Accession Description ?Coverage ?# Proteins ?# Unique Peptides ?# Peptides ?# PSMs Score A2 Coverage A2 # Peptides A2 # PSM A2 Score B2 Coverage B2 # Peptides B2 # PSM B2 # AAs MW [kDa] calc. pI IPI00946009.1 174 kDa protein 3.32 1 0 4 7 19.34 3.32 4 7 1567 174.3 5.31 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High IPPLFPIK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 113 2.03 0.00 0 0 27 2 462.79968 924.59209 0.36 48.97 4299 4299 MS2 12/14 Linfeng_20120515_BRCA1_3.raw High LGVLQPEVYK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 508 2.36 0.00 0 44 100 2 573.33374 1145.66020 3.21 35.79 2393 2393 MS2 11/18 Linfeng_20120515_BRCA1_4.raw High LGVLQPEVYK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 437 2.42 0.00 0 9 100 2 573.33313 1145.65898 2.14 36.18 2264 2264 MS2 11/18 Linfeng_20120515_BRCA1_2.raw Medium HIHALELVVSR Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 336 2.44 0.00 0 30 100 3 425.25137 1273.73957 1.56 47.75 3993 3993 MS2 23/40 Linfeng_20120515_BRCA1_3.raw High NESNIKPVQTVNITAGFPVVGQK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 301 3.01 0.00 1 18 100 3 814.11078 2440.31778 -0.73 44.51 3226 3226 MS2 25/88 Linfeng_20120515_BRCA1_3.raw High NESNIKPVQTVNITAGFPVVGQK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 308 3.52 0.00 1 8 100 3 814.11060 2440.31723 -0.95 44.79 3294 3294 MS2 24/88 Linfeng_20120515_BRCA1_3.raw High NESNIKPVQTVNITAGFPVVGQK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 256 3.56 0.00 1 28 100 3 814.11230 2440.32236 1.15 45.07 3360 3360 MS2 22/88 Linfeng_20120515_BRCA1_3.raw IPI00925674.1 176 kDa protein 3.60 1 0 3 6 0.00 17.71 3.60 3 6 1555 176.4 6.29 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High mLALALLDR Unambiguous 2 2 IPI00783781.2;IPI00925674.1 M1(Oxidation) CID 1.0000 0.0000 1 1 454 2.46 0.00 0 29 100 2 516.29987 1031.59245 0.59 48.32 4128 4128 MS2 14/16 Linfeng_20120515_BRCA1_3.raw High FTDELmEQGLTYK Unambiguous 2 2 IPI00783781.2;IPI00925674.1 M6(Oxidation) CID 1.0000 0.0000 1 1 344 2.51 0.00 0 8 100 2 795.87378 1590.74028 2.90 35.67 2210 2210 MS2 14/24 Linfeng_20120515_BRCA1_2.raw High mLALALLDR Unambiguous 2 2 IPI00783781.2;IPI00925674.1 M1(Oxidation) CID 1.0000 0.0000 1 1 474 2.68 0.00 0 37 100 2 516.29962 1031.59197 0.12 48.13 4084 4084 MS2 13/16 Linfeng_20120515_BRCA1_3.raw High FTDELmEQGLTYK Unambiguous 2 2 IPI00783781.2;IPI00925674.1 M6(Oxidation) CID 1.0000 0.0000 1 1 327 2.85 0.00 0 6 100 2 795.87384 1590.74040 2.98 35.52 2194 2194 MS2 17/24 Linfeng_20120515_BRCA1_2.raw High FTDELmEQGLTYK Unambiguous 2 2 IPI00783781.2;IPI00925674.1 M6(Oxidation) CID 1.0000 0.0000 1 1 347 2.99 0.00 0 3 100 2 795.87360 1590.73992 2.67 35.56 2198 2198 MS2 18/24 Linfeng_20120515_BRCA1_2.raw High ILDDEAAQELmPVVAGAVFTLTAHLSQAVLTEQK Unambiguous 2 2 IPI00783781.2;IPI00925674.1 M11(Oxidation) CID 1.0000 0.0000 1 1 292 4.22 0.00 0 25 92 4 906.97675 3624.88515 0.56 55.42 5117 5117 MS2 42/198 Linfeng_20120515_BRCA1_3.raw IPI00930496.1 181 kDa protein 3.82 1 0 5 8 22.66 3.82 5 8 1624 181.3 5.57 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High IPPLFPIK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 113 2.03 0.00 0 0 27 2 462.79968 924.59209 0.36 48.97 4299 4299 MS2 12/14 Linfeng_20120515_BRCA1_3.raw High LGVLQPEVYK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 508 2.36 0.00 0 44 100 2 573.33374 1145.66020 3.21 35.79 2393 2393 MS2 11/18 Linfeng_20120515_BRCA1_4.raw High LGVLQPEVYK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 437 2.42 0.00 0 9 100 2 573.33313 1145.65898 2.14 36.18 2264 2264 MS2 11/18 Linfeng_20120515_BRCA1_2.raw Medium HIHALELVVSR Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 336 2.44 0.00 0 30 100 3 425.25137 1273.73957 1.56 47.75 3993 3993 MS2 23/40 Linfeng_20120515_BRCA1_3.raw High NESNIKPVQTVNITAGFPVVGQK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 301 3.01 0.00 1 18 100 3 814.11078 2440.31778 -0.73 44.51 3226 3226 MS2 25/88 Linfeng_20120515_BRCA1_3.raw High FSQLVEELLK Unambiguous 6 6 IPI00218982.1;IPI00909467.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1 CID 1.0000 0.0000 1 1 472 3.32 0.00 0 2 14 2 603.34302 1205.67876 0.90 48.99 4307 4307 MS2 16/18 Linfeng_20120515_BRCA1_3.raw High NESNIKPVQTVNITAGFPVVGQK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 308 3.52 0.00 1 8 100 3 814.11060 2440.31723 -0.95 44.79 3294 3294 MS2 24/88 Linfeng_20120515_BRCA1_3.raw High NESNIKPVQTVNITAGFPVVGQK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 256 3.56 0.00 1 28 100 3 814.11230 2440.32236 1.15 45.07 3360 3360 MS2 22/88 Linfeng_20120515_BRCA1_3.raw IPI00297234.1 203 kDa protein 3.40 1 0 5 8 22.66 3.40 5 8 1822 203.2 5.48 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High IPPLFPIK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 113 2.03 0.00 0 0 27 2 462.79968 924.59209 0.36 48.97 4299 4299 MS2 12/14 Linfeng_20120515_BRCA1_3.raw High LGVLQPEVYK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 508 2.36 0.00 0 44 100 2 573.33374 1145.66020 3.21 35.79 2393 2393 MS2 11/18 Linfeng_20120515_BRCA1_4.raw High LGVLQPEVYK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 437 2.42 0.00 0 9 100 2 573.33313 1145.65898 2.14 36.18 2264 2264 MS2 11/18 Linfeng_20120515_BRCA1_2.raw Medium HIHALELVVSR Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 336 2.44 0.00 0 30 100 3 425.25137 1273.73957 1.56 47.75 3993 3993 MS2 23/40 Linfeng_20120515_BRCA1_3.raw High NESNIKPVQTVNITAGFPVVGQK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 301 3.01 0.00 1 18 100 3 814.11078 2440.31778 -0.73 44.51 3226 3226 MS2 25/88 Linfeng_20120515_BRCA1_3.raw High FSQLVEELLK Unambiguous 6 6 IPI00218982.1;IPI00909467.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1 CID 1.0000 0.0000 1 1 472 3.32 0.00 0 2 14 2 603.34302 1205.67876 0.90 48.99 4307 4307 MS2 16/18 Linfeng_20120515_BRCA1_3.raw High NESNIKPVQTVNITAGFPVVGQK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 308 3.52 0.00 1 8 100 3 814.11060 2440.31723 -0.95 44.79 3294 3294 MS2 24/88 Linfeng_20120515_BRCA1_3.raw High NESNIKPVQTVNITAGFPVVGQK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 256 3.56 0.00 1 28 100 3 814.11230 2440.32236 1.15 45.07 3360 3360 MS2 22/88 Linfeng_20120515_BRCA1_3.raw IPI00549805.3 23 kDa protein 17.05 1 0 3 10 28.00 17.05 3 10 217 22.9 9.69 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High AVDSLVPIGR Unambiguous 4 4 IPI00440493.2;IPI00471928.5;IPI00549805.3;IPI00908963.1 CID 1.0000 0.0000 1 1 320 2.21 0.00 0 33 100 2 513.80127 1026.59526 0.96 35.79 2979 2979 MS2 13/18 Linfeng_20120515_BRCA1_5.raw High AVDSLVPIGR Unambiguous 4 4 IPI00440493.2;IPI00471928.5;IPI00549805.3;IPI00908963.1 CID 1.0000 0.0000 1 1 336 2.30 0.00 0 24 100 2 513.80139 1026.59551 1.19 34.78 2760 2760 MS2 13/18 Linfeng_20120515_BRCA1_5.raw High VVDALGNAIDGK Unambiguous 3 3 IPI00440493.2;IPI00471928.5;IPI00549805.3 CID 1.0000 0.0000 1 1 489 2.56 0.00 0 10 100 2 586.32074 1171.63420 2.05 29.94 1861 1861 MS2 13/22 Linfeng_20120515_BRCA1_5.raw High VVDALGNAIDGK Unambiguous 3 3 IPI00440493.2;IPI00471928.5;IPI00549805.3 CID 1.0000 0.0000 1 1 500 2.58 0.00 0 5 100 2 586.32050 1171.63371 1.63 30.22 1890 1890 MS2 15/22 Linfeng_20120515_BRCA1_5.raw High VVDALGNAIDGK Unambiguous 3 3 IPI00440493.2;IPI00471928.5;IPI00549805.3 CID 1.0000 0.0000 1 1 528 2.82 0.00 0 33 100 2 586.32111 1171.63494 2.67 31.17 2017 2017 MS2 16/22 Linfeng_20120515_BRCA1_5.raw High VVDALGNAIDGK Unambiguous 3 3 IPI00440493.2;IPI00471928.5;IPI00549805.3 CID 1.0000 0.0000 1 1 510 2.83 0.00 0 21 100 2 586.32074 1171.63420 2.05 30.34 1905 1905 MS2 18/22 Linfeng_20120515_BRCA1_5.raw High VVDALGNAIDGK Unambiguous 3 3 IPI00440493.2;IPI00471928.5;IPI00549805.3 CID 1.0000 0.0000 1 1 512 2.86 0.00 0 14 100 2 586.32080 1171.63432 2.15 30.30 1900 1900 MS2 17/22 Linfeng_20120515_BRCA1_5.raw High VVDALGNAIDGK Unambiguous 3 3 IPI00440493.2;IPI00471928.5;IPI00549805.3 CID 1.0000 0.0000 1 1 525 3.06 0.00 0 12 100 2 586.32074 1171.63420 2.05 30.26 1894 1894 MS2 18/22 Linfeng_20120515_BRCA1_5.raw High ILGADTSVDLEETGR Unambiguous 4 4 IPI00440493.2;IPI00471928.5;IPI00549805.3;IPI00908963.1 CID 1.0000 0.0000 1 1 545 3.25 0.00 0 5 100 2 788.39850 1575.78972 2.27 35.16 2842 2842 MS2 18/28 Linfeng_20120515_BRCA1_5.raw High VVDALGNAIDGK Unambiguous 3 3 IPI00440493.2;IPI00471928.5;IPI00549805.3 CID 1.0000 0.0000 1 1 492 3.53 0.00 0 42 100 2 586.32092 1171.63457 2.36 30.90 1976 1976 MS2 16/22 Linfeng_20120515_BRCA1_5.raw IPI00789750.1 27 kDa protein 19.53 1 0 4 25 63.60 19.53 4 25 256 26.5 5.14 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 578 2.02 0.00 0 40 100 2 515.30121 1029.59514 1.16 37.05 2747 2747 MS2 11/16 Linfeng_20120514_rIgG_10.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 597 2.03 0.00 0 28 100 2 515.30145 1029.59563 1.64 36.93 2876 2876 MS2 12/16 Linfeng_20120514_rIgG_8.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 560 2.06 0.00 0 29 100 2 515.30127 1029.59526 1.28 37.49 2897 2897 MS2 10/16 Linfeng_20120514_rIgG_9.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 591 2.07 0.00 0 35 100 2 515.30133 1029.59538 1.40 37.57 2908 2908 MS2 12/16 Linfeng_20120514_rIgG_9.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 599 2.14 0.00 0 9 100 2 515.30164 1029.59599 1.99 37.07 2514 2514 MS2 10/16 Linfeng_20120514_rIgG_4.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 627 2.15 0.00 0 33 100 2 515.30115 1029.59502 1.05 38.36 3160 3160 MS2 15/16 Linfeng_20120514_rIgG_2.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 618 2.21 0.00 0 10 100 2 515.30182 1029.59636 2.35 36.82 2803 2803 MS2 14/16 Linfeng_20120514_rIgG_6.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 597 2.22 0.00 0 17 100 2 515.30212 1029.59697 2.94 37.13 2753 2753 MS2 13/16 Linfeng_20120514_rIgG_5.raw High mSVEADINGLR Unambiguous 3 3 IPI00384444.6;IPI00789750.1;IPI00792454.1 M1(Oxidation) CID 1.0000 0.0000 1 1 467 2.23 0.00 0 48 100 2 610.80164 1220.59599 1.60 32.51 2159 2159 MS2 12/20 Linfeng_20120514_rIgG_1.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 614 2.23 0.00 0 7 100 2 515.30170 1029.59612 2.11 37.88 2951 2951 MS2 13/16 Linfeng_20120514_rIgG_6.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 588 2.25 0.00 0 36 100 2 515.30121 1029.59514 1.16 37.01 2742 2742 MS2 12/16 Linfeng_20120514_rIgG_10.raw High DAEEWFFTK Unambiguous 4 4 IPI00384444.6;IPI00789750.1;IPI00791156.1;IPI00792454.1 CID 1.0000 0.0000 1 1 187 2.31 0.00 0 25 100 2 586.76672 1172.52617 0.21 48.50 4852 4852 MS2 13/16 Linfeng_20120514_rIgG_2.raw High DAEEWFFTK Unambiguous 4 4 IPI00384444.6;IPI00789750.1;IPI00791156.1;IPI00792454.1 CID 1.0000 0.0000 1 1 190 2.39 0.00 0 18 100 2 586.76642 1172.52556 -0.31 48.59 4478 4478 MS2 13/16 Linfeng_20120514_rIgG_3.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 585 2.43 0.00 0 9 100 2 515.30194 1029.59661 2.59 36.87 2811 2811 MS2 15/16 Linfeng_20120514_rIgG_6.raw High mSVEADINGLR Unambiguous 3 3 IPI00384444.6;IPI00789750.1;IPI00792454.1 M1(Oxidation) CID 1.0000 0.0000 1 1 516 2.52 0.00 0 45 100 2 610.80267 1220.59807 3.30 32.63 2178 2178 MS2 15/20 Linfeng_20120514_rIgG_1.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 610 2.64 0.00 0 14 100 2 515.30127 1029.59526 1.28 37.53 3036 3036 MS2 15/16 Linfeng_20120514_rIgG_2.raw High DAEEWFFTK Unambiguous 4 4 IPI00384444.6;IPI00789750.1;IPI00791156.1;IPI00792454.1 CID 1.0000 0.0000 1 1 190 2.68 0.00 0 19 100 2 586.76666 1172.52605 0.11 48.48 4455 4455 MS2 13/16 Linfeng_20120514_rIgG_3.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 563 2.71 0.00 0 37 100 2 515.30139 1029.59551 1.52 37.08 2751 2751 MS2 12/16 Linfeng_20120514_rIgG_10.raw High DAEEWFFTK Unambiguous 4 4 IPI00384444.6;IPI00789750.1;IPI00791156.1;IPI00792454.1 CID 1.0000 0.0000 1 1 193 2.76 0.00 0 15 100 2 586.76733 1172.52739 1.25 48.60 4878 4878 MS2 13/16 Linfeng_20120514_rIgG_2.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 615 2.80 0.00 0 2 100 2 515.30182 1029.59636 2.35 36.94 2812 2812 MS2 15/16 Linfeng_20120514_rIgG_3.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 591 2.85 0.00 0 7 100 2 515.30109 1029.59490 0.93 38.00 2937 2937 MS2 14/16 Linfeng_20120514_rIgG_3.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 613 3.16 0.00 0 4 100 2 515.30206 1029.59685 2.82 37.77 2873 2873 MS2 14/16 Linfeng_20120514_rIgG_1.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 555 3.17 0.00 0 10 100 2 515.30255 1029.59783 3.77 36.74 2743 2743 MS2 15/16 Linfeng_20120514_rIgG_1.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 603 3.44 0.00 0 5 100 2 515.30164 1029.59599 1.99 36.97 2816 2816 MS2 14/16 Linfeng_20120514_rIgG_3.raw High GQVGGDVNVEmDAAPGVDLSR Unambiguous 4 4 IPI00384444.6;IPI00789750.1;IPI00791156.1;IPI00792454.1 M11(Oxidation) CID 1.0000 0.0000 1 1 292 4.15 0.00 0 0 100 2 1051.49707 2101.98686 2.31 33.02 2265 2265 MS2 22/40 Linfeng_20120514_rIgG_3.raw IPI00792454.1 30 kDa protein 31.80 1 0 6 32 85.09 31.80 6 32 0.00 261 30.0 4.89 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 578 2.02 0.00 0 40 100 2 515.30121 1029.59514 1.16 37.05 2747 2747 MS2 11/16 Linfeng_20120514_rIgG_10.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 597 2.03 0.00 0 28 100 2 515.30145 1029.59563 1.64 36.93 2876 2876 MS2 12/16 Linfeng_20120514_rIgG_8.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 560 2.06 0.00 0 29 100 2 515.30127 1029.59526 1.28 37.49 2897 2897 MS2 10/16 Linfeng_20120514_rIgG_9.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 591 2.07 0.00 0 35 100 2 515.30133 1029.59538 1.40 37.57 2908 2908 MS2 12/16 Linfeng_20120514_rIgG_9.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 599 2.14 0.00 0 9 100 2 515.30164 1029.59599 1.99 37.07 2514 2514 MS2 10/16 Linfeng_20120514_rIgG_4.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 627 2.15 0.00 0 33 100 2 515.30115 1029.59502 1.05 38.36 3160 3160 MS2 15/16 Linfeng_20120514_rIgG_2.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 618 2.21 0.00 0 10 100 2 515.30182 1029.59636 2.35 36.82 2803 2803 MS2 14/16 Linfeng_20120514_rIgG_6.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 597 2.22 0.00 0 17 100 2 515.30212 1029.59697 2.94 37.13 2753 2753 MS2 13/16 Linfeng_20120514_rIgG_5.raw High mSVEADINGLR Unambiguous 3 3 IPI00384444.6;IPI00789750.1;IPI00792454.1 M1(Oxidation) CID 1.0000 0.0000 1 1 467 2.23 0.00 0 48 100 2 610.80164 1220.59599 1.60 32.51 2159 2159 MS2 12/20 Linfeng_20120514_rIgG_1.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 614 2.23 0.00 0 7 100 2 515.30170 1029.59612 2.11 37.88 2951 2951 MS2 13/16 Linfeng_20120514_rIgG_6.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 588 2.25 0.00 0 36 100 2 515.30121 1029.59514 1.16 37.01 2742 2742 MS2 12/16 Linfeng_20120514_rIgG_10.raw High DAEEWFFTK Unambiguous 4 4 IPI00384444.6;IPI00789750.1;IPI00791156.1;IPI00792454.1 CID 1.0000 0.0000 1 1 187 2.31 0.00 0 25 100 2 586.76672 1172.52617 0.21 48.50 4852 4852 MS2 13/16 Linfeng_20120514_rIgG_2.raw High DAEEWFFTK Unambiguous 4 4 IPI00384444.6;IPI00789750.1;IPI00791156.1;IPI00792454.1 CID 1.0000 0.0000 1 1 190 2.39 0.00 0 18 100 2 586.76642 1172.52556 -0.31 48.59 4478 4478 MS2 13/16 Linfeng_20120514_rIgG_3.raw High TRLEQEIATYR Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 589 2.42 0.00 1 8 100 2 690.36853 1379.72978 1.44 35.74 2658 2658 MS2 12/20 Linfeng_20120514_rIgG_3.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 585 2.43 0.00 0 9 100 2 515.30194 1029.59661 2.59 36.87 2811 2811 MS2 15/16 Linfeng_20120514_rIgG_6.raw High TRLEQEIATYR Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 500 2.43 0.00 1 0 100 2 690.36963 1379.73198 3.03 36.40 2702 2702 MS2 11/20 Linfeng_20120514_rIgG_1.raw High LLEGEDAHLSSSQFSSGSQSSR Unambiguous 2 2 IPI00384444.6;IPI00792454.1 CID 1.0000 0.0000 1 1 362 2.52 0.00 0 9 100 3 770.36005 2309.06559 0.64 29.33 1870 1870 MS2 24/84 Linfeng_20120514_rIgG_2.raw High mSVEADINGLR Unambiguous 3 3 IPI00384444.6;IPI00789750.1;IPI00792454.1 M1(Oxidation) CID 1.0000 0.0000 1 1 516 2.52 0.00 0 45 100 2 610.80267 1220.59807 3.30 32.63 2178 2178 MS2 15/20 Linfeng_20120514_rIgG_1.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 610 2.64 0.00 0 14 100 2 515.30127 1029.59526 1.28 37.53 3036 3036 MS2 15/16 Linfeng_20120514_rIgG_2.raw High DAEEWFFTK Unambiguous 4 4 IPI00384444.6;IPI00789750.1;IPI00791156.1;IPI00792454.1 CID 1.0000 0.0000 1 1 190 2.68 0.00 0 19 100 2 586.76666 1172.52605 0.11 48.48 4455 4455 MS2 13/16 Linfeng_20120514_rIgG_3.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 563 2.71 0.00 0 37 100 2 515.30139 1029.59551 1.52 37.08 2751 2751 MS2 12/16 Linfeng_20120514_rIgG_10.raw High DAEEWFFTK Unambiguous 4 4 IPI00384444.6;IPI00789750.1;IPI00791156.1;IPI00792454.1 CID 1.0000 0.0000 1 1 193 2.76 0.00 0 15 100 2 586.76733 1172.52739 1.25 48.60 4878 4878 MS2 13/16 Linfeng_20120514_rIgG_2.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 615 2.80 0.00 0 2 100 2 515.30182 1029.59636 2.35 36.94 2812 2812 MS2 15/16 Linfeng_20120514_rIgG_3.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 591 2.85 0.00 0 7 100 2 515.30109 1029.59490 0.93 38.00 2937 2937 MS2 14/16 Linfeng_20120514_rIgG_3.raw High TRLEQEIATYR Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 510 3.04 0.00 1 4 100 2 690.36951 1379.73174 2.85 36.20 2681 2681 MS2 15/20 Linfeng_20120514_rIgG_1.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 613 3.16 0.00 0 4 100 2 515.30206 1029.59685 2.82 37.77 2873 2873 MS2 14/16 Linfeng_20120514_rIgG_1.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 555 3.17 0.00 0 10 100 2 515.30255 1029.59783 3.77 36.74 2743 2743 MS2 15/16 Linfeng_20120514_rIgG_1.raw High LLEGEDAHLSSSQFSSGSQSSR Unambiguous 2 2 IPI00384444.6;IPI00792454.1 CID 1.0000 0.0000 1 1 366 3.30 0.00 0 6 100 3 770.35986 2309.06504 0.40 29.97 1942 1942 MS2 25/84 Linfeng_20120514_rIgG_2.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 603 3.44 0.00 0 5 100 2 515.30164 1029.59599 1.99 36.97 2816 2816 MS2 14/16 Linfeng_20120514_rIgG_3.raw High LLEGEDAHLSSSQFSSGSQSSR Unambiguous 2 2 IPI00384444.6;IPI00792454.1 CID 1.0000 0.0000 1 1 363 3.50 0.00 0 17 100 3 770.36060 2309.06723 1.35 29.46 1854 1854 MS2 27/84 Linfeng_20120514_rIgG_3.raw High GQVGGDVNVEmDAAPGVDLSR Unambiguous 4 4 IPI00384444.6;IPI00789750.1;IPI00791156.1;IPI00792454.1 M11(Oxidation) CID 1.0000 0.0000 1 1 292 4.15 0.00 0 0 100 2 1051.49707 2101.98686 2.31 33.02 2265 2265 MS2 22/40 Linfeng_20120514_rIgG_3.raw High LLEGEDAHLSSSQFSSGSQSSR Unambiguous 2 2 IPI00384444.6;IPI00792454.1 CID 1.0000 0.0000 1 1 375 4.27 0.00 0 18 100 3 770.36145 2309.06980 2.46 29.57 1867 1867 MS2 34/84 Linfeng_20120514_rIgG_3.raw IPI00791156.1 31 kDa protein 13.83 1 0 3 23 58.85 13.83 3 23 0.00 282 30.7 5.08 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 578 2.02 0.00 0 40 100 2 515.30121 1029.59514 1.16 37.05 2747 2747 MS2 11/16 Linfeng_20120514_rIgG_10.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 597 2.03 0.00 0 28 100 2 515.30145 1029.59563 1.64 36.93 2876 2876 MS2 12/16 Linfeng_20120514_rIgG_8.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 560 2.06 0.00 0 29 100 2 515.30127 1029.59526 1.28 37.49 2897 2897 MS2 10/16 Linfeng_20120514_rIgG_9.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 591 2.07 0.00 0 35 100 2 515.30133 1029.59538 1.40 37.57 2908 2908 MS2 12/16 Linfeng_20120514_rIgG_9.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 599 2.14 0.00 0 9 100 2 515.30164 1029.59599 1.99 37.07 2514 2514 MS2 10/16 Linfeng_20120514_rIgG_4.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 627 2.15 0.00 0 33 100 2 515.30115 1029.59502 1.05 38.36 3160 3160 MS2 15/16 Linfeng_20120514_rIgG_2.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 618 2.21 0.00 0 10 100 2 515.30182 1029.59636 2.35 36.82 2803 2803 MS2 14/16 Linfeng_20120514_rIgG_6.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 597 2.22 0.00 0 17 100 2 515.30212 1029.59697 2.94 37.13 2753 2753 MS2 13/16 Linfeng_20120514_rIgG_5.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 614 2.23 0.00 0 7 100 2 515.30170 1029.59612 2.11 37.88 2951 2951 MS2 13/16 Linfeng_20120514_rIgG_6.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 588 2.25 0.00 0 36 100 2 515.30121 1029.59514 1.16 37.01 2742 2742 MS2 12/16 Linfeng_20120514_rIgG_10.raw High DAEEWFFTK Unambiguous 4 4 IPI00384444.6;IPI00789750.1;IPI00791156.1;IPI00792454.1 CID 1.0000 0.0000 1 1 187 2.31 0.00 0 25 100 2 586.76672 1172.52617 0.21 48.50 4852 4852 MS2 13/16 Linfeng_20120514_rIgG_2.raw High DAEEWFFTK Unambiguous 4 4 IPI00384444.6;IPI00789750.1;IPI00791156.1;IPI00792454.1 CID 1.0000 0.0000 1 1 190 2.39 0.00 0 18 100 2 586.76642 1172.52556 -0.31 48.59 4478 4478 MS2 13/16 Linfeng_20120514_rIgG_3.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 585 2.43 0.00 0 9 100 2 515.30194 1029.59661 2.59 36.87 2811 2811 MS2 15/16 Linfeng_20120514_rIgG_6.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 610 2.64 0.00 0 14 100 2 515.30127 1029.59526 1.28 37.53 3036 3036 MS2 15/16 Linfeng_20120514_rIgG_2.raw High DAEEWFFTK Unambiguous 4 4 IPI00384444.6;IPI00789750.1;IPI00791156.1;IPI00792454.1 CID 1.0000 0.0000 1 1 190 2.68 0.00 0 19 100 2 586.76666 1172.52605 0.11 48.48 4455 4455 MS2 13/16 Linfeng_20120514_rIgG_3.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 563 2.71 0.00 0 37 100 2 515.30139 1029.59551 1.52 37.08 2751 2751 MS2 12/16 Linfeng_20120514_rIgG_10.raw High DAEEWFFTK Unambiguous 4 4 IPI00384444.6;IPI00789750.1;IPI00791156.1;IPI00792454.1 CID 1.0000 0.0000 1 1 193 2.76 0.00 0 15 100 2 586.76733 1172.52739 1.25 48.60 4878 4878 MS2 13/16 Linfeng_20120514_rIgG_2.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 615 2.80 0.00 0 2 100 2 515.30182 1029.59636 2.35 36.94 2812 2812 MS2 15/16 Linfeng_20120514_rIgG_3.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 591 2.85 0.00 0 7 100 2 515.30109 1029.59490 0.93 38.00 2937 2937 MS2 14/16 Linfeng_20120514_rIgG_3.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 613 3.16 0.00 0 4 100 2 515.30206 1029.59685 2.82 37.77 2873 2873 MS2 14/16 Linfeng_20120514_rIgG_1.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 555 3.17 0.00 0 10 100 2 515.30255 1029.59783 3.77 36.74 2743 2743 MS2 15/16 Linfeng_20120514_rIgG_1.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 603 3.44 0.00 0 5 100 2 515.30164 1029.59599 1.99 36.97 2816 2816 MS2 14/16 Linfeng_20120514_rIgG_3.raw High GQVGGDVNVEmDAAPGVDLSR Unambiguous 4 4 IPI00384444.6;IPI00789750.1;IPI00791156.1;IPI00792454.1 M11(Oxidation) CID 1.0000 0.0000 1 1 292 4.15 0.00 0 0 100 2 1051.49707 2101.98686 2.31 33.02 2265 2265 MS2 22/40 Linfeng_20120514_rIgG_3.raw IPI00873598.2 49 kDa protein 7.03 1 0 3 27 66.20 7.03 3 27 0.00 455 49.1 4.79 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 578 2.02 0.00 0 40 100 2 515.30121 1029.59514 1.16 37.05 2747 2747 MS2 11/16 Linfeng_20120514_rIgG_10.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 597 2.03 0.00 0 28 100 2 515.30145 1029.59563 1.64 36.93 2876 2876 MS2 12/16 Linfeng_20120514_rIgG_8.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 512 2.06 0.00 0 5 100 2 651.33282 1301.65837 -0.03 25.69 1470 1470 MS2 11/22 Linfeng_20120514_rIgG_3.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 560 2.06 0.00 0 29 100 2 515.30127 1029.59526 1.28 37.49 2897 2897 MS2 10/16 Linfeng_20120514_rIgG_9.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 591 2.07 0.00 0 35 100 2 515.30133 1029.59538 1.40 37.57 2908 2908 MS2 12/16 Linfeng_20120514_rIgG_9.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 599 2.14 0.00 0 9 100 2 515.30164 1029.59599 1.99 37.07 2514 2514 MS2 10/16 Linfeng_20120514_rIgG_4.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 627 2.15 0.00 0 33 100 2 515.30115 1029.59502 1.05 38.36 3160 3160 MS2 15/16 Linfeng_20120514_rIgG_2.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 512 2.17 0.00 0 4 100 2 651.33337 1301.65947 0.81 27.49 1653 1653 MS2 15/22 Linfeng_20120514_rIgG_2.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 618 2.21 0.00 0 10 100 2 515.30182 1029.59636 2.35 36.82 2803 2803 MS2 14/16 Linfeng_20120514_rIgG_6.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 597 2.22 0.00 0 17 100 2 515.30212 1029.59697 2.94 37.13 2753 2753 MS2 13/16 Linfeng_20120514_rIgG_5.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 614 2.23 0.00 0 7 100 2 515.30170 1029.59612 2.11 37.88 2951 2951 MS2 13/16 Linfeng_20120514_rIgG_6.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 588 2.25 0.00 0 36 100 2 515.30121 1029.59514 1.16 37.01 2742 2742 MS2 12/16 Linfeng_20120514_rIgG_10.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 512 2.26 0.00 0 6 100 2 651.33344 1301.65959 0.91 27.53 1657 1657 MS2 13/22 Linfeng_20120514_rIgG_2.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 538 2.27 0.00 0 4 100 2 651.33398 1301.66069 1.75 27.68 1655 1655 MS2 16/22 Linfeng_20120514_rIgG_3.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 546 2.42 0.00 0 7 100 2 651.33398 1301.66069 1.75 27.72 1661 1661 MS2 16/22 Linfeng_20120514_rIgG_3.raw High TRLEQEIATYR Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 589 2.42 0.00 1 8 100 2 690.36853 1379.72978 1.44 35.74 2658 2658 MS2 12/20 Linfeng_20120514_rIgG_3.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 585 2.43 0.00 0 9 100 2 515.30194 1029.59661 2.59 36.87 2811 2811 MS2 15/16 Linfeng_20120514_rIgG_6.raw High TRLEQEIATYR Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 500 2.43 0.00 1 0 100 2 690.36963 1379.73198 3.03 36.40 2702 2702 MS2 11/20 Linfeng_20120514_rIgG_1.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 547 2.56 0.00 0 6 100 2 651.33234 1301.65740 -0.78 25.32 1452 1452 MS2 15/22 Linfeng_20120514_rIgG_2.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 610 2.64 0.00 0 14 100 2 515.30127 1029.59526 1.28 37.53 3036 3036 MS2 15/16 Linfeng_20120514_rIgG_2.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 563 2.71 0.00 0 37 100 2 515.30139 1029.59551 1.52 37.08 2751 2751 MS2 12/16 Linfeng_20120514_rIgG_10.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 615 2.80 0.00 0 2 100 2 515.30182 1029.59636 2.35 36.94 2812 2812 MS2 15/16 Linfeng_20120514_rIgG_3.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 591 2.85 0.00 0 7 100 2 515.30109 1029.59490 0.93 38.00 2937 2937 MS2 14/16 Linfeng_20120514_rIgG_3.raw High TRLEQEIATYR Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 510 3.04 0.00 1 4 100 2 690.36951 1379.73174 2.85 36.20 2681 2681 MS2 15/20 Linfeng_20120514_rIgG_1.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 613 3.16 0.00 0 4 100 2 515.30206 1029.59685 2.82 37.77 2873 2873 MS2 14/16 Linfeng_20120514_rIgG_1.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 555 3.17 0.00 0 10 100 2 515.30255 1029.59783 3.77 36.74 2743 2743 MS2 15/16 Linfeng_20120514_rIgG_1.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 603 3.44 0.00 0 5 100 2 515.30164 1029.59599 1.99 36.97 2816 2816 MS2 14/16 Linfeng_20120514_rIgG_3.raw IPI00037070.3 54 kDa protein 10.73 1 0 5 10 0.00 30.35 10.73 5 10 494 53.5 5.86 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High DAGTIAGLNVLR Unambiguous 4 4 IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00910870.1 CID 1.0000 0.0000 1 1 546 2.22 0.00 0 33 100 2 600.34082 1199.67436 0.03 43.37 3116 3116 MS2 12/22 Linfeng_20120515_BRCA1_4.raw High TTPSYVAFTDTER Unambiguous 10 10 IPI00304925.5;IPI00007702.1;IPI00339269.1;IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00845339.1;IPI00910870.1;IPI00911039.1;IPI00941328.1 CID 1.0000 0.0000 1 1 372 2.36 0.00 0 0 100 2 744.35620 1487.70513 2.56 33.88 2120 2120 MS2 16/24 Linfeng_20120515_BRCA1_4.raw High FEELNADLFR Unambiguous 4 4 IPI00007702.1;IPI00003865.1;IPI00939595.1;IPI00037070.3 CID 1.0000 0.0000 1 1 478 2.61 0.00 0 17 100 2 627.31256 1253.61785 1.36 46.79 3890 3890 MS2 13/18 Linfeng_20120515_BRCA1_4.raw High ARFEELNADLFR Unambiguous 4 4 IPI00007702.1;IPI00003865.1;IPI00939595.1;IPI00037070.3 CID 1.0000 0.0000 1 1 565 2.68 0.00 1 18 100 3 494.25662 1480.75531 0.63 48.01 4179 4179 MS2 20/44 Linfeng_20120515_BRCA1_4.raw High TTPSYVAFTDTER Unambiguous 10 10 IPI00304925.5;IPI00007702.1;IPI00339269.1;IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00845339.1;IPI00910870.1;IPI00911039.1;IPI00941328.1 CID 1.0000 0.0000 1 1 332 2.70 0.00 0 21 100 2 744.35712 1487.70696 3.79 34.89 2274 2274 MS2 16/24 Linfeng_20120515_BRCA1_4.raw High ARFEELNADLFR Unambiguous 4 4 IPI00007702.1;IPI00003865.1;IPI00939595.1;IPI00037070.3 CID 1.0000 0.0000 1 1 574 2.77 0.00 1 2 100 3 494.25644 1480.75476 0.26 48.46 4289 4289 MS2 20/44 Linfeng_20120515_BRCA1_4.raw High IINEPTAAAIAYGLDK Unambiguous 5 5 IPI00007702.1;IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00910870.1 CID 1.0000 0.0000 1 1 500 3.34 0.00 0 14 100 2 830.45135 1659.89543 0.09 45.10 3488 3488 MS2 19/30 Linfeng_20120515_BRCA1_4.raw High IINEPTAAAIAYGLDK Unambiguous 5 5 IPI00007702.1;IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00910870.1 CID 1.0000 0.0000 1 1 584 3.73 0.00 0 47 100 3 553.96954 1659.89408 -0.73 45.28 3532 3532 MS2 28/60 Linfeng_20120515_BRCA1_4.raw High IINEPTAAAIAYGLDK Unambiguous 5 5 IPI00007702.1;IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00910870.1 CID 1.0000 0.0000 1 1 515 3.86 0.00 0 10 100 2 830.45166 1659.89604 0.45 45.49 3580 3580 MS2 21/30 Linfeng_20120515_BRCA1_4.raw High IINEPTAAAIAYGLDK Unambiguous 5 5 IPI00007702.1;IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00910870.1 CID 1.0000 0.0000 1 1 443 4.08 0.00 0 8 100 2 830.45184 1659.89641 0.67 45.39 3558 3558 MS2 21/30 Linfeng_20120515_BRCA1_4.raw IPI00942257.1 58 kDa protein 11.25 1 0 5 79 127.71 11.25 5 46 87.42 9.23 4 33 542 58.3 8.00 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High TAAENEFVTLK Unambiguous 9 9 IPI00942512.1;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00290857.2;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 489 2.00 0.00 0 43 100 2 611.82062 1222.63396 2.05 32.62 2207 2207 MS2 11/20 Linfeng_20120514_rIgG_3.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 630 2.03 0.00 0 3 2 2 665.36591 1329.72453 -1.17 49.04 4475 4475 MS2 11/22 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 436 2.04 0.00 0 32 100 2 632.34998 1263.69267 -1.35 47.14 4939 4939 MS2 16/20 Linfeng_20120515_BRCA1_5.raw High AIGGGLSSVGGGSSTIK Unambiguous 6 6 IPI00300725.7;IPI00299145.9;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 603 2.04 0.00 0 7 100 2 724.39258 1447.77788 1.86 28.30 1585 1585 MS2 14/32 Linfeng_20120515_BRCA1_7.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 780 2.06 0.00 0 53 100 2 602.32391 1203.64055 3.07 36.28 2428 2428 MS2 12/18 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 442 2.08 0.00 0 45 100 2 632.35022 1263.69316 -0.96 46.32 4619 4619 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 458 2.09 0.00 0 39 100 2 632.35022 1263.69316 -0.96 45.94 4524 4524 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 685 2.10 0.00 0 37 100 2 602.32233 1203.63738 0.43 35.52 2738 2738 MS2 11/18 Linfeng_20120514_rIgG_2.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 737 2.12 0.00 0 17 100 2 602.32263 1203.63799 0.94 37.76 2908 2908 MS2 13/18 Linfeng_20120514_rIgG_3.raw High TAAENEFVTLK Unambiguous 9 9 IPI00942512.1;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00290857.2;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 505 2.12 0.00 0 47 100 2 611.82056 1222.63384 1.95 32.68 2216 2216 MS2 11/20 Linfeng_20120514_rIgG_3.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 641 2.16 0.00 0 61 100 2 602.32324 1203.63921 1.95 36.15 2412 2412 MS2 12/18 Linfeng_20120514_rIgG_4.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 783 2.17 0.00 0 51 100 2 602.32373 1203.64018 2.76 36.51 2450 2450 MS2 10/18 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 469 2.18 0.00 0 52 100 2 632.34998 1263.69267 -1.35 47.15 4212 4212 MS2 14/20 Linfeng_20120514_rIgG_9.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 449 2.19 0.00 0 51 100 2 632.34973 1263.69219 -1.74 45.90 4630 4630 MS2 17/20 Linfeng_20120515_BRCA1_5.raw High AIGGGLSSVGGGSSTIK Unambiguous 6 6 IPI00300725.7;IPI00299145.9;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 555 2.24 0.00 0 4 100 2 724.39148 1447.77568 0.35 28.63 1644 1644 MS2 18/32 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 477 2.27 0.00 0 41 100 2 632.34985 1263.69243 -1.54 46.04 4549 4549 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 707 2.31 0.00 0 57 100 2 602.32233 1203.63738 0.43 36.78 2457 2457 MS2 12/18 Linfeng_20120514_rIgG_7.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 458 2.32 0.00 0 54 100 2 632.34973 1263.69219 -1.74 46.58 4686 4686 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 2.36 0.00 0 37 100 2 632.35046 1263.69365 -0.58 46.86 3971 3971 MS2 16/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 492 2.37 0.00 0 60 100 2 632.35114 1263.69499 0.48 46.73 4431 4431 MS2 14/20 Linfeng_20120515_BRCA1_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 470 2.39 0.00 0 30 100 2 632.34888 1263.69048 -3.09 46.46 4770 4770 MS2 17/20 Linfeng_20120515_BRCA1_5.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 750 2.43 0.00 0 19 100 2 602.32220 1203.63713 0.23 36.53 2910 2910 MS2 14/18 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 473 2.46 0.00 0 46 100 2 632.35022 1263.69316 -0.96 46.78 3951 3951 MS2 17/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 464 2.48 0.00 0 36 100 2 632.35065 1263.69402 -0.29 47.09 3873 3873 MS2 17/20 Linfeng_20120515_BRCA1_7.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 723 2.49 0.00 0 14 100 2 602.32245 1203.63762 0.63 36.59 2611 2611 MS2 15/18 Linfeng_20120515_BRCA1_1.raw High AIGGGLSSVGGGSSTIK Unambiguous 6 6 IPI00300725.7;IPI00299145.9;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 527 2.50 0.00 0 0 100 2 724.39105 1447.77483 -0.24 29.31 1676 1676 MS2 16/32 Linfeng_20120515_BRCA1_7.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 472 2.53 0.00 0 15 68 2 632.35034 1263.69341 -0.77 48.85 4961 4961 MS2 18/20 Linfeng_20120514_rIgG_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 484 2.54 0.00 0 36 100 2 632.35083 1263.69438 0.00 47.21 4177 4177 MS2 15/20 Linfeng_20120514_rIgG_3.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 575 2.57 0.00 0 43 100 2 665.36664 1329.72600 -0.07 49.55 4833 4833 MS2 16/22 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 430 2.59 0.00 0 31 100 2 632.35077 1263.69426 -0.09 47.20 3985 3985 MS2 17/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 449 2.61 0.00 0 37 100 2 632.34973 1263.69219 -1.74 47.17 4828 4828 MS2 16/20 Linfeng_20120515_BRCA1_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 453 2.61 0.00 0 63 100 2 632.35052 1263.69377 -0.48 47.45 4110 4110 MS2 16/20 Linfeng_20120514_rIgG_10.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 514 2.61 0.00 0 4 1 2 665.36542 1329.72356 -1.90 49.02 5023 5023 MS2 14/22 Linfeng_20120515_BRCA1_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 506 2.66 0.00 0 46 100 2 632.35114 1263.69499 0.48 47.52 4063 4063 MS2 17/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 476 2.66 0.00 0 29 79 2 632.35144 1263.69560 0.97 48.87 4958 4958 MS2 18/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 473 2.70 0.00 0 30 100 2 632.35040 1263.69353 -0.67 47.22 4210 4210 MS2 16/20 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 492 2.70 0.00 0 40 100 2 632.35089 1263.69451 0.10 46.88 4113 4113 MS2 14/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 483 2.75 0.00 0 26 100 2 632.35126 1263.69524 0.68 45.46 4168 4168 MS2 18/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 447 2.78 0.00 0 48 100 2 632.35089 1263.69451 0.10 47.36 4023 4023 MS2 16/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 463 2.80 0.00 0 31 100 2 632.35107 1263.69487 0.39 46.86 3905 3905 MS2 17/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 488 2.87 0.00 0 81 100 2 632.35071 1263.69414 -0.19 46.97 4488 4488 MS2 16/20 Linfeng_20120515_BRCA1_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 448 2.87 0.00 0 36 100 2 632.35059 1263.69390 -0.38 46.91 4136 4136 MS2 16/20 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 451 2.87 0.00 0 44 100 2 632.35126 1263.69524 0.68 46.57 3752 3752 MS2 16/20 Linfeng_20120515_BRCA1_7.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 470 2.88 0.00 0 38 100 2 632.35089 1263.69451 0.10 47.03 4139 4139 MS2 16/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 459 2.88 0.00 0 53 100 2 632.35059 1263.69390 -0.38 46.42 3866 3866 MS2 17/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 480 2.88 0.00 0 48 100 2 632.35101 1263.69475 0.29 47.36 4243 4243 MS2 17/20 Linfeng_20120515_BRCA1_1.raw High AIGGGLSSVGGGSSTIK Unambiguous 6 6 IPI00300725.7;IPI00299145.9;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 557 2.91 0.00 0 24 100 2 724.39392 1447.78057 3.72 28.47 1754 1754 MS2 19/32 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 462 2.91 0.00 0 45 100 2 632.35052 1263.69377 -0.48 47.07 4019 4019 MS2 16/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 476 2.92 0.00 0 40 100 2 632.35077 1263.69426 -0.09 46.82 3907 3907 MS2 17/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 486 2.94 0.00 0 40 100 2 632.35040 1263.69353 -0.67 47.44 4228 4228 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 499 2.95 0.00 0 58 100 2 632.35107 1263.69487 0.39 47.47 4601 4601 MS2 15/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 2.95 0.00 0 15 75 2 632.34955 1263.69182 -2.03 48.84 4404 4404 MS2 18/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 461 2.95 0.00 0 23 100 2 632.35034 1263.69341 -0.77 48.82 4535 4535 MS2 18/20 Linfeng_20120514_rIgG_5.