiguous 1 1 Q92621 C16(Carbamidomethyl) CID 1.0000 0.0000 1 1 507 3.20 0.00 1 4 50 3 647.00641 1939.00467 -1.03 34.78 2636 2636 MS2 22/68 Linfeng_20130204_CTCF_2.raw High IQQGALELLR Unambiguous 1 1 Q92621 CID 1.0000 0.0000 1 1 212 2.50 0.00 0 20 50 2 570.84082 1140.67436 0.68 46.52 3842 3842 MS2 16/18 Linfeng_20130204_CTCF_2.raw High VLVDSLVEDDR Unambiguous 1 1 Q92621 CID 1.0000 0.0000 1 1 468 2.33 0.00 0 36 50 2 630.32660 1259.64592 -1.52 42.21 3390 3390 MS2 15/20 Linfeng_20130204_CTCF_2.raw A6H8M8 C4A protein OS=Homo sapiens GN=C4A PE=2 SV=1 - [A6H8M8_HUMAN] 1.83 14 3 3 13 39.21 1.83 3 13 1698 187.6 7.12 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High YLDKTEQWSTLPPETK Unambiguous 14 1 A6H8M8 CID 1.0000 0.0000 1 1 371 3.85 0.00 1 19 50 2 968.48956 1935.97185 1.01 38.40 2702 2702 MS2 17/30 Linfeng_20130204_CTCF_3.raw High VLSLAQEQVGGSPEK Unambiguous 14 1 A6H8M8 CID 1.0000 0.0000 1 1 455 3.81 0.00 0 12 40 2 771.41248 1541.81767 0.41 34.81 2345 2345 MS2 22/28 Linfeng_20130204_CTCF_3.raw High VLSLAQEQVGGSPEK Unambiguous 14 1 A6H8M8 CID 1.0000 0.0000 1 1 417 3.37 0.00 0 14 50 2 771.41510 1541.82292 3.82 34.88 2347 2347 MS2 22/28 Linfeng_20130204_CTCF_4.raw High VLSLAQEQVGGSPEK Unambiguous 14 1 A6H8M8 CID 1.0000 0.0000 1 1 435 3.26 0.00 0 1 50 2 771.41296 1541.81865 1.04 35.83 2445 2445 MS2 22/28 Linfeng_20130204_CTCF_3.raw High TEQWSTLPPETK Unambiguous 14 1 A6H8M8 CID 1.0000 0.0000 1 1 393 2.95 0.00 0 5 50 2 708.85376 1416.70024 -0.25 35.73 2431 2431 MS2 16/22 Linfeng_20130204_CTCF_4.raw High YLDKTEQWSTLPPETK Unambiguous 14 1 A6H8M8 CID 1.0000 0.0000 1 1 489 2.90 0.00 1 16 50 3 645.99500 1935.97043 0.27 38.15 2677 2677 MS2 18/60 Linfeng_20130204_CTCF_3.raw High TEQWSTLPPETK Unambiguous 14 1 A6H8M8 CID 1.0000 0.0000 1 1 425 2.88 0.00 0 0 50 2 708.85480 1416.70232 1.22 36.60 2521 2521 MS2 18/22 Linfeng_20130204_CTCF_3.raw High VLSLAQEQVGGSPEK Unambiguous 14 1 A6H8M8 CID 1.0000 0.0000 1 1 458 2.87 0.00 0 0 50 2 771.41229 1541.81731 0.17 36.58 2519 2519 MS2 17/28 Linfeng_20130204_CTCF_3.raw High YLDKTEQWSTLPPETK Unambiguous 14 1 A6H8M8 CID 1.0000 0.0000 1 1 486 2.87 0.00 1 5 50 3 645.99500 1935.97043 0.27 39.34 2795 2795 MS2 19/60 Linfeng_20130204_CTCF_4.raw High TEQWSTLPPETK Unambiguous 14 1 A6H8M8 CID 1.0000 0.0000 1 1 410 2.82 0.00 0 5 50 2 708.85468 1416.70207 1.05 36.81 2538 2538 MS2 18/22 Linfeng_20130204_CTCF_4.raw High YLDKTEQWSTLPPETK Unambiguous 14 1 A6H8M8 CID 1.0000 0.0000 1 1 480 2.81 0.00 1 4 50 3 645.99500 1935.97043 0.27 39.22 2787 2787 MS2 19/60 Linfeng_20130204_CTCF_3.raw Medium YLDKTEQWSTLPPETK Unambiguous 14 1 A6H8M8 CID 1.0000 0.0000 1 1 484 2.45 0.00 1 48 50 3 645.99500 1935.97043 0.27 38.25 2683 2683 MS2 17/60 Linfeng_20130204_CTCF_4.raw High TEQWSTLPPETK Unambiguous 14 1 A6H8M8 CID 1.0000 0.0000 1 1 401 2.37 0.00 0 20 50 2 708.85431 1416.70134 0.53 37.72 2634 2634 MS2 13/22 Linfeng_20130204_CTCF_3.raw