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 459 2.98 0.00 0 37 100 2 632.35046 1263.69365 -0.58 47.08 4177 4177 MS2 18/20 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 492 2.99 0.00 0 57 100 2 632.35083 1263.69438 0.00 47.56 4082 4082 MS2 17/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 477 3.00 0.00 0 41 100 2 632.35059 1263.69390 -0.38 47.37 4037 4037 MS2 18/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 449 3.01 0.00 0 34 100 2 632.35071 1263.69414 -0.19 47.28 4194 4194 MS2 15/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 3.01 0.00 0 25 100 2 632.35138 1263.69548 0.87 46.23 3756 3756 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 446 3.03 0.00 0 31 100 2 632.35193 1263.69658 1.74 46.21 4314 4314 MS2 17/20 Linfeng_20120514_rIgG_2.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 635 3.04 0.00 0 22 100 2 602.32306 1203.63884 1.65 36.75 2791 2791 MS2 15/18 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 474 3.04 0.00 0 28 100 2 632.35083 1263.69438 0.00 45.97 3839 3839 MS2 17/20 Linfeng_20120514_rIgG_5.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 413 3.05 0.00 0 28 100 2 632.35193 1263.69658 1.74 45.62 4198 4198 MS2 17/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 441 3.06 0.00 0 27 100 2 632.35101 1263.69475 0.29 45.93 3957 3957 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 518 3.10 0.00 0 20 63 2 632.35016 1263.69304 -1.06 48.84 4399 4399 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 3.11 0.00 0 27 100 2 632.35065 1263.69402 -0.29 45.86 3667 3667 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 438 3.13 0.00 0 26 100 2 632.35107 1263.69487 0.39 46.04 3711 3711 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 471 3.15 0.00 0 32 100 2 632.35181 1263.69634 1.55 46.54 4386 4386 MS2 16/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 432 3.16 0.00 0 19 100 2 632.34955 1263.69182 -2.03 48.82 4535 4535 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 419 3.20 0.00 0 33 100 2 632.35156 1263.69585 1.16 46.05 4283 4283 MS2 16/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 491 3.22 0.00 0 38 100 2 632.35114 1263.69499 0.48 46.67 4076 4076 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 422 3.22 0.00 0 24 100 2 632.35083 1263.69438 0.00 45.90 3141 3141 MS2 17/20 Linfeng_20120515_BRCA1_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 374 3.22 0.00 0 19 100 2 632.35010 1263.69292 -1.16 45.76 3935 3935 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 435 3.24 0.00 0 24 100 2 632.35028 1263.69328 -0.87 45.64 3920 3920 MS2 18/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 457 3.24 0.00 0 33 100 2 632.35156 1263.69585 1.16 46.60 3844 3844 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 446 3.29 0.00 0 30 81 2 632.34961 1263.69194 -1.93 48.82 4861 4861 MS2 18/20 Linfeng_20120514_rIgG_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 494 3.30 0.00 0 53 100 2 632.35089 1263.69451 0.10 47.25 4062 4062 MS2 16/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 472 3.30 0.00 0 26 100 2 632.35095 1263.69463 0.19 45.84 3132 3132 MS2 17/20 Linfeng_20120515_BRCA1_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 422 3.41 0.00 0 25 100 2 632.35077 1263.69426 -0.09 46.13 3994 3994 MS2 17/20 Linfeng_20120514_rIgG_3.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 510 3.72 0.00 0 7 3 2 665.36542 1329.72356 -1.90 49.00 4513 4513 MS2 19/22 Linfeng_20120514_rIgG_10.raw IPI00956313.1 58 kDa protein 11.25 1 0 5 79 127.71 11.25 5 46 87.42 9.23 4 33 542 58.3 8.00 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High TAAENEFVTLK Unambiguous 9 9 IPI00942512.1;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00290857.2;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 489 2.00 0.00 0 43 100 2 611.82062 1222.63396 2.05 32.62 2207 2207 MS2 11/20 Linfeng_20120514_rIgG_3.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 630 2.03 0.00 0 3 2 2 665.36591 1329.72453 -1.17 49.04 4475 4475 MS2 11/22 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 436 2.04 0.00 0 32 100 2 632.34998 1263.69267 -1.35 47.14 4939 4939 MS2 16/20 Linfeng_20120515_BRCA1_5.raw High AIGGGLSSVGGGSSTIK Unambiguous 6 6 IPI00300725.7;IPI00299145.9;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 603 2.04 0.00 0 7 100 2 724.39258 1447.77788 1.86 28.30 1585 1585 MS2 14/32 Linfeng_20120515_BRCA1_7.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 780 2.06 0.00 0 53 100 2 602.32391 1203.64055 3.07 36.28 2428 2428 MS2 12/18 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 442 2.08 0.00 0 45 100 2 632.35022 1263.69316 -0.96 46.32 4619 4619 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 458 2.09 0.00 0 39 100 2 632.35022 1263.69316 -0.96 45.94 4524 4524 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 685 2.10 0.00 0 37 100 2 602.32233 1203.63738 0.43 35.52 2738 2738 MS2 11/18 Linfeng_20120514_rIgG_2.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 737 2.12 0.00 0 17 100 2 602.32263 1203.63799 0.94 37.76 2908 2908 MS2 13/18 Linfeng_20120514_rIgG_3.raw High TAAENEFVTLK Unambiguous 9 9 IPI00942512.1;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00290857.2;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 505 2.12 0.00 0 47 100 2 611.82056 1222.63384 1.95 32.68 2216 2216 MS2 11/20 Linfeng_20120514_rIgG_3.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 641 2.16 0.00 0 61 100 2 602.32324 1203.63921 1.95 36.15 2412 2412 MS2 12/18 Linfeng_20120514_rIgG_4.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 783 2.17 0.00 0 51 100 2 602.32373 1203.64018 2.76 36.51 2450 2450 MS2 10/18 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 469 2.18 0.00 0 52 100 2 632.34998 1263.69267 -1.35 47.15 4212 4212 MS2 14/20 Linfeng_20120514_rIgG_9.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 449 2.19 0.00 0 51 100 2 632.34973 1263.69219 -1.74 45.90 4630 4630 MS2 17/20 Linfeng_20120515_BRCA1_5.raw High AIGGGLSSVGGGSSTIK Unambiguous 6 6 IPI00300725.7;IPI00299145.9;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 555 2.24 0.00 0 4 100 2 724.39148 1447.77568 0.35 28.63 1644 1644 MS2 18/32 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 477 2.27 0.00 0 41 100 2 632.34985 1263.69243 -1.54 46.04 4549 4549 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 707 2.31 0.00 0 57 100 2 602.32233 1203.63738 0.43 36.78 2457 2457 MS2 12/18 Linfeng_20120514_rIgG_7.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 458 2.32 0.00 0 54 100 2 632.34973 1263.69219 -1.74 46.58 4686 4686 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 2.36 0.00 0 37 100 2 632.35046 1263.69365 -0.58 46.86 3971 3971 MS2 16/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 492 2.37 0.00 0 60 100 2 632.35114 1263.69499 0.48 46.73 4431 4431 MS2 14/20 Linfeng_20120515_BRCA1_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 470 2.39 0.00 0 30 100 2 632.34888 1263.69048 -3.09 46.46 4770 4770 MS2 17/20 Linfeng_20120515_BRCA1_5.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 750 2.43 0.00 0 19 100 2 602.32220 1203.63713 0.23 36.53 2910 2910 MS2 14/18 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 473 2.46 0.00 0 46 100 2 632.35022 1263.69316 -0.96 46.78 3951 3951 MS2 17/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 464 2.48 0.00 0 36 100 2 632.35065 1263.69402 -0.29 47.09 3873 3873 MS2 17/20 Linfeng_20120515_BRCA1_7.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 723 2.49 0.00 0 14 100 2 602.32245 1203.63762 0.63 36.59 2611 2611 MS2 15/18 Linfeng_20120515_BRCA1_1.raw High AIGGGLSSVGGGSSTIK Unambiguous 6 6 IPI00300725.7;IPI00299145.9;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 527 2.50 0.00 0 0 100 2 724.39105 1447.77483 -0.24 29.31 1676 1676 MS2 16/32 Linfeng_20120515_BRCA1_7.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 472 2.53 0.00 0 15 68 2 632.35034 1263.69341 -0.77 48.85 4961 4961 MS2 18/20 Linfeng_20120514_rIgG_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 484 2.54 0.00 0 36 100 2 632.35083 1263.69438 0.00 47.21 4177 4177 MS2 15/20 Linfeng_20120514_rIgG_3.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 575 2.57 0.00 0 43 100 2 665.36664 1329.72600 -0.07 49.55 4833 4833 MS2 16/22 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 430 2.59 0.00 0 31 100 2 632.35077 1263.69426 -0.09 47.20 3985 3985 MS2 17/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 449 2.61 0.00 0 37 100 2 632.34973 1263.69219 -1.74 47.17 4828 4828 MS2 16/20 Linfeng_20120515_BRCA1_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 453 2.61 0.00 0 63 100 2 632.35052 1263.69377 -0.48 47.45 4110 4110 MS2 16/20 Linfeng_20120514_rIgG_10.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 514 2.61 0.00 0 4 1 2 665.36542 1329.72356 -1.90 49.02 5023 5023 MS2 14/22 Linfeng_20120515_BRCA1_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 506 2.66 0.00 0 46 100 2 632.35114 1263.69499 0.48 47.52 4063 4063 MS2 17/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 476 2.66 0.00 0 29 79 2 632.35144 1263.69560 0.97 48.87 4958 4958 MS2 18/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 473 2.70 0.00 0 30 100 2 632.35040 1263.69353 -0.67 47.22 4210 4210 MS2 16/20 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 492 2.70 0.00 0 40 100 2 632.35089 1263.69451 0.10 46.88 4113 4113 MS2 14/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 483 2.75 0.00 0 26 100 2 632.35126 1263.69524 0.68 45.46 4168 4168 MS2 18/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 447 2.78 0.00 0 48 100 2 632.35089 1263.69451 0.10 47.36 4023 4023 MS2 16/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 463 2.80 0.00 0 31 100 2 632.35107 1263.69487 0.39 46.86 3905 3905 MS2 17/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 488 2.87 0.00 0 81 100 2 632.35071 1263.69414 -0.19 46.97 4488 4488 MS2 16/20 Linfeng_20120515_BRCA1_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 448 2.87 0.00 0 36 100 2 632.35059 1263.69390 -0.38 46.91 4136 4136 MS2 16/20 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 451 2.87 0.00 0 44 100 2 632.35126 1263.69524 0.68 46.57 3752 3752 MS2 16/20 Linfeng_20120515_BRCA1_7.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 470 2.88 0.00 0 38 100 2 632.35089 1263.69451 0.10 47.03 4139 4139 MS2 16/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 459 2.88 0.00 0 53 100 2 632.35059 1263.69390 -0.38 46.42 3866 3866 MS2 17/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 480 2.88 0.00 0 48 100 2 632.35101 1263.69475 0.29 47.36 4243 4243 MS2 17/20 Linfeng_20120515_BRCA1_1.raw High AIGGGLSSVGGGSSTIK Unambiguous 6 6 IPI00300725.7;IPI00299145.9;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 557 2.91 0.00 0 24 100 2 724.39392 1447.78057 3.72 28.47 1754 1754 MS2 19/32 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 462 2.91 0.00 0 45 100 2 632.35052 1263.69377 -0.48 47.07 4019 4019 MS2 16/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 476 2.92 0.00 0 40 100 2 632.35077 1263.69426 -0.09 46.82 3907 3907 MS2 17/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 486 2.94 0.00 0 40 100 2 632.35040 1263.69353 -0.67 47.44 4228 4228 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 499 2.95 0.00 0 58 100 2 632.35107 1263.69487 0.39 47.47 4601 4601 MS2 15/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 2.95 0.00 0 15 75 2 632.34955 1263.69182 -2.03 48.84 4404 4404 MS2 18/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 461 2.95 0.00 0 23 100 2 632.35034 1263.69341 -0.77 48.82 4535 4535 MS2 18/20 Linfeng_20120514_rIgG_5.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 459 2.98 0.00 0 37 100 2 632.35046 1263.69365 -0.58 47.08 4177 4177 MS2 18/20 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 492 2.99 0.00 0 57 100 2 632.35083 1263.69438 0.00 47.56 4082 4082 MS2 17/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 477 3.00 0.00 0 41 100 2 632.35059 1263.69390 -0.38 47.37 4037 4037 MS2 18/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 449 3.01 0.00 0 34 100 2 632.35071 1263.69414 -0.19 47.28 4194 4194 MS2 15/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 3.01 0.00 0 25 100 2 632.35138 1263.69548 0.87 46.23 3756 3756 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 446 3.03 0.00 0 31 100 2 632.35193 1263.69658 1.74 46.21 4314 4314 MS2 17/20 Linfeng_20120514_rIgG_2.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 635 3.04 0.00 0 22 100 2 602.32306 1203.63884 1.65 36.75 2791 2791 MS2 15/18 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 474 3.04 0.00 0 28 100 2 632.35083 1263.69438 0.00 45.97 3839 3839 MS2 17/20 Linfeng_20120514_rIgG_5.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 413 3.05 0.00 0 28 100 2 632.35193 1263.69658 1.74 45.62 4198 4198 MS2 17/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 441 3.06 0.00 0 27 100 2 632.35101 1263.69475 0.29 45.93 3957 3957 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 518 3.10 0.00 0 20 63 2 632.35016 1263.69304 -1.06 48.84 4399 4399 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 3.11 0.00 0 27 100 2 632.35065 1263.69402 -0.29 45.86 3667 3667 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 438 3.13 0.00 0 26 100 2 632.35107 1263.69487 0.39 46.04 3711 3711 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 471 3.15 0.00 0 32 100 2 632.35181 1263.69634 1.55 46.54 4386 4386 MS2 16/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 432 3.16 0.00 0 19 100 2 632.34955 1263.69182 -2.03 48.82 4535 4535 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 419 3.20 0.00 0 33 100 2 632.35156 1263.69585 1.16 46.05 4283 4283 MS2 16/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 491 3.22 0.00 0 38 100 2 632.35114 1263.69499 0.48 46.67 4076 4076 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 422 3.22 0.00 0 24 100 2 632.35083 1263.69438 0.00 45.90 3141 3141 MS2 17/20 Linfeng_20120515_BRCA1_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 374 3.22 0.00 0 19 100 2 632.35010 1263.69292 -1.16 45.76 3935 3935 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 435 3.24 0.00 0 24 100 2 632.35028 1263.69328 -0.87 45.64 3920 3920 MS2 18/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 457 3.24 0.00 0 33 100 2 632.35156 1263.69585 1.16 46.60 3844 3844 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 446 3.29 0.00 0 30 81 2 632.34961 1263.69194 -1.93 48.82 4861 4861 MS2 18/20 Linfeng_20120514_rIgG_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 494 3.30 0.00 0 53 100 2 632.35089 1263.69451 0.10 47.25 4062 4062 MS2 16/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 472 3.30 0.00 0 26 100 2 632.35095 1263.69463 0.19 45.84 3132 3132 MS2 17/20 Linfeng_20120515_BRCA1_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 422 3.41 0.00 0 25 100 2 632.35077 1263.69426 -0.09 46.13 3994 3994 MS2 17/20 Linfeng_20120514_rIgG_3.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 510 3.72 0.00 0 7 3 2 665.36542 1329.72356 -1.90 49.00 4513 4513 MS2 19/22 Linfeng_20120514_rIgG_10.raw IPI00908963.1 ATP synthase subunit alpha 9.04 1 0 4 5 12.37 9.04 4 5 531 57.5 9.22 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High AVDSLVPIGR Unambiguous 4 4 IPI00440493.2;IPI00471928.5;IPI00549805.3;IPI00908963.1 CID 1.0000 0.0000 1 1 320 2.21 0.00 0 33 100 2 513.80127 1026.59526 0.96 35.79 2979 2979 MS2 13/18 Linfeng_20120515_BRCA1_5.raw High HALIIYDDLSK Unambiguous 2 2 IPI00440493.2;IPI00908963.1 CID 1.0000 0.0000 1 1 548 2.29 0.00 0 25 100 2 644.35101 1287.69475 0.29 39.82 3563 3563 MS2 12/20 Linfeng_20120515_BRCA1_5.raw High AVDSLVPIGR Unambiguous 4 4 IPI00440493.2;IPI00471928.5;IPI00549805.3;IPI00908963.1 CID 1.0000 0.0000 1 1 336 2.30 0.00 0 24 100 2 513.80139 1026.59551 1.19 34.78 2760 2760 MS2 13/18 Linfeng_20120515_BRCA1_5.raw High TSIAIDTIINQK Unambiguous 2 2 IPI00440493.2;IPI00908963.1 CID 1.0000 0.0000 1 1 469 2.32 0.00 0 19 100 2 658.87518 1316.74309 0.78 41.50 3730 3730 MS2 12/22 Linfeng_20120515_BRCA1_5.raw High ILGADTSVDLEETGR Unambiguous 4 4 IPI00440493.2;IPI00471928.5;IPI00549805.3;IPI00908963.1 CID 1.0000 0.0000 1 1 545 3.25 0.00 0 5 100 2 788.39850 1575.78972 2.27 35.16 2842 2842 MS2 18/28 Linfeng_20120515_BRCA1_5.raw IPI00440493.2 "ATP synthase subunit alpha, mitochondrial" 10.85 1 0 5 12 32.61 10.85 5 12 553 59.7 9.13 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High AVDSLVPIGR Unambiguous 4 4 IPI00440493.2;IPI00471928.5;IPI00549805.3;IPI00908963.1 CID 1.0000 0.0000 1 1 320 2.21 0.00 0 33 100 2 513.80127 1026.59526 0.96 35.79 2979 2979 MS2 13/18 Linfeng_20120515_BRCA1_5.raw High HALIIYDDLSK Unambiguous 2 2 IPI00440493.2;IPI00908963.1 CID 1.0000 0.0000 1 1 548 2.29 0.00 0 25 100 2 644.35101 1287.69475 0.29 39.82 3563 3563 MS2 12/20 Linfeng_20120515_BRCA1_5.raw High AVDSLVPIGR Unambiguous 4 4 IPI00440493.2;IPI00471928.5;IPI00549805.3;IPI00908963.1 CID 1.0000 0.0000 1 1 336 2.30 0.00 0 24 100 2 513.80139 1026.59551 1.19 34.78 2760 2760 MS2 13/18 Linfeng_20120515_BRCA1_5.raw High TSIAIDTIINQK Unambiguous 2 2 IPI00440493.2;IPI00908963.1 CID 1.0000 0.0000 1 1 469 2.32 0.00 0 19 100 2 658.87518 1316.74309 0.78 41.50 3730 3730 MS2 12/22 Linfeng_20120515_BRCA1_5.raw High VVDALGNAIDGK Unambiguous 3 3 IPI00440493.2;IPI00471928.5;IPI00549805.3 CID 1.0000 0.0000 1 1 489 2.56 0.00 0 10 100 2 586.32074 1171.63420 2.05 29.94 1861 1861 MS2 13/22 Linfeng_20120515_BRCA1_5.raw High VVDALGNAIDGK Unambiguous 3 3 IPI00440493.2;IPI00471928.5;IPI00549805.3 CID 1.0000 0.0000 1 1 500 2.58 0.00 0 5 100 2 586.32050 1171.63371 1.63 30.22 1890 1890 MS2 15/22 Linfeng_20120515_BRCA1_5.raw High VVDALGNAIDGK Unambiguous 3 3 IPI00440493.2;IPI00471928.5;IPI00549805.3 CID 1.0000 0.0000 1 1 528 2.82 0.00 0 33 100 2 586.32111 1171.63494 2.67 31.17 2017 2017 MS2 16/22 Linfeng_20120515_BRCA1_5.raw High VVDALGNAIDGK Unambiguous 3 3 IPI00440493.2;IPI00471928.5;IPI00549805.3 CID 1.0000 0.0000 1 1 510 2.83 0.00 0 21 100 2 586.32074 1171.63420 2.05 30.34 1905 1905 MS2 18/22 Linfeng_20120515_BRCA1_5.raw High VVDALGNAIDGK Unambiguous 3 3 IPI00440493.2;IPI00471928.5;IPI00549805.3 CID 1.0000 0.0000 1 1 512 2.86 0.00 0 14 100 2 586.32080 1171.63432 2.15 30.30 1900 1900 MS2 17/22 Linfeng_20120515_BRCA1_5.raw High VVDALGNAIDGK Unambiguous 3 3 IPI00440493.2;IPI00471928.5;IPI00549805.3 CID 1.0000 0.0000 1 1 525 3.06 0.00 0 12 100 2 586.32074 1171.63420 2.05 30.26 1894 1894 MS2 18/22 Linfeng_20120515_BRCA1_5.raw High ILGADTSVDLEETGR Unambiguous 4 4 IPI00440493.2;IPI00471928.5;IPI00549805.3;IPI00908963.1 CID 1.0000 0.0000 1 1 545 3.25 0.00 0 5 100 2 788.39850 1575.78972 2.27 35.16 2842 2842 MS2 18/28 Linfeng_20120515_BRCA1_5.raw High VVDALGNAIDGK Unambiguous 3 3 IPI00440493.2;IPI00471928.5;IPI00549805.3 CID 1.0000 0.0000 1 1 492 3.53 0.00 0 42 100 2 586.32092 1171.63457 2.36 30.90 1976 1976 MS2 16/22 Linfeng_20120515_BRCA1_5.raw IPI00844578.1 ATP-dependent RNA helicase A 2.36 1 3 3 6 13.63 2.36 3 6 0.00 1270 140.9 6.84 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High DFVNYLVR Unambiguous 1 1 IPI00844578.1 CID 1.0000 0.0000 1 1 429 2.01 0.00 0 40 100 2 513.27496 1025.54265 1.13 46.63 4070 4070 MS2 12/14 Linfeng_20120514_rIgG_3.raw High LGGIGQFLAK Unambiguous 1 1 IPI00844578.1 CID 1.0000 0.0000 1 1 249 2.15 0.00 0 28 100 2 502.30051 1003.59374 0.18 45.18 3519 3519 MS2 12/18 Linfeng_20120514_rIgG_4.raw High LGGIGQFLAK Unambiguous 1 1 IPI00844578.1 CID 1.0000 0.0000 1 1 263 2.15 0.00 0 51 100 2 502.30090 1003.59453 0.98 45.59 3617 3617 MS2 13/18 Linfeng_20120514_rIgG_4.raw High LGGIGQFLAK Unambiguous 1 1 IPI00844578.1 CID 1.0000 0.0000 1 1 269 2.27 0.00 0 43 100 2 502.30026 1003.59325 -0.30 45.51 3600 3600 MS2 12/18 Linfeng_20120514_rIgG_4.raw High DFVNYLVR Unambiguous 1 1 IPI00844578.1 CID 1.0000 0.0000 1 1 374 2.48 0.00 0 33 100 2 513.27454 1025.54180 0.30 46.77 4093 4093 MS2 12/14 Linfeng_20120514_rIgG_3.raw High AAmEALVVEVTK Unambiguous 1 1 IPI00844578.1 M3(Oxidation) CID 1.0000 0.0000 1 1 589 2.57 0.00 0 10 100 2 638.84613 1276.68498 2.50 32.16 2144 2144 MS2 16/22 Linfeng_20120514_rIgG_3.raw IPI00027273.3 BRCA1 protein 3.84 1 0 4 7 19.34 3.84 4 7 1354 150.2 5.31 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High IPPLFPIK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 113 2.03 0.00 0 0 27 2 462.79968 924.59209 0.36 48.97 4299 4299 MS2 12/14 Linfeng_20120515_BRCA1_3.raw High LGVLQPEVYK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 508 2.36 0.00 0 44 100 2 573.33374 1145.66020 3.21 35.79 2393 2393 MS2 11/18 Linfeng_20120515_BRCA1_4.raw High LGVLQPEVYK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 437 2.42 0.00 0 9 100 2 573.33313 1145.65898 2.14 36.18 2264 2264 MS2 11/18 Linfeng_20120515_BRCA1_2.raw Medium HIHALELVVSR Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 336 2.44 0.00 0 30 100 3 425.25137 1273.73957 1.56 47.75 3993 3993 MS2 23/40 Linfeng_20120515_BRCA1_3.raw High NESNIKPVQTVNITAGFPVVGQK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 301 3.01 0.00 1 18 100 3 814.11078 2440.31778 -0.73 44.51 3226 3226 MS2 25/88 Linfeng_20120515_BRCA1_3.raw High NESNIKPVQTVNITAGFPVVGQK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 308 3.52 0.00 1 8 100 3 814.11060 2440.31723 -0.95 44.79 3294 3294 MS2 24/88 Linfeng_20120515_BRCA1_3.raw High NESNIKPVQTVNITAGFPVVGQK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 256 3.56 0.00 1 28 100 3 814.11230 2440.32236 1.15 45.07 3360 3360 MS2 22/88 Linfeng_20120515_BRCA1_3.raw IPI00930130.2 "cDNA FLJ11352 fis, clone HEMBA1000020, highly similar to Tubulin beta-2C chain" 7.81 1 0 3 6 14.35 7.81 3 6 397 44.6 4.93 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High ISEQFTAmFR Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 M8(Oxidation) CID 1.0000 0.0000 1 1 376 2.17 0.00 0 54 100 2 623.30212 1245.59697 2.95 36.21 3064 3064 MS2 12/18 Linfeng_20120515_BRCA1_5.raw High ISEQFTAmFR Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 M8(Oxidation) CID 1.0000 0.0000 1 1 380 2.24 0.00 0 55 100 2 623.30157 1245.59587 2.07 36.39 3097 3097 MS2 14/18 Linfeng_20120515_BRCA1_5.raw High YLTVAAVFR Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 CID 1.0000 0.0000 1 1 331 2.27 0.00 0 27 100 2 520.30072 1039.59416 0.61 47.83 5108 5108 MS2 15/16 Linfeng_20120515_BRCA1_5.raw High ImNTFSVVPSPK Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 M2(Oxidation) CID 1.0000 0.0000 1 1 561 2.44 0.00 0 27 100 2 668.35333 1335.69939 1.21 34.89 2785 2785 MS2 11/22 Linfeng_20120515_BRCA1_5.raw High ImNTFSVVPSPK Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 M2(Oxidation) CID 1.0000 0.0000 1 1 575 2.57 0.00 0 31 100 2 668.35370 1335.70012 1.76 34.81 2768 2768 MS2 12/22 Linfeng_20120515_BRCA1_5.raw High ImNTFSVVPSPK Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 M2(Oxidation) CID 1.0000 0.0000 1 1 565 2.67 0.00 0 17 100 2 668.35223 1335.69719 -0.43 34.25 2638 2638 MS2 11/22 Linfeng_20120515_BRCA1_5.raw IPI00793589.2 "cDNA FLJ51740, highly similar to Dolichyl-diphosphooligosaccharide--proteinglycosyltransferase 67 kDa subunit" 7.92 1 0 3 6 17.64 7.92 3 6 581 65.8 6.15 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High ALTSEIALLQSR Unambiguous 2 2 IPI00025874.2;IPI00793589.2 CID 1.0000 0.0000 1 1 431 2.32 0.00 0 63 100 2 651.37469 1301.74211 -0.22 45.87 3670 3670 MS2 13/22 Linfeng_20120515_BRCA1_4.raw Medium APDELHYTYLDTFGRPVIVAYK Unambiguous 2 2 IPI00025874.2;IPI00793589.2 CID 1.0000 0.0000 1 1 568 2.66 0.00 1 9 52 4 642.83356 2568.31240 -0.38 48.67 4342 4342 MS2 34/126 Linfeng_20120515_BRCA1_4.raw High NIEIDSPYEISR Unambiguous 2 2 IPI00025874.2;IPI00793589.2 CID 1.0000 0.0000 1 1 542 2.84 0.00 0 10 100 2 718.35834 1435.70940 2.09 37.66 2655 2655 MS2 17/22 Linfeng_20120515_BRCA1_4.raw High ALTSEIALLQSR Unambiguous 2 2 IPI00025874.2;IPI00793589.2 CID 1.0000 0.0000 1 1 434 3.05 0.00 0 29 100 2 651.37469 1301.74211 -0.22 45.67 3624 3624 MS2 17/22 Linfeng_20120515_BRCA1_4.raw High ALTSEIALLQSR Unambiguous 2 2 IPI00025874.2;IPI00793589.2 CID 1.0000 0.0000 1 1 432 3.37 0.00 0 4 100 2 651.37518 1301.74309 0.53 45.24 3521 3521 MS2 18/22 Linfeng_20120515_BRCA1_4.raw High ALTSEIALLQSR Unambiguous 2 2 IPI00025874.2;IPI00793589.2 CID 1.0000 0.0000 1 1 430 3.40 0.00 0 14 100 2 651.37494 1301.74260 0.15 45.50 3582 3582 MS2 18/22 Linfeng_20120515_BRCA1_4.raw IPI00922694.1 "cDNA FLJ51903, highly similar to Stress-70 protein, mitochondrial" 5.85 1 0 3 8 0.00 25.18 5.85 3 8 632 69.9 6.34 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High VQQTVQDLFGR Unambiguous 2 2 IPI00007765.5;IPI00922694.1 CID 1.0000 0.0000 1 1 671 2.24 0.00 0 15 100 2 645.84387 1290.68047 0.26 39.99 2838 2838 MS2 10/20 Linfeng_20120515_BRCA1_4.raw High DAGQISGLNVLR Unambiguous 2 2 IPI00007765.5;IPI00922694.1 CID 1.0000 0.0000 1 1 577 2.37 0.00 0 4 100 2 621.84369 1242.68010 -0.03 39.60 2813 2813 MS2 11/22 Linfeng_20120515_BRCA1_4.raw High SDIGEVILVGGmTR Unambiguous 2 2 IPI00007765.5;IPI00922694.1 M12(Oxidation) CID 1.0000 0.0000 1 1 614 2.77 0.00 0 8 100 2 731.88275 1462.75823 0.77 42.74 3049 3049 MS2 14/26 Linfeng_20120515_BRCA1_4.raw High SDIGEVILVGGmTR Unambiguous 2 2 IPI00007765.5;IPI00922694.1 M12(Oxidation) CID 1.0000 0.0000 1 1 641 3.07 0.00 0 14 100 2 731.88245 1462.75762 0.36 42.08 2984 2984 MS2 16/26 Linfeng_20120515_BRCA1_4.raw High SDIGEVILVGGmTR Unambiguous 2 2 IPI00007765.5;IPI00922694.1 M12(Oxidation) CID 1.0000 0.0000 1 1 634 3.24 0.00 0 2 100 2 731.88239 1462.75749 0.27 42.25 3001 3001 MS2 16/26 Linfeng_20120515_BRCA1_4.raw High SDIGEVILVGGmTR Unambiguous 2 2 IPI00007765.5;IPI00922694.1 M12(Oxidation) CID 1.0000 0.0000 1 1 583 3.65 0.00 0 4 100 2 731.88293 1462.75859 1.02 42.66 3038 3038 MS2 19/26 Linfeng_20120515_BRCA1_4.raw High SDIGEVILVGGmTR Unambiguous 2 2 IPI00007765.5;IPI00922694.1 M12(Oxidation) CID 1.0000 0.0000 1 1 598 3.71 0.00 0 3 100 2 731.88287 1462.75847 0.94 42.70 3043 3043 MS2 18/26 Linfeng_20120515_BRCA1_4.raw High SDIGEVILVGGmTR Unambiguous 2 2 IPI00007765.5;IPI00922694.1 M12(Oxidation) CID 1.0000 0.0000 1 1 612 4.14 0.00 0 6 100 2 731.88275 1462.75823 0.77 42.53 3027 3027 MS2 18/26 Linfeng_20120515_BRCA1_4.raw IPI00910718.1 "cDNA FLJ52975, highly similar to Heterogeneous nuclear ribonucleoproteins C" 32.65 1 0 4 34 69.51 32.65 4 20 43.17 32.65 4 14 147 15.7 9.01 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High SDVEAIFSK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 492 2.15 0.00 0 9 100 2 498.25745 995.50762 3.18 34.56 2156 2156 MS2 12/16 Linfeng_20120515_BRCA1_6.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 488 2.20 0.00 0 46 100 2 665.33282 1329.65837 -0.22 45.71 4191 4191 MS2 12/20 Linfeng_20120514_rIgG_8.raw Medium mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 511 2.33 0.00 0 43 100 3 566.97479 1698.90982 0.14 46.04 3527 3527 MS2 17/60 Linfeng_20120515_BRCA1_6.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 471 2.34 0.00 0 41 100 2 665.33405 1329.66081 1.62 45.93 4237 4237 MS2 15/20 Linfeng_20120515_BRCA1_10.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 507 2.34 0.00 0 7 100 2 665.33362 1329.65996 0.98 46.34 4337 4337 MS2 15/20 Linfeng_20120515_BRCA1_10.raw High SDVEAIFSK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 488 2.39 0.00 0 4 100 2 498.25674 995.50621 1.77 34.00 2125 2125 MS2 14/16 Linfeng_20120514_rIgG_7.raw High SDVEAIFSK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 496 2.41 0.00 0 10 100 2 498.25702 995.50676 2.32 35.00 2271 2271 MS2 13/16 Linfeng_20120514_rIgG_7.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 464 2.44 0.00 0 20 100 2 665.33411 1329.66094 1.71 45.75 3490 3490 MS2 15/20 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 550 2.52 0.00 0 45 100 3 566.97455 1698.90909 -0.29 45.43 3385 3385 MS2 25/60 Linfeng_20120515_BRCA1_6.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 468 2.58 0.00 0 14 100 2 665.33289 1329.65849 -0.13 46.58 3905 3905 MS2 14/20 Linfeng_20120514_rIgG_10.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 467 2.66 0.00 0 21 100 2 665.33270 1329.65813 -0.40 45.84 3580 3580 MS2 15/20 Linfeng_20120515_BRCA1_7.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 492 2.95 0.00 0 0 100 2 665.33246 1329.65764 -0.77 46.99 4499 4499 MS2 14/20 Linfeng_20120514_rIgG_8.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 456 3.05 0.00 0 0 59 2 665.33344 1329.65959 0.70 46.53 3643 3643 MS2 17/20 Linfeng_20120514_rIgG_7.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 451 3.08 0.00 0 0 100 2 665.33441 1329.66155 2.17 46.83 3813 3813 MS2 17/20 Linfeng_20120515_BRCA1_7.raw High VFIGNLNTLVVK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 105 3.13 0.00 0 2 5 2 658.90015 1316.79302 -0.53 48.93 4343 4343 MS2 19/22 Linfeng_20120515_BRCA1_7.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 479 3.14 0.00 0 36 100 2 665.33344 1329.65959 0.70 46.06 3782 3782 MS2 12/20 Linfeng_20120514_rIgG_10.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 476 3.14 0.00 0 18 100 2 665.33319 1329.65911 0.33 46.69 4428 4428 MS2 15/20 Linfeng_20120514_rIgG_8.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 500 3.23 0.00 0 10 100 2 665.33215 1329.65703 -1.23 47.75 3923 3923 MS2 17/20 Linfeng_20120514_rIgG_7.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 460 3.28 0.00 0 1 100 2 665.33350 1329.65972 0.79 46.73 3686 3686 MS2 17/20 Linfeng_20120514_rIgG_7.raw High VFIGNLNTLVVK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 140 3.30 0.00 0 10 16 2 658.90002 1316.79277 -0.71 48.92 4234 4234 MS2 20/22 Linfeng_20120515_BRCA1_6.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 479 3.42 0.00 0 1 94 2 665.33325 1329.65923 0.43 46.65 3669 3669 MS2 17/20 Linfeng_20120514_rIgG_7.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 465 3.42 0.00 0 80 100 2 665.33264 1329.65801 -0.49 45.80 3471 3471 MS2 15/20 Linfeng_20120515_BRCA1_6.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 511 3.52 0.00 0 46 100 3 566.97467 1698.90946 -0.08 46.14 3551 3551 MS2 23/60 Linfeng_20120515_BRCA1_6.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 473 3.67 0.00 0 2 100 2 665.33356 1329.65984 0.88 46.80 3707 3707 MS2 17/20 Linfeng_20120515_BRCA1_6.raw High VFIGNLNTLVVK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 142 3.77 0.00 0 1 12 2 658.89978 1316.79228 -1.08 48.92 4212 4212 MS2 20/22 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 492 4.05 0.00 0 39 100 2 849.95941 1698.91155 1.15 46.68 3675 3675 MS2 19/30 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 483 4.24 0.00 0 44 100 2 849.95862 1698.90996 0.22 46.63 3668 3668 MS2 18/30 Linfeng_20120515_BRCA1_6.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 468 4.29 0.00 0 30 100 2 849.95850 1698.90972 0.08 46.43 3622 3622 MS2 19/30 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 533 4.43 0.00 0 46 100 2 849.95782 1698.90837 -0.71 46.78 3696 3696 MS2 19/30 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 497 4.43 0.00 0 44 100 2 849.95728 1698.90727 -1.36 47.32 3821 3821 MS2 19/30 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 552 4.47 0.00 0 53 100 2 849.95947 1698.91167 1.23 46.64 3770 3770 MS2 19/30 Linfeng_20120515_BRCA1_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 476 4.66 0.00 0 34 100 2 849.95923 1698.91118 0.94 46.62 3662 3662 MS2 20/30 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 493 4.74 0.00 0 27 100 2 849.95905 1698.91081 0.72 45.63 3468 3468 MS2 23/30 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 483 4.91 0.00 0 33 100 2 849.95905 1698.91081 0.72 45.49 3441 3441 MS2 21/30 Linfeng_20120514_rIgG_7.raw IPI00910666.1 "cDNA FLJ52993, highly similar to Heterogeneous nuclear ribonucleoprotein C" 35.56 1 0 4 34 69.51 35.56 4 20 43.17 35.56 4 14 135 14.6 9.69 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High SDVEAIFSK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 492 2.15 0.00 0 9 100 2 498.25745 995.50762 3.18 34.56 2156 2156 MS2 12/16 Linfeng_20120515_BRCA1_6.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 488 2.20 0.00 0 46 100 2 665.33282 1329.65837 -0.22 45.71 4191 4191 MS2 12/20 Linfeng_20120514_rIgG_8.raw Medium mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 511 2.33 0.00 0 43 100 3 566.97479 1698.90982 0.14 46.04 3527 3527 MS2 17/60 Linfeng_20120515_BRCA1_6.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 471 2.34 0.00 0 41 100 2 665.33405 1329.66081 1.62 45.93 4237 4237 MS2 15/20 Linfeng_20120515_BRCA1_10.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 507 2.34 0.00 0 7 100 2 665.33362 1329.65996 0.98 46.34 4337 4337 MS2 15/20 Linfeng_20120515_BRCA1_10.raw High SDVEAIFSK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 488 2.39 0.00 0 4 100 2 498.25674 995.50621 1.77 34.00 2125 2125 MS2 14/16 Linfeng_20120514_rIgG_7.raw High SDVEAIFSK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 496 2.41 0.00 0 10 100 2 498.25702 995.50676 2.32 35.00 2271 2271 MS2 13/16 Linfeng_20120514_rIgG_7.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 464 2.44 0.00 0 20 100 2 665.33411 1329.66094 1.71 45.75 3490 3490 MS2 15/20 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 550 2.52 0.00 0 45 100 3 566.97455 1698.90909 -0.29 45.43 3385 3385 MS2 25/60 Linfeng_20120515_BRCA1_6.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 468 2.58 0.00 0 14 100 2 665.33289 1329.65849 -0.13 46.58 3905 3905 MS2 14/20 Linfeng_20120514_rIgG_10.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 467 2.66 0.00 0 21 100 2 665.33270 1329.65813 -0.40 45.84 3580 3580 MS2 15/20 Linfeng_20120515_BRCA1_7.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 492 2.95 0.00 0 0 100 2 665.33246 1329.65764 -0.77 46.99 4499 4499 MS2 14/20 Linfeng_20120514_rIgG_8.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 456 3.05 0.00 0 0 59 2 665.33344 1329.65959 0.70 46.53 3643 3643 MS2 17/20 Linfeng_20120514_rIgG_7.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 451 3.08 0.00 0 0 100 2 665.33441 1329.66155 2.17 46.83 3813 3813 MS2 17/20 Linfeng_20120515_BRCA1_7.raw High VFIGNLNTLVVK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 105 3.13 0.00 0 2 5 2 658.90015 1316.79302 -0.53 48.93 4343 4343 MS2 19/22 Linfeng_20120515_BRCA1_7.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 479 3.14 0.00 0 36 100 2 665.33344 1329.65959 0.70 46.06 3782 3782 MS2 12/20 Linfeng_20120514_rIgG_10.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 476 3.14 0.00 0 18 100 2 665.33319 1329.65911 0.33 46.69 4428 4428 MS2 15/20 Linfeng_20120514_rIgG_8.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 500 3.23 0.00 0 10 100 2 665.33215 1329.65703 -1.23 47.75 3923 3923 MS2 17/20 Linfeng_20120514_rIgG_7.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 460 3.28 0.00 0 1 100 2 665.33350 1329.65972 0.79 46.73 3686 3686 MS2 17/20 Linfeng_20120514_rIgG_7.raw High VFIGNLNTLVVK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 140 3.30 0.00 0 10 16 2 658.90002 1316.79277 -0.71 48.92 4234 4234 MS2 20/22 Linfeng_20120515_BRCA1_6.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 479 3.42 0.00 0 1 94 2 665.33325 1329.65923 0.43 46.65 3669 3669 MS2 17/20 Linfeng_20120514_rIgG_7.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 465 3.42 0.00 0 80 100 2 665.33264 1329.65801 -0.49 45.80 3471 3471 MS2 15/20 Linfeng_20120515_BRCA1_6.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 511 3.52 0.00 0 46 100 3 566.97467 1698.90946 -0.08 46.14 3551 3551 MS2 23/60 Linfeng_20120515_BRCA1_6.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 473 3.67 0.00 0 2 100 2 665.33356 1329.65984 0.88 46.80 3707 3707 MS2 17/20 Linfeng_20120515_BRCA1_6.raw High VFIGNLNTLVVK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 142 3.77 0.00 0 1 12 2 658.89978 1316.79228 -1.08 48.92 4212 4212 MS2 20/22 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 492 4.05 0.00 0 39 100 2 849.95941 1698.91155 1.15 46.68 3675 3675 MS2 19/30 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 483 4.24 0.00 0 44 100 2 849.95862 1698.90996 0.22 46.63 3668 3668 MS2 18/30 Linfeng_20120515_BRCA1_6.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 468 4.29 0.00 0 30 100 2 849.95850 1698.90972 0.08 46.43 3622 3622 MS2 19/30 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 533 4.43 0.00 0 46 100 2 849.95782 1698.90837 -0.71 46.78 3696 3696 MS2 19/30 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 497 4.43 0.00 0 44 100 2 849.95728 1698.90727 -1.36 47.32 3821 3821 MS2 19/30 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 552 4.47 0.00 0 53 100 2 849.95947 1698.91167 1.23 46.64 3770 3770 MS2 19/30 Linfeng_20120515_BRCA1_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 476 4.66 0.00 0 34 100 2 849.95923 1698.91118 0.94 46.62 3662 3662 MS2 20/30 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 493 4.74 0.00 0 27 100 2 849.95905 1698.91081 0.72 45.63 3468 3468 MS2 23/30 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 483 4.91 0.00 0 33 100 2 849.95905 1698.91081 0.72 45.49 3441 3441 MS2 21/30 Linfeng_20120514_rIgG_7.raw IPI00909232.1 "cDNA FLJ53542, highly similar to Heterogeneous nuclear ribonucleoproteins C" 22.92 1 0 5 36 73.03 22.92 5 21 47.55 22.92 5 15 288 32.0 8.72 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High SDVEAIFSK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 492 2.15 0.00 0 9 100 2 498.25745 995.50762 3.18 34.56 2156 2156 MS2 12/16 Linfeng_20120515_BRCA1_6.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 488 2.20 0.00 0 46 100 2 665.33282 1329.65837 -0.22 45.71 4191 4191 MS2 12/20 Linfeng_20120514_rIgG_8.raw Medium mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 511 2.33 0.00 0 43 100 3 566.97479 1698.90982 0.14 46.04 3527 3527 MS2 17/60 Linfeng_20120515_BRCA1_6.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 471 2.34 0.00 0 41 100 2 665.33405 1329.66081 1.62 45.93 4237 4237 MS2 15/20 Linfeng_20120515_BRCA1_10.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 507 2.34 0.00 0 7 100 2 665.33362 1329.65996 0.98 46.34 4337 4337 MS2 15/20 Linfeng_20120515_BRCA1_10.raw High SDVEAIFSK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 488 2.39 0.00 0 4 100 2 498.25674 995.50621 1.77 34.00 2125 2125 MS2 14/16 Linfeng_20120514_rIgG_7.raw High SDVEAIFSK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 496 2.41 0.00 0 10 100 2 498.25702 995.50676 2.32 35.00 2271 2271 MS2 13/16 Linfeng_20120514_rIgG_7.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 464 2.44 0.00 0 20 100 2 665.33411 1329.66094 1.71 45.75 3490 3490 MS2 15/20 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 550 2.52 0.00 0 45 100 3 566.97455 1698.90909 -0.29 45.43 3385 3385 MS2 25/60 Linfeng_20120515_BRCA1_6.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 468 2.58 0.00 0 14 100 2 665.33289 1329.65849 -0.13 46.58 3905 3905 MS2 14/20 Linfeng_20120514_rIgG_10.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 467 2.66 0.00 0 21 100 2 665.33270 1329.65813 -0.40 45.84 3580 3580 MS2 15/20 Linfeng_20120515_BRCA1_7.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 492 2.95 0.00 0 0 100 2 665.33246 1329.65764 -0.77 46.99 4499 4499 MS2 14/20 Linfeng_20120514_rIgG_8.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 456 3.05 0.00 0 0 59 2 665.33344 1329.65959 0.70 46.53 3643 3643 MS2 17/20 Linfeng_20120514_rIgG_7.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 451 3.08 0.00 0 0 100 2 665.33441 1329.66155 2.17 46.83 3813 3813 MS2 17/20 Linfeng_20120515_BRCA1_7.raw High VFIGNLNTLVVK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 105 3.13 0.00 0 2 5 2 658.90015 1316.79302 -0.53 48.93 4343 4343 MS2 19/22 Linfeng_20120515_BRCA1_7.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 479 3.14 0.00 0 36 100 2 665.33344 1329.65959 0.70 46.06 3782 3782 MS2 12/20 Linfeng_20120514_rIgG_10.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 476 3.14 0.00 0 18 100 2 665.33319 1329.65911 0.33 46.69 4428 4428 MS2 15/20 Linfeng_20120514_rIgG_8.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 500 3.23 0.00 0 10 100 2 665.33215 1329.65703 -1.23 47.75 3923 3923 MS2 17/20 Linfeng_20120514_rIgG_7.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 460 3.28 0.00 0 1 100 2 665.33350 1329.65972 0.79 46.73 3686 3686 MS2 17/20 Linfeng_20120514_rIgG_7.raw High VFIGNLNTLVVK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 140 3.30 0.00 0 10 16 2 658.90002 1316.79277 -0.71 48.92 4234 4234 MS2 20/22 Linfeng_20120515_BRCA1_6.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 479 3.42 0.00 0 1 94 2 665.33325 1329.65923 0.43 46.65 3669 3669 MS2 17/20 Linfeng_20120514_rIgG_7.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 465 3.42 0.00 0 80 100 2 665.33264 1329.65801 -0.49 45.80 3471 3471 MS2 15/20 Linfeng_20120515_BRCA1_6.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 511 3.52 0.00 0 46 100 3 566.97467 1698.90946 -0.08 46.14 3551 3551 MS2 23/60 Linfeng_20120515_BRCA1_6.raw High SAAEmYGSSFDLDYDFQR Unambiguous 3 3 IPI00216592.2;IPI00759596.1;IPI00909232.1 M5(Oxidation) CID 1.0000 0.0000 1 1 62 3.52 0.00 0 19 100 2 1059.44226 2117.87724 0.70 45.59 3462 3462 MS2 17/34 Linfeng_20120514_rIgG_7.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 473 3.67 0.00 0 2 100 2 665.33356 1329.65984 0.88 46.80 3707 3707 MS2 17/20 Linfeng_20120515_BRCA1_6.raw High VFIGNLNTLVVK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 142 3.77 0.00 0 1 12 2 658.89978 1316.79228 -1.08 48.92 4212 4212 MS2 20/22 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 492 4.05 0.00 0 39 100 2 849.95941 1698.91155 1.15 46.68 3675 3675 MS2 19/30 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 483 4.24 0.00 0 44 100 2 849.95862 1698.90996 0.22 46.63 3668 3668 MS2 18/30 Linfeng_20120515_BRCA1_6.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 468 4.29 0.00 0 30 100 2 849.95850 1698.90972 0.08 46.43 3622 3622 MS2 19/30 Linfeng_20120514_rIgG_7.raw High SAAEmYGSSFDLDYDFQR Unambiguous 3 3 IPI00216592.2;IPI00759596.1;IPI00909232.1 M5(Oxidation) CID 1.0000 0.0000 1 1 60 4.38 0.00 0 11 100 2 1059.44299 2117.87871 1.39 45.52 3404 3404 MS2 19/34 Linfeng_20120515_BRCA1_6.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 533 4.43 0.00 0 46 100 2 849.95782 1698.90837 -0.71 46.78 3696 3696 MS2 19/30 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 497 4.43 0.00 0 44 100 2 849.95728 1698.90727 -1.36 47.32 3821 3821 MS2 19/30 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 552 4.47 0.00 0 53 100 2 849.95947 1698.91167 1.23 46.64 3770 3770 MS2 19/30 Linfeng_20120515_BRCA1_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 476 4.66 0.00 0 34 100 2 849.95923 1698.91118 0.94 46.62 3662 3662 MS2 20/30 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 493 4.74 0.00 0 27 100 2 849.95905 1698.91081 0.72 45.63 3468 3468 MS2 23/30 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 483 4.91 0.00 0 33 100 2 849.95905 1698.91081 0.72 45.49 3441 3441 MS2 21/30 Linfeng_20120514_rIgG_7.raw IPI00909059.5 "cDNA FLJ53910, highly similar to Keratin, type II cytoskeletal 6A" 11.40 1 0 5 79 127.71 11.40 5 46 87.42 9.35 4 33 535 57.8 8.00 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High TAAENEFVTLK Unambiguous 9 9 IPI00942512.1;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00290857.2;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 489 2.00 0.00 0 43 100 2 611.82062 1222.63396 2.05 32.62 2207 2207 MS2 11/20 Linfeng_20120514_rIgG_3.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 630 2.03 0.00 0 3 2 2 665.36591 1329.72453 -1.17 49.04 4475 4475 MS2 11/22 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 436 2.04 0.00 0 32 100 2 632.34998 1263.69267 -1.35 47.14 4939 4939 MS2 16/20 Linfeng_20120515_BRCA1_5.raw High AIGGGLSSVGGGSSTIK Unambiguous 6 6 IPI00300725.7;IPI00299145.9;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 603 2.04 0.00 0 7 100 2 724.39258 1447.77788 1.86 28.30 1585 1585 MS2 14/32 Linfeng_20120515_BRCA1_7.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 780 2.06 0.00 0 53 100 2 602.32391 1203.64055 3.07 36.28 2428 2428 MS2 12/18 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 442 2.08 0.00 0 45 100 2 632.35022 1263.69316 -0.96 46.32 4619 4619 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 458 2.09 0.00 0 39 100 2 632.35022 1263.69316 -0.96 45.94 4524 4524 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 685 2.10 0.00 0 37 100 2 602.32233 1203.63738 0.43 35.52 2738 2738 MS2 11/18 Linfeng_20120514_rIgG_2.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 737 2.12 0.00 0 17 100 2 602.32263 1203.63799 0.94 37.76 2908 2908 MS2 13/18 Linfeng_20120514_rIgG_3.raw High TAAENEFVTLK Unambiguous 9 9 IPI00942512.1;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00290857.2;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 505 2.12 0.00 0 47 100 2 611.82056 1222.63384 1.95 32.68 2216 2216 MS2 11/20 Linfeng_20120514_rIgG_3.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 641 2.16 0.00 0 61 100 2 602.32324 1203.63921 1.95 36.15 2412 2412 MS2 12/18 Linfeng_20120514_rIgG_4.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 783 2.17 0.00 0 51 100 2 602.32373 1203.64018 2.76 36.51 2450 2450 MS2 10/18 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 469 2.18 0.00 0 52 100 2 632.34998 1263.69267 -1.35 47.15 4212 4212 MS2 14/20 Linfeng_20120514_rIgG_9.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 449 2.19 0.00 0 51 100 2 632.34973 1263.69219 -1.74 45.90 4630 4630 MS2 17/20 Linfeng_20120515_BRCA1_5.raw High AIGGGLSSVGGGSSTIK Unambiguous 6 6 IPI00300725.7;IPI00299145.9;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 555 2.24 0.00 0 4 100 2 724.39148 1447.77568 0.35 28.63 1644 1644 MS2 18/32 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 477 2.27 0.00 0 41 100 2 632.34985 1263.69243 -1.54 46.04 4549 4549 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 707 2.31 0.00 0 57 100 2 602.32233 1203.63738 0.43 36.78 2457 2457 MS2 12/18 Linfeng_20120514_rIgG_7.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 458 2.32 0.00 0 54 100 2 632.34973 1263.69219 -1.74 46.58 4686 4686 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 2.36 0.00 0 37 100 2 632.35046 1263.69365 -0.58 46.86 3971 3971 MS2 16/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 492 2.37 0.00 0 60 100 2 632.35114 1263.69499 0.48 46.73 4431 4431 MS2 14/20 Linfeng_20120515_BRCA1_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 470 2.39 0.00 0 30 100 2 632.34888 1263.69048 -3.09 46.46 4770 4770 MS2 17/20 Linfeng_20120515_BRCA1_5.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 750 2.43 0.00 0 19 100 2 602.32220 1203.63713 0.23 36.53 2910 2910 MS2 14/18 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 473 2.46 0.00 0 46 100 2 632.35022 1263.69316 -0.96 46.78 3951 3951 MS2 17/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 464 2.48 0.00 0 36 100 2 632.35065 1263.69402 -0.29 47.09 3873 3873 MS2 17/20 Linfeng_20120515_BRCA1_7.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 723 2.49 0.00 0 14 100 2 602.32245 1203.63762 0.63 36.59 2611 2611 MS2 15/18 Linfeng_20120515_BRCA1_1.raw High AIGGGLSSVGGGSSTIK Unambiguous 6 6 IPI00300725.7;IPI00299145.9;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 527 2.50 0.00 0 0 100 2 724.39105 1447.77483 -0.24 29.31 1676 1676 MS2 16/32 Linfeng_20120515_BRCA1_7.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 472 2.53 0.00 0 15 68 2 632.35034 1263.69341 -0.77 48.85 4961 4961 MS2 18/20 Linfeng_20120514_rIgG_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 484 2.54 0.00 0 36 100 2 632.35083 1263.69438 0.00 47.21 4177 4177 MS2 15/20 Linfeng_20120514_rIgG_3.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 575 2.57 0.00 0 43 100 2 665.36664 1329.72600 -0.07 49.55 4833 4833 MS2 16/22 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 430 2.59 0.00 0 31 100 2 632.35077 1263.69426 -0.09 47.20 3985 3985 MS2 17/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 449 2.61 0.00 0 37 100 2 632.34973 1263.69219 -1.74 47.17 4828 4828 MS2 16/20 Linfeng_20120515_BRCA1_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 453 2.61 0.00 0 63 100 2 632.35052 1263.69377 -0.48 47.45 4110 4110 MS2 16/20 Linfeng_20120514_rIgG_10.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 514 2.61 0.00 0 4 1 2 665.36542 1329.72356 -1.90 49.02 5023 5023 MS2 14/22 Linfeng_20120515_BRCA1_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 506 2.66 0.00 0 46 100 2 632.35114 1263.69499 0.48 47.52 4063 4063 MS2 17/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 476 2.66 0.00 0 29 79 2 632.35144 1263.69560 0.97 48.87 4958 4958 MS2 18/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 473 2.70 0.00 0 30 100 2 632.35040 1263.69353 -0.67 47.22 4210 4210 MS2 16/20 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 492 2.70 0.00 0 40 100 2 632.35089 1263.69451 0.10 46.88 4113 4113 MS2 14/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 483 2.75 0.00 0 26 100 2 632.35126 1263.69524 0.68 45.46 4168 4168 MS2 18/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 447 2.78 0.00 0 48 100 2 632.35089 1263.69451 0.10 47.36 4023 4023 MS2 16/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 463 2.80 0.00 0 31 100 2 632.35107 1263.69487 0.39 46.86 3905 3905 MS2 17/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 488 2.87 0.00 0 81 100 2 632.35071 1263.69414 -0.19 46.97 4488 4488 MS2 16/20 Linfeng_20120515_BRCA1_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 448 2.87 0.00 0 36 100 2 632.35059 1263.69390 -0.38 46.91 4136 4136 MS2 16/20 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 451 2.87 0.00 0 44 100 2 632.35126 1263.69524 0.68 46.57 3752 3752 MS2 16/20 Linfeng_20120515_BRCA1_7.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 470 2.88 0.00 0 38 100 2 632.35089 1263.69451 0.10 47.03 4139 4139 MS2 16/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 459 2.88 0.00 0 53 100 2 632.35059 1263.69390 -0.38 46.42 3866 3866 MS2 17/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 480 2.88 0.00 0 48 100 2 632.35101 1263.69475 0.29 47.36 4243 4243 MS2 17/20 Linfeng_20120515_BRCA1_1.raw High AIGGGLSSVGGGSSTIK Unambiguous 6 6 IPI00300725.7;IPI00299145.9;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 557 2.91 0.00 0 24 100 2 724.39392 1447.78057 3.72 28.47 1754 1754 MS2 19/32 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 462 2.91 0.00 0 45 100 2 632.35052 1263.69377 -0.48 47.07 4019 4019 MS2 16/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 476 2.92 0.00 0 40 100 2 632.35077 1263.69426 -0.09 46.82 3907 3907 MS2 17/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 486 2.94 0.00 0 40 100 2 632.35040 1263.69353 -0.67 47.44 4228 4228 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 499 2.95 0.00 0 58 100 2 632.35107 1263.69487 0.39 47.47 4601 4601 MS2 15/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 2.95 0.00 0 15 75 2 632.34955 1263.69182 -2.03 48.84 4404 4404 MS2 18/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 461 2.95 0.00 0 23 100 2 632.35034 1263.69341 -0.77 48.82 4535 4535 MS2 18/20 Linfeng_20120514_rIgG_5.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 459 2.98 0.00 0 37 100 2 632.35046 1263.69365 -0.58 47.08 4177 4177 MS2 18/20 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 492 2.99 0.00 0 57 100 2 632.35083 1263.69438 0.00 47.56 4082 4082 MS2 17/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 477 3.00 0.00 0 41 100 2 632.35059 1263.69390 -0.38 47.37 4037 4037 MS2 18/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 449 3.01 0.00 0 34 100 2 632.35071 1263.69414 -0.19 47.28 4194 4194 MS2 15/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 3.01 0.00 0 25 100 2 632.35138 1263.69548 0.87 46.23 3756 3756 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 446 3.03 0.00 0 31 100 2 632.35193 1263.69658 1.74 46.21 4314 4314 MS2 17/20 Linfeng_20120514_rIgG_2.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 635 3.04 0.00 0 22 100 2 602.32306 1203.63884 1.65 36.75 2791 2791 MS2 15/18 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 474 3.04 0.00 0 28 100 2 632.35083 1263.69438 0.00 45.97 3839 3839 MS2 17/20 Linfeng_20120514_rIgG_5.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 413 3.05 0.00 0 28 100 2 632.35193 1263.69658 1.74 45.62 4198 4198 MS2 17/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 441 3.06 0.00 0 27 100 2 632.35101 1263.69475 0.29 45.93 3957 3957 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 518 3.10 0.00 0 20 63 2 632.35016 1263.69304 -1.06 48.84 4399 4399 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 3.11 0.00 0 27 100 2 632.35065 1263.69402 -0.29 45.86 3667 3667 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 438 3.13 0.00 0 26 100 2 632.35107 1263.69487 0.39 46.04 3711 3711 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 471 3.15 0.00 0 32 100 2 632.35181 1263.69634 1.55 46.54 4386 4386 MS2 16/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 432 3.16 0.00 0 19 100 2 632.34955 1263.69182 -2.03 48.82 4535 4535 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 419 3.20 0.00 0 33 100 2 632.35156 1263.69585 1.16 46.05 4283 4283 MS2 16/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 491 3.22 0.00 0 38 100 2 632.35114 1263.69499 0.48 46.67 4076 4076 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 422 3.22 0.00 0 24 100 2 632.35083 1263.69438 0.00 45.90 3141 3141 MS2 17/20 Linfeng_20120515_BRCA1_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 374 3.22 0.00 0 19 100 2 632.35010 1263.69292 -1.16 45.76 3935 3935 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 435 3.24 0.00 0 24 100 2 632.35028 1263.69328 -0.87 45.64 3920 3920 MS2 18/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 457 3.24 0.00 0 33 100 2 632.35156 1263.69585 1.16 46.60 3844 3844 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 446 3.29 0.00 0 30 81 2 632.34961 1263.69194 -1.93 48.82 4861 4861 MS2 18/20 Linfeng_20120514_rIgG_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 494 3.30 0.00 0 53 100 2 632.35089 1263.69451 0.10 47.25 4062 4062 MS2 16/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 472 3.30 0.00 0 26 100 2 632.35095 1263.69463 0.19 45.84 3132 3132 MS2 17/20 Linfeng_20120515_BRCA1_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 422 3.41 0.00 0 25 100 2 632.35077 1263.69426 -0.09 46.13 3994 3994 MS2 17/20 Linfeng_20120514_rIgG_3.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 510 3.72 0.00 0 7 3 2 665.36542 1329.72356 -1.90 49.00 4513 4513 MS2 19/22 Linfeng_20120514_rIgG_10.raw IPI00644224.2 "cDNA FLJ54020, highly similar to Heterogeneous nuclear ribonucleoprotein U" 6.89 1 0 4 15 29.18 6.89 4 10 14.98 5.74 3 5 784 86.8 6.43 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High SSGPTSLFAVTVAPPGAR Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 CID 1.0000 0.0000 1 1 511 2.20 0.00 0 14 100 2 857.96124 1714.91521 1.67 47.07 3964 3964 MS2 15/34 Linfeng_20120514_rIgG_4.raw High mcLFAGFQR Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 M1(Oxidation); C2(Carbamidomethyl) CID 1.0000 0.0000 1 1 179 2.20 0.00 0 3 100 2 573.26532 1145.52336 0.22 42.25 3391 3391 MS2 9/16 Linfeng_20120514_rIgG_3.raw High YNILGTNTImDK Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 M10(Oxidation) CID 1.0000 0.0000 1 1 490 2.22 0.00 0 13 100 2 699.85278 1398.69829 3.50 35.29 2318 2318 MS2 16/22 Linfeng_20120514_rIgG_4.raw High YNILGTNTImDK Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 M10(Oxidation) CID 1.0000 0.0000 1 1 507 2.30 0.00 0 17 100 2 699.85236 1398.69744 2.89 35.37 2294 2294 MS2 13/22 Linfeng_20120515_BRCA1_3.raw High SSGPTSLFAVTVAPPGAR Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 CID 1.0000 0.0000 1 1 522 2.31 0.00 0 9 100 2 857.95978 1714.91228 -0.04 48.03 4364 4364 MS2 12/34 Linfeng_20120514_rIgG_3.raw High YNILGTNTImDK Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 M10(Oxidation) CID 1.0000 0.0000 1 1 504 2.37 0.00 0 9 100 2 699.85242 1398.69756 2.97 36.30 2430 2430 MS2 17/22 Linfeng_20120514_rIgG_4.raw High SSGPTSLFAVTVAPPGAR Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 CID 1.0000 0.0000 1 1 488 2.49 0.00 0 30 100 2 857.96118 1714.91509 1.60 47.58 4076 4076 MS2 12/34 Linfeng_20120515_BRCA1_4.raw High YNILGTNTImDK Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 M10(Oxidation) CID 1.0000 0.0000 1 1 503 2.77 0.00 0 8 100 2 699.85248 1398.69768 3.06 36.39 2421 2421 MS2 16/22 Linfeng_20120515_BRCA1_3.raw High SSGPTSLFAVTVAPPGAR Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 CID 1.0000 0.0000 1 1 546 2.78 0.00 0 19 100 2 857.96106 1714.91484 1.45 46.99 4133 4133 MS2 15/34 Linfeng_20120514_rIgG_3.raw High SSGPTSLFAVTVAPPGAR Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 CID 1.0000 0.0000 1 1 536 2.99 0.00 0 27 100 2 857.95972 1714.91216 -0.11 47.21 3863 3863 MS2 14/34 Linfeng_20120515_BRCA1_3.raw High NFILDQTNVSAAAQR Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 CID 1.0000 0.0000 1 1 608 3.29 0.00 0 3 100 2 824.42749 1647.84770 1.65 38.13 2639 2639 MS2 21/28 Linfeng_20120514_rIgG_4.raw High YNILGTNTImDK Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 M10(Oxidation) CID 1.0000 0.0000 1 1 482 3.36 0.00 0 2 100 2 699.85175 1398.69621 2.01 36.12 2714 2714 MS2 18/22 Linfeng_20120514_rIgG_3.raw High NFILDQTNVSAAAQR Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 CID 1.0000 0.0000 1 1 634 3.89 0.00 0 5 100 2 824.42761 1647.84795 1.80 37.96 2934 2934 MS2 22/28 Linfeng_20120514_rIgG_3.raw High NFILDQTNVSAAAQR Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 CID 1.0000 0.0000 1 1 646 4.42 0.00 0 38 100 2 824.42694 1647.84661 0.99 38.23 2625 2625 MS2 21/28 Linfeng_20120515_BRCA1_3.raw High NFILDQTNVSAAAQR Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 CID 1.0000 0.0000 1 1 625 4.56 0.00 0 6 100 2 824.42688 1647.84648 0.91 38.98 3062 3062 MS2 23/28 Linfeng_20120514_rIgG_3.raw IPI00796776.1 "cDNA FLJ54081, highly similar to Keratin, type II cytoskeletal 5" 15.87 1 0 8 101 178.04 15.87 8 63 103.52 9.70 5 38 567 60.1 6.19 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High NMQDLVEDFK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 308 2.03 0.00 0 40 100 2 619.79016 1238.57305 0.66 46.75 4091 4091 MS2 11/18 Linfeng_20120514_rIgG_3.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 630 2.03 0.00 0 3 2 2 665.36591 1329.72453 -1.17 49.04 4475 4475 MS2 11/22 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 436 2.04 0.00 0 32 100 2 632.34998 1263.69267 -1.35 47.14 4939 4939 MS2 16/20 Linfeng_20120515_BRCA1_5.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 780 2.06 0.00 0 53 100 2 602.32391 1203.64055 3.07 36.28 2428 2428 MS2 12/18 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 442 2.08 0.00 0 45 100 2 632.35022 1263.69316 -0.96 46.32 4619 4619 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 458 2.09 0.00 0 39 100 2 632.35022 1263.69316 -0.96 45.94 4524 4524 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 685 2.10 0.00 0 37 100 2 602.32233 1203.63738 0.43 35.52 2738 2738 MS2 11/18 Linfeng_20120514_rIgG_2.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 737 2.12 0.00 0 17 100 2 602.32263 1203.63799 0.94 37.76 2908 2908 MS2 13/18 Linfeng_20120514_rIgG_3.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 609 2.14 0.00 0 44 100 2 572.31793 1143.62859 2.58 35.97 2418 2418 MS2 13/18 Linfeng_20120515_BRCA1_4.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 641 2.16 0.00 0 61 100 2 602.32324 1203.63921 1.95 36.15 2412 2412 MS2 12/18 Linfeng_20120514_rIgG_4.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 783 2.17 0.00 0 51 100 2 602.32373 1203.64018 2.76 36.51 2450 2450 MS2 10/18 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 469 2.18 0.00 0 52 100 2 632.34998 1263.69267 -1.35 47.15 4212 4212 MS2 14/20 Linfeng_20120514_rIgG_9.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 449 2.19 0.00 0 51 100 2 632.34973 1263.69219 -1.74 45.90 4630 4630 MS2 17/20 Linfeng_20120515_BRCA1_5.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 619 2.26 0.00 0 30 100 2 572.31812 1143.62895 2.90 35.86 2381 2381 MS2 15/18 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 477 2.27 0.00 0 41 100 2 632.34985 1263.69243 -1.54 46.04 4549 4549 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 707 2.31 0.00 0 57 100 2 602.32233 1203.63738 0.43 36.78 2457 2457 MS2 12/18 Linfeng_20120514_rIgG_7.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 458 2.32 0.00 0 54 100 2 632.34973 1263.69219 -1.74 46.58 4686 4686 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 2.36 0.00 0 37 100 2 632.35046 1263.69365 -0.58 46.86 3971 3971 MS2 16/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 492 2.37 0.00 0 60 100 2 632.35114 1263.69499 0.48 46.73 4431 4431 MS2 14/20 Linfeng_20120515_BRCA1_10.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 626 2.38 0.00 0 40 100 2 572.31781 1143.62834 2.36 35.70 2609 2609 MS2 14/18 Linfeng_20120514_rIgG_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 470 2.39 0.00 0 30 100 2 632.34888 1263.69048 -3.09 46.46 4770 4770 MS2 17/20 Linfeng_20120515_BRCA1_5.raw High SFSTASAITPSVSR Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 538 2.42 0.00 0 7 100 2 705.86572 1410.72417 1.26 29.75 1920 1920 MS2 14/26 Linfeng_20120514_rIgG_2.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 750 2.43 0.00 0 19 100 2 602.32220 1203.63713 0.23 36.53 2910 2910 MS2 14/18 Linfeng_20120514_rIgG_2.raw High SFSTASAITPSVSR Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 538 2.44 0.00 0 8 100 2 705.86566 1410.72405 1.17 29.56 1807 1807 MS2 16/26 Linfeng_20120514_rIgG_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 473 2.46 0.00 0 46 100 2 632.35022 1263.69316 -0.96 46.78 3951 3951 MS2 17/20 Linfeng_20120514_rIgG_10.raw High TTAENEFVmLK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 M9(Oxidation) CID 1.0000 0.0000 1 1 416 2.48 0.00 0 16 100 2 649.81958 1298.63188 1.65 33.09 2237 2237 MS2 12/20 Linfeng_20120514_rIgG_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 464 2.48 0.00 0 36 100 2 632.35065 1263.69402 -0.29 47.09 3873 3873 MS2 17/20 Linfeng_20120515_BRCA1_7.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 723 2.49 0.00 0 14 100 2 602.32245 1203.63762 0.63 36.59 2611 2611 MS2 15/18 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 472 2.53 0.00 0 15 68 2 632.35034 1263.69341 -0.77 48.85 4961 4961 MS2 18/20 Linfeng_20120514_rIgG_8.raw High VDALmDEINFMK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 M5(Oxidation) CID 1.0000 0.0000 1 1 340 2.53 0.00 0 16 100 2 721.33929 1441.67131 0.73 46.20 4219 4219 MS2 12/22 Linfeng_20120514_rIgG_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 484 2.54 0.00 0 36 100 2 632.35083 1263.69438 0.00 47.21 4177 4177 MS2 15/20 Linfeng_20120514_rIgG_3.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 575 2.57 0.00 0 43 100 2 665.36664 1329.72600 -0.07 49.55 4833 4833 MS2 16/22 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 430 2.59 0.00 0 31 100 2 632.35077 1263.69426 -0.09 47.20 3985 3985 MS2 17/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 449 2.61 0.00 0 37 100 2 632.34973 1263.69219 -1.74 47.17 4828 4828 MS2 16/20 Linfeng_20120515_BRCA1_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 453 2.61 0.00 0 63 100 2 632.35052 1263.69377 -0.48 47.45 4110 4110 MS2 16/20 Linfeng_20120514_rIgG_10.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 514 2.61 0.00 0 4 1 2 665.36542 1329.72356 -1.90 49.02 5023 5023 MS2 14/22 Linfeng_20120515_BRCA1_10.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 719 2.62 0.00 0 38 100 2 572.31714 1143.62700 1.19 35.65 2951 2951 MS2 12/18 Linfeng_20120515_BRCA1_5.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 634 2.63 0.00 0 46 100 2 572.31726 1143.62724 1.40 35.47 2448 2448 MS2 15/18 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 506 2.66 0.00 0 46 100 2 632.35114 1263.69499 0.48 47.52 4063 4063 MS2 17/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 476 2.66 0.00 0 29 79 2 632.35144 1263.69560 0.97 48.87 4958 4958 MS2 18/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 473 2.70 0.00 0 30 100 2 632.35040 1263.69353 -0.67 47.22 4210 4210 MS2 16/20 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 492 2.70 0.00 0 40 100 2 632.35089 1263.69451 0.10 46.88 4113 4113 MS2 14/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 483 2.75 0.00 0 26 100 2 632.35126 1263.69524 0.68 45.46 4168 4168 MS2 18/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 447 2.78 0.00 0 48 100 2 632.35089 1263.69451 0.10 47.36 4023 4023 MS2 16/20 Linfeng_20120515_BRCA1_4.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 622 2.80 0.00 0 39 100 2 572.31750 1143.62773 1.83 35.96 2693 2693 MS2 14/18 Linfeng_20120514_rIgG_3.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 718 2.80 0.00 0 34 100 2 572.31714 1143.62700 1.19 35.61 2637 2637 MS2 15/18 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 463 2.80 0.00 0 31 100 2 632.35107 1263.69487 0.39 46.86 3905 3905 MS2 17/20 Linfeng_20120515_BRCA1_4.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 623 2.85 0.00 0 41 100 2 572.31818 1143.62908 3.00 35.50 2340 2340 MS2 14/18 Linfeng_20120514_rIgG_4.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 596 2.85 0.00 0 28 100 2 572.31812 1143.62895 2.90 35.75 2388 2388 MS2 13/18 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 488 2.87 0.00 0 81 100 2 632.35071 1263.69414 -0.19 46.97 4488 4488 MS2 16/20 Linfeng_20120515_BRCA1_10.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 613 2.87 0.00 0 40 100 2 572.31763 1143.62798 2.04 35.80 2668 2668 MS2 15/18 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 448 2.87 0.00 0 36 100 2 632.35059 1263.69390 -0.38 46.91 4136 4136 MS2 16/20 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 451 2.87 0.00 0 44 100 2 632.35126 1263.69524 0.68 46.57 3752 3752 MS2 16/20 Linfeng_20120515_BRCA1_7.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 470 2.88 0.00 0 38 100 2 632.35089 1263.69451 0.10 47.03 4139 4139 MS2 16/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 459 2.88 0.00 0 53 100 2 632.35059 1263.69390 -0.38 46.42 3866 3866 MS2 17/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 480 2.88 0.00 0 48 100 2 632.35101 1263.69475 0.29 47.36 4243 4243 MS2 17/20 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 462 2.91 0.00 0 45 100 2 632.35052 1263.69377 -0.48 47.07 4019 4019 MS2 16/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 476 2.92 0.00 0 40 100 2 632.35077 1263.69426 -0.09 46.82 3907 3907 MS2 17/20 Linfeng_20120514_rIgG_4.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 603 2.93 0.00 0 47 100 2 572.31830 1143.62932 3.22 35.56 2364 2364 MS2 15/18 Linfeng_20120515_BRCA1_4.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 624 2.93 0.00 0 44 100 2 572.31793 1143.62859 2.58 35.55 2347 2347 MS2 15/18 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 486 2.94 0.00 0 40 100 2 632.35040 1263.69353 -0.67 47.44 4228 4228 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 499 2.95 0.00 0 58 100 2 632.35107 1263.69487 0.39 47.47 4601 4601 MS2 15/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 2.95 0.00 0 15 75 2 632.34955 1263.69182 -2.03 48.84 4404 4404 MS2 18/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 461 2.95 0.00 0 23 100 2 632.35034 1263.69341 -0.77 48.82 4535 4535 MS2 18/20 Linfeng_20120514_rIgG_5.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 459 2.98 0.00 0 37 100 2 632.35046 1263.69365 -0.58 47.08 4177 4177 MS2 18/20 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 492 2.99 0.00 0 57 100 2 632.35083 1263.69438 0.00 47.56 4082 4082 MS2 17/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 477 3.00 0.00 0 41 100 2 632.35059 1263.69390 -0.38 47.37 4037 4037 MS2 18/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 449 3.01 0.00 0 34 100 2 632.35071 1263.69414 -0.19 47.28 4194 4194 MS2 15/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 3.01 0.00 0 25 100 2 632.35138 1263.69548 0.87 46.23 3756 3756 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 639 3.02 0.00 0 35 100 2 572.31842 1143.62956 3.43 35.81 2395 2395 MS2 16/18 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 446 3.03 0.00 0 31 100 2 632.35193 1263.69658 1.74 46.21 4314 4314 MS2 17/20 Linfeng_20120514_rIgG_2.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 635 3.04 0.00 0 22 100 2 602.32306 1203.63884 1.65 36.75 2791 2791 MS2 15/18 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 474 3.04 0.00 0 28 100 2 632.35083 1263.69438 0.00 45.97 3839 3839 MS2 17/20 Linfeng_20120514_rIgG_5.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 413 3.05 0.00 0 28 100 2 632.35193 1263.69658 1.74 45.62 4198 4198 MS2 17/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 441 3.06 0.00 0 27 100 2 632.35101 1263.69475 0.29 45.93 3957 3957 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 518 3.10 0.00 0 20 63 2 632.35016 1263.69304 -1.06 48.84 4399 4399 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 3.11 0.00 0 27 100 2 632.35065 1263.69402 -0.29 45.86 3667 3667 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 711 3.11 0.00 0 33 100 2 572.31714 1143.62700 1.19 35.67 2647 2647 MS2 16/18 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 438 3.13 0.00 0 26 100 2 632.35107 1263.69487 0.39 46.04 3711 3711 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 471 3.15 0.00 0 32 100 2 632.35181 1263.69634 1.55 46.54 4386 4386 MS2 16/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 432 3.16 0.00 0 19 100 2 632.34955 1263.69182 -2.03 48.82 4535 4535 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 419 3.20 0.00 0 33 100 2 632.35156 1263.69585 1.16 46.05 4283 4283 MS2 16/20 Linfeng_20120514_rIgG_2.raw High VDALmDEINFMK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 M5(Oxidation) CID 1.0000 0.0000 1 1 328 3.20 0.00 0 14 100 2 721.33850 1441.66973 -0.37 46.06 3939 3939 MS2 14/22 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 491 3.22 0.00 0 38 100 2 632.35114 1263.69499 0.48 46.67 4076 4076 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 422 3.22 0.00 0 24 100 2 632.35083 1263.69438 0.00 45.90 3141 3141 MS2 17/20 Linfeng_20120515_BRCA1_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 374 3.22 0.00 0 19 100 2 632.35010 1263.69292 -1.16 45.76 3935 3935 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 435 3.24 0.00 0 24 100 2 632.35028 1263.69328 -0.87 45.64 3920 3920 MS2 18/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 457 3.24 0.00 0 33 100 2 632.35156 1263.69585 1.16 46.60 3844 3844 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 634 3.25 0.00 0 32 100 2 572.31757 1143.62786 1.94 36.00 2697 2697 MS2 16/18 Linfeng_20120514_rIgG_3.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 634 3.28 0.00 0 55 100 2 572.31781 1143.62834 2.36 35.41 2562 2562 MS2 15/18 Linfeng_20120514_rIgG_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 446 3.29 0.00 0 30 81 2 632.34961 1263.69194 -1.93 48.82 4861 4861 MS2 18/20 Linfeng_20120514_rIgG_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 494 3.30 0.00 0 53 100 2 632.35089 1263.69451 0.10 47.25 4062 4062 MS2 16/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 472 3.30 0.00 0 26 100 2 632.35095 1263.69463 0.19 45.84 3132 3132 MS2 17/20 Linfeng_20120515_BRCA1_2.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 639 3.31 0.00 0 30 100 2 572.31750 1143.62773 1.83 36.06 2705 2705 MS2 15/18 Linfeng_20120514_rIgG_3.raw High VDALmDEINFmK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 M5(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 295 3.37 0.00 0 6 100 2 729.33704 1457.66680 1.11 37.92 2927 2927 MS2 14/22 Linfeng_20120514_rIgG_3.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 613 3.40 0.00 0 49 100 2 572.31830 1143.62932 3.22 35.28 2316 2316 MS2 14/18 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 422 3.41 0.00 0 25 100 2 632.35077 1263.69426 -0.09 46.13 3994 3994 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 612 3.43 0.00 0 32 100 2 572.31757 1143.62786 1.94 35.77 2663 2663 MS2 16/18 Linfeng_20120514_rIgG_3.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 637 3.46 0.00 0 38 100 2 572.31750 1143.62773 1.83 35.55 2629 2629 MS2 15/18 Linfeng_20120514_rIgG_3.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 622 3.51 0.00 0 50 100 2 572.31757 1143.62786 1.94 35.40 2710 2710 MS2 15/18 Linfeng_20120515_BRCA1_10.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 510 3.72 0.00 0 7 3 2 665.36542 1329.72356 -1.90 49.00 4513 4513 MS2 19/22 Linfeng_20120514_rIgG_10.raw IPI00845339.1 "cDNA FLJ54392, highly similar to Heat shock 70 kDa protein 1" 6.08 1 0 3 8 22.29 6.08 3 8 641 70.0 5.66 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High FEELcSDLFR Unambiguous 5 5 IPI00304925.5;IPI00339269.1;IPI00845339.1;IPI00911039.1;IPI00941328.1 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 246 2.07 0.00 0 17 100 2 658.30420 1315.60112 1.78 46.80 3891 3891 MS2 13/18 Linfeng_20120515_BRCA1_4.raw High FEELcSDLFR Unambiguous 5 5 IPI00304925.5;IPI00339269.1;IPI00845339.1;IPI00911039.1;IPI00941328.1 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 225 2.20 0.00 0 11 100 2 658.30341 1315.59953 0.58 46.71 3870 3870 MS2 12/18 Linfeng_20120515_BRCA1_4.raw High TTPSYVAFTDTER Unambiguous 10 10 IPI00304925.5;IPI00007702.1;IPI00339269.1;IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00845339.1;IPI00910870.1;IPI00911039.1;IPI00941328.1 CID 1.0000 0.0000 1 1 372 2.36 0.00 0 0 100 2 744.35620 1487.70513 2.56 33.88 2120 2120 MS2 16/24 Linfeng_20120515_BRCA1_4.raw High FEELcSDLFR Unambiguous 5 5 IPI00304925.5;IPI00339269.1;IPI00845339.1;IPI00911039.1;IPI00941328.1 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 244 2.69 0.00 0 22 100 2 658.30408 1315.60088 1.60 46.57 3837 3837 MS2 15/18 Linfeng_20120515_BRCA1_4.raw High TTPSYVAFTDTER Unambiguous 10 10 IPI00304925.5;IPI00007702.1;IPI00339269.1;IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00845339.1;IPI00910870.1;IPI00911039.1;IPI00941328.1 CID 1.0000 0.0000 1 1 332 2.70 0.00 0 21 100 2 744.35712 1487.70696 3.79 34.89 2274 2274 MS2 16/24 Linfeng_20120515_BRCA1_4.raw High FEELcSDLFR Unambiguous 5 5 IPI00304925.5;IPI00339269.1;IPI00845339.1;IPI00911039.1;IPI00941328.1 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 207 2.88 0.00 0 16 100 2 658.30365 1315.60002 0.95 46.49 3818 3818 MS2 14/18 Linfeng_20120515_BRCA1_4.raw High IINEPTAAAIAYGLDR Unambiguous 5 5 IPI00304925.5;IPI00339269.1;IPI00845339.1;IPI00911039.1;IPI00941328.1 CID 1.0000 0.0000 1 1 459 3.44 0.00 0 13 100 2 844.45496 1687.90264 0.71 46.89 3912 3912 MS2 18/30 Linfeng_20120515_BRCA1_4.raw High IINEPTAAAIAYGLDR Unambiguous 5 5 IPI00304925.5;IPI00339269.1;IPI00845339.1;IPI00911039.1;IPI00941328.1 CID 1.0000 0.0000 1 1 437 3.95 0.00 0 3 100 2 844.45569 1687.90410 1.58 46.28 3768 3768 MS2 18/30 Linfeng_20120515_BRCA1_4.raw IPI00911039.1 "cDNA FLJ54408, highly similar to Heat shock 70 kDa protein 1" 8.19 1 1 4 10 27.26 8.19 4 10 586 63.9 5.55 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High FEELcSDLFR Unambiguous 5 5 IPI00304925.5;IPI00339269.1;IPI00845339.1;IPI00911039.1;IPI00941328.1 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 246 2.07 0.00 0 17 100 2 658.30420 1315.60112 1.78 46.80 3891 3891 MS2 13/18 Linfeng_20120515_BRCA1_4.raw High FEELcSDLFR Unambiguous 5 5 IPI00304925.5;IPI00339269.1;IPI00845339.1;IPI00911039.1;IPI00941328.1 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 225 2.20 0.00 0 11 100 2 658.30341 1315.59953 0.58 46.71 3870 3870 MS2 12/18 Linfeng_20120515_BRCA1_4.raw High LLQDFFDGR Unambiguous 1 1 IPI00911039.1 CID 1.0000 0.0000 1 1 440 2.31 0.00 0 45 100 2 555.78174 1110.55620 -1.52 47.27 4003 4003 MS2 13/16 Linfeng_20120515_BRCA1_4.raw High TTPSYVAFTDTER Unambiguous 10 10 IPI00304925.5;IPI00007702.1;IPI00339269.1;IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00845339.1;IPI00910870.1;IPI00911039.1;IPI00941328.1 CID 1.0000 0.0000 1 1 372 2.36 0.00 0 0 100 2 744.35620 1487.70513 2.56 33.88 2120 2120 MS2 16/24 Linfeng_20120515_BRCA1_4.raw High LLQDFFDGR Unambiguous 1 1 IPI00911039.1 CID 1.0000 0.0000 1 1 430 2.65 0.00 0 42 100 2 555.78284 1110.55840 0.46 46.92 3920 3920 MS2 13/16 Linfeng_20120515_BRCA1_4.raw High FEELcSDLFR Unambiguous 5 5 IPI00304925.5;IPI00339269.1;IPI00845339.1;IPI00911039.1;IPI00941328.1 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 244 2.69 0.00 0 22 100 2 658.30408 1315.60088 1.60 46.57 3837 3837 MS2 15/18 Linfeng_20120515_BRCA1_4.raw High TTPSYVAFTDTER Unambiguous 10 10 IPI00304925.5;IPI00007702.1;IPI00339269.1;IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00845339.1;IPI00910870.1;IPI00911039.1;IPI00941328.1 CID 1.0000 0.0000 1 1 332 2.70 0.00 0 21 100 2 744.35712 1487.70696 3.79 34.89 2274 2274 MS2 16/24 Linfeng_20120515_BRCA1_4.raw High FEELcSDLFR Unambiguous 5 5 IPI00304925.5;IPI00339269.1;IPI00845339.1;IPI00911039.1;IPI00941328.1 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 207 2.88 0.00 0 16 100 2 658.30365 1315.60002 0.95 46.49 3818 3818 MS2 14/18 Linfeng_20120515_BRCA1_4.raw High IINEPTAAAIAYGLDR Unambiguous 5 5 IPI00304925.5;IPI00339269.1;IPI00845339.1;IPI00911039.1;IPI00941328.1 CID 1.0000 0.0000 1 1 459 3.44 0.00 0 13 100 2 844.45496 1687.90264 0.71 46.89 3912 3912 MS2 18/30 Linfeng_20120515_BRCA1_4.raw High IINEPTAAAIAYGLDR Unambiguous 5 5 IPI00304925.5;IPI00339269.1;IPI00845339.1;IPI00911039.1;IPI00941328.1 CID 1.0000 0.0000 1 1 437 3.95 0.00 0 3 100 2 844.45569 1687.90410 1.58 46.28 3768 3768 MS2 18/30 Linfeng_20120515_BRCA1_4.raw IPI00471928.5 "cDNA FLJ54625, highly similar to ATP synthase subunit alpha, mitochondrial" 22.16 1 0 3 10 28.00 22.16 3 10 167 17.7 5.71 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High AVDSLVPIGR Unambiguous 4 4 IPI00440493.2;IPI00471928.5;IPI00549805.3;IPI00908963.1 CID 1.0000 0.0000 1 1 320 2.21 0.00 0 33 100 2 513.80127 1026.59526 0.96 35.79 2979 2979 MS2 13/18 Linfeng_20120515_BRCA1_5.raw High AVDSLVPIGR Unambiguous 4 4 IPI00440493.2;IPI00471928.5;IPI00549805.3;IPI00908963.1 CID 1.0000 0.0000 1 1 336 2.30 0.00 0 24 100 2 513.80139 1026.59551 1.19 34.78 2760 2760 MS2 13/18 Linfeng_20120515_BRCA1_5.raw High VVDALGNAIDGK Unambiguous 3 3 IPI00440493.2;IPI00471928.5;IPI00549805.3 CID 1.0000 0.0000 1 1 489 2.56 0.00 0 10 100 2 586.32074 1171.63420 2.05 29.94 1861 1861 MS2 13/22 Linfeng_20120515_BRCA1_5.raw High VVDALGNAIDGK Unambiguous 3 3 IPI00440493.2;IPI00471928.5;IPI00549805.3 CID 1.0000 0.0000 1 1 500 2.58 0.00 0 5 100 2 586.32050 1171.63371 1.63 30.22 1890 1890 MS2 15/22 Linfeng_20120515_BRCA1_5.raw High VVDALGNAIDGK Unambiguous 3 3 IPI00440493.2;IPI00471928.5;IPI00549805.3 CID 1.0000 0.0000 1 1 528 2.82 0.00 0 33 100 2 586.32111 1171.63494 2.67 31.17 2017 2017 MS2 16/22 Linfeng_20120515_BRCA1_5.raw High VVDALGNAIDGK Unambiguous 3 3 IPI00440493.2;IPI00471928.5;IPI00549805.3 CID 1.0000 0.0000 1 1 510 2.83 0.00 0 21 100 2 586.32074 1171.63420 2.05 30.34 1905 1905 MS2 18/22 Linfeng_20120515_BRCA1_5.raw High VVDALGNAIDGK Unambiguous 3 3 IPI00440493.2;IPI00471928.5;IPI00549805.3 CID 1.0000 0.0000 1 1 512 2.86 0.00 0 14 100 2 586.32080 1171.63432 2.15 30.30 1900 1900 MS2 17/22 Linfeng_20120515_BRCA1_5.raw High VVDALGNAIDGK Unambiguous 3 3 IPI00440493.2;IPI00471928.5;IPI00549805.3 CID 1.0000 0.0000 1 1 525 3.06 0.00 0 12 100 2 586.32074 1171.63420 2.05 30.26 1894 1894 MS2 18/22 Linfeng_20120515_BRCA1_5.raw High ILGADTSVDLEETGR Unambiguous 4 4 IPI00440493.2;IPI00471928.5;IPI00549805.3;IPI00908963.1 CID 1.0000 0.0000 1 1 545 3.25 0.00 0 5 100 2 788.39850 1575.78972 2.27 35.16 2842 2842 MS2 18/28 Linfeng_20120515_BRCA1_5.raw High VVDALGNAIDGK Unambiguous 3 3 IPI00440493.2;IPI00471928.5;IPI00549805.3 CID 1.0000 0.0000 1 1 492 3.53 0.00 0 42 100 2 586.32092 1171.63457 2.36 30.90 1976 1976 MS2 16/22 Linfeng_20120515_BRCA1_5.raw IPI00956657.1 "cDNA FLJ55189, highly similar to Tubulin beta-4 chain" 7.58 1 0 3 6 14.35 7.58 3 6 409 45.8 4.87 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High ISEQFTAmFR Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 M8(Oxidation) CID 1.0000 0.0000 1 1 376 2.17 0.00 0 54 100 2 623.30212 1245.59697 2.95 36.21 3064 3064 MS2 12/18 Linfeng_20120515_BRCA1_5.raw High ISEQFTAmFR Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 M8(Oxidation) CID 1.0000 0.0000 1 1 380 2.24 0.00 0 55 100 2 623.30157 1245.59587 2.07 36.39 3097 3097 MS2 14/18 Linfeng_20120515_BRCA1_5.raw High YLTVAAVFR Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 CID 1.0000 0.0000 1 1 331 2.27 0.00 0 27 100 2 520.30072 1039.59416 0.61 47.83 5108 5108 MS2 15/16 Linfeng_20120515_BRCA1_5.raw High ImNTFSVVPSPK Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 M2(Oxidation) CID 1.0000 0.0000 1 1 561 2.44 0.00 0 27 100 2 668.35333 1335.69939 1.21 34.89 2785 2785 MS2 11/22 Linfeng_20120515_BRCA1_5.raw High ImNTFSVVPSPK Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 M2(Oxidation) CID 1.0000 0.0000 1 1 575 2.57 0.00 0 31 100 2 668.35370 1335.70012 1.76 34.81 2768 2768 MS2 12/22 Linfeng_20120515_BRCA1_5.raw High ImNTFSVVPSPK Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 M2(Oxidation) CID 1.0000 0.0000 1 1 565 2.67 0.00 0 17 100 2 668.35223 1335.69719 -0.43 34.25 2638 2638 MS2 11/22 Linfeng_20120515_BRCA1_5.raw IPI00797822.2 "cDNA FLJ56579, highly similar to Prohibitin-2" 15.33 1 0 3 5 16.35 15.33 3 5 261 29.0 10.02 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High FNASQLITQR Unambiguous 2 2 IPI00027252.6;IPI00797822.2 CID 1.0000 0.0000 1 1 593 2.19 0.00 0 20 100 2 589.32147 1177.63567 2.74 36.60 2521 2521 MS2 14/18 Linfeng_20120515_BRCA1_7.raw High FNASQLITQR Unambiguous 2 2 IPI00027252.6;IPI00797822.2 CID 1.0000 0.0000 1 1 611 2.43 0.00 0 29 100 2 589.32123 1177.63518 2.33 36.93 2564 2564 MS2 14/18 Linfeng_20120515_BRCA1_7.raw High LLLGAGAVAYGVR Unambiguous 2 2 IPI00027252.6;IPI00797822.2 CID 1.0000 0.0000 1 1 228 3.10 0.00 0 13 100 2 630.37714 1259.74700 -0.08 45.03 3388 3388 MS2 19/24 Linfeng_20120515_BRCA1_7.raw High LLLGAGAVAYGVR Unambiguous 2 2 IPI00027252.6;IPI00797822.2 CID 1.0000 0.0000 1 1 227 3.37 0.00 0 20 100 2 630.37677 1259.74626 -0.67 44.84 3344 3344 MS2 17/24 Linfeng_20120515_BRCA1_7.raw High IGGVQQDTILAEGLHFR Unambiguous 2 2 IPI00027252.6;IPI00797822.2 CID 1.0000 0.0000 1 1 512 5.26 0.00 0 5 31 3 618.66577 1853.98276 -2.24 48.74 4277 4277 MS2 36/64 Linfeng_20120515_BRCA1_7.raw IPI00789536.1 "cDNA FLJ56791, highly similar to Keratin, type I cytoskeletal 16" 29.63 1 0 3 28 74.02 29.63 3 28 0.00 135 15.7 5.40 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 578 2.02 0.00 0 40 100 2 515.30121 1029.59514 1.16 37.05 2747 2747 MS2 11/16 Linfeng_20120514_rIgG_10.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 597 2.03 0.00 0 28 100 2 515.30145 1029.59563 1.64 36.93 2876 2876 MS2 12/16 Linfeng_20120514_rIgG_8.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 512 2.06 0.00 0 5 100 2 651.33282 1301.65837 -0.03 25.69 1470 1470 MS2 11/22 Linfeng_20120514_rIgG_3.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 560 2.06 0.00 0 29 100 2 515.30127 1029.59526 1.28 37.49 2897 2897 MS2 10/16 Linfeng_20120514_rIgG_9.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 591 2.07 0.00 0 35 100 2 515.30133 1029.59538 1.40 37.57 2908 2908 MS2 12/16 Linfeng_20120514_rIgG_9.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 599 2.14 0.00 0 9 100 2 515.30164 1029.59599 1.99 37.07 2514 2514 MS2 10/16 Linfeng_20120514_rIgG_4.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 627 2.15 0.00 0 33 100 2 515.30115 1029.59502 1.05 38.36 3160 3160 MS2 15/16 Linfeng_20120514_rIgG_2.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 512 2.17 0.00 0 4 100 2 651.33337 1301.65947 0.81 27.49 1653 1653 MS2 15/22 Linfeng_20120514_rIgG_2.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 618 2.21 0.00 0 10 100 2 515.30182 1029.59636 2.35 36.82 2803 2803 MS2 14/16 Linfeng_20120514_rIgG_6.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 597 2.22 0.00 0 17 100 2 515.30212 1029.59697 2.94 37.13 2753 2753 MS2 13/16 Linfeng_20120514_rIgG_5.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 614 2.23 0.00 0 7 100 2 515.30170 1029.59612 2.11 37.88 2951 2951 MS2 13/16 Linfeng_20120514_rIgG_6.raw High IIAATIENAQPILQIDNAR Unambiguous 2 2 IPI00217963.3;IPI00789536.1 CID 1.0000 0.0000 1 1 215 2.24 0.00 0 6 100 2 1032.57593 2064.14458 -0.15 48.00 4357 4357 MS2 10/36 Linfeng_20120514_rIgG_3.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 588 2.25 0.00 0 36 100 2 515.30121 1029.59514 1.16 37.01 2742 2742 MS2 12/16 Linfeng_20120514_rIgG_10.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 512 2.26 0.00 0 6 100 2 651.33344 1301.65959 0.91 27.53 1657 1657 MS2 13/22 Linfeng_20120514_rIgG_2.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 538 2.27 0.00 0 4 100 2 651.33398 1301.66069 1.75 27.68 1655 1655 MS2 16/22 Linfeng_20120514_rIgG_3.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 546 2.42 0.00 0 7 100 2 651.33398 1301.66069 1.75 27.72 1661 1661 MS2 16/22 Linfeng_20120514_rIgG_3.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 585 2.43 0.00 0 9 100 2 515.30194 1029.59661 2.59 36.87 2811 2811 MS2 15/16 Linfeng_20120514_rIgG_6.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 547 2.56 0.00 0 6 100 2 651.33234 1301.65740 -0.78 25.32 1452 1452 MS2 15/22 Linfeng_20120514_rIgG_2.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 610 2.64 0.00 0 14 100 2 515.30127 1029.59526 1.28 37.53 3036 3036 MS2 15/16 Linfeng_20120514_rIgG_2.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 563 2.71 0.00 0 37 100 2 515.30139 1029.59551 1.52 37.08 2751 2751 MS2 12/16 Linfeng_20120514_rIgG_10.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 615 2.80 0.00 0 2 100 2 515.30182 1029.59636 2.35 36.94 2812 2812 MS2 15/16 Linfeng_20120514_rIgG_3.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 591 2.85 0.00 0 7 100 2 515.30109 1029.59490 0.93 38.00 2937 2937 MS2 14/16 Linfeng_20120514_rIgG_3.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 613 3.16 0.00 0 4 100 2 515.30206 1029.59685 2.82 37.77 2873 2873 MS2 14/16 Linfeng_20120514_rIgG_1.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 555 3.17 0.00 0 10 100 2 515.30255 1029.59783 3.77 36.74 2743 2743 MS2 15/16 Linfeng_20120514_rIgG_1.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 603 3.44 0.00 0 5 100 2 515.30164 1029.59599 1.99 36.97 2816 2816 MS2 14/16 Linfeng_20120514_rIgG_3.raw High IIAATIENAQPILQIDNAR Unambiguous 2 2 IPI00217963.3;IPI00789536.1 CID 1.0000 0.0000 1 1 179 4.26 0.00 0 0 100 2 1032.57739 2064.14751 1.27 47.69 4575 4575 MS2 19/36 Linfeng_20120514_rIgG_1.raw High IIAATIENAQPILQIDNAR Unambiguous 2 2 IPI00217963.3;IPI00789536.1 CID 1.0000 0.0000 1 1 231 4.51 0.00 0 37 100 3 688.72028 2064.14627 0.67 47.67 4569 4569 MS2 31/72 Linfeng_20120514_rIgG_1.raw High IIAATIENAQPILQIDNAR Unambiguous 2 2 IPI00217963.3;IPI00789536.1 CID 1.0000 0.0000 1 1 183 4.71 0.00 0 0 100 2 1032.57776 2064.14824 1.63 47.63 4561 4561 MS2 17/36 Linfeng_20120514_rIgG_1.raw IPI00909140.7 "cDNA FLJ56903, highly similar to Tubulin beta-7 chain" 6.68 1 0 3 6 14.35 6.68 3 6 464 52.0 4.92 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High ISEQFTAmFR Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 M8(Oxidation) CID 1.0000 0.0000 1 1 376 2.17 0.00 0 54 100 2 623.30212 1245.59697 2.95 36.21 3064 3064 MS2 12/18 Linfeng_20120515_BRCA1_5.raw High ISEQFTAmFR Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 M8(Oxidation) CID 1.0000 0.0000 1 1 380 2.24 0.00 0 55 100 2 623.30157 1245.59587 2.07 36.39 3097 3097 MS2 14/18 Linfeng_20120515_BRCA1_5.raw High YLTVAAVFR Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 CID 1.0000 0.0000 1 1 331 2.27 0.00 0 27 100 2 520.30072 1039.59416 0.61 47.83 5108 5108 MS2 15/16 Linfeng_20120515_BRCA1_5.raw High ImNTFSVVPSPK Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 M2(Oxidation) CID 1.0000 0.0000 1 1 561 2.44 0.00 0 27 100 2 668.35333 1335.69939 1.21 34.89 2785 2785 MS2 11/22 Linfeng_20120515_BRCA1_5.raw High ImNTFSVVPSPK Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 M2(Oxidation) CID 1.0000 0.0000 1 1 575 2.57 0.00 0 31 100 2 668.35370 1335.70012 1.76 34.81 2768 2768 MS2 12/22 Linfeng_20120515_BRCA1_5.raw High ImNTFSVVPSPK Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 M2(Oxidation) CID 1.0000 0.0000 1 1 565 2.67 0.00 0 17 100 2 668.35223 1335.69719 -0.43 34.25 2638 2638 MS2 11/22 Linfeng_20120515_BRCA1_5.raw IPI00910870.1 "cDNA FLJ59163, highly similar to Heat shock cognate 71 kDa protein" 19.52 1 0 3 7 0.00 22.28 19.52 3 7 210 23.1 8.50 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High DAGTIAGLNVLR Unambiguous 4 4 IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00910870.1 CID 1.0000 0.0000 1 1 546 2.22 0.00 0 33 100 2 600.34082 1199.67436 0.03 43.37 3116 3116 MS2 12/22 Linfeng_20120515_BRCA1_4.raw High TTPSYVAFTDTER Unambiguous 10 10 IPI00304925.5;IPI00007702.1;IPI00339269.1;IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00845339.1;IPI00910870.1;IPI00911039.1;IPI00941328.1 CID 1.0000 0.0000 1 1 372 2.36 0.00 0 0 100 2 744.35620 1487.70513 2.56 33.88 2120 2120 MS2 16/24 Linfeng_20120515_BRCA1_4.raw High TTPSYVAFTDTER Unambiguous 10 10 IPI00304925.5;IPI00007702.1;IPI00339269.1;IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00845339.1;IPI00910870.1;IPI00911039.1;IPI00941328.1 CID 1.0000 0.0000 1 1 332 2.70 0.00 0 21 100 2 744.35712 1487.70696 3.79 34.89 2274 2274 MS2 16/24 Linfeng_20120515_BRCA1_4.raw High IINEPTAAAIAYGLDK Unambiguous 5 5 IPI00007702.1;IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00910870.1 CID 1.0000 0.0000 1 1 500 3.34 0.00 0 14 100 2 830.45135 1659.89543 0.09 45.10 3488 3488 MS2 19/30 Linfeng_20120515_BRCA1_4.raw High IINEPTAAAIAYGLDK Unambiguous 5 5 IPI00007702.1;IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00910870.1 CID 1.0000 0.0000 1 1 584 3.73 0.00 0 47 100 3 553.96954 1659.89408 -0.73 45.28 3532 3532 MS2 28/60 Linfeng_20120515_BRCA1_4.raw High IINEPTAAAIAYGLDK Unambiguous 5 5 IPI00007702.1;IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00910870.1 CID 1.0000 0.0000 1 1 515 3.86 0.00 0 10 100 2 830.45166 1659.89604 0.45 45.49 3580 3580 MS2 21/30 Linfeng_20120515_BRCA1_4.raw High IINEPTAAAIAYGLDK Unambiguous 5 5 IPI00007702.1;IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00910870.1 CID 1.0000 0.0000 1 1 443 4.08 0.00 0 8 100 2 830.45184 1659.89641 0.67 45.39 3558 3558 MS2 21/30 Linfeng_20120515_BRCA1_4.raw IPI00910738.1 "cDNA FLJ60647, highly similar to Keratin, type II cytoskeletal 6B" 6.27 1 0 3 73 120.68 6.27 3 43 80.63 6.27 3 30 526 55.7 8.43 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 630 2.03 0.00 0 3 2 2 665.36591 1329.72453 -1.17 49.04 4475 4475 MS2 11/22 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 436 2.04 0.00 0 32 100 2 632.34998 1263.69267 -1.35 47.14 4939 4939 MS2 16/20 Linfeng_20120515_BRCA1_5.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 780 2.06 0.00 0 53 100 2 602.32391 1203.64055 3.07 36.28 2428 2428 MS2 12/18 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 442 2.08 0.00 0 45 100 2 632.35022 1263.69316 -0.96 46.32 4619 4619 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 458 2.09 0.00 0 39 100 2 632.35022 1263.69316 -0.96 45.94 4524 4524 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 685 2.10 0.00 0 37 100 2 602.32233 1203.63738 0.43 35.52 2738 2738 MS2 11/18 Linfeng_20120514_rIgG_2.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 737 2.12 0.00 0 17 100 2 602.32263 1203.63799 0.94 37.76 2908 2908 MS2 13/18 Linfeng_20120514_rIgG_3.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 641 2.16 0.00 0 61 100 2 602.32324 1203.63921 1.95 36.15 2412 2412 MS2 12/18 Linfeng_20120514_rIgG_4.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 783 2.17 0.00 0 51 100 2 602.32373 1203.64018 2.76 36.51 2450 2450 MS2 10/18 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 469 2.18 0.00 0 52 100 2 632.34998 1263.69267 -1.35 47.15 4212 4212 MS2 14/20 Linfeng_20120514_rIgG_9.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 449 2.19 0.00 0 51 100 2 632.34973 1263.69219 -1.74 45.90 4630 4630 MS2 17/20 Linfeng_20120515_BRCA1_5.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 477 2.27 0.00 0 41 100 2 632.34985 1263.69243 -1.54 46.04 4549 4549 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 707 2.31 0.00 0 57 100 2 602.32233 1203.63738 0.43 36.78 2457 2457 MS2 12/18 Linfeng_20120514_rIgG_7.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 458 2.32 0.00 0 54 100 2 632.34973 1263.69219 -1.74 46.58 4686 4686 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 2.36 0.00 0 37 100 2 632.35046 1263.69365 -0.58 46.86 3971 3971 MS2 16/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 492 2.37 0.00 0 60 100 2 632.35114 1263.69499 0.48 46.73 4431 4431 MS2 14/20 Linfeng_20120515_BRCA1_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 470 2.39 0.00 0 30 100 2 632.34888 1263.69048 -3.09 46.46 4770 4770 MS2 17/20 Linfeng_20120515_BRCA1_5.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 750 2.43 0.00 0 19 100 2 602.32220 1203.63713 0.23 36.53 2910 2910 MS2 14/18 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 473 2.46 0.00 0 46 100 2 632.35022 1263.69316 -0.96 46.78 3951 3951 MS2 17/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 464 2.48 0.00 0 36 100 2 632.35065 1263.69402 -0.29 47.09 3873 3873 MS2 17/20 Linfeng_20120515_BRCA1_7.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 723 2.49 0.00 0 14 100 2 602.32245 1203.63762 0.63 36.59 2611 2611 MS2 15/18 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 472 2.53 0.00 0 15 68 2 632.35034 1263.69341 -0.77 48.85 4961 4961 MS2 18/20 Linfeng_20120514_rIgG_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 484 2.54 0.00 0 36 100 2 632.35083 1263.69438 0.00 47.21 4177 4177 MS2 15/20 Linfeng_20120514_rIgG_3.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 575 2.57 0.00 0 43 100 2 665.36664 1329.72600 -0.07 49.55 4833 4833 MS2 16/22 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 430 2.59 0.00 0 31 100 2 632.35077 1263.69426 -0.09 47.20 3985 3985 MS2 17/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 449 2.61 0.00 0 37 100 2 632.34973 1263.69219 -1.74 47.17 4828 4828 MS2 16/20 Linfeng_20120515_BRCA1_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 453 2.61 0.00 0 63 100 2 632.35052 1263.69377 -0.48 47.45 4110 4110 MS2 16/20 Linfeng_20120514_rIgG_10.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 514 2.61 0.00 0 4 1 2 665.36542 1329.72356 -1.90 49.02 5023 5023 MS2 14/22 Linfeng_20120515_BRCA1_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 506 2.66 0.00 0 46 100 2 632.35114 1263.69499 0.48 47.52 4063 4063 MS2 17/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 476 2.66 0.00 0 29 79 2 632.35144 1263.69560 0.97 48.87 4958 4958 MS2 18/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 473 2.70 0.00 0 30 100 2 632.35040 1263.69353 -0.67 47.22 4210 4210 MS2 16/20 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 492 2.70 0.00 0 40 100 2 632.35089 1263.69451 0.10 46.88 4113 4113 MS2 14/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 483 2.75 0.00 0 26 100 2 632.35126 1263.69524 0.68 45.46 4168 4168 MS2 18/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 447 2.78 0.00 0 48 100 2 632.35089 1263.69451 0.10 47.36 4023 4023 MS2 16/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 463 2.80 0.00 0 31 100 2 632.35107 1263.69487 0.39 46.86 3905 3905 MS2 17/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 488 2.87 0.00 0 81 100 2 632.35071 1263.69414 -0.19 46.97 4488 4488 MS2 16/20 Linfeng_20120515_BRCA1_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 448 2.87 0.00 0 36 100 2 632.35059 1263.69390 -0.38 46.91 4136 4136 MS2 16/20 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 451 2.87 0.00 0 44 100 2 632.35126 1263.69524 0.68 46.57 3752 3752 MS2 16/20 Linfeng_20120515_BRCA1_7.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 470 2.88 0.00 0 38 100 2 632.35089 1263.69451 0.10 47.03 4139 4139 MS2 16/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 459 2.88 0.00 0 53 100 2 632.35059 1263.69390 -0.38 46.42 3866 3866 MS2 17/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 480 2.88 0.00 0 48 100 2 632.35101 1263.69475 0.29 47.36 4243 4243 MS2 17/20 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 462 2.91 0.00 0 45 100 2 632.35052 1263.69377 -0.48 47.07 4019 4019 MS2 16/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 476 2.92 0.00 0 40 100 2 632.35077 1263.69426 -0.09 46.82 3907 3907 MS2 17/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 486 2.94 0.00 0 40 100 2 632.35040 1263.69353 -0.67 47.44 4228 4228 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 499 2.95 0.00 0 58 100 2 632.35107 1263.69487 0.39 47.47 4601 4601 MS2 15/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 2.95 0.00 0 15 75 2 632.34955 1263.69182 -2.03 48.84 4404 4404 MS2 18/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 461 2.95 0.00 0 23 100 2 632.35034 1263.69341 -0.77 48.82 4535 4535 MS2 18/20 Linfeng_20120514_rIgG_5.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 459 2.98 0.00 0 37 100 2 632.35046 1263.69365 -0.58 47.08 4177 4177 MS2 18/20 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 492 2.99 0.00 0 57 100 2 632.35083 1263.69438 0.00 47.56 4082 4082 MS2 17/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 477 3.00 0.00 0 41 100 2 632.35059 1263.69390 -0.38 47.37 4037 4037 MS2 18/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 449 3.01 0.00 0 34 100 2 632.35071 1263.69414 -0.19 47.28 4194 4194 MS2 15/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 3.01 0.00 0 25 100 2 632.35138 1263.69548 0.87 46.23 3756 3756 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 446 3.03 0.00 0 31 100 2 632.35193 1263.69658 1.74 46.21 4314 4314 MS2 17/20 Linfeng_20120514_rIgG_2.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 635 3.04 0.00 0 22 100 2 602.32306 1203.63884 1.65 36.75 2791 2791 MS2 15/18 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 474 3.04 0.00 0 28 100 2 632.35083 1263.69438 0.00 45.97 3839 3839 MS2 17/20 Linfeng_20120514_rIgG_5.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 413 3.05 0.00 0 28 100 2 632.35193 1263.69658 1.74 45.62 4198 4198 MS2 17/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 441 3.06 0.00 0 27 100 2 632.35101 1263.69475 0.29 45.93 3957 3957 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 518 3.10 0.00 0 20 63 2 632.35016 1263.69304 -1.06 48.84 4399 4399 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 3.11 0.00 0 27 100 2 632.35065 1263.69402 -0.29 45.86 3667 3667 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 438 3.13 0.00 0 26 100 2 632.35107 1263.69487 0.39 46.04 3711 3711 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 471 3.15 0.00 0 32 100 2 632.35181 1263.69634 1.55 46.54 4386 4386 MS2 16/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 432 3.16 0.00 0 19 100 2 632.34955 1263.69182 -2.03 48.82 4535 4535 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 419 3.20 0.00 0 33 100 2 632.35156 1263.69585 1.16 46.05 4283 4283 MS2 16/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 491 3.22 0.00 0 38 100 2 632.35114 1263.69499 0.48 46.67 4076 4076 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 422 3.22 0.00 0 24 100 2 632.35083 1263.69438 0.00 45.90 3141 3141 MS2 17/20 Linfeng_20120515_BRCA1_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 374 3.22 0.00 0 19 100 2 632.35010 1263.69292 -1.16 45.76 3935 3935 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 435 3.24 0.00 0 24 100 2 632.35028 1263.69328 -0.87 45.64 3920 3920 MS2 18/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 457 3.24 0.00 0 33 100 2 632.35156 1263.69585 1.16 46.60 3844 3844 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 446 3.29 0.00 0 30 81 2 632.34961 1263.69194 -1.93 48.82 4861 4861 MS2 18/20 Linfeng_20120514_rIgG_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 494 3.30 0.00 0 53 100 2 632.35089 1263.69451 0.10 47.25 4062 4062 MS2 16/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 472 3.30 0.00 0 26 100 2 632.35095 1263.69463 0.19 45.84 3132 3132 MS2 17/20 Linfeng_20120515_BRCA1_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 422 3.41 0.00 0 25 100 2 632.35077 1263.69426 -0.09 46.13 3994 3994 MS2 17/20 Linfeng_20120514_rIgG_3.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 510 3.72 0.00 0 7 3 2 665.36542 1329.72356 -1.90 49.00 4513 4513 MS2 19/22 Linfeng_20120514_rIgG_10.raw IPI00930073.1 "cDNA, FLJ93744, highly similar to Homo sapiens keratin 6E (KRT6E), mRNA" 10.82 1 0 5 79 127.71 10.82 5 46 87.42 8.87 4 33 564 60.0 7.72 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High TAAENEFVTLK Unambiguous 9 9 IPI00942512.1;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00290857.2;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 489 2.00 0.00 0 43 100 2 611.82062 1222.63396 2.05 32.62 2207 2207 MS2 11/20 Linfeng_20120514_rIgG_3.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 630 2.03 0.00 0 3 2 2 665.36591 1329.72453 -1.17 49.04 4475 4475 MS2 11/22 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 436 2.04 0.00 0 32 100 2 632.34998 1263.69267 -1.35 47.14 4939 4939 MS2 16/20 Linfeng_20120515_BRCA1_5.raw High AIGGGLSSVGGGSSTIK Unambiguous 6 6 IPI00300725.7;IPI00299145.9;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 603 2.04 0.00 0 7 100 2 724.39258 1447.77788 1.86 28.30 1585 1585 MS2 14/32 Linfeng_20120515_BRCA1_7.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 780 2.06 0.00 0 53 100 2 602.32391 1203.64055 3.07 36.28 2428 2428 MS2 12/18 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 442 2.08 0.00 0 45 100 2 632.35022 1263.69316 -0.96 46.32 4619 4619 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 458 2.09 0.00 0 39 100 2 632.35022 1263.69316 -0.96 45.94 4524 4524 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 685 2.10 0.00 0 37 100 2 602.32233 1203.63738 0.43 35.52 2738 2738 MS2 11/18 Linfeng_20120514_rIgG_2.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 737 2.12 0.00 0 17 100 2 602.32263 1203.63799 0.94 37.76 2908 2908 MS2 13/18 Linfeng_20120514_rIgG_3.raw High TAAENEFVTLK Unambiguous 9 9 IPI00942512.1;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00290857.2;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 505 2.12 0.00 0 47 100 2 611.82056 1222.63384 1.95 32.68 2216 2216 MS2 11/20 Linfeng_20120514_rIgG_3.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 641 2.16 0.00 0 61 100 2 602.32324 1203.63921 1.95 36.15 2412 2412 MS2 12/18 Linfeng_20120514_rIgG_4.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 783 2.17 0.00 0 51 100 2 602.32373 1203.64018 2.76 36.51 2450 2450 MS2 10/18 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 469 2.18 0.00 0 52 100 2 632.34998 1263.69267 -1.35 47.15 4212 4212 MS2 14/20 Linfeng_20120514_rIgG_9.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 449 2.19 0.00 0 51 100 2 632.34973 1263.69219 -1.74 45.90 4630 4630 MS2 17/20 Linfeng_20120515_BRCA1_5.raw High AIGGGLSSVGGGSSTIK Unambiguous 6 6 IPI00300725.7;IPI00299145.9;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 555 2.24 0.00 0 4 100 2 724.39148 1447.77568 0.35 28.63 1644 1644 MS2 18/32 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 477 2.27 0.00 0 41 100 2 632.34985 1263.69243 -1.54 46.04 4549 4549 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 707 2.31 0.00 0 57 100 2 602.32233 1203.63738 0.43 36.78 2457 2457 MS2 12/18 Linfeng_20120514_rIgG_7.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 458 2.32 0.00 0 54 100 2 632.34973 1263.69219 -1.74 46.58 4686 4686 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 2.36 0.00 0 37 100 2 632.35046 1263.69365 -0.58 46.86 3971 3971 MS2 16/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 492 2.37 0.00 0 60 100 2 632.35114 1263.69499 0.48 46.73 4431 4431 MS2 14/20 Linfeng_20120515_BRCA1_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 470 2.39 0.00 0 30 100 2 632.34888 1263.69048 -3.09 46.46 4770 4770 MS2 17/20 Linfeng_20120515_BRCA1_5.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 750 2.43 0.00 0 19 100 2 602.32220 1203.63713 0.23 36.53 2910 2910 MS2 14/18 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 473 2.46 0.00 0 46 100 2 632.35022 1263.69316 -0.96 46.78 3951 3951 MS2 17/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 464 2.48 0.00 0 36 100 2 632.35065 1263.69402 -0.29 47.09 3873 3873 MS2 17/20 Linfeng_20120515_BRCA1_7.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 723 2.49 0.00 0 14 100 2 602.32245 1203.63762 0.63 36.59 2611 2611 MS2 15/18 Linfeng_20120515_BRCA1_1.raw High AIGGGLSSVGGGSSTIK Unambiguous 6 6 IPI00300725.7;IPI00299145.9;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 527 2.50 0.00 0 0 100 2 724.39105 1447.77483 -0.24 29.31 1676 1676 MS2 16/32 Linfeng_20120515_BRCA1_7.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 472 2.53 0.00 0 15 68 2 632.35034 1263.69341 -0.77 48.85 4961 4961 MS2 18/20 Linfeng_20120514_rIgG_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 484 2.54 0.00 0 36 100 2 632.35083 1263.69438 0.00 47.21 4177 4177 MS2 15/20 Linfeng_20120514_rIgG_3.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 575 2.57 0.00 0 43 100 2 665.36664 1329.72600 -0.07 49.55 4833 4833 MS2 16/22 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 430 2.59 0.00 0 31 100 2 632.35077 1263.69426 -0.09 47.20 3985 3985 MS2 17/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 449 2.61 0.00 0 37 100 2 632.34973 1263.69219 -1.74 47.17 4828 4828 MS2 16/20 Linfeng_20120515_BRCA1_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 453 2.61 0.00 0 63 100 2 632.35052 1263.69377 -0.48 47.45 4110 4110 MS2 16/20 Linfeng_20120514_rIgG_10.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 514 2.61 0.00 0 4 1 2 665.36542 1329.72356 -1.90 49.02 5023 5023 MS2 14/22 Linfeng_20120515_BRCA1_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 506 2.66 0.00 0 46 100 2 632.35114 1263.69499 0.48 47.52 4063 4063 MS2 17/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 476 2.66 0.00 0 29 79 2 632.35144 1263.69560 0.97 48.87 4958 4958 MS2 18/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 473 2.70 0.00 0 30 100 2 632.35040 1263.69353 -0.67 47.22 4210 4210 MS2 16/20 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 492 2.70 0.00 0 40 100 2 632.35089 1263.69451 0.10 46.88 4113 4113 MS2 14/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 483 2.75 0.00 0 26 100 2 632.35126 1263.69524 0.68 45.46 4168 4168 MS2 18/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 447 2.78 0.00 0 48 100 2 632.35089 1263.69451 0.10 47.36 4023 4023 MS2 16/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 463 2.80 0.00 0 31 100 2 632.35107 1263.69487 0.39 46.86 3905 3905 MS2 17/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 488 2.87 0.00 0 81 100 2 632.35071 1263.69414 -0.19 46.97 4488 4488 MS2 16/20 Linfeng_20120515_BRCA1_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 448 2.87 0.00 0 36 100 2 632.35059 1263.69390 -0.38 46.91 4136 4136 MS2 16/20 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 451 2.87 0.00 0 44 100 2 632.35126 1263.69524 0.68 46.57 3752 3752 MS2 16/20 Linfeng_20120515_BRCA1_7.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 470 2.88 0.00 0 38 100 2 632.35089 1263.69451 0.10 47.03 4139 4139 MS2 16/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 459 2.88 0.00 0 53 100 2 632.35059 1263.69390 -0.38 46.42 3866 3866 MS2 17/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 480 2.88 0.00 0 48 100 2 632.35101 1263.69475 0.29 47.36 4243 4243 MS2 17/20 Linfeng_20120515_BRCA1_1.raw High AIGGGLSSVGGGSSTIK Unambiguous 6 6 IPI00300725.7;IPI00299145.9;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 557 2.91 0.00 0 24 100 2 724.39392 1447.78057 3.72 28.47 1754 1754 MS2 19/32 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 462 2.91 0.00 0 45 100 2 632.35052 1263.69377 -0.48 47.07 4019 4019 MS2 16/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 476 2.92 0.00 0 40 100 2 632.35077 1263.69426 -0.09 46.82 3907 3907 MS2 17/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 486 2.94 0.00 0 40 100 2 632.35040 1263.69353 -0.67 47.44 4228 4228 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 499 2.95 0.00 0 58 100 2 632.35107 1263.69487 0.39 47.47 4601 4601 MS2 15/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 2.95 0.00 0 15 75 2 632.34955 1263.69182 -2.03 48.84 4404 4404 MS2 18/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 461 2.95 0.00 0 23 100 2 632.35034 1263.69341 -0.77 48.82 4535 4535 MS2 18/20 Linfeng_20120514_rIgG_5.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 459 2.98 0.00 0 37 100 2 632.35046 1263.69365 -0.58 47.08 4177 4177 MS2 18/20 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 492 2.99 0.00 0 57 100 2 632.35083 1263.69438 0.00 47.56 4082 4082 MS2 17/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 477 3.00 0.00 0 41 100 2 632.35059 1263.69390 -0.38 47.37 4037 4037 MS2 18/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 449 3.01 0.00 0 34 100 2 632.35071 1263.69414 -0.19 47.28 4194 4194 MS2 15/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 3.01 0.00 0 25 100 2 632.35138 1263.69548 0.87 46.23 3756 3756 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 446 3.03 0.00 0 31 100 2 632.35193 1263.69658 1.74 46.21 4314 4314 MS2 17/20 Linfeng_20120514_rIgG_2.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 635 3.04 0.00 0 22 100 2 602.32306 1203.63884 1.65 36.75 2791 2791 MS2 15/18 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 474 3.04 0.00 0 28 100 2 632.35083 1263.69438 0.00 45.97 3839 3839 MS2 17/20 Linfeng_20120514_rIgG_5.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 413 3.05 0.00 0 28 100 2 632.35193 1263.69658 1.74 45.62 4198 4198 MS2 17/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 441 3.06 0.00 0 27 100 2 632.35101 1263.69475 0.29 45.93 3957 3957 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 518 3.10 0.00 0 20 63 2 632.35016 1263.69304 -1.06 48.84 4399 4399 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 3.11 0.00 0 27 100 2 632.35065 1263.69402 -0.29 45.86 3667 3667 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 438 3.13 0.00 0 26 100 2 632.35107 1263.69487 0.39 46.04 3711 3711 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 471 3.15 0.00 0 32 100 2 632.35181 1263.69634 1.55 46.54 4386 4386 MS2 16/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 432 3.16 0.00 0 19 100 2 632.34955 1263.69182 -2.03 48.82 4535 4535 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 419 3.20 0.00 0 33 100 2 632.35156 1263.69585 1.16 46.05 4283 4283 MS2 16/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 491 3.22 0.00 0 38 100 2 632.35114 1263.69499 0.48 46.67 4076 4076 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 422 3.22 0.00 0 24 100 2 632.35083 1263.69438 0.00 45.90 3141 3141 MS2 17/20 Linfeng_20120515_BRCA1_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 374 3.22 0.00 0 19 100 2 632.35010 1263.69292 -1.16 45.76 3935 3935 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 435 3.24 0.00 0 24 100 2 632.35028 1263.69328 -0.87 45.64 3920 3920 MS2 18/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 457 3.24 0.00 0 33 100 2 632.35156 1263.69585 1.16 46.60 3844 3844 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 446 3.29 0.00 0 30 81 2 632.34961 1263.69194 -1.93 48.82 4861 4861 MS2 18/20 Linfeng_20120514_rIgG_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 494 3.30 0.00 0 53 100 2 632.35089 1263.69451 0.10 47.25 4062 4062 MS2 16/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 472 3.30 0.00 0 26 100 2 632.35095 1263.69463 0.19 45.84 3132 3132 MS2 17/20 Linfeng_20120515_BRCA1_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 422 3.41 0.00 0 25 100 2 632.35077 1263.69426 -0.09 46.13 3994 3994 MS2 17/20 Linfeng_20120514_rIgG_3.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 510 3.72 0.00 0 7 3 2 665.36542 1329.72356 -1.90 49.00 4513 4513 MS2 19/22 Linfeng_20120514_rIgG_10.raw IPI00969616.1 Desmoplakin Ia 4.04 1 0 6 10 26.76 4.04 6 10 0.00 2428 278.7 6.95 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High ALLQAILQTEDMLK Unambiguous 3 3 IPI00013933.2;IPI00217182.5;IPI00969616.1 CID 1.0000 0.0000 1 1 381 2.08 0.00 0 42 100 2 793.94580 1586.88432 1.28 55.44 5785 5785 MS2 13/26 Linfeng_20120514_rIgG_2.raw High AELIVQPELK Unambiguous 3 3 IPI00013933.2;IPI00217182.5;IPI00969616.1 CID 1.0000 0.0000 1 1 182 2.21 0.00 0 20 100 2 570.33801 1139.66875 1.44 36.04 2703 2703 MS2 11/18 Linfeng_20120514_rIgG_3.raw Medium TmIQSPSGVILQEAADVHAR Unambiguous 3 3 IPI00013933.2;IPI00217182.5;IPI00969616.1 M2(Oxidation) CID 1.0000 0.0000 1 1 606 2.36 0.00 0 32 100 3 713.70203 2139.09153 2.40 44.68 3859 3859 MS2 20/76 Linfeng_20120514_rIgG_1.raw High IEVLEEELR Unambiguous 3 3 IPI00013933.2;IPI00217182.5;IPI00969616.1 CID 1.0000 0.0000 1 1 679 2.50 0.00 0 54 100 2 565.30975 1129.61223 1.98 38.81 3225 3225 MS2 12/16 Linfeng_20120514_rIgG_2.raw Medium IGLVRPGTALELLEAQAATGFIVDPVSNLR Unambiguous 3 3 IPI00013933.2;IPI00217182.5;IPI00969616.1 CID 1.0000 0.0000 1 1 43 2.58 0.00 1 41 100 4 780.94519 3120.75893 5.51 55.47 5192 5192 MS2 35/174 Linfeng_20120514_rIgG_3.raw High ALLQAILQTEDMLK Unambiguous 3 3 IPI00013933.2;IPI00217182.5;IPI00969616.1 CID 1.0000 0.0000 1 1 386 2.67 0.00 0 53 100 2 793.94623 1586.88518 1.82 55.41 5179 5179 MS2 16/26 Linfeng_20120514_rIgG_3.raw High LLEAQIATGGIIDPK Unambiguous 3 3 IPI00013933.2;IPI00217182.5;IPI00969616.1 CID 1.0000 0.0000 1 1 246 2.69 0.00 0 16 100 2 769.94330 1538.87932 0.26 43.31 3505 3505 MS2 14/28 Linfeng_20120514_rIgG_3.raw High AELIVQPELK Unambiguous 3 3 IPI00013933.2;IPI00217182.5;IPI00969616.1 CID 1.0000 0.0000 1 1 186 2.85 0.00 0 31 100 2 570.33838 1139.66948 2.08 36.12 2716 2716 MS2 12/18 Linfeng_20120514_rIgG_3.raw High ALLQAILQTEDMLK Unambiguous 3 3 IPI00013933.2;IPI00217182.5;IPI00969616.1 CID 1.0000 0.0000 1 1 405 3.30 0.00 0 23 100 2 793.94666 1586.88603 2.36 55.41 5778 5778 MS2 16/26 Linfeng_20120514_rIgG_2.raw High LLEAQIATGGIIDPK Unambiguous 3 3 IPI00013933.2;IPI00217182.5;IPI00969616.1 CID 1.0000 0.0000 1 1 210 3.54 0.00 0 18 100 2 769.94452 1538.88176 1.85 43.32 3786 3786 MS2 17/28 Linfeng_20120514_rIgG_2.raw IPI00025874.2 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 precursor 7.12 1 0 3 6 17.64 7.12 3 6 646 72.7 6.28 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High ALTSEIALLQSR Unambiguous 2 2 IPI00025874.2;IPI00793589.2 CID 1.0000 0.0000 1 1 431 2.32 0.00 0 63 100 2 651.37469 1301.74211 -0.22 45.87 3670 3670 MS2 13/22 Linfeng_20120515_BRCA1_4.raw Medium APDELHYTYLDTFGRPVIVAYK Unambiguous 2 2 IPI00025874.2;IPI00793589.2 CID 1.0000 0.0000 1 1 568 2.66 0.00 1 9 52 4 642.83356 2568.31240 -0.38 48.67 4342 4342 MS2 34/126 Linfeng_20120515_BRCA1_4.raw High NIEIDSPYEISR Unambiguous 2 2 IPI00025874.2;IPI00793589.2 CID 1.0000 0.0000 1 1 542 2.84 0.00 0 10 100 2 718.35834 1435.70940 2.09 37.66 2655 2655 MS2 17/22 Linfeng_20120515_BRCA1_4.raw High ALTSEIALLQSR Unambiguous 2 2 IPI00025874.2;IPI00793589.2 CID 1.0000 0.0000 1 1 434 3.05 0.00 0 29 100 2 651.37469 1301.74211 -0.22 45.67 3624 3624 MS2 17/22 Linfeng_20120515_BRCA1_4.raw High ALTSEIALLQSR Unambiguous 2 2 IPI00025874.2;IPI00793589.2 CID 1.0000 0.0000 1 1 432 3.37 0.00 0 4 100 2 651.37518 1301.74309 0.53 45.24 3521 3521 MS2 18/22 Linfeng_20120515_BRCA1_4.raw High ALTSEIALLQSR Unambiguous 2 2 IPI00025874.2;IPI00793589.2 CID 1.0000 0.0000 1 1 430 3.40 0.00 0 14 100 2 651.37494 1301.74260 0.15 45.50 3582 3582 MS2 18/22 Linfeng_20120515_BRCA1_4.raw IPI00304925.5 Heat shock 70 kDa protein 1A/1B 6.08 1 0 3 8 22.29 6.08 3 8 641 70.0 5.66 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High FEELcSDLFR Unambiguous 5 5 IPI00304925.5;IPI00339269.1;IPI00845339.1;IPI00911039.1;IPI00941328.1 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 246 2.07 0.00 0 17 100 2 658.30420 1315.60112 1.78 46.80 3891 3891 MS2 13/18 Linfeng_20120515_BRCA1_4.raw High FEELcSDLFR Unambiguous 5 5 IPI00304925.5;IPI00339269.1;IPI00845339.1;IPI00911039.1;IPI00941328.1 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 225 2.20 0.00 0 11 100 2 658.30341 1315.59953 0.58 46.71 3870 3870 MS2 12/18 Linfeng_20120515_BRCA1_4.raw High TTPSYVAFTDTER Unambiguous 10 10 IPI00304925.5;IPI00007702.1;IPI00339269.1;IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00845339.1;IPI00910870.1;IPI00911039.1;IPI00941328.1 CID 1.0000 0.0000 1 1 372 2.36 0.00 0 0 100 2 744.35620 1487.70513 2.56 33.88 2120 2120 MS2 16/24 Linfeng_20120515_BRCA1_4.raw High FEELcSDLFR Unambiguous 5 5 IPI00304925.5;IPI00339269.1;IPI00845339.1;IPI00911039.1;IPI00941328.1 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 244 2.69 0.00 0 22 100 2 658.30408 1315.60088 1.60 46.57 3837 3837 MS2 15/18 Linfeng_20120515_BRCA1_4.raw High TTPSYVAFTDTER Unambiguous 10 10 IPI00304925.5;IPI00007702.1;IPI00339269.1;IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00845339.1;IPI00910870.1;IPI00911039.1;IPI00941328.1 CID 1.0000 0.0000 1 1 332 2.70 0.00 0 21 100 2 744.35712 1487.70696 3.79 34.89 2274 2274 MS2 16/24 Linfeng_20120515_BRCA1_4.raw High FEELcSDLFR Unambiguous 5 5 IPI00304925.5;IPI00339269.1;IPI00845339.1;IPI00911039.1;IPI00941328.1 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 207 2.88 0.00 0 16 100 2 658.30365 1315.60002 0.95 46.49 3818 3818 MS2 14/18 Linfeng_20120515_BRCA1_4.raw High IINEPTAAAIAYGLDR Unambiguous 5 5 IPI00304925.5;IPI00339269.1;IPI00845339.1;IPI00911039.1;IPI00941328.1 CID 1.0000 0.0000 1 1 459 3.44 0.00 0 13 100 2 844.45496 1687.90264 0.71 46.89 3912 3912 MS2 18/30 Linfeng_20120515_BRCA1_4.raw High IINEPTAAAIAYGLDR Unambiguous 5 5 IPI00304925.5;IPI00339269.1;IPI00845339.1;IPI00911039.1;IPI00941328.1 CID 1.0000 0.0000 1 1 437 3.95 0.00 0 3 100 2 844.45569 1687.90410 1.58 46.28 3768 3768 MS2 18/30 Linfeng_20120515_BRCA1_4.raw IPI00339269.1 Heat shock 70 kDa protein 6 6.07 1 0 3 8 22.29 6.07 3 8 643 71.0 6.14 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High FEELcSDLFR Unambiguous 5 5 IPI00304925.5;IPI00339269.1;IPI00845339.1;IPI00911039.1;IPI00941328.1 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 246 2.07 0.00 0 17 100 2 658.30420 1315.60112 1.78 46.80 3891 3891 MS2 13/18 Linfeng_20120515_BRCA1_4.raw High FEELcSDLFR Unambiguous 5 5 IPI00304925.5;IPI00339269.1;IPI00845339.1;IPI00911039.1;IPI00941328.1 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 225 2.20 0.00 0 11 100 2 658.30341 1315.59953 0.58 46.71 3870 3870 MS2 12/18 Linfeng_20120515_BRCA1_4.raw High TTPSYVAFTDTER Unambiguous 10 10 IPI00304925.5;IPI00007702.1;IPI00339269.1;IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00845339.1;IPI00910870.1;IPI00911039.1;IPI00941328.1 CID 1.0000 0.0000 1 1 372 2.36 0.00 0 0 100 2 744.35620 1487.70513 2.56 33.88 2120 2120 MS2 16/24 Linfeng_20120515_BRCA1_4.raw High FEELcSDLFR Unambiguous 5 5 IPI00304925.5;IPI00339269.1;IPI00845339.1;IPI00911039.1;IPI00941328.1 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 244 2.69 0.00 0 22 100 2 658.30408 1315.60088 1.60 46.57 3837 3837 MS2 15/18 Linfeng_20120515_BRCA1_4.raw High TTPSYVAFTDTER Unambiguous 10 10 IPI00304925.5;IPI00007702.1;IPI00339269.1;IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00845339.1;IPI00910870.1;IPI00911039.1;IPI00941328.1 CID 1.0000 0.0000 1 1 332 2.70 0.00 0 21 100 2 744.35712 1487.70696 3.79 34.89 2274 2274 MS2 16/24 Linfeng_20120515_BRCA1_4.raw High FEELcSDLFR Unambiguous 5 5 IPI00304925.5;IPI00339269.1;IPI00845339.1;IPI00911039.1;IPI00941328.1 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 207 2.88 0.00 0 16 100 2 658.30365 1315.60002 0.95 46.49 3818 3818 MS2 14/18 Linfeng_20120515_BRCA1_4.raw High IINEPTAAAIAYGLDR Unambiguous 5 5 IPI00304925.5;IPI00339269.1;IPI00845339.1;IPI00911039.1;IPI00941328.1 CID 1.0000 0.0000 1 1 459 3.44 0.00 0 13 100 2 844.45496 1687.90264 0.71 46.89 3912 3912 MS2 18/30 Linfeng_20120515_BRCA1_4.raw High IINEPTAAAIAYGLDR Unambiguous 5 5 IPI00304925.5;IPI00339269.1;IPI00845339.1;IPI00911039.1;IPI00941328.1 CID 1.0000 0.0000 1 1 437 3.95 0.00 0 3 100 2 844.45569 1687.90410 1.58 46.28 3768 3768 MS2 18/30 Linfeng_20120515_BRCA1_4.raw IPI00007702.1 Heat shock-related 70 kDa protein 2 6.42 1 0 4 9 28.13 6.42 4 9 639 70.0 5.74 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High TTPSYVAFTDTER Unambiguous 10 10 IPI00304925.5;IPI00007702.1;IPI00339269.1;IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00845339.1;IPI00910870.1;IPI00911039.1;IPI00941328.1 CID 1.0000 0.0000 1 1 372 2.36 0.00 0 0 100 2 744.35620 1487.70513 2.56 33.88 2120 2120 MS2 16/24 Linfeng_20120515_BRCA1_4.raw High FEELNADLFR Unambiguous 4 4 IPI00007702.1;IPI00003865.1;IPI00939595.1;IPI00037070.3 CID 1.0000 0.0000 1 1 478 2.61 0.00 0 17 100 2 627.31256 1253.61785 1.36 46.79 3890 3890 MS2 13/18 Linfeng_20120515_BRCA1_4.raw High ARFEELNADLFR Unambiguous 4 4 IPI00007702.1;IPI00003865.1;IPI00939595.1;IPI00037070.3 CID 1.0000 0.0000 1 1 565 2.68 0.00 1 18 100 3 494.25662 1480.75531 0.63 48.01 4179 4179 MS2 20/44 Linfeng_20120515_BRCA1_4.raw High TTPSYVAFTDTER Unambiguous 10 10 IPI00304925.5;IPI00007702.1;IPI00339269.1;IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00845339.1;IPI00910870.1;IPI00911039.1;IPI00941328.1 CID 1.0000 0.0000 1 1 332 2.70 0.00 0 21 100 2 744.35712 1487.70696 3.79 34.89 2274 2274 MS2 16/24 Linfeng_20120515_BRCA1_4.raw High ARFEELNADLFR Unambiguous 4 4 IPI00007702.1;IPI00003865.1;IPI00939595.1;IPI00037070.3 CID 1.0000 0.0000 1 1 574 2.77 0.00 1 2 100 3 494.25644 1480.75476 0.26 48.46 4289 4289 MS2 20/44 Linfeng_20120515_BRCA1_4.raw High IINEPTAAAIAYGLDK Unambiguous 5 5 IPI00007702.1;IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00910870.1 CID 1.0000 0.0000 1 1 500 3.34 0.00 0 14 100 2 830.45135 1659.89543 0.09 45.10 3488 3488 MS2 19/30 Linfeng_20120515_BRCA1_4.raw High IINEPTAAAIAYGLDK Unambiguous 5 5 IPI00007702.1;IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00910870.1 CID 1.0000 0.0000 1 1 584 3.73 0.00 0 47 100 3 553.96954 1659.89408 -0.73 45.28 3532 3532 MS2 28/60 Linfeng_20120515_BRCA1_4.raw High IINEPTAAAIAYGLDK Unambiguous 5 5 IPI00007702.1;IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00910870.1 CID 1.0000 0.0000 1 1 515 3.86 0.00 0 10 100 2 830.45166 1659.89604 0.45 45.49 3580 3580 MS2 21/30 Linfeng_20120515_BRCA1_4.raw High IINEPTAAAIAYGLDK Unambiguous 5 5 IPI00007702.1;IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00910870.1 CID 1.0000 0.0000 1 1 443 4.08 0.00 0 8 100 2 830.45184 1659.89641 0.67 45.39 3558 3558 MS2 21/30 Linfeng_20120515_BRCA1_4.raw IPI00217465.5 Histone H1.2 14.55 1 3 3 4 0.00 10.10 14.55 3 4 213 21.4 10.93 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High SGVSLAALK Unambiguous 1 1 IPI00217465.5 CID 1.0000 0.0000 1 1 472 2.01 0.00 0 8 100 2 423.25873 845.51018 1.23 30.94 1794 1794 MS2 14/16 Linfeng_20120515_BRCA1_7.raw High KASGPPVSELITK Unambiguous 1 1 IPI00217465.5 CID 1.0000 0.0000 1 1 317 2.55 0.00 1 1 100 2 663.88531 1326.76335 0.41 30.02 1724 1724 MS2 13/24 Linfeng_20120515_BRCA1_7.raw High KPAAATVTK Unambiguous 1 1 IPI00217465.5 CID 1.0000 0.0000 1 1 391 2.64 0.00 1 10 100 2 443.77155 886.53581 0.14 12.41 677 677 MS2 12/16 Linfeng_20120515_BRCA1_7.raw High KASGPPVSELITK Unambiguous 1 1 IPI00217465.5 CID 1.0000 0.0000 1 1 327 2.90 0.00 1 1 100 2 663.88519 1326.76311 0.22 29.01 1651 1651 MS2 17/24 Linfeng_20120515_BRCA1_7.raw IPI00216457.7 Histone H2A type 2-A 43.85 1 0 3 29 50.81 43.85 3 15 42.49 43.85 3 14 130 14.1 10.90 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High AGLQFPVGR Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 788 2.02 0.00 0 35 100 2 472.77048 944.53368 2.54 34.23 2522 2522 MS2 11/16 Linfeng_20120515_BRCA1_10.raw High AGLQFPVGR Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 796 2.05 0.00 0 12 100 2 472.77017 944.53307 1.89 36.18 2534 2534 MS2 11/16 Linfeng_20120515_BRCA1_9.raw High AGLQFPVGR Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 863 2.06 0.00 0 37 100 2 472.77002 944.53276 1.57 35.98 2370 2370 MS2 12/16 Linfeng_20120514_rIgG_7.raw High AGLQFPVGR Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 772 2.08 0.00 0 48 100 2 472.77008 944.53288 1.70 36.81 2799 2799 MS2 8/16 Linfeng_20120514_rIgG_9.raw High AGLQFPVGR Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 878 2.14 0.00 0 23 100 2 472.77100 944.53472 3.64 34.28 2532 2532 MS2 12/16 Linfeng_20120515_BRCA1_10.raw High AGLQFPVGR Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 823 2.15 0.00 0 4 30 2 472.77020 944.53313 1.96 36.22 2653 2653 MS2 13/16 Linfeng_20120514_rIgG_10.raw High AGLQFPVGR Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 877 2.25 0.00 0 30 100 2 472.77054 944.53380 2.67 35.99 3020 3020 MS2 10/16 Linfeng_20120515_BRCA1_8.raw High AGLQFPVGR Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 807 2.32 0.00 0 4 23 2 472.77048 944.53368 2.54 35.29 2686 2686 MS2 12/16 Linfeng_20120515_BRCA1_10.raw Medium VTIAQGGVLPNIQAVLLPK Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 19 2.46 0.00 0 29 100 3 644.39496 1931.17032 0.73 49.39 4632 4632 MS2 27/72 Linfeng_20120514_rIgG_10.raw High AGLQFPVGR Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 824 2.47 0.00 0 47 100 2 472.76990 944.53252 1.31 36.71 2785 2785 MS2 10/16 Linfeng_20120514_rIgG_9.raw High AGLQFPVGR Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 893 2.48 0.00 0 6 100 2 472.77042 944.53356 2.41 35.70 2629 2629 MS2 14/16 Linfeng_20120514_rIgG_9.raw High AGLQFPVGR Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 881 2.58 0.00 0 5 25 2 472.77029 944.53331 2.15 36.30 2879 2879 MS2 13/16 Linfeng_20120515_BRCA1_10.raw High AGLQFPVGR Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 854 2.59 0.00 0 14 100 2 472.77029 944.53331 2.15 37.31 3056 3056 MS2 14/16 Linfeng_20120515_BRCA1_10.raw High AGLQFPVGR Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 873 2.84 0.00 0 4 24 2 472.77075 944.53423 3.12 35.21 2525 2525 MS2 15/16 Linfeng_20120514_rIgG_10.raw High VTIAQGGVLPNIQAVLLPK Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 21 2.94 0.00 0 18 100 3 644.39471 1931.16959 0.35 49.23 4593 4593 MS2 21/72 Linfeng_20120514_rIgG_10.raw High VTIAQGGVLPNIQAVLLPK Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 21 2.99 0.00 0 5 100 3 644.39484 1931.16996 0.54 49.30 5114 5114 MS2 20/72 Linfeng_20120515_BRCA1_10.raw High VTIAQGGVLPNIQAVLLPK Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 22 3.38 0.00 0 24 100 3 644.39368 1931.16648 -1.26 49.61 5188 5188 MS2 26/72 Linfeng_20120515_BRCA1_10.raw High VTIAQGGVLPNIQAVLLPK Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 18 3.44 0.00 0 8 100 2 966.08844 1931.16960 0.36 49.19 5086 5086 MS2 19/36 Linfeng_20120515_BRCA1_10.raw High VTIAQGGVLPNIQAVLLPK Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 18 3.62 0.00 0 15 100 3 644.39502 1931.17051 0.83 49.23 5096 5096 MS2 29/72 Linfeng_20120515_BRCA1_10.raw High VGAGAPVYmAAVLEYLTAEILELAGNAAR Unambiguous 2 2 IPI00216457.7;IPI00339274.5 M9(Oxidation) CID 1.0000 0.0000 1 1 338 3.77 0.00 0 19 100 3 983.85486 2949.55002 3.68 55.82 5422 5422 MS2 27/112 Linfeng_20120514_rIgG_10.raw High VGAGAPVYmAAVLEYLTAEILELAGNAAR Unambiguous 2 2 IPI00216457.7;IPI00339274.5 M9(Oxidation) CID 1.0000 0.0000 1 1 369 3.88 0.00 0 0 100 3 983.85077 2949.53775 -0.48 54.59 5196 5196 MS2 31/112 Linfeng_20120514_rIgG_10.raw High VTIAQGGVLPNIQAVLLPK Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 16 4.01 0.00 0 0 100 2 966.08649 1931.16570 -1.66 49.83 4738 4738 MS2 22/36 Linfeng_20120514_rIgG_10.raw High VTIAQGGVLPNIQAVLLPK Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 15 4.07 0.00 0 3 0 2 966.08710 1931.16692 -1.03 49.04 5033 5033 MS2 21/36 Linfeng_20120515_BRCA1_10.raw High VTIAQGGVLPNIQAVLLPK Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 15 4.30 0.00 0 0 100 2 966.08704 1931.16680 -1.10 49.68 5198 5198 MS2 21/36 Linfeng_20120515_BRCA1_10.raw High VTIAQGGVLPNIQAVLLPK Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 15 4.35 0.00 0 0 100 2 966.08801 1931.16875 -0.08 49.19 4583 4583 MS2 23/36 Linfeng_20120514_rIgG_10.raw High VGAGAPVYmAAVLEYLTAEILELAGNAAR Unambiguous 2 2 IPI00216457.7;IPI00339274.5 M9(Oxidation) CID 1.0000 0.0000 1 1 451 4.74 0.00 0 0 75 3 983.84650 2949.52494 -4.83 54.63 5664 5664 MS2 35/112 Linfeng_20120515_BRCA1_10.raw High VGAGAPVYmAAVLEYLTAEILELAGNAAR Unambiguous 2 2 IPI00216457.7;IPI00339274.5 M9(Oxidation) CID 1.0000 0.0000 1 1 306 4.79 0.00 0 0 100 2 1475.27124 2949.53520 -1.35 55.36 5300 5300 MS2 22/56 Linfeng_20120514_rIgG_10.raw High VGAGAPVYmAAVLEYLTAEILELAGNAAR Unambiguous 2 2 IPI00216457.7;IPI00339274.5 M9(Oxidation) CID 1.0000 0.0000 1 1 347 4.83 0.00 0 2 22 3 983.85413 2949.54782 2.93 55.40 5312 5312 MS2 35/112 Linfeng_20120514_rIgG_10.raw High VGAGAPVYmAAVLEYLTAEILELAGNAAR Unambiguous 2 2 IPI00216457.7;IPI00339274.5 M9(Oxidation) CID 1.0000 0.0000 1 1 411 5.69 0.00 0 14 48 3 983.84814 2949.52988 -3.15 54.83 5225 5225 MS2 42/112 Linfeng_20120514_rIgG_10.raw IPI00339274.5 Histone H2A type 2-C 44.19 1 0 3 29 50.81 44.19 3 15 42.49 44.19 3 14 129 14.0 10.90 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High AGLQFPVGR Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 788 2.02 0.00 0 35 100 2 472.77048 944.53368 2.54 34.23 2522 2522 MS2 11/16 Linfeng_20120515_BRCA1_10.raw High AGLQFPVGR Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 796 2.05 0.00 0 12 100 2 472.77017 944.53307 1.89 36.18 2534 2534 MS2 11/16 Linfeng_20120515_BRCA1_9.raw High AGLQFPVGR Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 863 2.06 0.00 0 37 100 2 472.77002 944.53276 1.57 35.98 2370 2370 MS2 12/16 Linfeng_20120514_rIgG_7.raw High AGLQFPVGR Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 772 2.08 0.00 0 48 100 2 472.77008 944.53288 1.70 36.81 2799 2799 MS2 8/16 Linfeng_20120514_rIgG_9.raw High AGLQFPVGR Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 878 2.14 0.00 0 23 100 2 472.77100 944.53472 3.64 34.28 2532 2532 MS2 12/16 Linfeng_20120515_BRCA1_10.raw High AGLQFPVGR Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 823 2.15 0.00 0 4 30 2 472.77020 944.53313 1.96 36.22 2653 2653 MS2 13/16 Linfeng_20120514_rIgG_10.raw High AGLQFPVGR Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 877 2.25 0.00 0 30 100 2 472.77054 944.53380 2.67 35.99 3020 3020 MS2 10/16 Linfeng_20120515_BRCA1_8.raw High AGLQFPVGR Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 807 2.32 0.00 0 4 23 2 472.77048 944.53368 2.54 35.29 2686 2686 MS2 12/16 Linfeng_20120515_BRCA1_10.raw Medium VTIAQGGVLPNIQAVLLPK Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 19 2.46 0.00 0 29 100 3 644.39496 1931.17032 0.73 49.39 4632 4632 MS2 27/72 Linfeng_20120514_rIgG_10.raw High AGLQFPVGR Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 824 2.47 0.00 0 47 100 2 472.76990 944.53252 1.31 36.71 2785 2785 MS2 10/16 Linfeng_20120514_rIgG_9.raw High AGLQFPVGR Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 893 2.48 0.00 0 6 100 2 472.77042 944.53356 2.41 35.70 2629 2629 MS2 14/16 Linfeng_20120514_rIgG_9.raw High AGLQFPVGR Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 881 2.58 0.00 0 5 25 2 472.77029 944.53331 2.15 36.30 2879 2879 MS2 13/16 Linfeng_20120515_BRCA1_10.raw High AGLQFPVGR Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 854 2.59 0.00 0 14 100 2 472.77029 944.53331 2.15 37.31 3056 3056 MS2 14/16 Linfeng_20120515_BRCA1_10.raw High AGLQFPVGR Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 873 2.84 0.00 0 4 24 2 472.77075 944.53423 3.12 35.21 2525 2525 MS2 15/16 Linfeng_20120514_rIgG_10.raw High VTIAQGGVLPNIQAVLLPK Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 21 2.94 0.00 0 18 100 3 644.39471 1931.16959 0.35 49.23 4593 4593 MS2 21/72 Linfeng_20120514_rIgG_10.raw High VTIAQGGVLPNIQAVLLPK Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 21 2.99 0.00 0 5 100 3 644.39484 1931.16996 0.54 49.30 5114 5114 MS2 20/72 Linfeng_20120515_BRCA1_10.raw High VTIAQGGVLPNIQAVLLPK Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 22 3.38 0.00 0 24 100 3 644.39368 1931.16648 -1.26 49.61 5188 5188 MS2 26/72 Linfeng_20120515_BRCA1_10.raw High VTIAQGGVLPNIQAVLLPK Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 18 3.44 0.00 0 8 100 2 966.08844 1931.16960 0.36 49.19 5086 5086 MS2 19/36 Linfeng_20120515_BRCA1_10.raw High VTIAQGGVLPNIQAVLLPK Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 18 3.62 0.00 0 15 100 3 644.39502 1931.17051 0.83 49.23 5096 5096 MS2 29/72 Linfeng_20120515_BRCA1_10.raw High VGAGAPVYmAAVLEYLTAEILELAGNAAR Unambiguous 2 2 IPI00216457.7;IPI00339274.5 M9(Oxidation) CID 1.0000 0.0000 1 1 338 3.77 0.00 0 19 100 3 983.85486 2949.55002 3.68 55.82 5422 5422 MS2 27/112 Linfeng_20120514_rIgG_10.raw High VGAGAPVYmAAVLEYLTAEILELAGNAAR Unambiguous 2 2 IPI00216457.7;IPI00339274.5 M9(Oxidation) CID 1.0000 0.0000 1 1 369 3.88 0.00 0 0 100 3 983.85077 2949.53775 -0.48 54.59 5196 5196 MS2 31/112 Linfeng_20120514_rIgG_10.raw High VTIAQGGVLPNIQAVLLPK Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 16 4.01 0.00 0 0 100 2 966.08649 1931.16570 -1.66 49.83 4738 4738 MS2 22/36 Linfeng_20120514_rIgG_10.raw High VTIAQGGVLPNIQAVLLPK Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 15 4.07 0.00 0 3 0 2 966.08710 1931.16692 -1.03 49.04 5033 5033 MS2 21/36 Linfeng_20120515_BRCA1_10.raw High VTIAQGGVLPNIQAVLLPK Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 15 4.30 0.00 0 0 100 2 966.08704 1931.16680 -1.10 49.68 5198 5198 MS2 21/36 Linfeng_20120515_BRCA1_10.raw High VTIAQGGVLPNIQAVLLPK Unambiguous 2 2 IPI00216457.7;IPI00339274.5 CID 1.0000 0.0000 1 1 15 4.35 0.00 0 0 100 2 966.08801 1931.16875 -0.08 49.19 4583 4583 MS2 23/36 Linfeng_20120514_rIgG_10.raw High VGAGAPVYmAAVLEYLTAEILELAGNAAR Unambiguous 2 2 IPI00216457.7;IPI00339274.5 M9(Oxidation) CID 1.0000 0.0000 1 1 451 4.74 0.00 0 0 75 3 983.84650 2949.52494 -4.83 54.63 5664 5664 MS2 35/112 Linfeng_20120515_BRCA1_10.raw High VGAGAPVYmAAVLEYLTAEILELAGNAAR Unambiguous 2 2 IPI00216457.7;IPI00339274.5 M9(Oxidation) CID 1.0000 0.0000 1 1 306 4.79 0.00 0 0 100 2 1475.27124 2949.53520 -1.35 55.36 5300 5300 MS2 22/56 Linfeng_20120514_rIgG_10.raw High VGAGAPVYmAAVLEYLTAEILELAGNAAR Unambiguous 2 2 IPI00216457.7;IPI00339274.5 M9(Oxidation) CID 1.0000 0.0000 1 1 347 4.83 0.00 0 2 22 3 983.85413 2949.54782 2.93 55.40 5312 5312 MS2 35/112 Linfeng_20120514_rIgG_10.raw High VGAGAPVYmAAVLEYLTAEILELAGNAAR Unambiguous 2 2 IPI00216457.7;IPI00339274.5 M9(Oxidation) CID 1.0000 0.0000 1 1 411 5.69 0.00 0 14 48 3 983.84814 2949.52988 -3.15 54.83 5225 5225 MS2 42/112 Linfeng_20120514_rIgG_10.raw IPI00453473.6 Histone H4 42.72 1 6 6 54 62.44 41.75 5 21 96.45 42.72 6 33 103 11.4 11.36 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High TVTAmDVVYALK Unambiguous 1 1 IPI00453473.6 M5(Oxidation) CID 1.0000 0.0000 1 1 442 2.03 0.00 0 25 100 2 663.85315 1326.69902 1.20 45.80 4206 4206 MS2 12/22 Linfeng_20120515_BRCA1_10.raw High TVTAmDVVYALK Unambiguous 1 1 IPI00453473.6 M5(Oxidation) CID 1.0000 0.0000 1 1 426 2.04 0.00 0 6 100 2 663.85242 1326.69756 0.10 44.27 3436 3436 MS2 12/22 Linfeng_20120514_rIgG_10.raw High TVTAMDVVYALK Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 521 2.08 0.00 0 23 6 2 655.85394 1310.70061 -1.45 48.97 5007 5007 MS2 11/22 Linfeng_20120515_BRCA1_10.raw High TVTAMDVVYALK Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 420 2.12 0.00 0 38 100 2 655.85535 1310.70342 0.69 49.32 5119 5119 MS2 12/22 Linfeng_20120515_BRCA1_10.raw High VFLENVIR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 335 2.18 0.00 0 23 100 2 495.29257 989.57787 -0.02 47.92 4219 4219 MS2 11/14 Linfeng_20120514_rIgG_10.raw High DNIQGITKPAIR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 291 2.27 0.00 1 2 100 2 663.37933 1325.75139 -1.70 24.38 1374 1374 MS2 12/22 Linfeng_20120514_rIgG_10.raw High RISGLIYEETR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 401 2.28 0.00 1 24 100 2 668.86713 1336.72698 3.73 37.60 3097 3097 MS2 12/20 Linfeng_20120515_BRCA1_10.raw High RISGLIYEETR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 403 2.33 0.00 1 15 100 2 668.86646 1336.72563 2.72 37.09 3022 3022 MS2 12/20 Linfeng_20120515_BRCA1_10.raw High ISGLIYEETR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 514 2.36 0.00 0 22 100 2 590.81531 1180.62334 2.09 35.13 2663 2663 MS2 13/18 Linfeng_20120515_BRCA1_10.raw High KTVTAmDVVYALK Unambiguous 1 1 IPI00453473.6 M6(Oxidation) CID 1.0000 0.0000 1 1 457 2.37 0.00 1 20 100 2 727.90002 1454.79277 0.26 40.15 3019 3019 MS2 16/24 Linfeng_20120514_rIgG_10.raw High TVTAmDVVYALK Unambiguous 1 1 IPI00453473.6 M5(Oxidation) CID 1.0000 0.0000 1 1 462 2.46 0.00 0 14 100 2 663.85242 1326.69756 0.10 45.28 4082 4082 MS2 14/22 Linfeng_20120515_BRCA1_10.raw High KTVTAmDVVYALK Unambiguous 1 1 IPI00453473.6 M6(Oxidation) CID 1.0000 0.0000 1 1 461 2.54 0.00 1 6 100 2 727.89960 1454.79192 -0.33 39.39 3335 3335 MS2 14/24 Linfeng_20120515_BRCA1_10.raw High ISGLIYEETR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 509 2.54 0.00 0 25 100 2 590.81573 1180.62419 2.81 35.57 2573 2573 MS2 12/18 Linfeng_20120514_rIgG_10.raw High TVTAmDVVYALK Unambiguous 1 1 IPI00453473.6 M5(Oxidation) CID 1.0000 0.0000 1 1 448 2.59 0.00 0 45 100 2 663.85260 1326.69792 0.37 45.70 4183 4183 MS2 13/22 Linfeng_20120515_BRCA1_10.raw High ISGLIYEETR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 502 2.59 0.00 0 19 100 2 590.81555 1180.62383 2.50 34.78 2611 2611 MS2 14/18 Linfeng_20120515_BRCA1_10.raw High ISGLIYEETR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 487 2.62 0.00 0 27 100 2 590.81537 1180.62346 2.19 35.21 2673 2673 MS2 14/18 Linfeng_20120515_BRCA1_10.raw High VFLENVIR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 320 2.63 0.00 0 5 34 2 495.29285 989.57842 0.53 44.47 3469 3469 MS2 12/14 Linfeng_20120514_rIgG_10.raw High DNIQGITKPAIR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 292 2.64 0.00 1 1 100 2 663.37909 1325.75090 -2.07 24.56 1372 1372 MS2 14/22 Linfeng_20120515_BRCA1_10.raw High VFLENVIR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 359 2.68 0.00 0 13 100 2 495.29218 989.57707 -0.83 47.38 4586 4586 MS2 13/14 Linfeng_20120515_BRCA1_10.raw High VFLENVIR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 321 2.74 0.00 0 3 29 2 495.29257 989.57787 -0.02 45.49 4131 4131 MS2 12/14 Linfeng_20120515_BRCA1_10.raw High TVTAmDVVYALK Unambiguous 1 1 IPI00453473.6 M5(Oxidation) CID 1.0000 0.0000 1 1 430 2.77 0.00 0 2 67 2 663.85260 1326.69792 0.37 43.38 3674 3674 MS2 18/22 Linfeng_20120515_BRCA1_10.raw High ISGLIYEETR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 558 2.80 0.00 0 46 100 2 590.81445 1180.62163 0.64 31.08 1936 1936 MS2 14/18 Linfeng_20120514_rIgG_10.raw High VFLENVIR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 328 2.80 0.00 0 9 100 2 495.29276 989.57823 0.35 47.74 4674 4674 MS2 13/14 Linfeng_20120515_BRCA1_10.raw High ISGLIYEETR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 523 2.81 0.00 0 17 100 2 590.81555 1180.62383 2.50 34.69 2597 2597 MS2 15/18 Linfeng_20120515_BRCA1_10.raw High VFLENVIR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 353 2.86 0.00 0 4 8 2 495.29190 989.57652 -1.38 44.47 3889 3889 MS2 12/14 Linfeng_20120515_BRCA1_10.raw High VFLENVIR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 321 2.90 0.00 0 3 57 2 495.29272 989.57817 0.28 45.51 3661 3661 MS2 13/14 Linfeng_20120514_rIgG_10.raw High ISGLIYEETR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 488 2.91 0.00 0 46 100 2 590.81537 1180.62346 2.19 31.08 1999 1999 MS2 14/18 Linfeng_20120515_BRCA1_10.raw High VFLENVIR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 330 2.95 0.00 0 12 100 2 495.29272 989.57817 0.28 46.54 3896 3896 MS2 13/14 Linfeng_20120514_rIgG_10.raw High ISGLIYEETR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 469 2.96 0.00 0 12 100 2 590.81549 1180.62370 2.40 34.54 2435 2435 MS2 14/18 Linfeng_20120514_rIgG_10.raw High ISGLIYEETR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 505 2.97 0.00 0 28 100 2 590.81543 1180.62358 2.30 35.38 2706 2706 MS2 12/18 Linfeng_20120515_BRCA1_10.raw High VFLENVIR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 343 3.07 0.00 0 27 100 2 495.29312 989.57897 1.09 46.54 4384 4384 MS2 13/14 Linfeng_20120515_BRCA1_10.raw High TVTAmDVVYALK Unambiguous 1 1 IPI00453473.6 M5(Oxidation) CID 1.0000 0.0000 1 1 424 3.07 0.00 0 4 75 2 663.85248 1326.69768 0.19 43.26 3291 3291 MS2 19/22 Linfeng_20120514_rIgG_10.raw High ISGLIYEETR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 508 3.09 0.00 0 3 56 2 590.81573 1180.62419 2.81 33.11 2203 2203 MS2 17/18 Linfeng_20120514_rIgG_10.raw High ISGLIYEETR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 518 3.10 0.00 0 16 100 2 590.81598 1180.62468 3.23 34.39 2549 2549 MS2 15/18 Linfeng_20120515_BRCA1_10.raw High ISGLIYEETR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 470 3.11 0.00 0 12 100 2 590.81543 1180.62358 2.30 34.33 2407 2407 MS2 16/18 Linfeng_20120514_rIgG_10.raw High ISGLIYEETR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 507 3.17 0.00 0 18 100 2 590.81506 1180.62285 1.68 34.86 2622 2622 MS2 15/18 Linfeng_20120515_BRCA1_10.raw High ISGLIYEETR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 522 3.18 0.00 0 12 100 2 590.81610 1180.62493 3.43 34.63 2447 2447 MS2 15/18 Linfeng_20120514_rIgG_10.raw High TVTAmDVVYALK Unambiguous 1 1 IPI00453473.6 M5(Oxidation) CID 1.0000 0.0000 1 1 432 3.19 0.00 0 1 100 2 663.85248 1326.69768 0.19 44.42 3878 3878 MS2 18/22 Linfeng_20120515_BRCA1_10.raw High ISGLIYEETR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 456 3.20 0.00 0 11 100 2 590.81561 1180.62395 2.61 34.49 2426 2426 MS2 15/18 Linfeng_20120514_rIgG_10.raw High ISGLIYEETR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 510 3.28 0.00 0 15 100 2 590.81549 1180.62370 2.40 34.54 2575 2575 MS2 17/18 Linfeng_20120515_BRCA1_10.raw High ISGLIYEETR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 481 3.44 0.00 0 9 100 2 590.81543 1180.62358 2.30 33.81 2316 2316 MS2 16/18 Linfeng_20120514_rIgG_10.raw High ISGLIYEETR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 504 3.47 0.00 0 4 53 2 590.81525 1180.62322 1.99 32.10 2054 2054 MS2 17/18 Linfeng_20120514_rIgG_10.raw High ISGLIYEETR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 556 3.49 0.00 0 9 100 2 590.81592 1180.62456 3.12 34.05 2356 2356 MS2 16/18 Linfeng_20120514_rIgG_10.raw High ISGLIYEETR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 558 3.52 0.00 0 6 100 2 590.81592 1180.62456 3.12 33.73 2303 2303 MS2 17/18 Linfeng_20120514_rIgG_10.raw High ISGLIYEETR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 510 3.53 0.00 0 4 81 2 590.81567 1180.62407 2.71 33.29 2231 2231 MS2 17/18 Linfeng_20120514_rIgG_10.raw High ISGLIYEETR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 527 3.54 0.00 0 3 46 2 590.81616 1180.62505 3.54 33.01 2300 2300 MS2 16/18 Linfeng_20120515_BRCA1_10.raw High ISGLIYEETR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 554 3.54 0.00 0 4 34 2 590.81653 1180.62578 4.16 32.11 2145 2145 MS2 17/18 Linfeng_20120515_BRCA1_10.raw High ISGLIYEETR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 538 3.63 0.00 0 16 100 2 590.81610 1180.62493 3.43 34.13 2500 2500 MS2 16/18 Linfeng_20120515_BRCA1_10.raw High KTVTAMDVVYALK Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 406 3.64 0.00 1 17 94 3 480.27032 1438.79642 -0.74 48.68 4906 4906 MS2 26/48 Linfeng_20120515_BRCA1_10.raw High ISGLIYEETR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 525 3.65 0.00 0 2 66 2 590.81616 1180.62505 3.54 33.19 2330 2330 MS2 16/18 Linfeng_20120515_BRCA1_10.raw High ISGLIYEETR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 474 3.69 0.00 0 9 100 2 590.81561 1180.62395 2.61 33.90 2331 2331 MS2 15/18 Linfeng_20120514_rIgG_10.raw High ISGLIYEETR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 488 3.78 0.00 0 3 100 2 590.81555 1180.62383 2.50 33.42 2370 2370 MS2 16/18 Linfeng_20120515_BRCA1_10.raw High ISGLIYEETR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 555 3.83 0.00 0 4 59 2 590.81653 1180.62578 4.16 33.15 2324 2324 MS2 17/18 Linfeng_20120515_BRCA1_10.raw High ISGLIYEETR Unambiguous 1 1 IPI00453473.6 CID 1.0000 0.0000 1 1 515 3.85 0.00 0 13 100 2 590.81561 1180.62395 2.61 33.98 2473 2473 MS2 17/18 Linfeng_20120515_BRCA1_10.raw IPI00644079.3 HNRPU protein 7.48 1 0 4 15 29.18 7.48 4 10 14.98 6.23 3 5 722 79.7 7.87 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High SSGPTSLFAVTVAPPGAR Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 CID 1.0000 0.0000 1 1 511 2.20 0.00 0 14 100 2 857.96124 1714.91521 1.67 47.07 3964 3964 MS2 15/34 Linfeng_20120514_rIgG_4.raw High mcLFAGFQR Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 M1(Oxidation); C2(Carbamidomethyl) CID 1.0000 0.0000 1 1 179 2.20 0.00 0 3 100 2 573.26532 1145.52336 0.22 42.25 3391 3391 MS2 9/16 Linfeng_20120514_rIgG_3.raw High YNILGTNTImDK Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 M10(Oxidation) CID 1.0000 0.0000 1 1 490 2.22 0.00 0 13 100 2 699.85278 1398.69829 3.50 35.29 2318 2318 MS2 16/22 Linfeng_20120514_rIgG_4.raw High YNILGTNTImDK Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 M10(Oxidation) CID 1.0000 0.0000 1 1 507 2.30 0.00 0 17 100 2 699.85236 1398.69744 2.89 35.37 2294 2294 MS2 13/22 Linfeng_20120515_BRCA1_3.raw High SSGPTSLFAVTVAPPGAR Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 CID 1.0000 0.0000 1 1 522 2.31 0.00 0 9 100 2 857.95978 1714.91228 -0.04 48.03 4364 4364 MS2 12/34 Linfeng_20120514_rIgG_3.raw High YNILGTNTImDK Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 M10(Oxidation) CID 1.0000 0.0000 1 1 504 2.37 0.00 0 9 100 2 699.85242 1398.69756 2.97 36.30 2430 2430 MS2 17/22 Linfeng_20120514_rIgG_4.raw High SSGPTSLFAVTVAPPGAR Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 CID 1.0000 0.0000 1 1 488 2.49 0.00 0 30 100 2 857.96118 1714.91509 1.60 47.58 4076 4076 MS2 12/34 Linfeng_20120515_BRCA1_4.raw High YNILGTNTImDK Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 M10(Oxidation) CID 1.0000 0.0000 1 1 503 2.77 0.00 0 8 100 2 699.85248 1398.69768 3.06 36.39 2421 2421 MS2 16/22 Linfeng_20120515_BRCA1_3.raw High SSGPTSLFAVTVAPPGAR Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 CID 1.0000 0.0000 1 1 546 2.78 0.00 0 19 100 2 857.96106 1714.91484 1.45 46.99 4133 4133 MS2 15/34 Linfeng_20120514_rIgG_3.raw High SSGPTSLFAVTVAPPGAR Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 CID 1.0000 0.0000 1 1 536 2.99 0.00 0 27 100 2 857.95972 1714.91216 -0.11 47.21 3863 3863 MS2 14/34 Linfeng_20120515_BRCA1_3.raw High NFILDQTNVSAAAQR Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 CID 1.0000 0.0000 1 1 608 3.29 0.00 0 3 100 2 824.42749 1647.84770 1.65 38.13 2639 2639 MS2 21/28 Linfeng_20120514_rIgG_4.raw High YNILGTNTImDK Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 M10(Oxidation) CID 1.0000 0.0000 1 1 482 3.36 0.00 0 2 100 2 699.85175 1398.69621 2.01 36.12 2714 2714 MS2 18/22 Linfeng_20120514_rIgG_3.raw High NFILDQTNVSAAAQR Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 CID 1.0000 0.0000 1 1 634 3.89 0.00 0 5 100 2 824.42761 1647.84795 1.80 37.96 2934 2934 MS2 22/28 Linfeng_20120514_rIgG_3.raw High NFILDQTNVSAAAQR Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 CID 1.0000 0.0000 1 1 646 4.42 0.00 0 38 100 2 824.42694 1647.84661 0.99 38.23 2625 2625 MS2 21/28 Linfeng_20120515_BRCA1_3.raw High NFILDQTNVSAAAQR Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 CID 1.0000 0.0000 1 1 625 4.56 0.00 0 6 100 2 824.42688 1647.84648 0.91 38.98 3062 3062 MS2 23/28 Linfeng_20120514_rIgG_3.raw IPI00398625.5 Hornerin 6.60 1 5 5 6 18.15 6.60 5 6 0.00 2850 282.2 10.04 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File Medium GQHSSGSGQSPGHGQR Unambiguous 1 1 IPI00398625.5 CID 1.0000 0.0000 1 1 226 2.37 0.00 0 8 100 3 521.90546 1563.70182 0.67 11.86 645 645 MS2 27/60 Linfeng_20120514_rIgG_2.raw Medium GQHSSGSGQSPGHGQR Unambiguous 1 1 IPI00398625.5 CID 1.0000 0.0000 1 1 201 2.43 0.00 0 4 100 3 521.90417 1563.69797 -1.78 11.85 642 642 MS2 31/60 Linfeng_20120514_rIgG_3.raw High QSLGHGQHGSGSGQSPSPSR Unambiguous 1 1 IPI00398625.5 CID 1.0000 0.0000 1 1 333 2.77 0.00 0 5 100 3 649.97162 1947.90030 -0.70 12.45 698 698 MS2 29/76 Linfeng_20120514_rIgG_3.raw High HGAGSGQSLSHGR Unambiguous 1 1 IPI00398625.5 CID 1.0000 0.0000 1 1 464 3.13 0.00 0 6 100 3 417.53763 1250.59833 -0.15 12.20 674 674 MS2 21/48 Linfeng_20120514_rIgG_3.raw High GEQHGSSSGSSSSYGQHGSGSR Unambiguous 1 1 IPI00398625.5 CID 1.0000 0.0000 1 1 53 3.24 0.00 0 3 100 3 708.29688 2122.87607 -0.41 12.18 670 670 MS2 28/84 Linfeng_20120514_rIgG_3.raw High HGSSSGSSSSYGQHGSGSR Unambiguous 1 1 IPI00398625.5 CID 1.0000 0.0000 1 1 80 4.21 0.00 0 2 100 3 603.58942 1808.75370 -0.33 12.08 662 662 MS2 31/72 Linfeng_20120514_rIgG_3.raw IPI00930098.1 IRIS 3.88 1 0 5 8 22.66 3.88 5 8 1598 178.2 5.57 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High IPPLFPIK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 113 2.03 0.00 0 0 27 2 462.79968 924.59209 0.36 48.97 4299 4299 MS2 12/14 Linfeng_20120515_BRCA1_3.raw High LGVLQPEVYK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 508 2.36 0.00 0 44 100 2 573.33374 1145.66020 3.21 35.79 2393 2393 MS2 11/18 Linfeng_20120515_BRCA1_4.raw High LGVLQPEVYK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 437 2.42 0.00 0 9 100 2 573.33313 1145.65898 2.14 36.18 2264 2264 MS2 11/18 Linfeng_20120515_BRCA1_2.raw Medium HIHALELVVSR Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 336 2.44 0.00 0 30 100 3 425.25137 1273.73957 1.56 47.75 3993 3993 MS2 23/40 Linfeng_20120515_BRCA1_3.raw High NESNIKPVQTVNITAGFPVVGQK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 301 3.01 0.00 1 18 100 3 814.11078 2440.31778 -0.73 44.51 3226 3226 MS2 25/88 Linfeng_20120515_BRCA1_3.raw High FSQLVEELLK Unambiguous 6 6 IPI00218982.1;IPI00909467.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1 CID 1.0000 0.0000 1 1 472 3.32 0.00 0 2 14 2 603.34302 1205.67876 0.90 48.99 4307 4307 MS2 16/18 Linfeng_20120515_BRCA1_3.raw High NESNIKPVQTVNITAGFPVVGQK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 308 3.52 0.00 1 8 100 3 814.11060 2440.31723 -0.95 44.79 3294 3294 MS2 24/88 Linfeng_20120515_BRCA1_3.raw High NESNIKPVQTVNITAGFPVVGQK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 256 3.56 0.00 1 28 100 3 814.11230 2440.32236 1.15 45.07 3360 3360 MS2 22/88 Linfeng_20120515_BRCA1_3.raw IPI00218982.1 Isoform 1 of Breast cancer type 1 susceptibility protein 3.33 1 0 5 8 22.66 3.33 5 8 1863 207.6 5.41 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High IPPLFPIK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 113 2.03 0.00 0 0 27 2 462.79968 924.59209 0.36 48.97 4299 4299 MS2 12/14 Linfeng_20120515_BRCA1_3.raw High LGVLQPEVYK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 508 2.36 0.00 0 44 100 2 573.33374 1145.66020 3.21 35.79 2393 2393 MS2 11/18 Linfeng_20120515_BRCA1_4.raw High LGVLQPEVYK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 437 2.42 0.00 0 9 100 2 573.33313 1145.65898 2.14 36.18 2264 2264 MS2 11/18 Linfeng_20120515_BRCA1_2.raw Medium HIHALELVVSR Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 336 2.44 0.00 0 30 100 3 425.25137 1273.73957 1.56 47.75 3993 3993 MS2 23/40 Linfeng_20120515_BRCA1_3.raw High NESNIKPVQTVNITAGFPVVGQK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 301 3.01 0.00 1 18 100 3 814.11078 2440.31778 -0.73 44.51 3226 3226 MS2 25/88 Linfeng_20120515_BRCA1_3.raw High FSQLVEELLK Unambiguous 6 6 IPI00218982.1;IPI00909467.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1 CID 1.0000 0.0000 1 1 472 3.32 0.00 0 2 14 2 603.34302 1205.67876 0.90 48.99 4307 4307 MS2 16/18 Linfeng_20120515_BRCA1_3.raw High NESNIKPVQTVNITAGFPVVGQK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 308 3.52 0.00 1 8 100 3 814.11060 2440.31723 -0.95 44.79 3294 3294 MS2 24/88 Linfeng_20120515_BRCA1_3.raw High NESNIKPVQTVNITAGFPVVGQK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 256 3.56 0.00 1 28 100 3 814.11230 2440.32236 1.15 45.07 3360 3360 MS2 22/88 Linfeng_20120515_BRCA1_3.raw IPI00217357.2 Isoform 1 of Cell division cycle and apoptosis regulator protein 1 7.30 1 0 6 14 35.91 7.30 6 14 1150 132.7 5.76 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High VLVEATYNPNmPFK Unambiguous 2 2 IPI00217357.2;IPI00939119.1 M11(Oxidation) CID 1.0000 0.0000 1 1 585 2.07 0.00 0 0 100 2 819.91528 1638.82329 2.20 37.43 2629 2629 MS2 12/26 Linfeng_20120515_BRCA1_4.raw High DLSQLQENLK Unambiguous 2 2 IPI00217357.2;IPI00939119.1 CID 1.0000 0.0000 1 1 692 2.10 0.00 0 27 100 2 594.31934 1187.63140 3.96 34.02 2102 2102 MS2 12/18 Linfeng_20120515_BRCA1_3.raw High DLSQLQENLK Unambiguous 2 2 IPI00217357.2;IPI00939119.1 CID 1.0000 0.0000 1 1 644 2.11 0.00 0 36 100 2 594.31866 1187.63005 2.83 34.94 2298 2298 MS2 13/18 Linfeng_20120515_BRCA1_7.raw High VLVEATYNPNmPFK Unambiguous 2 2 IPI00217357.2;IPI00939119.1 M11(Oxidation) CID 1.0000 0.0000 1 1 540 2.17 0.00 0 12 100 2 819.91577 1638.82427 2.80 37.09 2508 2508 MS2 14/26 Linfeng_20120515_BRCA1_3.raw High IQTLPNQNQSQTQPLLK Unambiguous 2 2 IPI00217357.2;IPI00939119.1 CID 1.0000 0.0000 1 1 322 2.22 0.00 0 0 100 2 976.03754 1951.06780 3.60 31.45 2054 2054 MS2 17/32 Linfeng_20120515_BRCA1_5.raw High DLSQLQENLK Unambiguous 2 2 IPI00217357.2;IPI00939119.1 CID 1.0000 0.0000 1 1 674 2.41 0.00 0 29 100 2 594.31921 1187.63115 3.76 34.12 2170 2170 MS2 10/18 Linfeng_20120515_BRCA1_7.raw High VLVEATYNPNmPFK Unambiguous 2 2 IPI00217357.2;IPI00939119.1 M11(Oxidation) CID 1.0000 0.0000 1 1 521 2.45 0.00 0 5 100 2 819.91583 1638.82439 2.88 36.95 2568 2568 MS2 14/26 Linfeng_20120515_BRCA1_7.raw High DLSQLQENLK Unambiguous 2 2 IPI00217357.2;IPI00939119.1 CID 1.0000 0.0000 1 1 677 2.72 0.00 0 20 100 2 594.31921 1187.63115 3.76 34.12 2115 2115 MS2 14/18 Linfeng_20120515_BRCA1_3.raw High PFQLGNYcNFYVmHR Unambiguous 2 2 IPI00217357.2;IPI00939119.1 C8(Carbamidomethyl); M13(Oxidation) CID 1.0000 0.0000 1 1 229 2.76 0.00 0 19 100 3 654.63080 1961.87784 -0.38 45.88 3673 3673 MS2 16/56 Linfeng_20120515_BRCA1_4.raw High PFQLGNYcNFYVmHR Unambiguous 2 2 IPI00217357.2;IPI00939119.1 C8(Carbamidomethyl); M13(Oxidation) CID 1.0000 0.0000 1 1 227 2.81 0.00 0 0 100 3 654.63098 1961.87839 -0.10 45.79 3531 3531 MS2 19/56 Linfeng_20120515_BRCA1_3.raw High PFQLGNYcNFYVmHR Unambiguous 2 2 IPI00217357.2;IPI00939119.1 C8(Carbamidomethyl); M13(Oxidation) CID 1.0000 0.0000 1 1 227 2.85 0.00 0 11 100 3 654.63092 1961.87821 -0.19 44.82 4360 4360 MS2 21/56 Linfeng_20120515_BRCA1_5.raw High VLVEATYNPNmPFK Unambiguous 2 2 IPI00217357.2;IPI00939119.1 M11(Oxidation) CID 1.0000 0.0000 1 1 562 2.93 0.00 0 9 100 2 819.91534 1638.82341 2.28 36.90 3189 3189 MS2 14/26 Linfeng_20120515_BRCA1_5.raw High FSLDcPScDmmELR Unambiguous 2 2 IPI00217357.2;IPI00939119.1 C5(Carbamidomethyl); C8(Carbamidomethyl); M10(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 26 3.13 0.00 0 17 100 2 896.85541 1792.70354 1.42 35.57 2932 2932 MS2 15/26 Linfeng_20120515_BRCA1_5.raw High NLSTVmDEIHTVLK Unambiguous 2 2 IPI00217357.2;IPI00939119.1 M6(Oxidation) CID 1.0000 0.0000 1 1 588 3.18 0.00 0 36 100 2 808.42145 1615.83562 -0.27 48.54 4181 4181 MS2 17/26 Linfeng_20120515_BRCA1_3.raw IPI00296337.2 Isoform 1 of DNA-dependent protein kinase catalytic subunit 1.79 1 0 6 11 0.00 27.62 1.79 6 11 4128 468.8 7.12 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High SIGEYDVLR Unambiguous 3 3 IPI00296337.2;IPI00376215.2;IPI00786995.1 CID 1.0000 0.0000 1 1 456 2.00 0.00 0 34 100 2 526.27618 1051.54509 3.04 35.02 2249 2249 MS2 11/16 Linfeng_20120515_BRCA1_3.raw High DQNILLGTTYR Unambiguous 3 3 IPI00296337.2;IPI00376215.2;IPI00786995.1 CID 1.0000 0.0000 1 1 570 2.16 0.00 0 5 100 2 647.34412 1293.68096 0.91 37.16 2362 2362 MS2 13/20 Linfeng_20120515_BRCA1_2.raw Medium VLEQLIVAHFPmQSR Unambiguous 3 3 IPI00296337.2;IPI00376215.2;IPI00786995.1 M12(Oxidation) CID 1.0000 0.0000 1 1 477 2.33 0.00 0 2 100 3 595.32263 1783.95334 0.51 48.61 4198 4198 MS2 18/56 Linfeng_20120515_BRCA1_3.raw High LLALNSLYSPK Unambiguous 3 3 IPI00296337.2;IPI00376215.2;IPI00786995.1 CID 1.0000 0.0000 1 1 295 2.34 0.00 0 59 100 2 609.85815 1218.70903 -0.21 45.89 3676 3676 MS2 12/20 Linfeng_20120515_BRCA1_4.raw High LLALNSLYSPK Unambiguous 3 3 IPI00296337.2;IPI00376215.2;IPI00786995.1 CID 1.0000 0.0000 1 1 299 2.35 0.00 0 60 100 2 609.85809 1218.70891 -0.31 45.78 3529 3529 MS2 11/20 Linfeng_20120515_BRCA1_3.raw High LLALNSLYSPK Unambiguous 3 3 IPI00296337.2;IPI00376215.2;IPI00786995.1 CID 1.0000 0.0000 1 1 296 2.36 0.00 0 47 100 2 609.85852 1218.70976 0.39 45.92 3560 3560 MS2 11/20 Linfeng_20120515_BRCA1_3.raw High LLALNSLYSPK Unambiguous 3 3 IPI00296337.2;IPI00376215.2;IPI00786995.1 CID 1.0000 0.0000 1 1 298 2.47 0.00 0 30 100 2 609.85876 1218.71025 0.79 46.00 3578 3578 MS2 13/20 Linfeng_20120515_BRCA1_3.raw High mSTSPEAFLALR Unambiguous 3 3 IPI00296337.2;IPI00376215.2;IPI00786995.1 M1(Oxidation) CID 1.0000 0.0000 1 1 455 2.60 0.00 0 10 100 2 669.84003 1338.67278 0.37 45.51 3465 3465 MS2 13/22 Linfeng_20120515_BRCA1_3.raw High VLEQLIVAHFPmQSR Unambiguous 3 3 IPI00296337.2;IPI00376215.2;IPI00786995.1 M12(Oxidation) CID 1.0000 0.0000 1 1 471 2.92 0.00 0 13 100 3 595.32208 1783.95169 -0.42 48.56 4534 4534 MS2 23/56 Linfeng_20120515_BRCA1_1.raw High mSTSPEAFLALR Unambiguous 3 3 IPI00296337.2;IPI00376215.2;IPI00786995.1 M1(Oxidation) CID 1.0000 0.0000 1 1 459 2.97 0.00 0 11 100 2 669.84009 1338.67290 0.46 45.33 3422 3422 MS2 15/22 Linfeng_20120515_BRCA1_3.raw High TVSLLDENNVSSYLSK Unambiguous 2 2 IPI00296337.2;IPI00376215.2 CID 1.0000 0.0000 1 1 510 3.12 0.00 0 46 100 2 884.95270 1768.89812 0.98 46.14 3611 3611 MS2 13/30 Linfeng_20120515_BRCA1_3.raw IPI00003865.1 Isoform 1 of Heat shock cognate 71 kDa protein 8.20 1 0 5 10 0.00 30.35 8.20 5 10 646 70.9 5.52 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High DAGTIAGLNVLR Unambiguous 4 4 IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00910870.1 CID 1.0000 0.0000 1 1 546 2.22 0.00 0 33 100 2 600.34082 1199.67436 0.03 43.37 3116 3116 MS2 12/22 Linfeng_20120515_BRCA1_4.raw High TTPSYVAFTDTER Unambiguous 10 10 IPI00304925.5;IPI00007702.1;IPI00339269.1;IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00845339.1;IPI00910870.1;IPI00911039.1;IPI00941328.1 CID 1.0000 0.0000 1 1 372 2.36 0.00 0 0 100 2 744.35620 1487.70513 2.56 33.88 2120 2120 MS2 16/24 Linfeng_20120515_BRCA1_4.raw High FEELNADLFR Unambiguous 4 4 IPI00007702.1;IPI00003865.1;IPI00939595.1;IPI00037070.3 CID 1.0000 0.0000 1 1 478 2.61 0.00 0 17 100 2 627.31256 1253.61785 1.36 46.79 3890 3890 MS2 13/18 Linfeng_20120515_BRCA1_4.raw High ARFEELNADLFR Unambiguous 4 4 IPI00007702.1;IPI00003865.1;IPI00939595.1;IPI00037070.3 CID 1.0000 0.0000 1 1 565 2.68 0.00 1 18 100 3 494.25662 1480.75531 0.63 48.01 4179 4179 MS2 20/44 Linfeng_20120515_BRCA1_4.raw High TTPSYVAFTDTER Unambiguous 10 10 IPI00304925.5;IPI00007702.1;IPI00339269.1;IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00845339.1;IPI00910870.1;IPI00911039.1;IPI00941328.1 CID 1.0000 0.0000 1 1 332 2.70 0.00 0 21 100 2 744.35712 1487.70696 3.79 34.89 2274 2274 MS2 16/24 Linfeng_20120515_BRCA1_4.raw High ARFEELNADLFR Unambiguous 4 4 IPI00007702.1;IPI00003865.1;IPI00939595.1;IPI00037070.3 CID 1.0000 0.0000 1 1 574 2.77 0.00 1 2 100 3 494.25644 1480.75476 0.26 48.46 4289 4289 MS2 20/44 Linfeng_20120515_BRCA1_4.raw High IINEPTAAAIAYGLDK Unambiguous 5 5 IPI00007702.1;IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00910870.1 CID 1.0000 0.0000 1 1 500 3.34 0.00 0 14 100 2 830.45135 1659.89543 0.09 45.10 3488 3488 MS2 19/30 Linfeng_20120515_BRCA1_4.raw High IINEPTAAAIAYGLDK Unambiguous 5 5 IPI00007702.1;IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00910870.1 CID 1.0000 0.0000 1 1 584 3.73 0.00 0 47 100 3 553.96954 1659.89408 -0.73 45.28 3532 3532 MS2 28/60 Linfeng_20120515_BRCA1_4.raw High IINEPTAAAIAYGLDK Unambiguous 5 5 IPI00007702.1;IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00910870.1 CID 1.0000 0.0000 1 1 515 3.86 0.00 0 10 100 2 830.45166 1659.89604 0.45 45.49 3580 3580 MS2 21/30 Linfeng_20120515_BRCA1_4.raw High IINEPTAAAIAYGLDK Unambiguous 5 5 IPI00007702.1;IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00910870.1 CID 1.0000 0.0000 1 1 443 4.08 0.00 0 8 100 2 830.45184 1659.89641 0.67 45.39 3558 3558 MS2 21/30 Linfeng_20120515_BRCA1_4.raw IPI00009866.7 "Isoform 1 of Keratin, type I cytoskeletal 13" 7.42 1 0 3 17 40.55 7.42 3 17 0.00 458 49.6 4.96 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High QSVEADINGLR Unambiguous 3 3 IPI00009865.4;IPI00009866.7;IPI00171196.2 CID 1.0000 0.0000 1 1 470 2.00 0.00 0 22 100 2 601.31342 1201.61955 1.96 32.16 2087 2087 MS2 11/20 Linfeng_20120514_rIgG_8.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 512 2.06 0.00 0 5 100 2 651.33282 1301.65837 -0.03 25.69 1470 1470 MS2 11/22 Linfeng_20120514_rIgG_3.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 512 2.17 0.00 0 4 100 2 651.33337 1301.65947 0.81 27.49 1653 1653 MS2 15/22 Linfeng_20120514_rIgG_2.raw High QSVEADINGLR Unambiguous 3 3 IPI00009865.4;IPI00009866.7;IPI00171196.2 CID 1.0000 0.0000 1 1 509 2.19 0.00 0 31 100 2 601.31329 1201.61931 1.76 32.50 2114 2114 MS2 11/20 Linfeng_20120514_rIgG_10.raw High QSVEADINGLR Unambiguous 3 3 IPI00009865.4;IPI00009866.7;IPI00171196.2 CID 1.0000 0.0000 1 1 484 2.24 0.00 0 13 100 2 601.31317 1201.61907 1.55 31.85 2175 2175 MS2 12/20 Linfeng_20120514_rIgG_2.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 512 2.26 0.00 0 6 100 2 651.33344 1301.65959 0.91 27.53 1657 1657 MS2 13/22 Linfeng_20120514_rIgG_2.raw High QSVEADINGLR Unambiguous 3 3 IPI00009865.4;IPI00009866.7;IPI00171196.2 CID 1.0000 0.0000 1 1 484 2.26 0.00 0 14 100 2 601.31323 1201.61919 1.65 32.35 2107 2107 MS2 13/20 Linfeng_20120514_rIgG_8.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 538 2.27 0.00 0 4 100 2 651.33398 1301.66069 1.75 27.68 1655 1655 MS2 16/22 Linfeng_20120514_rIgG_3.raw High QSVEADINGLR Unambiguous 3 3 IPI00009865.4;IPI00009866.7;IPI00171196.2 CID 1.0000 0.0000 1 1 519 2.30 0.00 0 26 100 2 601.31329 1201.61931 1.76 32.67 2141 2141 MS2 13/20 Linfeng_20120514_rIgG_10.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 546 2.42 0.00 0 7 100 2 651.33398 1301.66069 1.75 27.72 1661 1661 MS2 16/22 Linfeng_20120514_rIgG_3.raw High TRLEQEIATYR Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 589 2.42 0.00 1 8 100 2 690.36853 1379.72978 1.44 35.74 2658 2658 MS2 12/20 Linfeng_20120514_rIgG_3.raw High TRLEQEIATYR Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 500 2.43 0.00 1 0 100 2 690.36963 1379.73198 3.03 36.40 2702 2702 MS2 11/20 Linfeng_20120514_rIgG_1.raw High QSVEADINGLR Unambiguous 3 3 IPI00009865.4;IPI00009866.7;IPI00171196.2 CID 1.0000 0.0000 1 1 538 2.51 0.00 0 13 100 2 601.31256 1201.61785 0.54 31.89 2182 2182 MS2 12/20 Linfeng_20120514_rIgG_2.raw High QSVEADINGLR Unambiguous 3 3 IPI00009865.4;IPI00009866.7;IPI00171196.2 CID 1.0000 0.0000 1 1 460 2.54 0.00 0 15 100 2 601.31348 1201.61968 2.06 32.50 2123 2123 MS2 14/20 Linfeng_20120514_rIgG_8.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 547 2.56 0.00 0 6 100 2 651.33234 1301.65740 -0.78 25.32 1452 1452 MS2 15/22 Linfeng_20120514_rIgG_2.raw High QSVEADINGLR Unambiguous 3 3 IPI00009865.4;IPI00009866.7;IPI00171196.2 CID 1.0000 0.0000 1 1 517 2.88 0.00 0 26 100 2 601.31378 1201.62029 2.57 32.60 2129 2129 MS2 15/20 Linfeng_20120514_rIgG_10.raw High TRLEQEIATYR Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 510 3.04 0.00 1 4 100 2 690.36951 1379.73174 2.85 36.20 2681 2681 MS2 15/20 Linfeng_20120514_rIgG_1.raw IPI00871617.1 Isoform 1 of Lys-63-specific deubiquitinase BRCC36 15.46 1 3 3 3 8.74 15.46 3 3 291 33.1 5.95 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High VLYTcFQSIQAQK Unambiguous 1 1 IPI00871617.1 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 532 2.35 0.00 0 2 100 2 793.40631 1585.80535 0.64 37.91 2660 2660 MS2 15/24 Linfeng_20120515_BRCA1_7.raw High IEIPIHIVPHVTIGK Unambiguous 1 1 IPI00871617.1 CID 1.0000 0.0000 1 1 79 2.54 0.00 0 11 100 3 556.00623 1666.00412 -0.59 48.41 4192 4192 MS2 20/56 Linfeng_20120515_BRCA1_7.raw High VEISPEQLSAASTEAER Unambiguous 1 1 IPI00871617.1 CID 1.0000 0.0000 1 1 495 3.85 0.00 0 13 100 2 908.95227 1816.89726 2.68 35.72 2400 2400 MS2 21/32 Linfeng_20120515_BRCA1_7.raw IPI00015953.3 Isoform 1 of Nucleolar RNA helicase 2 6.26 1 0 4 9 11.37 4.85 3 5 10.27 4.73 3 4 783 87.3 9.28 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High EMNGETREKSPK Unambiguous 2 2 IPI00015953.3;IPI00477179.1 CID 1.0000 0.0000 1 1 423 2.01 0.00 2 68 100 2 703.34052 1405.67375 -0.23 45.59 4077 4077 MS2 10/22 Linfeng_20120514_rIgG_1.raw High EGAFSNFPISEETIK Unambiguous 2 2 IPI00015953.3;IPI00477179.1 CID 1.0000 0.0000 1 1 516 2.16 0.00 0 21 100 2 834.90936 1668.81145 -0.10 46.30 3784 3784 MS2 10/28 Linfeng_20120514_rIgG_4.raw High APQVLVLAPTR Unambiguous 2 2 IPI00015953.3;IPI00477179.1 CID 1.0000 0.0000 1 1 81 2.18 0.00 0 57 100 2 582.86053 1164.71379 3.27 36.51 2437 2437 MS2 12/20 Linfeng_20120515_BRCA1_3.raw High EGAFSNFPISEETIK Unambiguous 2 2 IPI00015953.3;IPI00477179.1 CID 1.0000 0.0000 1 1 488 2.26 0.00 0 51 100 2 834.90997 1668.81267 0.63 45.41 3576 3576 MS2 14/28 Linfeng_20120514_rIgG_4.raw High STYEQVDLIGK Unambiguous 2 2 IPI00015953.3;IPI00477179.1 CID 1.0000 0.0000 1 1 549 2.32 0.00 0 24 100 2 626.82605 1252.64482 2.25 32.35 1896 1896 MS2 12/20 Linfeng_20120515_BRCA1_3.raw High EGAFSNFPISEETIK Unambiguous 2 2 IPI00015953.3;IPI00477179.1 CID 1.0000 0.0000 1 1 463 2.32 0.00 0 32 100 2 834.90936 1668.81145 -0.10 45.76 3658 3658 MS2 14/28 Linfeng_20120514_rIgG_4.raw High APQVLVLAPTR Unambiguous 2 2 IPI00015953.3;IPI00477179.1 CID 1.0000 0.0000 1 1 80 2.63 0.00 0 30 100 2 582.86029 1164.71330 2.85 36.32 2433 2433 MS2 14/20 Linfeng_20120514_rIgG_4.raw High EGAFSNFPISEETIK Unambiguous 2 2 IPI00015953.3;IPI00477179.1 CID 1.0000 0.0000 1 1 491 2.87 0.00 0 31 100 2 834.91052 1668.81377 1.29 45.53 3470 3470 MS2 10/28 Linfeng_20120515_BRCA1_3.raw High EGAFSNFPISEETIK Unambiguous 2 2 IPI00015953.3;IPI00477179.1 CID 1.0000 0.0000 1 1 490 2.90 0.00 0 38 100 2 834.91071 1668.81413 1.51 46.01 3582 3582 MS2 13/28 Linfeng_20120515_BRCA1_3.raw IPI00167773.2 Isoform 1 of Protein BANP 7.32 1 0 3 6 17.44 7.32 3 6 519 56.4 5.49 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High FGITESDWYR Unambiguous 3 3 IPI00956625.1;IPI00167773.2;IPI00852875.4 CID 1.0000 0.0000 1 1 245 2.16 0.00 0 33 100 2 637.29535 1273.58342 -1.10 43.97 4157 4157 MS2 11/18 Linfeng_20120515_BRCA1_5.raw High FGITESDWYR Unambiguous 3 3 IPI00956625.1;IPI00167773.2;IPI00852875.4 CID 1.0000 0.0000 1 1 214 2.59 0.00 0 26 100 2 637.29431 1273.58135 -2.73 44.09 4185 4185 MS2 14/18 Linfeng_20120515_BRCA1_5.raw High FGITESDWYR Unambiguous 3 3 IPI00956625.1;IPI00167773.2;IPI00852875.4 CID 1.0000 0.0000 1 1 234 2.69 0.00 0 21 100 2 637.29559 1273.58391 -0.72 44.25 3282 3282 MS2 12/18 Linfeng_20120515_BRCA1_4.raw High APDSLENVISNAVPGR Unambiguous 3 3 IPI00956625.1;IPI00167773.2;IPI00852875.4 CID 1.0000 0.0000 1 1 542 3.14 0.00 0 8 100 2 819.92682 1638.84636 1.04 46.64 3854 3854 MS2 15/30 Linfeng_20120515_BRCA1_4.raw High mALTLLDYLFHR Unambiguous 3 3 IPI00956625.1;IPI00167773.2;IPI00852875.4 M1(Oxidation) CID 1.0000 0.0000 1 1 455 3.31 0.00 0 32 100 2 754.89941 1508.79155 -1.00 55.39 5263 5263 MS2 19/22 Linfeng_20120515_BRCA1_4.raw High mALTLLDYLFHR Unambiguous 3 3 IPI00956625.1;IPI00167773.2;IPI00852875.4 M1(Oxidation) CID 1.0000 0.0000 1 1 480 3.56 0.00 0 10 100 2 754.90021 1508.79314 0.05 55.40 5095 5095 MS2 18/22 Linfeng_20120515_BRCA1_6.raw IPI00013174.2 Isoform 1 of RNA-binding protein 14 5.98 1 3 3 3 8.50 5.98 3 3 669 69.4 9.67 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High LSESQLSFR Unambiguous 1 1 IPI00013174.2 CID 1.0000 0.0000 1 1 483 2.16 0.00 0 6 100 2 533.78143 1066.55559 2.62 31.63 1829 1829 MS2 13/16 Linfeng_20120515_BRCA1_4.raw High ASYVAPLTAQPATYR Unambiguous 1 1 IPI00013174.2 CID 1.0000 0.0000 1 1 538 2.75 0.00 0 3 100 2 804.92407 1608.84087 1.73 33.63 2085 2085 MS2 14/28 Linfeng_20120515_BRCA1_4.raw High IFVGNVSAAcTSQELR Unambiguous 1 1 IPI00013174.2 C10(Carbamidomethyl) CID 1.0000 0.0000 1 1 558 3.59 0.00 0 7 100 2 876.44342 1751.87956 2.85 36.23 2453 2453 MS2 18/30 Linfeng_20120515_BRCA1_4.raw IPI00064241.4 Isoform 1 of Zinc finger protein Eos 11.97 1 0 4 11 34.57 11.97 4 11 585 64.1 6.86 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File Medium VAGVVSLPQGPPPQPPPTIVVGR Unambiguous 2 2 IPI00064241.4;IPI00797730.1 CID 1.0000 0.0000 1 1 120 2.31 0.00 0 10 100 3 754.76855 2262.29111 -2.60 44.07 4180 4180 MS2 20/88 Linfeng_20120515_BRCA1_5.raw High VAGVVSLPQGPPPQPPPTIVVGR Unambiguous 2 2 IPI00064241.4;IPI00797730.1 CID 1.0000 0.0000 1 1 121 2.51 0.00 0 57 100 3 754.76880 2262.29184 -2.28 44.44 3329 3329 MS2 22/88 Linfeng_20120515_BRCA1_4.raw High VAGVVSLPQGPPPQPPPTIVVGR Unambiguous 2 2 IPI00064241.4;IPI00797730.1 CID 1.0000 0.0000 1 1 126 2.81 0.00 0 36 100 3 754.76819 2262.29001 -3.08 43.86 4130 4130 MS2 25/88 Linfeng_20120515_BRCA1_5.raw High VAGVVSLPQGPPPQPPPTIVVGR Unambiguous 2 2 IPI00064241.4;IPI00797730.1 CID 1.0000 0.0000 1 1 118 2.82 0.00 0 26 100 3 754.76959 2262.29422 -1.22 43.85 3190 3190 MS2 28/88 Linfeng_20120515_BRCA1_4.raw High VAGVVSLPQGPPPQPPPTIVVGR Unambiguous 2 2 IPI00064241.4;IPI00797730.1 CID 1.0000 0.0000 1 1 121 2.89 0.00 0 32 100 3 754.76880 2262.29184 -2.28 44.11 4189 4189 MS2 24/88 Linfeng_20120515_BRCA1_5.raw High VAGVVSLPQGPPPQPPPTIVVGR Unambiguous 2 2 IPI00064241.4;IPI00797730.1 CID 1.0000 0.0000 1 1 123 2.99 0.00 0 47 100 3 754.76910 2262.29276 -1.87 43.79 4113 4113 MS2 24/88 Linfeng_20120515_BRCA1_5.raw High DVELVAHHSLEPGFGSSLAFVGAEHLRPLR Unambiguous 2 2 IPI00064241.4;IPI00797730.1 CID 1.0000 0.0000 1 1 319 3.10 0.00 1 77 74 5 648.94440 3240.69288 0.45 48.67 5321 5321 MS2 43/232 Linfeng_20120515_BRCA1_5.raw High VAGVVSLPQGPPPQPPPTIVVGR Unambiguous 2 2 IPI00064241.4;IPI00797730.1 CID 1.0000 0.0000 1 1 120 3.28 0.00 0 49 100 3 754.76837 2262.29056 -2.84 44.51 3346 3346 MS2 27/88 Linfeng_20120515_BRCA1_4.raw High FSLSDLPYDVNSGGYEK Unambiguous 2 2 IPI00064241.4;IPI00797730.1 CID 1.0000 0.0000 1 1 270 3.47 0.00 0 35 100 2 945.94189 1890.87651 0.45 48.26 4240 4240 MS2 18/32 Linfeng_20120515_BRCA1_4.raw High DVELVAHHSLEPGFGSSLAFVGAEHLR Unambiguous 2 2 IPI00064241.4;IPI00797730.1 CID 1.0000 0.0000 1 1 455 3.62 0.00 0 29 100 4 719.36804 2874.45034 -1.08 48.61 4328 4328 MS2 51/156 Linfeng_20120515_BRCA1_4.raw High DVELVAHHSLEPGFGSSLAFVGAEHLR Unambiguous 2 2 IPI00064241.4;IPI00797730.1 CID 1.0000 0.0000 1 1 451 4.76 0.00 0 16 20 4 719.36884 2874.45351 0.02 48.65 5316 5316 MS2 45/156 Linfeng_20120515_BRCA1_5.raw IPI00945705.1 Isoform 2 of Breast cancer type 1 susceptibility protein 3.29 1 0 5 8 22.66 3.29 5 8 1885 210.2 5.50 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High IPPLFPIK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 113 2.03 0.00 0 0 27 2 462.79968 924.59209 0.36 48.97 4299 4299 MS2 12/14 Linfeng_20120515_BRCA1_3.raw High LGVLQPEVYK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 508 2.36 0.00 0 44 100 2 573.33374 1145.66020 3.21 35.79 2393 2393 MS2 11/18 Linfeng_20120515_BRCA1_4.raw High LGVLQPEVYK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 437 2.42 0.00 0 9 100 2 573.33313 1145.65898 2.14 36.18 2264 2264 MS2 11/18 Linfeng_20120515_BRCA1_2.raw Medium HIHALELVVSR Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 336 2.44 0.00 0 30 100 3 425.25137 1273.73957 1.56 47.75 3993 3993 MS2 23/40 Linfeng_20120515_BRCA1_3.raw High NESNIKPVQTVNITAGFPVVGQK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 301 3.01 0.00 1 18 100 3 814.11078 2440.31778 -0.73 44.51 3226 3226 MS2 25/88 Linfeng_20120515_BRCA1_3.raw High FSQLVEELLK Unambiguous 6 6 IPI00218982.1;IPI00909467.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1 CID 1.0000 0.0000 1 1 472 3.32 0.00 0 2 14 2 603.34302 1205.67876 0.90 48.99 4307 4307 MS2 16/18 Linfeng_20120515_BRCA1_3.raw High NESNIKPVQTVNITAGFPVVGQK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 308 3.52 0.00 1 8 100 3 814.11060 2440.31723 -0.95 44.79 3294 3294 MS2 24/88 Linfeng_20120515_BRCA1_3.raw High NESNIKPVQTVNITAGFPVVGQK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 256 3.56 0.00 1 28 100 3 814.11230 2440.32236 1.15 45.07 3360 3360 MS2 22/88 Linfeng_20120515_BRCA1_3.raw IPI00939119.1 Isoform 2 of Cell division cycle and apoptosis regulator protein 1 7.40 1 0 6 14 35.91 7.40 6 14 1135 131.0 5.76 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High VLVEATYNPNmPFK Unambiguous 2 2 IPI00217357.2;IPI00939119.1 M11(Oxidation) CID 1.0000 0.0000 1 1 585 2.07 0.00 0 0 100 2 819.91528 1638.82329 2.20 37.43 2629 2629 MS2 12/26 Linfeng_20120515_BRCA1_4.raw High DLSQLQENLK Unambiguous 2 2 IPI00217357.2;IPI00939119.1 CID 1.0000 0.0000 1 1 692 2.10 0.00 0 27 100 2 594.31934 1187.63140 3.96 34.02 2102 2102 MS2 12/18 Linfeng_20120515_BRCA1_3.raw High DLSQLQENLK Unambiguous 2 2 IPI00217357.2;IPI00939119.1 CID 1.0000 0.0000 1 1 644 2.11 0.00 0 36 100 2 594.31866 1187.63005 2.83 34.94 2298 2298 MS2 13/18 Linfeng_20120515_BRCA1_7.raw High VLVEATYNPNmPFK Unambiguous 2 2 IPI00217357.2;IPI00939119.1 M11(Oxidation) CID 1.0000 0.0000 1 1 540 2.17 0.00 0 12 100 2 819.91577 1638.82427 2.80 37.09 2508 2508 MS2 14/26 Linfeng_20120515_BRCA1_3.raw High IQTLPNQNQSQTQPLLK Unambiguous 2 2 IPI00217357.2;IPI00939119.1 CID 1.0000 0.0000 1 1 322 2.22 0.00 0 0 100 2 976.03754 1951.06780 3.60 31.45 2054 2054 MS2 17/32 Linfeng_20120515_BRCA1_5.raw High DLSQLQENLK Unambiguous 2 2 IPI00217357.2;IPI00939119.1 CID 1.0000 0.0000 1 1 674 2.41 0.00 0 29 100 2 594.31921 1187.63115 3.76 34.12 2170 2170 MS2 10/18 Linfeng_20120515_BRCA1_7.raw High VLVEATYNPNmPFK Unambiguous 2 2 IPI00217357.2;IPI00939119.1 M11(Oxidation) CID 1.0000 0.0000 1 1 521 2.45 0.00 0 5 100 2 819.91583 1638.82439 2.88 36.95 2568 2568 MS2 14/26 Linfeng_20120515_BRCA1_7.raw High DLSQLQENLK Unambiguous 2 2 IPI00217357.2;IPI00939119.1 CID 1.0000 0.0000 1 1 677 2.72 0.00 0 20 100 2 594.31921 1187.63115 3.76 34.12 2115 2115 MS2 14/18 Linfeng_20120515_BRCA1_3.raw High PFQLGNYcNFYVmHR Unambiguous 2 2 IPI00217357.2;IPI00939119.1 C8(Carbamidomethyl); M13(Oxidation) CID 1.0000 0.0000 1 1 229 2.76 0.00 0 19 100 3 654.63080 1961.87784 -0.38 45.88 3673 3673 MS2 16/56 Linfeng_20120515_BRCA1_4.raw High PFQLGNYcNFYVmHR Unambiguous 2 2 IPI00217357.2;IPI00939119.1 C8(Carbamidomethyl); M13(Oxidation) CID 1.0000 0.0000 1 1 227 2.81 0.00 0 0 100 3 654.63098 1961.87839 -0.10 45.79 3531 3531 MS2 19/56 Linfeng_20120515_BRCA1_3.raw High PFQLGNYcNFYVmHR Unambiguous 2 2 IPI00217357.2;IPI00939119.1 C8(Carbamidomethyl); M13(Oxidation) CID 1.0000 0.0000 1 1 227 2.85 0.00 0 11 100 3 654.63092 1961.87821 -0.19 44.82 4360 4360 MS2 21/56 Linfeng_20120515_BRCA1_5.raw High VLVEATYNPNmPFK Unambiguous 2 2 IPI00217357.2;IPI00939119.1 M11(Oxidation) CID 1.0000 0.0000 1 1 562 2.93 0.00 0 9 100 2 819.91534 1638.82341 2.28 36.90 3189 3189 MS2 14/26 Linfeng_20120515_BRCA1_5.raw High FSLDcPScDmmELR Unambiguous 2 2 IPI00217357.2;IPI00939119.1 C5(Carbamidomethyl); C8(Carbamidomethyl); M10(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 26 3.13 0.00 0 17 100 2 896.85541 1792.70354 1.42 35.57 2932 2932 MS2 15/26 Linfeng_20120515_BRCA1_5.raw High NLSTVmDEIHTVLK Unambiguous 2 2 IPI00217357.2;IPI00939119.1 M6(Oxidation) CID 1.0000 0.0000 1 1 588 3.18 0.00 0 36 100 2 808.42145 1615.83562 -0.27 48.54 4181 4181 MS2 17/26 Linfeng_20120515_BRCA1_3.raw IPI00376215.2 Isoform 2 of DNA-dependent protein kinase catalytic subunit 1.81 1 0 6 11 0.00 27.62 1.81 6 11 4097 465.2 7.17 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High SIGEYDVLR Unambiguous 3 3 IPI00296337.2;IPI00376215.2;IPI00786995.1 CID 1.0000 0.0000 1 1 456 2.00 0.00 0 34 100 2 526.27618 1051.54509 3.04 35.02 2249 2249 MS2 11/16 Linfeng_20120515_BRCA1_3.raw High DQNILLGTTYR Unambiguous 3 3 IPI00296337.2;IPI00376215.2;IPI00786995.1 CID 1.0000 0.0000 1 1 570 2.16 0.00 0 5 100 2 647.34412 1293.68096 0.91 37.16 2362 2362 MS2 13/20 Linfeng_20120515_BRCA1_2.raw Medium VLEQLIVAHFPmQSR Unambiguous 3 3 IPI00296337.2;IPI00376215.2;IPI00786995.1 M12(Oxidation) CID 1.0000 0.0000 1 1 477 2.33 0.00 0 2 100 3 595.32263 1783.95334 0.51 48.61 4198 4198 MS2 18/56 Linfeng_20120515_BRCA1_3.raw High LLALNSLYSPK Unambiguous 3 3 IPI00296337.2;IPI00376215.2;IPI00786995.1 CID 1.0000 0.0000 1 1 295 2.34 0.00 0 59 100 2 609.85815 1218.70903 -0.21 45.89 3676 3676 MS2 12/20 Linfeng_20120515_BRCA1_4.raw High LLALNSLYSPK Unambiguous 3 3 IPI00296337.2;IPI00376215.2;IPI00786995.1 CID 1.0000 0.0000 1 1 299 2.35 0.00 0 60 100 2 609.85809 1218.70891 -0.31 45.78 3529 3529 MS2 11/20 Linfeng_20120515_BRCA1_3.raw High LLALNSLYSPK Unambiguous 3 3 IPI00296337.2;IPI00376215.2;IPI00786995.1 CID 1.0000 0.0000 1 1 296 2.36 0.00 0 47 100 2 609.85852 1218.70976 0.39 45.92 3560 3560 MS2 11/20 Linfeng_20120515_BRCA1_3.raw High LLALNSLYSPK Unambiguous 3 3 IPI00296337.2;IPI00376215.2;IPI00786995.1 CID 1.0000 0.0000 1 1 298 2.47 0.00 0 30 100 2 609.85876 1218.71025 0.79 46.00 3578 3578 MS2 13/20 Linfeng_20120515_BRCA1_3.raw High mSTSPEAFLALR Unambiguous 3 3 IPI00296337.2;IPI00376215.2;IPI00786995.1 M1(Oxidation) CID 1.0000 0.0000 1 1 455 2.60 0.00 0 10 100 2 669.84003 1338.67278 0.37 45.51 3465 3465 MS2 13/22 Linfeng_20120515_BRCA1_3.raw High VLEQLIVAHFPmQSR Unambiguous 3 3 IPI00296337.2;IPI00376215.2;IPI00786995.1 M12(Oxidation) CID 1.0000 0.0000 1 1 471 2.92 0.00 0 13 100 3 595.32208 1783.95169 -0.42 48.56 4534 4534 MS2 23/56 Linfeng_20120515_BRCA1_1.raw High mSTSPEAFLALR Unambiguous 3 3 IPI00296337.2;IPI00376215.2;IPI00786995.1 M1(Oxidation) CID 1.0000 0.0000 1 1 459 2.97 0.00 0 11 100 2 669.84009 1338.67290 0.46 45.33 3422 3422 MS2 15/22 Linfeng_20120515_BRCA1_3.raw High TVSLLDENNVSSYLSK Unambiguous 2 2 IPI00296337.2;IPI00376215.2 CID 1.0000 0.0000 1 1 510 3.12 0.00 0 46 100 2 884.95270 1768.89812 0.98 46.14 3611 3611 MS2 13/30 Linfeng_20120515_BRCA1_3.raw IPI00939595.1 Isoform 2 of Heat shock cognate 71 kDa protein 10.75 1 0 5 10 0.00 30.35 10.75 5 10 493 53.5 5.86 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High DAGTIAGLNVLR Unambiguous 4 4 IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00910870.1 CID 1.0000 0.0000 1 1 546 2.22 0.00 0 33 100 2 600.34082 1199.67436 0.03 43.37 3116 3116 MS2 12/22 Linfeng_20120515_BRCA1_4.raw High TTPSYVAFTDTER Unambiguous 10 10 IPI00304925.5;IPI00007702.1;IPI00339269.1;IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00845339.1;IPI00910870.1;IPI00911039.1;IPI00941328.1 CID 1.0000 0.0000 1 1 372 2.36 0.00 0 0 100 2 744.35620 1487.70513 2.56 33.88 2120 2120 MS2 16/24 Linfeng_20120515_BRCA1_4.raw High FEELNADLFR Unambiguous 4 4 IPI00007702.1;IPI00003865.1;IPI00939595.1;IPI00037070.3 CID 1.0000 0.0000 1 1 478 2.61 0.00 0 17 100 2 627.31256 1253.61785 1.36 46.79 3890 3890 MS2 13/18 Linfeng_20120515_BRCA1_4.raw High ARFEELNADLFR Unambiguous 4 4 IPI00007702.1;IPI00003865.1;IPI00939595.1;IPI00037070.3 CID 1.0000 0.0000 1 1 565 2.68 0.00 1 18 100 3 494.25662 1480.75531 0.63 48.01 4179 4179 MS2 20/44 Linfeng_20120515_BRCA1_4.raw High TTPSYVAFTDTER Unambiguous 10 10 IPI00304925.5;IPI00007702.1;IPI00339269.1;IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00845339.1;IPI00910870.1;IPI00911039.1;IPI00941328.1 CID 1.0000 0.0000 1 1 332 2.70 0.00 0 21 100 2 744.35712 1487.70696 3.79 34.89 2274 2274 MS2 16/24 Linfeng_20120515_BRCA1_4.raw High ARFEELNADLFR Unambiguous 4 4 IPI00007702.1;IPI00003865.1;IPI00939595.1;IPI00037070.3 CID 1.0000 0.0000 1 1 574 2.77 0.00 1 2 100 3 494.25644 1480.75476 0.26 48.46 4289 4289 MS2 20/44 Linfeng_20120515_BRCA1_4.raw High IINEPTAAAIAYGLDK Unambiguous 5 5 IPI00007702.1;IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00910870.1 CID 1.0000 0.0000 1 1 500 3.34 0.00 0 14 100 2 830.45135 1659.89543 0.09 45.10 3488 3488 MS2 19/30 Linfeng_20120515_BRCA1_4.raw High IINEPTAAAIAYGLDK Unambiguous 5 5 IPI00007702.1;IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00910870.1 CID 1.0000 0.0000 1 1 584 3.73 0.00 0 47 100 3 553.96954 1659.89408 -0.73 45.28 3532 3532 MS2 28/60 Linfeng_20120515_BRCA1_4.raw High IINEPTAAAIAYGLDK Unambiguous 5 5 IPI00007702.1;IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00910870.1 CID 1.0000 0.0000 1 1 515 3.86 0.00 0 10 100 2 830.45166 1659.89604 0.45 45.49 3580 3580 MS2 21/30 Linfeng_20120515_BRCA1_4.raw High IINEPTAAAIAYGLDK Unambiguous 5 5 IPI00007702.1;IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00910870.1 CID 1.0000 0.0000 1 1 443 4.08 0.00 0 8 100 2 830.45184 1659.89641 0.67 45.39 3558 3558 MS2 21/30 Linfeng_20120515_BRCA1_4.raw IPI00477179.1 Isoform 2 of Nucleolar RNA helicase 2 6.85 1 0 4 9 11.37 5.31 3 5 10.27 5.17 3 4 715 79.6 9.38 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High EMNGETREKSPK Unambiguous 2 2 IPI00015953.3;IPI00477179.1 CID 1.0000 0.0000 1 1 423 2.01 0.00 2 68 100 2 703.34052 1405.67375 -0.23 45.59 4077 4077 MS2 10/22 Linfeng_20120514_rIgG_1.raw High EGAFSNFPISEETIK Unambiguous 2 2 IPI00015953.3;IPI00477179.1 CID 1.0000 0.0000 1 1 516 2.16 0.00 0 21 100 2 834.90936 1668.81145 -0.10 46.30 3784 3784 MS2 10/28 Linfeng_20120514_rIgG_4.raw High APQVLVLAPTR Unambiguous 2 2 IPI00015953.3;IPI00477179.1 CID 1.0000 0.0000 1 1 81 2.18 0.00 0 57 100 2 582.86053 1164.71379 3.27 36.51 2437 2437 MS2 12/20 Linfeng_20120515_BRCA1_3.raw High EGAFSNFPISEETIK Unambiguous 2 2 IPI00015953.3;IPI00477179.1 CID 1.0000 0.0000 1 1 488 2.26 0.00 0 51 100 2 834.90997 1668.81267 0.63 45.41 3576 3576 MS2 14/28 Linfeng_20120514_rIgG_4.raw High STYEQVDLIGK Unambiguous 2 2 IPI00015953.3;IPI00477179.1 CID 1.0000 0.0000 1 1 549 2.32 0.00 0 24 100 2 626.82605 1252.64482 2.25 32.35 1896 1896 MS2 12/20 Linfeng_20120515_BRCA1_3.raw High EGAFSNFPISEETIK Unambiguous 2 2 IPI00015953.3;IPI00477179.1 CID 1.0000 0.0000 1 1 463 2.32 0.00 0 32 100 2 834.90936 1668.81145 -0.10 45.76 3658 3658 MS2 14/28 Linfeng_20120514_rIgG_4.raw High APQVLVLAPTR Unambiguous 2 2 IPI00015953.3;IPI00477179.1 CID 1.0000 0.0000 1 1 80 2.63 0.00 0 30 100 2 582.86029 1164.71330 2.85 36.32 2433 2433 MS2 14/20 Linfeng_20120514_rIgG_4.raw High EGAFSNFPISEETIK Unambiguous 2 2 IPI00015953.3;IPI00477179.1 CID 1.0000 0.0000 1 1 491 2.87 0.00 0 31 100 2 834.91052 1668.81377 1.29 45.53 3470 3470 MS2 10/28 Linfeng_20120515_BRCA1_3.raw High EGAFSNFPISEETIK Unambiguous 2 2 IPI00015953.3;IPI00477179.1 CID 1.0000 0.0000 1 1 490 2.90 0.00 0 38 100 2 834.91071 1668.81413 1.51 46.01 3582 3582 MS2 13/28 Linfeng_20120515_BRCA1_3.raw IPI00797730.1 Isoform 2 of Zinc finger protein Eos 12.87 1 0 4 11 34.57 12.87 4 11 544 59.6 6.79 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File Medium VAGVVSLPQGPPPQPPPTIVVGR Unambiguous 2 2 IPI00064241.4;IPI00797730.1 CID 1.0000 0.0000 1 1 120 2.31 0.00 0 10 100 3 754.76855 2262.29111 -2.60 44.07 4180 4180 MS2 20/88 Linfeng_20120515_BRCA1_5.raw High VAGVVSLPQGPPPQPPPTIVVGR Unambiguous 2 2 IPI00064241.4;IPI00797730.1 CID 1.0000 0.0000 1 1 121 2.51 0.00 0 57 100 3 754.76880 2262.29184 -2.28 44.44 3329 3329 MS2 22/88 Linfeng_20120515_BRCA1_4.raw High VAGVVSLPQGPPPQPPPTIVVGR Unambiguous 2 2 IPI00064241.4;IPI00797730.1 CID 1.0000 0.0000 1 1 126 2.81 0.00 0 36 100 3 754.76819 2262.29001 -3.08 43.86 4130 4130 MS2 25/88 Linfeng_20120515_BRCA1_5.raw High VAGVVSLPQGPPPQPPPTIVVGR Unambiguous 2 2 IPI00064241.4;IPI00797730.1 CID 1.0000 0.0000 1 1 118 2.82 0.00 0 26 100 3 754.76959 2262.29422 -1.22 43.85 3190 3190 MS2 28/88 Linfeng_20120515_BRCA1_4.raw High VAGVVSLPQGPPPQPPPTIVVGR Unambiguous 2 2 IPI00064241.4;IPI00797730.1 CID 1.0000 0.0000 1 1 121 2.89 0.00 0 32 100 3 754.76880 2262.29184 -2.28 44.11 4189 4189 MS2 24/88 Linfeng_20120515_BRCA1_5.raw High VAGVVSLPQGPPPQPPPTIVVGR Unambiguous 2 2 IPI00064241.4;IPI00797730.1 CID 1.0000 0.0000 1 1 123 2.99 0.00 0 47 100 3 754.76910 2262.29276 -1.87 43.79 4113 4113 MS2 24/88 Linfeng_20120515_BRCA1_5.raw High DVELVAHHSLEPGFGSSLAFVGAEHLRPLR Unambiguous 2 2 IPI00064241.4;IPI00797730.1 CID 1.0000 0.0000 1 1 319 3.10 0.00 1 77 74 5 648.94440 3240.69288 0.45 48.67 5321 5321 MS2 43/232 Linfeng_20120515_BRCA1_5.raw High VAGVVSLPQGPPPQPPPTIVVGR Unambiguous 2 2 IPI00064241.4;IPI00797730.1 CID 1.0000 0.0000 1 1 120 3.28 0.00 0 49 100 3 754.76837 2262.29056 -2.84 44.51 3346 3346 MS2 27/88 Linfeng_20120515_BRCA1_4.raw High FSLSDLPYDVNSGGYEK Unambiguous 2 2 IPI00064241.4;IPI00797730.1 CID 1.0000 0.0000 1 1 270 3.47 0.00 0 35 100 2 945.94189 1890.87651 0.45 48.26 4240 4240 MS2 18/32 Linfeng_20120515_BRCA1_4.raw High DVELVAHHSLEPGFGSSLAFVGAEHLR Unambiguous 2 2 IPI00064241.4;IPI00797730.1 CID 1.0000 0.0000 1 1 455 3.62 0.00 0 29 100 4 719.36804 2874.45034 -1.08 48.61 4328 4328 MS2 51/156 Linfeng_20120515_BRCA1_4.raw High DVELVAHHSLEPGFGSSLAFVGAEHLR Unambiguous 2 2 IPI00064241.4;IPI00797730.1 CID 1.0000 0.0000 1 1 451 4.76 0.00 0 16 20 4 719.36884 2874.45351 0.02 48.65 5316 5316 MS2 45/156 Linfeng_20120515_BRCA1_5.raw IPI00171196.2 "Isoform 3 of Keratin, type I cytoskeletal 13" 8.10 1 0 3 17 40.55 8.10 3 17 0.00 420 45.8 4.88 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High QSVEADINGLR Unambiguous 3 3 IPI00009865.4;IPI00009866.7;IPI00171196.2 CID 1.0000 0.0000 1 1 470 2.00 0.00 0 22 100 2 601.31342 1201.61955 1.96 32.16 2087 2087 MS2 11/20 Linfeng_20120514_rIgG_8.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 512 2.06 0.00 0 5 100 2 651.33282 1301.65837 -0.03 25.69 1470 1470 MS2 11/22 Linfeng_20120514_rIgG_3.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 512 2.17 0.00 0 4 100 2 651.33337 1301.65947 0.81 27.49 1653 1653 MS2 15/22 Linfeng_20120514_rIgG_2.raw High QSVEADINGLR Unambiguous 3 3 IPI00009865.4;IPI00009866.7;IPI00171196.2 CID 1.0000 0.0000 1 1 509 2.19 0.00 0 31 100 2 601.31329 1201.61931 1.76 32.50 2114 2114 MS2 11/20 Linfeng_20120514_rIgG_10.raw High QSVEADINGLR Unambiguous 3 3 IPI00009865.4;IPI00009866.7;IPI00171196.2 CID 1.0000 0.0000 1 1 484 2.24 0.00 0 13 100 2 601.31317 1201.61907 1.55 31.85 2175 2175 MS2 12/20 Linfeng_20120514_rIgG_2.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 512 2.26 0.00 0 6 100 2 651.33344 1301.65959 0.91 27.53 1657 1657 MS2 13/22 Linfeng_20120514_rIgG_2.raw High QSVEADINGLR Unambiguous 3 3 IPI00009865.4;IPI00009866.7;IPI00171196.2 CID 1.0000 0.0000 1 1 484 2.26 0.00 0 14 100 2 601.31323 1201.61919 1.65 32.35 2107 2107 MS2 13/20 Linfeng_20120514_rIgG_8.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 538 2.27 0.00 0 4 100 2 651.33398 1301.66069 1.75 27.68 1655 1655 MS2 16/22 Linfeng_20120514_rIgG_3.raw High QSVEADINGLR Unambiguous 3 3 IPI00009865.4;IPI00009866.7;IPI00171196.2 CID 1.0000 0.0000 1 1 519 2.30 0.00 0 26 100 2 601.31329 1201.61931 1.76 32.67 2141 2141 MS2 13/20 Linfeng_20120514_rIgG_10.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 546 2.42 0.00 0 7 100 2 651.33398 1301.66069 1.75 27.72 1661 1661 MS2 16/22 Linfeng_20120514_rIgG_3.raw High TRLEQEIATYR Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 589 2.42 0.00 1 8 100 2 690.36853 1379.72978 1.44 35.74 2658 2658 MS2 12/20 Linfeng_20120514_rIgG_3.raw High TRLEQEIATYR Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 500 2.43 0.00 1 0 100 2 690.36963 1379.73198 3.03 36.40 2702 2702 MS2 11/20 Linfeng_20120514_rIgG_1.raw High QSVEADINGLR Unambiguous 3 3 IPI00009865.4;IPI00009866.7;IPI00171196.2 CID 1.0000 0.0000 1 1 538 2.51 0.00 0 13 100 2 601.31256 1201.61785 0.54 31.89 2182 2182 MS2 12/20 Linfeng_20120514_rIgG_2.raw High QSVEADINGLR Unambiguous 3 3 IPI00009865.4;IPI00009866.7;IPI00171196.2 CID 1.0000 0.0000 1 1 460 2.54 0.00 0 15 100 2 601.31348 1201.61968 2.06 32.50 2123 2123 MS2 14/20 Linfeng_20120514_rIgG_8.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 547 2.56 0.00 0 6 100 2 651.33234 1301.65740 -0.78 25.32 1452 1452 MS2 15/22 Linfeng_20120514_rIgG_2.raw High QSVEADINGLR Unambiguous 3 3 IPI00009865.4;IPI00009866.7;IPI00171196.2 CID 1.0000 0.0000 1 1 517 2.88 0.00 0 26 100 2 601.31378 1201.62029 2.57 32.60 2129 2129 MS2 15/20 Linfeng_20120514_rIgG_10.raw High TRLEQEIATYR Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 510 3.04 0.00 1 4 100 2 690.36951 1379.73174 2.85 36.20 2681 2681 MS2 15/20 Linfeng_20120514_rIgG_1.raw IPI00909467.1 Isoform 4 of Breast cancer type 1 susceptibility protein 3.36 1 0 5 8 22.66 3.36 5 8 1846 205.7 5.45 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High IPPLFPIK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 113 2.03 0.00 0 0 27 2 462.79968 924.59209 0.36 48.97 4299 4299 MS2 12/14 Linfeng_20120515_BRCA1_3.raw High LGVLQPEVYK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 508 2.36 0.00 0 44 100 2 573.33374 1145.66020 3.21 35.79 2393 2393 MS2 11/18 Linfeng_20120515_BRCA1_4.raw High LGVLQPEVYK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 437 2.42 0.00 0 9 100 2 573.33313 1145.65898 2.14 36.18 2264 2264 MS2 11/18 Linfeng_20120515_BRCA1_2.raw Medium HIHALELVVSR Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 336 2.44 0.00 0 30 100 3 425.25137 1273.73957 1.56 47.75 3993 3993 MS2 23/40 Linfeng_20120515_BRCA1_3.raw High NESNIKPVQTVNITAGFPVVGQK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 301 3.01 0.00 1 18 100 3 814.11078 2440.31778 -0.73 44.51 3226 3226 MS2 25/88 Linfeng_20120515_BRCA1_3.raw High FSQLVEELLK Unambiguous 6 6 IPI00218982.1;IPI00909467.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1 CID 1.0000 0.0000 1 1 472 3.32 0.00 0 2 14 2 603.34302 1205.67876 0.90 48.99 4307 4307 MS2 16/18 Linfeng_20120515_BRCA1_3.raw High NESNIKPVQTVNITAGFPVVGQK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 308 3.52 0.00 1 8 100 3 814.11060 2440.31723 -0.95 44.79 3294 3294 MS2 24/88 Linfeng_20120515_BRCA1_3.raw High NESNIKPVQTVNITAGFPVVGQK Unambiguous 8 8 IPI00218982.1;IPI00909467.1;IPI00946009.1;IPI00930098.1;IPI00297234.1;IPI00930496.1;IPI00945705.1;IPI00027273.3 CID 1.0000 0.0000 1 1 256 3.56 0.00 1 28 100 3 814.11230 2440.32236 1.15 45.07 3360 3360 MS2 22/88 Linfeng_20120515_BRCA1_3.raw IPI00759596.1 Isoform 4 of Heterogeneous nuclear ribonucleoproteins C1/C2 26.40 1 0 5 36 73.03 26.40 5 21 47.55 26.40 5 15 250 27.8 4.69 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High SDVEAIFSK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 492 2.15 0.00 0 9 100 2 498.25745 995.50762 3.18 34.56 2156 2156 MS2 12/16 Linfeng_20120515_BRCA1_6.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 488 2.20 0.00 0 46 100 2 665.33282 1329.65837 -0.22 45.71 4191 4191 MS2 12/20 Linfeng_20120514_rIgG_8.raw Medium mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 511 2.33 0.00 0 43 100 3 566.97479 1698.90982 0.14 46.04 3527 3527 MS2 17/60 Linfeng_20120515_BRCA1_6.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 471 2.34 0.00 0 41 100 2 665.33405 1329.66081 1.62 45.93 4237 4237 MS2 15/20 Linfeng_20120515_BRCA1_10.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 507 2.34 0.00 0 7 100 2 665.33362 1329.65996 0.98 46.34 4337 4337 MS2 15/20 Linfeng_20120515_BRCA1_10.raw High SDVEAIFSK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 488 2.39 0.00 0 4 100 2 498.25674 995.50621 1.77 34.00 2125 2125 MS2 14/16 Linfeng_20120514_rIgG_7.raw High SDVEAIFSK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 496 2.41 0.00 0 10 100 2 498.25702 995.50676 2.32 35.00 2271 2271 MS2 13/16 Linfeng_20120514_rIgG_7.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 464 2.44 0.00 0 20 100 2 665.33411 1329.66094 1.71 45.75 3490 3490 MS2 15/20 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 550 2.52 0.00 0 45 100 3 566.97455 1698.90909 -0.29 45.43 3385 3385 MS2 25/60 Linfeng_20120515_BRCA1_6.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 468 2.58 0.00 0 14 100 2 665.33289 1329.65849 -0.13 46.58 3905 3905 MS2 14/20 Linfeng_20120514_rIgG_10.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 467 2.66 0.00 0 21 100 2 665.33270 1329.65813 -0.40 45.84 3580 3580 MS2 15/20 Linfeng_20120515_BRCA1_7.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 492 2.95 0.00 0 0 100 2 665.33246 1329.65764 -0.77 46.99 4499 4499 MS2 14/20 Linfeng_20120514_rIgG_8.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 456 3.05 0.00 0 0 59 2 665.33344 1329.65959 0.70 46.53 3643 3643 MS2 17/20 Linfeng_20120514_rIgG_7.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 451 3.08 0.00 0 0 100 2 665.33441 1329.66155 2.17 46.83 3813 3813 MS2 17/20 Linfeng_20120515_BRCA1_7.raw High VFIGNLNTLVVK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 105 3.13 0.00 0 2 5 2 658.90015 1316.79302 -0.53 48.93 4343 4343 MS2 19/22 Linfeng_20120515_BRCA1_7.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 479 3.14 0.00 0 36 100 2 665.33344 1329.65959 0.70 46.06 3782 3782 MS2 12/20 Linfeng_20120514_rIgG_10.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 476 3.14 0.00 0 18 100 2 665.33319 1329.65911 0.33 46.69 4428 4428 MS2 15/20 Linfeng_20120514_rIgG_8.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 500 3.23 0.00 0 10 100 2 665.33215 1329.65703 -1.23 47.75 3923 3923 MS2 17/20 Linfeng_20120514_rIgG_7.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 460 3.28 0.00 0 1 100 2 665.33350 1329.65972 0.79 46.73 3686 3686 MS2 17/20 Linfeng_20120514_rIgG_7.raw High VFIGNLNTLVVK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 140 3.30 0.00 0 10 16 2 658.90002 1316.79277 -0.71 48.92 4234 4234 MS2 20/22 Linfeng_20120515_BRCA1_6.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 479 3.42 0.00 0 1 94 2 665.33325 1329.65923 0.43 46.65 3669 3669 MS2 17/20 Linfeng_20120514_rIgG_7.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 465 3.42 0.00 0 80 100 2 665.33264 1329.65801 -0.49 45.80 3471 3471 MS2 15/20 Linfeng_20120515_BRCA1_6.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 511 3.52 0.00 0 46 100 3 566.97467 1698.90946 -0.08 46.14 3551 3551 MS2 23/60 Linfeng_20120515_BRCA1_6.raw High SAAEmYGSSFDLDYDFQR Unambiguous 3 3 IPI00216592.2;IPI00759596.1;IPI00909232.1 M5(Oxidation) CID 1.0000 0.0000 1 1 62 3.52 0.00 0 19 100 2 1059.44226 2117.87724 0.70 45.59 3462 3462 MS2 17/34 Linfeng_20120514_rIgG_7.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 473 3.67 0.00 0 2 100 2 665.33356 1329.65984 0.88 46.80 3707 3707 MS2 17/20 Linfeng_20120515_BRCA1_6.raw High VFIGNLNTLVVK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 142 3.77 0.00 0 1 12 2 658.89978 1316.79228 -1.08 48.92 4212 4212 MS2 20/22 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 492 4.05 0.00 0 39 100 2 849.95941 1698.91155 1.15 46.68 3675 3675 MS2 19/30 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 483 4.24 0.00 0 44 100 2 849.95862 1698.90996 0.22 46.63 3668 3668 MS2 18/30 Linfeng_20120515_BRCA1_6.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 468 4.29 0.00 0 30 100 2 849.95850 1698.90972 0.08 46.43 3622 3622 MS2 19/30 Linfeng_20120514_rIgG_7.raw High SAAEmYGSSFDLDYDFQR Unambiguous 3 3 IPI00216592.2;IPI00759596.1;IPI00909232.1 M5(Oxidation) CID 1.0000 0.0000 1 1 60 4.38 0.00 0 11 100 2 1059.44299 2117.87871 1.39 45.52 3404 3404 MS2 19/34 Linfeng_20120515_BRCA1_6.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 533 4.43 0.00 0 46 100 2 849.95782 1698.90837 -0.71 46.78 3696 3696 MS2 19/30 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 497 4.43 0.00 0 44 100 2 849.95728 1698.90727 -1.36 47.32 3821 3821 MS2 19/30 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 552 4.47 0.00 0 53 100 2 849.95947 1698.91167 1.23 46.64 3770 3770 MS2 19/30 Linfeng_20120515_BRCA1_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 476 4.66 0.00 0 34 100 2 849.95923 1698.91118 0.94 46.62 3662 3662 MS2 20/30 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 493 4.74 0.00 0 27 100 2 849.95905 1698.91081 0.72 45.63 3468 3468 MS2 23/30 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 483 4.91 0.00 0 33 100 2 849.95905 1698.91081 0.72 45.49 3441 3441 MS2 21/30 Linfeng_20120514_rIgG_7.raw IPI00216592.2 Isoform C1 of Heterogeneous nuclear ribonucleoproteins C1/C2 22.53 1 0 5 36 73.03 22.53 5 21 47.55 22.53 5 15 293 32.3 5.08 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High SDVEAIFSK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 492 2.15 0.00 0 9 100 2 498.25745 995.50762 3.18 34.56 2156 2156 MS2 12/16 Linfeng_20120515_BRCA1_6.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 488 2.20 0.00 0 46 100 2 665.33282 1329.65837 -0.22 45.71 4191 4191 MS2 12/20 Linfeng_20120514_rIgG_8.raw Medium mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 511 2.33 0.00 0 43 100 3 566.97479 1698.90982 0.14 46.04 3527 3527 MS2 17/60 Linfeng_20120515_BRCA1_6.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 471 2.34 0.00 0 41 100 2 665.33405 1329.66081 1.62 45.93 4237 4237 MS2 15/20 Linfeng_20120515_BRCA1_10.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 507 2.34 0.00 0 7 100 2 665.33362 1329.65996 0.98 46.34 4337 4337 MS2 15/20 Linfeng_20120515_BRCA1_10.raw High SDVEAIFSK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 488 2.39 0.00 0 4 100 2 498.25674 995.50621 1.77 34.00 2125 2125 MS2 14/16 Linfeng_20120514_rIgG_7.raw High SDVEAIFSK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 496 2.41 0.00 0 10 100 2 498.25702 995.50676 2.32 35.00 2271 2271 MS2 13/16 Linfeng_20120514_rIgG_7.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 464 2.44 0.00 0 20 100 2 665.33411 1329.66094 1.71 45.75 3490 3490 MS2 15/20 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 550 2.52 0.00 0 45 100 3 566.97455 1698.90909 -0.29 45.43 3385 3385 MS2 25/60 Linfeng_20120515_BRCA1_6.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 468 2.58 0.00 0 14 100 2 665.33289 1329.65849 -0.13 46.58 3905 3905 MS2 14/20 Linfeng_20120514_rIgG_10.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 467 2.66 0.00 0 21 100 2 665.33270 1329.65813 -0.40 45.84 3580 3580 MS2 15/20 Linfeng_20120515_BRCA1_7.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 492 2.95 0.00 0 0 100 2 665.33246 1329.65764 -0.77 46.99 4499 4499 MS2 14/20 Linfeng_20120514_rIgG_8.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 456 3.05 0.00 0 0 59 2 665.33344 1329.65959 0.70 46.53 3643 3643 MS2 17/20 Linfeng_20120514_rIgG_7.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 451 3.08 0.00 0 0 100 2 665.33441 1329.66155 2.17 46.83 3813 3813 MS2 17/20 Linfeng_20120515_BRCA1_7.raw High VFIGNLNTLVVK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 105 3.13 0.00 0 2 5 2 658.90015 1316.79302 -0.53 48.93 4343 4343 MS2 19/22 Linfeng_20120515_BRCA1_7.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 479 3.14 0.00 0 36 100 2 665.33344 1329.65959 0.70 46.06 3782 3782 MS2 12/20 Linfeng_20120514_rIgG_10.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 476 3.14 0.00 0 18 100 2 665.33319 1329.65911 0.33 46.69 4428 4428 MS2 15/20 Linfeng_20120514_rIgG_8.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 500 3.23 0.00 0 10 100 2 665.33215 1329.65703 -1.23 47.75 3923 3923 MS2 17/20 Linfeng_20120514_rIgG_7.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 460 3.28 0.00 0 1 100 2 665.33350 1329.65972 0.79 46.73 3686 3686 MS2 17/20 Linfeng_20120514_rIgG_7.raw High VFIGNLNTLVVK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 140 3.30 0.00 0 10 16 2 658.90002 1316.79277 -0.71 48.92 4234 4234 MS2 20/22 Linfeng_20120515_BRCA1_6.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 479 3.42 0.00 0 1 94 2 665.33325 1329.65923 0.43 46.65 3669 3669 MS2 17/20 Linfeng_20120514_rIgG_7.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 465 3.42 0.00 0 80 100 2 665.33264 1329.65801 -0.49 45.80 3471 3471 MS2 15/20 Linfeng_20120515_BRCA1_6.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 511 3.52 0.00 0 46 100 3 566.97467 1698.90946 -0.08 46.14 3551 3551 MS2 23/60 Linfeng_20120515_BRCA1_6.raw High SAAEmYGSSFDLDYDFQR Unambiguous 3 3 IPI00216592.2;IPI00759596.1;IPI00909232.1 M5(Oxidation) CID 1.0000 0.0000 1 1 62 3.52 0.00 0 19 100 2 1059.44226 2117.87724 0.70 45.59 3462 3462 MS2 17/34 Linfeng_20120514_rIgG_7.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 473 3.67 0.00 0 2 100 2 665.33356 1329.65984 0.88 46.80 3707 3707 MS2 17/20 Linfeng_20120515_BRCA1_6.raw High VFIGNLNTLVVK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 142 3.77 0.00 0 1 12 2 658.89978 1316.79228 -1.08 48.92 4212 4212 MS2 20/22 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 492 4.05 0.00 0 39 100 2 849.95941 1698.91155 1.15 46.68 3675 3675 MS2 19/30 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 483 4.24 0.00 0 44 100 2 849.95862 1698.90996 0.22 46.63 3668 3668 MS2 18/30 Linfeng_20120515_BRCA1_6.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 468 4.29 0.00 0 30 100 2 849.95850 1698.90972 0.08 46.43 3622 3622 MS2 19/30 Linfeng_20120514_rIgG_7.raw High SAAEmYGSSFDLDYDFQR Unambiguous 3 3 IPI00216592.2;IPI00759596.1;IPI00909232.1 M5(Oxidation) CID 1.0000 0.0000 1 1 60 4.38 0.00 0 11 100 2 1059.44299 2117.87871 1.39 45.52 3404 3404 MS2 19/34 Linfeng_20120515_BRCA1_6.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 533 4.43 0.00 0 46 100 2 849.95782 1698.90837 -0.71 46.78 3696 3696 MS2 19/30 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 497 4.43 0.00 0 44 100 2 849.95728 1698.90727 -1.36 47.32 3821 3821 MS2 19/30 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 552 4.47 0.00 0 53 100 2 849.95947 1698.91167 1.23 46.64 3770 3770 MS2 19/30 Linfeng_20120515_BRCA1_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 476 4.66 0.00 0 34 100 2 849.95923 1698.91118 0.94 46.62 3662 3662 MS2 20/30 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 493 4.74 0.00 0 27 100 2 849.95905 1698.91081 0.72 45.63 3468 3468 MS2 23/30 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 483 4.91 0.00 0 33 100 2 849.95905 1698.91081 0.72 45.49 3441 3441 MS2 21/30 Linfeng_20120514_rIgG_7.raw IPI00477313.3 Isoform C2 of Heterogeneous nuclear ribonucleoproteins C1/C2 15.69 1 0 4 34 69.51 15.69 4 20 43.17 15.69 4 14 306 33.6 5.08 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High SDVEAIFSK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 492 2.15 0.00 0 9 100 2 498.25745 995.50762 3.18 34.56 2156 2156 MS2 12/16 Linfeng_20120515_BRCA1_6.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 488 2.20 0.00 0 46 100 2 665.33282 1329.65837 -0.22 45.71 4191 4191 MS2 12/20 Linfeng_20120514_rIgG_8.raw Medium mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 511 2.33 0.00 0 43 100 3 566.97479 1698.90982 0.14 46.04 3527 3527 MS2 17/60 Linfeng_20120515_BRCA1_6.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 471 2.34 0.00 0 41 100 2 665.33405 1329.66081 1.62 45.93 4237 4237 MS2 15/20 Linfeng_20120515_BRCA1_10.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 507 2.34 0.00 0 7 100 2 665.33362 1329.65996 0.98 46.34 4337 4337 MS2 15/20 Linfeng_20120515_BRCA1_10.raw High SDVEAIFSK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 488 2.39 0.00 0 4 100 2 498.25674 995.50621 1.77 34.00 2125 2125 MS2 14/16 Linfeng_20120514_rIgG_7.raw High SDVEAIFSK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 496 2.41 0.00 0 10 100 2 498.25702 995.50676 2.32 35.00 2271 2271 MS2 13/16 Linfeng_20120514_rIgG_7.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 464 2.44 0.00 0 20 100 2 665.33411 1329.66094 1.71 45.75 3490 3490 MS2 15/20 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 550 2.52 0.00 0 45 100 3 566.97455 1698.90909 -0.29 45.43 3385 3385 MS2 25/60 Linfeng_20120515_BRCA1_6.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 468 2.58 0.00 0 14 100 2 665.33289 1329.65849 -0.13 46.58 3905 3905 MS2 14/20 Linfeng_20120514_rIgG_10.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 467 2.66 0.00 0 21 100 2 665.33270 1329.65813 -0.40 45.84 3580 3580 MS2 15/20 Linfeng_20120515_BRCA1_7.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 492 2.95 0.00 0 0 100 2 665.33246 1329.65764 -0.77 46.99 4499 4499 MS2 14/20 Linfeng_20120514_rIgG_8.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 456 3.05 0.00 0 0 59 2 665.33344 1329.65959 0.70 46.53 3643 3643 MS2 17/20 Linfeng_20120514_rIgG_7.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 451 3.08 0.00 0 0 100 2 665.33441 1329.66155 2.17 46.83 3813 3813 MS2 17/20 Linfeng_20120515_BRCA1_7.raw High VFIGNLNTLVVK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 105 3.13 0.00 0 2 5 2 658.90015 1316.79302 -0.53 48.93 4343 4343 MS2 19/22 Linfeng_20120515_BRCA1_7.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 479 3.14 0.00 0 36 100 2 665.33344 1329.65959 0.70 46.06 3782 3782 MS2 12/20 Linfeng_20120514_rIgG_10.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 476 3.14 0.00 0 18 100 2 665.33319 1329.65911 0.33 46.69 4428 4428 MS2 15/20 Linfeng_20120514_rIgG_8.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 500 3.23 0.00 0 10 100 2 665.33215 1329.65703 -1.23 47.75 3923 3923 MS2 17/20 Linfeng_20120514_rIgG_7.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 460 3.28 0.00 0 1 100 2 665.33350 1329.65972 0.79 46.73 3686 3686 MS2 17/20 Linfeng_20120514_rIgG_7.raw High VFIGNLNTLVVK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 140 3.30 0.00 0 10 16 2 658.90002 1316.79277 -0.71 48.92 4234 4234 MS2 20/22 Linfeng_20120515_BRCA1_6.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 479 3.42 0.00 0 1 94 2 665.33325 1329.65923 0.43 46.65 3669 3669 MS2 17/20 Linfeng_20120514_rIgG_7.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 465 3.42 0.00 0 80 100 2 665.33264 1329.65801 -0.49 45.80 3471 3471 MS2 15/20 Linfeng_20120515_BRCA1_6.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 511 3.52 0.00 0 46 100 3 566.97467 1698.90946 -0.08 46.14 3551 3551 MS2 23/60 Linfeng_20120515_BRCA1_6.raw High GFAFVQYVNER Unambiguous 6 6 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 473 3.67 0.00 0 2 100 2 665.33356 1329.65984 0.88 46.80 3707 3707 MS2 17/20 Linfeng_20120515_BRCA1_6.raw High VFIGNLNTLVVK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 142 3.77 0.00 0 1 12 2 658.89978 1316.79228 -1.08 48.92 4212 4212 MS2 20/22 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 492 4.05 0.00 0 39 100 2 849.95941 1698.91155 1.15 46.68 3675 3675 MS2 19/30 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 483 4.24 0.00 0 44 100 2 849.95862 1698.90996 0.22 46.63 3668 3668 MS2 18/30 Linfeng_20120515_BRCA1_6.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 468 4.29 0.00 0 30 100 2 849.95850 1698.90972 0.08 46.43 3622 3622 MS2 19/30 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 533 4.43 0.00 0 46 100 2 849.95782 1698.90837 -0.71 46.78 3696 3696 MS2 19/30 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 497 4.43 0.00 0 44 100 2 849.95728 1698.90727 -1.36 47.32 3821 3821 MS2 19/30 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 552 4.47 0.00 0 53 100 2 849.95947 1698.91167 1.23 46.64 3770 3770 MS2 19/30 Linfeng_20120515_BRCA1_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 476 4.66 0.00 0 34 100 2 849.95923 1698.91118 0.94 46.62 3662 3662 MS2 20/30 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 493 4.74 0.00 0 27 100 2 849.95905 1698.91081 0.72 45.63 3468 3468 MS2 23/30 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 483 4.91 0.00 0 33 100 2 849.95905 1698.91081 0.72 45.49 3441 3441 MS2 21/30 Linfeng_20120514_rIgG_7.raw IPI00013933.2 Isoform DPI of Desmoplakin 3.41 1 0 6 10 26.76 3.41 6 10 0.00 2871 331.6 6.81 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High ALLQAILQTEDMLK Unambiguous 3 3 IPI00013933.2;IPI00217182.5;IPI00969616.1 CID 1.0000 0.0000 1 1 381 2.08 0.00 0 42 100 2 793.94580 1586.88432 1.28 55.44 5785 5785 MS2 13/26 Linfeng_20120514_rIgG_2.raw High AELIVQPELK Unambiguous 3 3 IPI00013933.2;IPI00217182.5;IPI00969616.1 CID 1.0000 0.0000 1 1 182 2.21 0.00 0 20 100 2 570.33801 1139.66875 1.44 36.04 2703 2703 MS2 11/18 Linfeng_20120514_rIgG_3.raw Medium TmIQSPSGVILQEAADVHAR Unambiguous 3 3 IPI00013933.2;IPI00217182.5;IPI00969616.1 M2(Oxidation) CID 1.0000 0.0000 1 1 606 2.36 0.00 0 32 100 3 713.70203 2139.09153 2.40 44.68 3859 3859 MS2 20/76 Linfeng_20120514_rIgG_1.raw High IEVLEEELR Unambiguous 3 3 IPI00013933.2;IPI00217182.5;IPI00969616.1 CID 1.0000 0.0000 1 1 679 2.50 0.00 0 54 100 2 565.30975 1129.61223 1.98 38.81 3225 3225 MS2 12/16 Linfeng_20120514_rIgG_2.raw Medium IGLVRPGTALELLEAQAATGFIVDPVSNLR Unambiguous 3 3 IPI00013933.2;IPI00217182.5;IPI00969616.1 CID 1.0000 0.0000 1 1 43 2.58 0.00 1 41 100 4 780.94519 3120.75893 5.51 55.47 5192 5192 MS2 35/174 Linfeng_20120514_rIgG_3.raw High ALLQAILQTEDMLK Unambiguous 3 3 IPI00013933.2;IPI00217182.5;IPI00969616.1 CID 1.0000 0.0000 1 1 386 2.67 0.00 0 53 100 2 793.94623 1586.88518 1.82 55.41 5179 5179 MS2 16/26 Linfeng_20120514_rIgG_3.raw High LLEAQIATGGIIDPK Unambiguous 3 3 IPI00013933.2;IPI00217182.5;IPI00969616.1 CID 1.0000 0.0000 1 1 246 2.69 0.00 0 16 100 2 769.94330 1538.87932 0.26 43.31 3505 3505 MS2 14/28 Linfeng_20120514_rIgG_3.raw High AELIVQPELK Unambiguous 3 3 IPI00013933.2;IPI00217182.5;IPI00969616.1 CID 1.0000 0.0000 1 1 186 2.85 0.00 0 31 100 2 570.33838 1139.66948 2.08 36.12 2716 2716 MS2 12/18 Linfeng_20120514_rIgG_3.raw High ALLQAILQTEDMLK Unambiguous 3 3 IPI00013933.2;IPI00217182.5;IPI00969616.1 CID 1.0000 0.0000 1 1 405 3.30 0.00 0 23 100 2 793.94666 1586.88603 2.36 55.41 5778 5778 MS2 16/26 Linfeng_20120514_rIgG_2.raw High LLEAQIATGGIIDPK Unambiguous 3 3 IPI00013933.2;IPI00217182.5;IPI00969616.1 CID 1.0000 0.0000 1 1 210 3.54 0.00 0 18 100 2 769.94452 1538.88176 1.85 43.32 3786 3786 MS2 17/28 Linfeng_20120514_rIgG_2.raw IPI00217182.5 Isoform DPII of Desmoplakin 4.31 1 0 6 10 26.76 4.31 6 10 0.00 2272 260.0 6.96 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High ALLQAILQTEDMLK Unambiguous 3 3 IPI00013933.2;IPI00217182.5;IPI00969616.1 CID 1.0000 0.0000 1 1 381 2.08 0.00 0 42 100 2 793.94580 1586.88432 1.28 55.44 5785 5785 MS2 13/26 Linfeng_20120514_rIgG_2.raw High AELIVQPELK Unambiguous 3 3 IPI00013933.2;IPI00217182.5;IPI00969616.1 CID 1.0000 0.0000 1 1 182 2.21 0.00 0 20 100 2 570.33801 1139.66875 1.44 36.04 2703 2703 MS2 11/18 Linfeng_20120514_rIgG_3.raw Medium TmIQSPSGVILQEAADVHAR Unambiguous 3 3 IPI00013933.2;IPI00217182.5;IPI00969616.1 M2(Oxidation) CID 1.0000 0.0000 1 1 606 2.36 0.00 0 32 100 3 713.70203 2139.09153 2.40 44.68 3859 3859 MS2 20/76 Linfeng_20120514_rIgG_1.raw High IEVLEEELR Unambiguous 3 3 IPI00013933.2;IPI00217182.5;IPI00969616.1 CID 1.0000 0.0000 1 1 679 2.50 0.00 0 54 100 2 565.30975 1129.61223 1.98 38.81 3225 3225 MS2 12/16 Linfeng_20120514_rIgG_2.raw Medium IGLVRPGTALELLEAQAATGFIVDPVSNLR Unambiguous 3 3 IPI00013933.2;IPI00217182.5;IPI00969616.1 CID 1.0000 0.0000 1 1 43 2.58 0.00 1 41 100 4 780.94519 3120.75893 5.51 55.47 5192 5192 MS2 35/174 Linfeng_20120514_rIgG_3.raw High ALLQAILQTEDMLK Unambiguous 3 3 IPI00013933.2;IPI00217182.5;IPI00969616.1 CID 1.0000 0.0000 1 1 386 2.67 0.00 0 53 100 2 793.94623 1586.88518 1.82 55.41 5179 5179 MS2 16/26 Linfeng_20120514_rIgG_3.raw High LLEAQIATGGIIDPK Unambiguous 3 3 IPI00013933.2;IPI00217182.5;IPI00969616.1 CID 1.0000 0.0000 1 1 246 2.69 0.00 0 16 100 2 769.94330 1538.87932 0.26 43.31 3505 3505 MS2 14/28 Linfeng_20120514_rIgG_3.raw High AELIVQPELK Unambiguous 3 3 IPI00013933.2;IPI00217182.5;IPI00969616.1 CID 1.0000 0.0000 1 1 186 2.85 0.00 0 31 100 2 570.33838 1139.66948 2.08 36.12 2716 2716 MS2 12/18 Linfeng_20120514_rIgG_3.raw High ALLQAILQTEDMLK Unambiguous 3 3 IPI00013933.2;IPI00217182.5;IPI00969616.1 CID 1.0000 0.0000 1 1 405 3.30 0.00 0 23 100 2 793.94666 1586.88603 2.36 55.41 5778 5778 MS2 16/26 Linfeng_20120514_rIgG_2.raw High LLEAQIATGGIIDPK Unambiguous 3 3 IPI00013933.2;IPI00217182.5;IPI00969616.1 CID 1.0000 0.0000 1 1 210 3.54 0.00 0 18 100 2 769.94452 1538.88176 1.85 43.32 3786 3786 MS2 17/28 Linfeng_20120514_rIgG_2.raw IPI00883857.2 Isoform Long of Heterogeneous nuclear ribonucleoprotein U 6.55 1 0 4 15 29.18 6.55 4 10 14.98 5.45 3 5 825 90.5 6.00 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High SSGPTSLFAVTVAPPGAR Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 CID 1.0000 0.0000 1 1 511 2.20 0.00 0 14 100 2 857.96124 1714.91521 1.67 47.07 3964 3964 MS2 15/34 Linfeng_20120514_rIgG_4.raw High mcLFAGFQR Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 M1(Oxidation); C2(Carbamidomethyl) CID 1.0000 0.0000 1 1 179 2.20 0.00 0 3 100 2 573.26532 1145.52336 0.22 42.25 3391 3391 MS2 9/16 Linfeng_20120514_rIgG_3.raw High YNILGTNTImDK Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 M10(Oxidation) CID 1.0000 0.0000 1 1 490 2.22 0.00 0 13 100 2 699.85278 1398.69829 3.50 35.29 2318 2318 MS2 16/22 Linfeng_20120514_rIgG_4.raw High YNILGTNTImDK Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 M10(Oxidation) CID 1.0000 0.0000 1 1 507 2.30 0.00 0 17 100 2 699.85236 1398.69744 2.89 35.37 2294 2294 MS2 13/22 Linfeng_20120515_BRCA1_3.raw High SSGPTSLFAVTVAPPGAR Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 CID 1.0000 0.0000 1 1 522 2.31 0.00 0 9 100 2 857.95978 1714.91228 -0.04 48.03 4364 4364 MS2 12/34 Linfeng_20120514_rIgG_3.raw High YNILGTNTImDK Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 M10(Oxidation) CID 1.0000 0.0000 1 1 504 2.37 0.00 0 9 100 2 699.85242 1398.69756 2.97 36.30 2430 2430 MS2 17/22 Linfeng_20120514_rIgG_4.raw High SSGPTSLFAVTVAPPGAR Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 CID 1.0000 0.0000 1 1 488 2.49 0.00 0 30 100 2 857.96118 1714.91509 1.60 47.58 4076 4076 MS2 12/34 Linfeng_20120515_BRCA1_4.raw High YNILGTNTImDK Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 M10(Oxidation) CID 1.0000 0.0000 1 1 503 2.77 0.00 0 8 100 2 699.85248 1398.69768 3.06 36.39 2421 2421 MS2 16/22 Linfeng_20120515_BRCA1_3.raw High SSGPTSLFAVTVAPPGAR Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 CID 1.0000 0.0000 1 1 546 2.78 0.00 0 19 100 2 857.96106 1714.91484 1.45 46.99 4133 4133 MS2 15/34 Linfeng_20120514_rIgG_3.raw High SSGPTSLFAVTVAPPGAR Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 CID 1.0000 0.0000 1 1 536 2.99 0.00 0 27 100 2 857.95972 1714.91216 -0.11 47.21 3863 3863 MS2 14/34 Linfeng_20120515_BRCA1_3.raw High NFILDQTNVSAAAQR Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 CID 1.0000 0.0000 1 1 608 3.29 0.00 0 3 100 2 824.42749 1647.84770 1.65 38.13 2639 2639 MS2 21/28 Linfeng_20120514_rIgG_4.raw High YNILGTNTImDK Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 M10(Oxidation) CID 1.0000 0.0000 1 1 482 3.36 0.00 0 2 100 2 699.85175 1398.69621 2.01 36.12 2714 2714 MS2 18/22 Linfeng_20120514_rIgG_3.raw High NFILDQTNVSAAAQR Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 CID 1.0000 0.0000 1 1 634 3.89 0.00 0 5 100 2 824.42761 1647.84795 1.80 37.96 2934 2934 MS2 22/28 Linfeng_20120514_rIgG_3.raw High NFILDQTNVSAAAQR Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 CID 1.0000 0.0000 1 1 646 4.42 0.00 0 38 100 2 824.42694 1647.84661 0.99 38.23 2625 2625 MS2 21/28 Linfeng_20120515_BRCA1_3.raw High NFILDQTNVSAAAQR Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 CID 1.0000 0.0000 1 1 625 4.56 0.00 0 6 100 2 824.42688 1647.84648 0.91 38.98 3062 3062 MS2 23/28 Linfeng_20120514_rIgG_3.raw IPI00479217.1 Isoform Short of Heterogeneous nuclear ribonucleoprotein U 6.70 1 0 4 15 29.18 6.70 4 10 14.98 5.58 3 5 806 88.9 5.78 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High SSGPTSLFAVTVAPPGAR Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 CID 1.0000 0.0000 1 1 511 2.20 0.00 0 14 100 2 857.96124 1714.91521 1.67 47.07 3964 3964 MS2 15/34 Linfeng_20120514_rIgG_4.raw High mcLFAGFQR Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 M1(Oxidation); C2(Carbamidomethyl) CID 1.0000 0.0000 1 1 179 2.20 0.00 0 3 100 2 573.26532 1145.52336 0.22 42.25 3391 3391 MS2 9/16 Linfeng_20120514_rIgG_3.raw High YNILGTNTImDK Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 M10(Oxidation) CID 1.0000 0.0000 1 1 490 2.22 0.00 0 13 100 2 699.85278 1398.69829 3.50 35.29 2318 2318 MS2 16/22 Linfeng_20120514_rIgG_4.raw High YNILGTNTImDK Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 M10(Oxidation) CID 1.0000 0.0000 1 1 507 2.30 0.00 0 17 100 2 699.85236 1398.69744 2.89 35.37 2294 2294 MS2 13/22 Linfeng_20120515_BRCA1_3.raw High SSGPTSLFAVTVAPPGAR Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 CID 1.0000 0.0000 1 1 522 2.31 0.00 0 9 100 2 857.95978 1714.91228 -0.04 48.03 4364 4364 MS2 12/34 Linfeng_20120514_rIgG_3.raw High YNILGTNTImDK Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 M10(Oxidation) CID 1.0000 0.0000 1 1 504 2.37 0.00 0 9 100 2 699.85242 1398.69756 2.97 36.30 2430 2430 MS2 17/22 Linfeng_20120514_rIgG_4.raw High SSGPTSLFAVTVAPPGAR Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 CID 1.0000 0.0000 1 1 488 2.49 0.00 0 30 100 2 857.96118 1714.91509 1.60 47.58 4076 4076 MS2 12/34 Linfeng_20120515_BRCA1_4.raw High YNILGTNTImDK Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 M10(Oxidation) CID 1.0000 0.0000 1 1 503 2.77 0.00 0 8 100 2 699.85248 1398.69768 3.06 36.39 2421 2421 MS2 16/22 Linfeng_20120515_BRCA1_3.raw High SSGPTSLFAVTVAPPGAR Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 CID 1.0000 0.0000 1 1 546 2.78 0.00 0 19 100 2 857.96106 1714.91484 1.45 46.99 4133 4133 MS2 15/34 Linfeng_20120514_rIgG_3.raw High SSGPTSLFAVTVAPPGAR Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 CID 1.0000 0.0000 1 1 536 2.99 0.00 0 27 100 2 857.95972 1714.91216 -0.11 47.21 3863 3863 MS2 14/34 Linfeng_20120515_BRCA1_3.raw High NFILDQTNVSAAAQR Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 CID 1.0000 0.0000 1 1 608 3.29 0.00 0 3 100 2 824.42749 1647.84770 1.65 38.13 2639 2639 MS2 21/28 Linfeng_20120514_rIgG_4.raw High YNILGTNTImDK Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 M10(Oxidation) CID 1.0000 0.0000 1 1 482 3.36 0.00 0 2 100 2 699.85175 1398.69621 2.01 36.12 2714 2714 MS2 18/22 Linfeng_20120514_rIgG_3.raw High NFILDQTNVSAAAQR Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 CID 1.0000 0.0000 1 1 634 3.89 0.00 0 5 100 2 824.42761 1647.84795 1.80 37.96 2934 2934 MS2 22/28 Linfeng_20120514_rIgG_3.raw High NFILDQTNVSAAAQR Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 CID 1.0000 0.0000 1 1 646 4.42 0.00 0 38 100 2 824.42694 1647.84661 0.99 38.23 2625 2625 MS2 21/28 Linfeng_20120515_BRCA1_3.raw High NFILDQTNVSAAAQR Unambiguous 4 4 IPI00883857.2;IPI00479217.1;IPI00644079.3;IPI00644224.2 CID 1.0000 0.0000 1 1 625 4.56 0.00 0 6 100 2 824.42688 1647.84648 0.91 38.98 3062 3062 MS2 23/28 Linfeng_20120514_rIgG_3.raw IPI00009865.4 "Keratin, type I cytoskeletal 10" 40.75 1 20 21 432 703.61 38.53 20 239 548.15 33.05 16 193 584 58.8 5.21 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High QSVEADINGLR Unambiguous 3 3 IPI00009865.4;IPI00009866.7;IPI00171196.2 CID 1.0000 0.0000 1 1 470 2.00 0.00 0 22 100 2 601.31342 1201.61955 1.96 32.16 2087 2087 MS2 11/20 Linfeng_20120514_rIgG_8.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 531 2.00 0.00 1 4 100 2 717.89130 1434.77532 3.70 34.36 2208 2208 MS2 11/20 Linfeng_20120514_rIgG_4.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 453 2.01 0.00 0 11 100 2 695.84595 1390.68462 2.65 32.90 2173 2173 MS2 16/24 Linfeng_20120514_rIgG_9.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 177 2.02 0.00 0 34 100 2 555.25018 1109.49309 2.90 34.64 2195 2195 MS2 12/16 Linfeng_20120515_BRCA1_3.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 434 2.02 0.00 0 0 100 2 695.84290 1390.67851 -1.74 33.93 2559 2559 MS2 13/24 Linfeng_20120515_BRCA1_5.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 431 2.03 0.00 0 22 100 2 695.84570 1390.68413 2.30 32.73 1901 1901 MS2 14/24 Linfeng_20120515_BRCA1_6.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 459 2.05 0.00 0 15 100 2 695.84589 1390.68450 2.56 32.80 2160 2160 MS2 13/24 Linfeng_20120514_rIgG_9.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 423 2.06 0.00 0 7 100 2 695.84412 1390.68096 0.02 33.61 2527 2527 MS2 16/24 Linfeng_20120515_BRCA1_8.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 443 2.07 0.00 0 14 100 2 695.84601 1390.68474 2.74 32.96 2044 2044 MS2 13/24 Linfeng_20120515_BRCA1_9.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 167 2.07 0.00 0 38 100 2 555.25024 1109.49321 3.01 36.60 2721 2721 MS2 12/16 Linfeng_20120514_rIgG_1.raw High QSVEADINGLR Unambiguous 3 3 IPI00009865.4;IPI00009866.7;IPI00171196.2 CID 1.0000 0.0000 1 1 465 2.08 0.00 0 23 100 2 601.31378 1201.62029 2.57 32.72 2013 2013 MS2 12/20 Linfeng_20120515_BRCA1_9.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 485 2.09 0.00 0 18 100 2 695.84644 1390.68559 3.35 32.58 2125 2125 MS2 18/24 Linfeng_20120514_rIgG_10.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 431 2.10 0.00 0 14 100 2 695.84607 1390.68486 2.83 32.84 2167 2167 MS2 12/24 Linfeng_20120514_rIgG_9.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 436 2.10 0.00 0 6 100 2 695.84448 1390.68169 0.54 33.83 2043 2043 MS2 15/24 Linfeng_20120515_BRCA1_6.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 521 2.11 0.00 1 10 100 2 717.89105 1434.77483 3.36 34.53 2288 2288 MS2 12/20 Linfeng_20120515_BRCA1_9.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 177 2.11 0.00 0 24 100 2 555.25024 1109.49321 3.01 36.02 2373 2373 MS2 12/16 Linfeng_20120515_BRCA1_3.raw High VLDELTLTK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 458 2.11 0.00 0 7 100 2 516.30444 1031.60161 3.16 36.39 2650 2650 MS2 13/16 Linfeng_20120514_rIgG_5.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 455 2.11 0.00 0 17 100 2 695.84637 1390.68547 3.27 32.74 2153 2153 MS2 14/24 Linfeng_20120514_rIgG_9.raw High VLDELTLTK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 414 2.12 0.00 0 18 100 2 516.30420 1031.60112 2.69 34.80 2221 2221 MS2 11/16 Linfeng_20120515_BRCA1_3.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 424 2.12 0.00 0 21 100 2 695.84607 1390.68486 2.83 32.60 2136 2136 MS2 18/24 Linfeng_20120514_rIgG_8.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 437 2.13 0.00 0 18 100 2 695.84552 1390.68376 2.04 32.66 1969 1969 MS2 16/24 Linfeng_20120515_BRCA1_7.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 493 2.13 0.00 1 0 100 2 1106.55542 2212.10356 2.51 47.38 3403 3403 MS2 11/36 Linfeng_20120515_BRCA1_2.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 443 2.14 0.00 0 24 100 2 695.84619 1390.68511 3.00 32.52 2118 2118 MS2 15/24 Linfeng_20120514_rIgG_10.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 412 2.15 0.00 0 25 100 2 695.84619 1390.68511 3.00 32.67 1932 1932 MS2 18/24 Linfeng_20120515_BRCA1_3.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 483 2.16 0.00 1 0 100 2 1106.55554 2212.10381 2.62 47.68 4100 4100 MS2 12/36 Linfeng_20120515_BRCA1_4.raw High LKYENEVALR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 490 2.16 0.00 1 3 100 2 617.84424 1234.68120 1.73 26.98 1567 1567 MS2 12/18 Linfeng_20120514_rIgG_3.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 419 2.16 0.00 0 16 100 2 695.84619 1390.68511 3.00 32.81 1912 1912 MS2 13/24 Linfeng_20120515_BRCA1_6.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 528 2.17 0.00 0 12 100 2 695.84729 1390.68730 4.58 32.58 2305 2305 MS2 17/24 Linfeng_20120515_BRCA1_8.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 470 2.17 0.00 0 16 100 2 695.84595 1390.68462 2.65 32.44 1979 1979 MS2 16/24 Linfeng_20120514_rIgG_5.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 447 2.18 0.00 0 33 100 2 695.84521 1390.68315 1.60 31.79 2166 2166 MS2 14/24 Linfeng_20120514_rIgG_2.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 435 2.18 0.00 0 8 100 2 695.84448 1390.68169 0.54 33.42 2047 2047 MS2 17/24 Linfeng_20120514_rIgG_7.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 173 2.18 0.00 0 27 100 2 555.24933 1109.49138 1.36 36.65 2304 2304 MS2 11/16 Linfeng_20120515_BRCA1_2.raw High LKYENEVALR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 557 2.19 0.00 1 0 100 2 617.84296 1234.67864 -0.34 26.99 1499 1499 MS2 12/18 Linfeng_20120515_BRCA1_1.raw High QSVEADINGLR Unambiguous 3 3 IPI00009865.4;IPI00009866.7;IPI00171196.2 CID 1.0000 0.0000 1 1 509 2.19 0.00 0 31 100 2 601.31329 1201.61931 1.76 32.50 2114 2114 MS2 11/20 Linfeng_20120514_rIgG_10.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 413 2.20 0.00 0 19 100 2 695.84460 1390.68193 0.72 31.95 2193 2193 MS2 14/24 Linfeng_20120514_rIgG_2.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 186 2.21 0.00 0 13 100 2 555.24994 1109.49260 2.46 36.04 2687 2687 MS2 11/16 Linfeng_20120514_rIgG_6.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 203 2.21 0.00 0 35 100 2 555.25079 1109.49431 4.00 34.29 2534 2534 MS2 10/16 Linfeng_20120515_BRCA1_10.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 178 2.21 0.00 0 31 100 2 555.25012 1109.49297 2.79 34.38 2215 2215 MS2 11/16 Linfeng_20120515_BRCA1_7.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 472 2.22 0.00 1 18 100 2 1106.54919 2212.09111 -3.12 47.01 3939 3939 MS2 11/36 Linfeng_20120515_BRCA1_4.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 532 2.23 0.00 0 18 100 2 695.84686 1390.68645 3.97 32.61 2229 2229 MS2 18/24 Linfeng_20120515_BRCA1_10.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 463 2.23 0.00 0 22 100 2 695.84607 1390.68486 2.83 32.83 2026 2026 MS2 16/24 Linfeng_20120515_BRCA1_9.raw High QSVEADINGLR Unambiguous 3 3 IPI00009865.4;IPI00009866.7;IPI00171196.2 CID 1.0000 0.0000 1 1 484 2.24 0.00 0 13 100 2 601.31317 1201.61907 1.55 31.85 2175 2175 MS2 12/20 Linfeng_20120514_rIgG_2.raw High LKYENEVALR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 426 2.24 0.00 1 19 100 2 617.84253 1234.67778 -1.04 25.62 1473 1473 MS2 12/18 Linfeng_20120515_BRCA1_5.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 242 2.24 0.00 0 0 100 2 854.38934 1707.77141 -0.48 39.17 2510 2510 MS2 15/36 Linfeng_20120515_BRCA1_2.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 501 2.24 0.00 0 7 100 2 695.84546 1390.68364 1.95 33.83 2127 2127 MS2 14/24 Linfeng_20120515_BRCA1_7.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 436 2.25 0.00 0 30 100 2 695.84625 1390.68523 3.09 32.15 2142 2142 MS2 14/24 Linfeng_20120514_rIgG_3.raw High VLDELTLTK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 446 2.25 0.00 0 32 100 2 516.30426 1031.60124 2.80 36.66 2730 2730 MS2 12/16 Linfeng_20120514_rIgG_1.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 538 2.26 0.00 1 33 100 2 717.89075 1434.77422 2.94 35.52 2373 2373 MS2 13/20 Linfeng_20120515_BRCA1_7.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 477 2.26 0.00 0 15 100 2 695.84552 1390.68376 2.04 32.82 1982 1982 MS2 18/24 Linfeng_20120515_BRCA1_7.raw High QSVEADINGLR Unambiguous 3 3 IPI00009865.4;IPI00009866.7;IPI00171196.2 CID 1.0000 0.0000 1 1 484 2.26 0.00 0 14 100 2 601.31323 1201.61919 1.65 32.35 2107 2107 MS2 13/20 Linfeng_20120514_rIgG_8.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 455 2.26 0.00 0 13 100 2 695.84558 1390.68389 2.12 33.08 2195 2195 MS2 15/24 Linfeng_20120514_rIgG_9.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 174 2.26 0.00 0 11 100 2 555.25012 1109.49297 2.79 36.11 2667 2667 MS2 13/16 Linfeng_20120514_rIgG_1.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 437 2.27 0.00 0 31 100 2 695.84314 1390.67900 -1.39 34.06 2594 2594 MS2 15/24 Linfeng_20120515_BRCA1_5.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 190 2.27 0.00 0 43 100 2 555.24872 1109.49016 0.26 33.76 2465 2465 MS2 12/16 Linfeng_20120514_rIgG_2.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 505 2.28 0.00 1 0 100 2 1106.55310 2212.09892 0.41 46.80 4321 4321 MS2 10/36 Linfeng_20120514_rIgG_6.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 511 2.28 0.00 1 6 100 2 717.89050 1434.77373 2.60 34.66 2226 2226 MS2 12/20 Linfeng_20120514_rIgG_7.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 515 2.29 0.00 0 18 100 2 695.84650 1390.68572 3.44 32.54 2219 2219 MS2 18/24 Linfeng_20120515_BRCA1_10.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 170 2.29 0.00 0 34 100 2 555.25006 1109.49285 2.68 34.64 2221 2221 MS2 13/16 Linfeng_20120514_rIgG_7.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 462 2.29 0.00 0 24 100 2 695.84644 1390.68559 3.35 32.50 2213 2213 MS2 15/24 Linfeng_20120515_BRCA1_10.raw High QSVEADINGLR Unambiguous 3 3 IPI00009865.4;IPI00009866.7;IPI00171196.2 CID 1.0000 0.0000 1 1 519 2.30 0.00 0 26 100 2 601.31329 1201.61931 1.76 32.67 2141 2141 MS2 13/20 Linfeng_20120514_rIgG_10.raw High LKYENEVALR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 521 2.30 0.00 1 8 100 2 617.84265 1234.67803 -0.84 25.56 1468 1468 MS2 13/18 Linfeng_20120514_rIgG_2.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 467 2.30 0.00 1 12 100 2 1106.55066 2212.09404 -1.80 47.07 4150 4150 MS2 13/36 Linfeng_20120514_rIgG_3.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 437 2.30 0.00 0 4 100 2 695.84558 1390.68389 2.12 33.29 2307 2307 MS2 17/24 Linfeng_20120514_rIgG_3.raw High HGNSHQGEPR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 199 2.30 0.00 0 0 100 2 559.75836 1118.50945 0.73 11.87 641 641 MS2 14/18 Linfeng_20120514_rIgG_1.raw High VLDELTLTK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 462 2.30 0.00 0 22 100 2 516.30450 1031.60173 3.28 36.54 2768 2768 MS2 13/16 Linfeng_20120514_rIgG_6.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 192 2.30 0.00 0 10 100 2 555.25055 1109.49382 3.56 35.28 2280 2280 MS2 13/16 Linfeng_20120515_BRCA1_3.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 453 2.31 0.00 0 12 100 2 695.84570 1390.68413 2.30 33.68 2053 2053 MS2 15/24 Linfeng_20120515_BRCA1_3.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 214 2.31 0.00 0 33 100 2 555.25049 1109.49370 3.45 34.90 2205 2205 MS2 11/16 Linfeng_20120515_BRCA1_6.raw High VLDELTLTK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 385 2.32 0.00 0 8 100 2 516.30347 1031.59966 1.27 36.55 2604 2604 MS2 14/16 Linfeng_20120515_BRCA1_1.raw Medium IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 640 2.32 0.00 1 26 100 3 478.92804 1434.76957 -0.30 35.94 2811 2811 MS2 16/40 Linfeng_20120514_rIgG_2.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 415 2.32 0.00 0 18 100 2 695.84637 1390.68547 3.27 32.61 1870 1870 MS2 15/24 Linfeng_20120515_BRCA1_2.raw Medium NQILNLTTDNANILLQIDNAR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 388 2.32 0.00 0 4 15 3 789.75861 2367.26126 -0.63 49.04 4607 4607 MS2 22/80 Linfeng_20120514_rIgG_3.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 586 2.32 0.00 1 19 100 2 717.88861 1434.76995 -0.04 34.74 2752 2752 MS2 14/20 Linfeng_20120515_BRCA1_5.raw Medium IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 547 2.32 0.00 1 30 100 3 478.92969 1434.77451 3.14 34.43 2199 2199 MS2 18/40 Linfeng_20120515_BRCA1_4.raw Medium IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 628 2.32 0.00 1 33 100 3 478.92911 1434.77277 1.93 36.14 2719 2719 MS2 14/40 Linfeng_20120514_rIgG_3.raw Medium IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 558 2.32 0.00 1 30 100 3 478.92950 1434.77396 2.76 34.50 2427 2427 MS2 16/40 Linfeng_20120514_rIgG_10.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 193 2.32 0.00 0 31 100 2 555.25055 1109.49382 3.56 35.58 2526 2526 MS2 11/16 Linfeng_20120514_rIgG_5.raw Medium IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 556 2.32 0.00 1 31 100 3 478.92947 1434.77387 2.70 35.04 2497 2497 MS2 17/40 Linfeng_20120514_rIgG_10.raw High VLDELTLTK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 417 2.33 0.00 0 20 100 2 516.30371 1031.60015 1.74 34.42 2480 2480 MS2 14/16 Linfeng_20120514_rIgG_3.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 602 2.33 0.00 1 0 100 2 717.88971 1434.77214 1.49 34.40 2326 2326 MS2 12/20 Linfeng_20120514_rIgG_5.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 245 2.33 0.00 0 7 100 2 854.39026 1707.77324 0.59 40.16 3142 3142 MS2 17/36 Linfeng_20120514_rIgG_9.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 472 2.33 0.00 0 16 100 2 695.84656 1390.68584 3.53 32.62 1943 1943 MS2 16/24 Linfeng_20120515_BRCA1_4.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 511 2.33 0.00 1 0 100 2 1106.55383 2212.10039 1.07 47.32 4025 4025 MS2 12/36 Linfeng_20120514_rIgG_4.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 171 2.34 0.00 0 13 100 2 555.25012 1109.49297 2.79 34.70 2114 2114 MS2 11/16 Linfeng_20120515_BRCA1_2.raw Medium ADLEmQIESLTEELAYLKK Unambiguous 1 1 IPI00009865.4 M5(Oxidation) CID 1.0000 0.0000 1 1 574 2.34 0.00 1 13 57 3 747.38452 2240.13901 1.01 55.48 5241 5241 MS2 23/72 Linfeng_20120514_rIgG_4.raw Medium ADLEmQIESLTEELAYLKK Unambiguous 1 1 IPI00009865.4 M5(Oxidation) CID 1.0000 0.0000 1 1 574 2.35 0.00 1 16 100 3 747.38385 2240.13700 0.11 49.65 4852 4852 MS2 21/72 Linfeng_20120515_BRCA1_1.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 439 2.35 0.00 0 9 100 2 695.84595 1390.68462 2.65 33.62 1968 1968 MS2 17/24 Linfeng_20120515_BRCA1_2.raw Medium IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 553 2.35 0.00 1 39 100 3 478.93011 1434.77579 4.04 34.72 2205 2205 MS2 20/40 Linfeng_20120515_BRCA1_3.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 406 2.35 0.00 0 23 100 2 695.84637 1390.68547 3.27 32.27 2157 2157 MS2 17/24 Linfeng_20120514_rIgG_3.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 443 2.37 0.00 0 7 100 2 695.84607 1390.68486 2.83 33.54 2153 2153 MS2 16/24 Linfeng_20120515_BRCA1_1.raw High VLDELTLTK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 386 2.37 0.00 0 23 100 2 516.30475 1031.60222 3.75 34.69 2243 2243 MS2 14/16 Linfeng_20120515_BRCA1_4.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 178 2.37 0.00 0 33 100 2 555.24969 1109.49211 2.02 34.72 2235 2235 MS2 13/16 Linfeng_20120514_rIgG_7.raw High HGNSHQGEPR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 191 2.37 0.00 0 2 100 2 559.75842 1118.50957 0.84 11.81 639 639 MS2 14/18 Linfeng_20120514_rIgG_2.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 179 2.37 0.00 0 23 100 2 555.25018 1109.49309 2.90 34.87 2487 2487 MS2 13/16 Linfeng_20120514_rIgG_6.raw High VLDELTLTK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 407 2.37 0.00 0 4 64 2 516.30420 1031.60112 2.69 35.43 2612 2612 MS2 14/16 Linfeng_20120514_rIgG_3.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 181 2.38 0.00 0 6 100 2 555.24982 1109.49236 2.24 35.71 2214 2214 MS2 13/16 Linfeng_20120515_BRCA1_2.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 474 2.39 0.00 0 0 100 2 998.98914 1996.97099 -0.01 39.95 3155 3155 MS2 13/32 Linfeng_20120514_rIgG_3.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 238 2.39 0.00 0 0 100 2 854.39014 1707.77300 0.45 39.28 2703 2703 MS2 16/36 Linfeng_20120515_BRCA1_3.raw Medium IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 553 2.39 0.00 1 24 100 3 478.93021 1434.77607 4.23 34.50 2211 2211 MS2 20/40 Linfeng_20120515_BRCA1_4.raw High VLDELTLTK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 409 2.39 0.00 0 21 100 2 516.30267 1031.59807 -0.27 34.26 2550 2550 MS2 13/16 Linfeng_20120514_rIgG_2.raw Medium IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 625 2.40 0.00 1 46 100 3 478.92914 1434.77286 1.99 34.74 2239 2239 MS2 20/40 Linfeng_20120514_rIgG_7.raw High AETEcQNTEYQQLLDIK Unambiguous 1 1 IPI00009865.4 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 343 2.40 0.00 0 5 100 2 1041.98621 2082.96514 0.12 43.18 3094 3094 MS2 17/32 Linfeng_20120515_BRCA1_4.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 444 2.40 0.00 0 12 100 2 695.84576 1390.68425 2.39 32.75 2153 2153 MS2 15/24 Linfeng_20120514_rIgG_8.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 173 2.40 0.00 0 8 100 2 555.24939 1109.49150 1.47 36.48 2684 2684 MS2 11/16 Linfeng_20120514_rIgG_10.raw High LKYENEVALR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 511 2.41 0.00 1 1 100 2 617.84387 1234.68047 1.14 26.74 1543 1543 MS2 14/18 Linfeng_20120514_rIgG_3.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 178 2.41 0.00 0 4 100 2 555.25006 1109.49285 2.68 35.78 2372 2372 MS2 13/16 Linfeng_20120514_rIgG_4.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 532 2.41 0.00 0 18 100 2 695.84717 1390.68706 4.41 34.03 2204 2204 MS2 15/24 Linfeng_20120515_BRCA1_9.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 502 2.41 0.00 1 15 100 2 1106.55237 2212.09746 -0.25 47.21 3987 3987 MS2 10/36 Linfeng_20120515_BRCA1_4.raw High SSSSGSVGESSSK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 151 2.41 0.00 0 8 100 2 593.26489 1185.52251 -0.42 3.52 189 189 MS2 17/24 Linfeng_20120515_BRCA1_1.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 183 2.42 0.00 0 45 100 2 555.24927 1109.49126 1.25 34.70 2479 2479 MS2 12/16 Linfeng_20120514_rIgG_9.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 198 2.42 0.00 0 9 100 2 555.25061 1109.49394 3.67 35.34 2289 2289 MS2 13/16 Linfeng_20120515_BRCA1_3.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 464 2.42 0.00 0 29 100 2 695.84644 1390.68559 3.35 32.11 2138 2138 MS2 14/24 Linfeng_20120514_rIgG_3.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 170 2.42 0.00 0 40 100 2 555.24921 1109.49114 1.14 36.85 2961 2961 MS2 11/16 Linfeng_20120514_rIgG_2.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 185 2.42 0.00 0 14 100 2 555.24976 1109.49224 2.13 36.31 2738 2738 MS2 11/16 Linfeng_20120514_rIgG_3.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 411 2.43 0.00 0 17 100 2 695.84448 1390.68169 0.54 34.10 2524 2524 MS2 15/24 Linfeng_20120514_rIgG_2.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 177 2.43 0.00 0 5 100 2 555.24921 1109.49114 1.14 36.39 2579 2579 MS2 13/16 Linfeng_20120515_BRCA1_1.raw Medium IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 552 2.43 0.00 1 50 100 3 478.92972 1434.77460 3.21 34.83 2226 2226 MS2 20/40 Linfeng_20120515_BRCA1_3.raw Medium SKELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 571 2.43 0.00 1 17 75 3 738.03668 2212.09549 -1.14 47.56 4257 4257 MS2 20/72 Linfeng_20120514_rIgG_3.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 445 2.44 0.00 0 7 100 2 695.84595 1390.68462 2.65 33.62 2406 2406 MS2 15/24 Linfeng_20120515_BRCA1_10.raw Medium IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 568 2.44 0.00 1 53 100 3 478.92960 1434.77423 2.95 34.87 2231 2231 MS2 17/40 Linfeng_20120515_BRCA1_3.raw Medium IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 553 2.44 0.00 1 31 100 3 478.92972 1434.77460 3.21 35.37 2327 2327 MS2 17/40 Linfeng_20120514_rIgG_4.raw Medium IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 564 2.45 0.00 1 41 100 3 478.92938 1434.77359 2.50 35.76 2618 2618 MS2 15/40 Linfeng_20120514_rIgG_1.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 406 2.45 0.00 0 18 100 2 695.84247 1390.67766 -2.35 33.57 2471 2471 MS2 13/24 Linfeng_20120515_BRCA1_5.raw Medium VLDELTLTKADLEmQIESLTEELAYLKK Unambiguous 1 1 IPI00009865.4 M14(Oxidation) CID 1.0000 0.0000 1 1 262 2.45 0.00 2 42 54 3 1084.91492 3252.73020 3.98 55.47 5626 5626 MS2 13/108 Linfeng_20120515_BRCA1_1.raw Medium IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 626 2.45 0.00 1 29 100 3 478.92911 1434.77277 1.93 34.75 2464 2464 MS2 20/40 Linfeng_20120514_rIgG_10.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 173 2.46 0.00 0 5 100 2 555.24951 1109.49175 1.69 35.48 2619 2619 MS2 13/16 Linfeng_20120514_rIgG_3.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 213 2.46 0.00 0 9 100 2 555.25043 1109.49358 3.34 36.34 2469 2469 MS2 13/16 Linfeng_20120515_BRCA1_4.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 208 2.47 0.00 0 20 100 2 555.25061 1109.49394 3.67 36.24 2399 2399 MS2 12/16 Linfeng_20120515_BRCA1_3.raw High LKYENEVALR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 545 2.47 0.00 1 0 100 2 617.84308 1234.67888 -0.15 25.95 1487 1487 MS2 14/18 Linfeng_20120514_rIgG_3.raw High VLDELTLTK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 417 2.49 0.00 0 18 100 2 516.30359 1031.59990 1.50 34.50 2419 2419 MS2 14/16 Linfeng_20120514_rIgG_6.raw High VLDELTLTK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 470 2.49 0.00 0 12 100 2 516.30438 1031.60149 3.04 36.70 2524 2524 MS2 12/16 Linfeng_20120515_BRCA1_4.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 556 2.50 0.00 1 11 100 2 717.89081 1434.77434 3.02 35.39 2496 2496 MS2 13/20 Linfeng_20120514_rIgG_5.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 498 2.50 0.00 0 5 100 2 695.84540 1390.68352 1.86 33.77 2342 2342 MS2 16/24 Linfeng_20120514_rIgG_8.raw High LKYENEVALR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 455 2.50 0.00 1 2 100 2 617.84253 1234.67778 -1.04 25.30 1450 1450 MS2 12/18 Linfeng_20120514_rIgG_2.raw High QSVEADINGLR Unambiguous 3 3 IPI00009865.4;IPI00009866.7;IPI00171196.2 CID 1.0000 0.0000 1 1 538 2.51 0.00 0 13 100 2 601.31256 1201.61785 0.54 31.89 2182 2182 MS2 12/20 Linfeng_20120514_rIgG_2.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 449 2.51 0.00 0 7 100 2 695.84546 1390.68364 1.95 33.65 2290 2290 MS2 17/24 Linfeng_20120514_rIgG_10.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 537 2.52 0.00 1 7 100 2 717.89050 1434.77373 2.60 35.54 2196 2196 MS2 12/20 Linfeng_20120515_BRCA1_2.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 456 2.52 0.00 0 19 100 2 695.84613 1390.68498 2.91 32.62 2134 2134 MS2 18/24 Linfeng_20120514_rIgG_10.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 544 2.52 0.00 1 2 100 2 717.89044 1434.77361 2.51 34.33 2206 2206 MS2 12/20 Linfeng_20120515_BRCA1_7.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 180 2.52 0.00 0 9 100 2 555.24908 1109.49089 0.92 36.49 2592 2592 MS2 13/16 Linfeng_20120515_BRCA1_1.raw High VLDELTLTK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 360 2.52 0.00 0 9 100 2 516.30389 1031.60051 2.09 36.58 2457 2457 MS2 13/16 Linfeng_20120514_rIgG_4.raw High NVSTGDVNVEMNAAPGVDLTQLLNNMR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 548 2.52 0.00 0 33 100 3 958.13934 2872.40348 3.67 49.36 4788 4788 MS2 25/104 Linfeng_20120515_BRCA1_1.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 625 2.53 0.00 1 40 100 3 478.92877 1434.77176 1.23 35.46 2447 2447 MS2 17/40 Linfeng_20120515_BRCA1_1.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 176 2.53 0.00 0 18 100 2 555.25012 1109.49297 2.79 35.58 2317 2317 MS2 12/16 Linfeng_20120515_BRCA1_3.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 177 2.53 0.00 0 3 46 2 555.24994 1109.49260 2.46 35.25 2421 2421 MS2 13/16 Linfeng_20120515_BRCA1_1.raw High QSVEADINGLR Unambiguous 3 3 IPI00009865.4;IPI00009866.7;IPI00171196.2 CID 1.0000 0.0000 1 1 460 2.54 0.00 0 15 100 2 601.31348 1201.61968 2.06 32.50 2123 2123 MS2 14/20 Linfeng_20120514_rIgG_8.raw High LKYENEVALR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 500 2.54 0.00 1 6 100 2 617.84424 1234.68120 1.73 26.92 1562 1562 MS2 13/18 Linfeng_20120514_rIgG_3.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 267 2.55 0.00 0 0 100 2 854.38898 1707.77068 -0.91 39.39 2678 2678 MS2 16/36 Linfeng_20120515_BRCA1_6.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 495 2.56 0.00 1 12 100 2 1106.55396 2212.10063 1.18 46.80 4360 4360 MS2 12/36 Linfeng_20120514_rIgG_1.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 579 2.56 0.00 0 13 100 3 666.32922 1996.97312 1.05 47.34 4206 4206 MS2 23/64 Linfeng_20120514_rIgG_3.raw Medium ELTTEIDNNIEQISSYKSEITELRR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 522 2.57 0.00 2 46 100 4 746.13135 2981.50356 -0.92 48.74 4837 4837 MS2 31/144 Linfeng_20120514_rIgG_1.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 175 2.57 0.00 0 23 100 2 555.24988 1109.49248 2.35 34.98 2218 2218 MS2 11/16 Linfeng_20120515_BRCA1_6.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 551 2.57 0.00 1 40 100 3 478.92957 1434.77414 2.89 34.89 2342 2342 MS2 19/40 Linfeng_20120515_BRCA1_9.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 454 2.57 0.00 0 11 100 2 695.84583 1390.68437 2.48 32.71 2149 2149 MS2 19/24 Linfeng_20120514_rIgG_8.raw High VLDELTLTK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 432 2.58 0.00 0 2 98 2 516.30450 1031.60173 3.28 35.57 2349 2349 MS2 14/16 Linfeng_20120514_rIgG_4.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 580 2.58 0.00 1 2 100 2 717.88940 1434.77153 1.07 34.22 2263 2263 MS2 14/20 Linfeng_20120515_BRCA1_1.raw High ADLEmQIESLTEELAYLK Unambiguous 1 1 IPI00009865.4 M5(Oxidation) CID 1.0000 0.0000 1 1 471 2.60 0.00 0 6 2 2 1056.52417 2112.04106 -0.34 49.09 5052 5052 MS2 13/34 Linfeng_20120514_rIgG_8.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 177 2.60 0.00 0 4 72 2 555.24908 1109.49089 0.92 34.73 2624 2624 MS2 13/16 Linfeng_20120514_rIgG_2.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 172 2.60 0.00 0 3 92 2 555.24921 1109.49114 1.14 34.55 2597 2597 MS2 13/16 Linfeng_20120514_rIgG_2.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 179 2.60 0.00 0 10 100 2 555.24854 1109.48979 -0.07 36.51 2908 2908 MS2 11/16 Linfeng_20120514_rIgG_2.raw Medium VLDELTLTKADLEmQIESLTEELAYLKK Unambiguous 1 1 IPI00009865.4 M14(Oxidation) CID 1.0000 0.0000 1 1 274 2.61 0.00 2 14 21 4 813.93561 3252.72060 1.03 55.45 5621 5621 MS2 37/162 Linfeng_20120515_BRCA1_1.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 203 2.61 0.00 0 18 100 2 555.25043 1109.49358 3.34 35.71 2333 2333 MS2 13/16 Linfeng_20120515_BRCA1_3.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 184 2.62 0.00 0 36 100 2 555.25006 1109.49285 2.68 34.57 2500 2500 MS2 13/16 Linfeng_20120514_rIgG_8.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 169 2.62 0.00 0 4 100 2 555.24988 1109.49248 2.35 35.16 2582 2582 MS2 13/16 Linfeng_20120514_rIgG_3.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 172 2.62 0.00 0 26 100 2 555.24884 1109.49040 0.48 36.63 2930 2930 MS2 12/16 Linfeng_20120514_rIgG_2.raw High ADLEmQIESLTEELAYLKK Unambiguous 1 1 IPI00009865.4 M5(Oxidation) CID 1.0000 0.0000 1 1 566 2.63 0.00 1 12 56 3 747.38367 2240.13645 -0.13 55.53 5769 5769 MS2 23/72 Linfeng_20120514_rIgG_1.raw High VLDELTLTK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 395 2.63 0.00 0 4 100 2 516.30371 1031.60015 1.74 35.74 2593 2593 MS2 12/16 Linfeng_20120514_rIgG_10.raw High VLDELTLTK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 424 2.63 0.00 0 4 65 2 516.30444 1031.60161 3.16 35.69 2381 2381 MS2 14/16 Linfeng_20120515_BRCA1_4.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 457 2.63 0.00 0 18 100 2 695.84509 1390.68291 1.42 31.99 2197 2197 MS2 21/24 Linfeng_20120514_rIgG_2.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 173 2.63 0.00 0 14 100 2 555.25018 1109.49309 2.90 35.43 2300 2300 MS2 13/16 Linfeng_20120515_BRCA1_3.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 252 2.64 0.00 0 0 100 2 854.38995 1707.77263 0.23 39.23 2788 2788 MS2 17/36 Linfeng_20120515_BRCA1_4.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 181 2.64 0.00 0 35 100 2 555.24957 1109.49187 1.80 34.08 2371 2371 MS2 11/16 Linfeng_20120514_rIgG_1.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 229 2.65 0.00 0 5 100 2 854.38971 1707.77214 -0.05 40.24 2858 2858 MS2 18/36 Linfeng_20120515_BRCA1_4.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 523 2.65 0.00 0 0 100 2 998.98962 1996.97197 0.48 48.04 4367 4367 MS2 16/32 Linfeng_20120514_rIgG_3.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 511 2.65 0.00 0 16 100 2 695.84650 1390.68572 3.44 32.51 2295 2295 MS2 17/24 Linfeng_20120515_BRCA1_8.raw High VLDELTLTK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 387 2.65 0.00 0 10 100 2 516.30359 1031.59990 1.50 36.00 2500 2500 MS2 14/16 Linfeng_20120515_BRCA1_9.raw High VLDELTLTK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 416 2.65 0.00 0 6 100 2 516.30371 1031.60015 1.74 36.44 2752 2752 MS2 15/16 Linfeng_20120514_rIgG_3.raw High TIDDLKNQILNLTTDNANILLQIDNAR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 204 2.66 0.00 1 10 100 3 1018.21600 3052.63346 1.97 55.56 5361 5361 MS2 23/104 Linfeng_20120514_rIgG_5.raw High LKYENEVALR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 538 2.66 0.00 1 3 100 2 617.84271 1234.67815 -0.74 25.64 1474 1474 MS2 15/18 Linfeng_20120514_rIgG_2.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 527 2.66 0.00 0 0 100 2 998.98962 1996.97197 0.48 47.81 3950 3950 MS2 15/32 Linfeng_20120515_BRCA1_6.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 559 2.66 0.00 1 15 44 3 738.03876 2212.10172 1.67 46.90 3915 3915 MS2 20/72 Linfeng_20120515_BRCA1_4.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 545 2.67 0.00 1 26 100 3 478.92969 1434.77451 3.14 35.25 2312 2312 MS2 17/40 Linfeng_20120514_rIgG_4.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 502 2.67 0.00 1 26 100 3 478.93039 1434.77661 4.61 34.63 2233 2233 MS2 19/40 Linfeng_20120515_BRCA1_4.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 451 2.67 0.00 0 19 100 2 695.84552 1390.68376 2.04 32.68 1958 1958 MS2 17/24 Linfeng_20120514_rIgG_7.raw High VLDELTLTK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 337 2.68 0.00 0 18 100 2 516.30322 1031.59917 0.79 34.37 2420 2420 MS2 14/16 Linfeng_20120514_rIgG_1.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 432 2.68 0.00 0 23 100 2 695.84583 1390.68437 2.48 32.52 2230 2230 MS2 16/24 Linfeng_20120515_BRCA1_5.raw High ADLEmQIESLTEELAYLKK Unambiguous 1 1 IPI00009865.4 M5(Oxidation) CID 1.0000 0.0000 1 1 551 2.69 0.00 1 20 88 3 747.38464 2240.13938 1.17 55.48 5766 5766 MS2 24/72 Linfeng_20120514_rIgG_6.raw High VLDELTLTK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 406 2.69 0.00 0 20 100 2 516.30377 1031.60027 1.86 34.82 2498 2498 MS2 13/16 Linfeng_20120514_rIgG_9.raw High VLDELTLTK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 418 2.69 0.00 0 20 100 2 516.30408 1031.60088 2.45 34.52 2311 2311 MS2 14/16 Linfeng_20120515_BRCA1_1.raw High VLDELTLTK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 324 2.70 0.00 0 9 100 2 516.30322 1031.59917 0.79 35.60 2938 2938 MS2 14/16 Linfeng_20120515_BRCA1_5.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 168 2.70 0.00 0 3 100 2 555.25000 1109.49272 2.57 35.22 2588 2588 MS2 13/16 Linfeng_20120514_rIgG_3.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 596 2.70 0.00 1 4 100 2 717.88910 1434.77092 0.64 33.94 2606 2606 MS2 14/20 Linfeng_20120515_BRCA1_8.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 592 2.70 0.00 1 14 100 2 717.88934 1434.77141 0.98 34.71 2484 2484 MS2 14/20 Linfeng_20120514_rIgG_9.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 426 2.71 0.00 0 22 100 2 695.84637 1390.68547 3.27 32.37 1951 1951 MS2 20/24 Linfeng_20120514_rIgG_4.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 619 2.71 0.00 1 13 100 3 478.92886 1434.77204 1.42 34.95 2660 2660 MS2 19/40 Linfeng_20120514_rIgG_2.raw High VLDELTLTK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 381 2.71 0.00 0 15 100 2 516.30243 1031.59758 -0.75 35.28 2704 2704 MS2 14/16 Linfeng_20120514_rIgG_2.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 249 2.71 0.00 0 19 100 2 854.39081 1707.77434 1.23 38.97 3146 3146 MS2 13/36 Linfeng_20120514_rIgG_8.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 180 2.72 0.00 0 12 100 2 555.24933 1109.49138 1.36 36.19 2725 2725 MS2 12/16 Linfeng_20120514_rIgG_3.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 174 2.72 0.00 0 26 100 2 555.24933 1109.49138 1.36 34.77 2757 2757 MS2 13/16 Linfeng_20120515_BRCA1_5.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 158 2.72 0.00 0 4 100 2 555.25024 1109.49321 3.01 35.39 2330 2330 MS2 13/16 Linfeng_20120514_rIgG_4.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 254 2.72 0.00 0 5 100 2 854.38910 1707.77092 -0.77 39.23 2755 2755 MS2 15/36 Linfeng_20120515_BRCA1_7.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 454 2.73 0.00 0 20 100 2 695.84644 1390.68559 3.35 32.41 2042 2042 MS2 15/24 Linfeng_20120514_rIgG_6.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 169 2.74 0.00 0 16 100 2 555.24902 1109.49077 0.81 36.67 2622 2622 MS2 13/16 Linfeng_20120515_BRCA1_1.raw High ADLEmQIESLTEELAYLKK Unambiguous 1 1 IPI00009865.4 M5(Oxidation) CID 1.0000 0.0000 1 1 567 2.74 0.00 1 27 62 3 747.38281 2240.13388 -1.28 55.42 4504 4504 MS2 18/72 Linfeng_20120515_BRCA1_2.raw High VLDELTLTK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 453 2.74 0.00 0 4 100 2 516.30444 1031.60161 3.16 35.82 2349 2349 MS2 14/16 Linfeng_20120515_BRCA1_3.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 170 2.74 0.00 0 15 100 2 555.25024 1109.49321 3.01 35.79 2344 2344 MS2 11/16 Linfeng_20120515_BRCA1_3.raw High VLDELTLTK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 403 2.74 0.00 0 5 100 2 516.30371 1031.60015 1.74 35.70 2342 2342 MS2 14/16 Linfeng_20120514_rIgG_7.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 628 2.75 0.00 1 41 100 3 478.92856 1434.77112 0.78 35.51 2455 2455 MS2 19/40 Linfeng_20120515_BRCA1_1.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 170 2.75 0.00 0 12 100 2 555.25024 1109.49321 3.01 35.12 2259 2259 MS2 11/16 Linfeng_20120515_BRCA1_3.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 168 2.75 0.00 0 8 100 2 555.24945 1109.49162 1.58 35.86 2679 2679 MS2 13/16 Linfeng_20120514_rIgG_3.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 449 2.75 0.00 0 22 100 2 695.84589 1390.68450 2.56 32.87 2032 2032 MS2 17/24 Linfeng_20120515_BRCA1_9.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 172 2.75 0.00 0 6 100 2 555.24939 1109.49150 1.47 36.33 2569 2569 MS2 13/16 Linfeng_20120515_BRCA1_1.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 170 2.75 0.00 0 3 100 2 555.24969 1109.49211 2.02 35.39 2548 2548 MS2 13/16 Linfeng_20120514_rIgG_10.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 166 2.75 0.00 0 6 100 2 555.24994 1109.49260 2.46 35.70 2630 2630 MS2 12/16 Linfeng_20120514_rIgG_9.raw High VLDELTLTK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 460 2.76 0.00 0 8 100 2 516.30420 1031.60112 2.69 34.94 2635 2635 MS2 14/16 Linfeng_20120515_BRCA1_10.raw High VLDELTLTK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 420 2.76 0.00 0 7 100 2 516.30426 1031.60124 2.80 36.05 2508 2508 MS2 14/16 Linfeng_20120515_BRCA1_9.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 527 2.76 0.00 1 9 100 2 717.89026 1434.77324 2.26 34.60 2163 2163 MS2 13/20 Linfeng_20120515_BRCA1_6.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 203 2.76 0.00 0 10 100 2 555.25031 1109.49333 3.12 35.47 2303 2303 MS2 12/16 Linfeng_20120515_BRCA1_3.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 486 2.76 0.00 0 0 100 2 998.99261 1996.97795 3.47 39.92 3366 3366 MS2 16/32 Linfeng_20120514_rIgG_2.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 603 2.77 0.00 1 19 100 2 717.88934 1434.77141 0.98 34.81 2767 2767 MS2 13/20 Linfeng_20120515_BRCA1_5.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 574 2.77 0.00 1 31 67 3 738.03943 2212.10373 2.58 46.64 4416 4416 MS2 15/72 Linfeng_20120514_rIgG_8.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 175 2.77 0.00 0 13 100 2 555.24963 1109.49199 1.91 35.02 2511 2511 MS2 13/16 Linfeng_20120514_rIgG_6.raw High VLDELTLTK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 347 2.77 0.00 0 18 100 2 516.30304 1031.59880 0.44 34.57 2713 2713 MS2 14/16 Linfeng_20120515_BRCA1_5.raw High ADLEmQIESLTEELAYLKK Unambiguous 1 1 IPI00009865.4 M5(Oxidation) CID 1.0000 0.0000 1 1 565 2.77 0.00 1 22 64 3 747.38287 2240.13407 -1.20 55.43 5188 5188 MS2 22/72 Linfeng_20120515_BRCA1_7.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 537 2.77 0.00 0 21 100 2 998.99115 1996.97502 2.00 39.80 3352 3352 MS2 19/32 Linfeng_20120514_rIgG_2.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 172 2.78 0.00 0 6 100 2 555.25024 1109.49321 3.01 35.34 2333 2333 MS2 13/16 Linfeng_20120515_BRCA1_4.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 172 2.78 0.00 0 5 100 2 555.24951 1109.49175 1.69 35.98 2517 2517 MS2 13/16 Linfeng_20120515_BRCA1_1.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 624 2.78 0.00 1 22 100 3 478.92911 1434.77277 1.93 35.05 2392 2392 MS2 17/40 Linfeng_20120515_BRCA1_1.raw High VLDELTLTK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 419 2.78 0.00 0 8 100 2 516.30463 1031.60198 3.51 36.40 2701 2701 MS2 13/16 Linfeng_20120514_rIgG_1.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 180 2.79 0.00 0 8 100 2 555.24969 1109.49211 2.02 35.72 2345 2345 MS2 13/16 Linfeng_20120514_rIgG_7.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 162 2.80 0.00 0 8 100 2 555.24823 1109.48918 -0.62 36.22 2856 2856 MS2 13/16 Linfeng_20120514_rIgG_2.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 183 2.81 0.00 0 5 100 2 555.24872 1109.49016 0.26 36.04 2525 2525 MS2 13/16 Linfeng_20120515_BRCA1_1.raw Medium VLDELTLTKADLEmQIESLTEELAYLKK Unambiguous 1 1 IPI00009865.4 M14(Oxidation) CID 1.0000 0.0000 1 1 271 2.81 0.00 2 8 45 4 813.93701 3252.72622 2.75 55.52 5807 5807 MS2 29/162 Linfeng_20120514_rIgG_2.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 171 2.81 0.00 0 9 100 2 555.24963 1109.49199 1.91 36.14 2718 2718 MS2 13/16 Linfeng_20120514_rIgG_3.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 164 2.81 0.00 0 9 100 2 555.24951 1109.49175 1.69 36.08 2709 2709 MS2 13/16 Linfeng_20120514_rIgG_3.raw High QSVEADINGLR Unambiguous 3 3 IPI00009865.4;IPI00009866.7;IPI00171196.2 CID 1.0000 0.0000 1 1 576 2.81 0.00 0 7 100 2 601.31390 1201.62053 2.77 32.54 1930 1930 MS2 13/20 Linfeng_20120515_BRCA1_4.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 256 2.81 0.00 0 12 100 2 854.39093 1707.77458 1.38 40.06 3192 3192 MS2 15/36 Linfeng_20120514_rIgG_6.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 174 2.81 0.00 0 19 100 2 555.24963 1109.49199 1.91 36.56 2298 2298 MS2 12/16 Linfeng_20120515_BRCA1_2.raw High ADLEmQIESLTEELAYLKK Unambiguous 1 1 IPI00009865.4 M5(Oxidation) CID 1.0000 0.0000 1 1 552 2.82 0.00 1 5 80 3 747.38470 2240.13956 1.26 55.51 5349 5349 MS2 20/72 Linfeng_20120514_rIgG_5.raw High NVQALEIELQSQLALK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 270 2.82 0.00 0 1 9 3 599.67621 1797.01407 1.31 48.99 4308 4308 MS2 21/60 Linfeng_20120515_BRCA1_3.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 552 2.82 0.00 1 12 35 3 738.03723 2212.09714 -0.40 47.13 4187 4187 MS2 21/72 Linfeng_20120515_BRCA1_1.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 427 2.83 0.00 0 18 100 2 695.84637 1390.68547 3.27 32.50 2020 2020 MS2 18/24 Linfeng_20120515_BRCA1_1.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 218 2.84 0.00 0 12 100 2 555.25043 1109.49358 3.34 35.08 2255 2255 MS2 13/16 Linfeng_20120515_BRCA1_3.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 221 2.84 0.00 0 8 100 2 555.25043 1109.49358 3.34 35.17 2266 2266 MS2 12/16 Linfeng_20120515_BRCA1_3.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 177 2.85 0.00 0 5 100 2 555.24908 1109.49089 0.92 34.43 2577 2577 MS2 13/16 Linfeng_20120514_rIgG_2.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 171 2.85 0.00 0 5 100 2 555.24921 1109.49114 1.14 34.89 2549 2549 MS2 13/16 Linfeng_20120514_rIgG_3.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 168 2.85 0.00 0 5 100 2 555.24902 1109.49077 0.81 36.10 2532 2532 MS2 13/16 Linfeng_20120515_BRCA1_1.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 168 2.85 0.00 0 5 100 2 555.24915 1109.49101 1.03 36.18 2547 2547 MS2 13/16 Linfeng_20120515_BRCA1_1.raw High VLDELTLTK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 421 2.85 0.00 0 5 100 2 516.30383 1031.60039 1.98 35.52 2595 2595 MS2 13/16 Linfeng_20120514_rIgG_6.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 166 2.85 0.00 0 3 84 2 555.24872 1109.49016 0.26 35.70 2484 2484 MS2 13/16 Linfeng_20120515_BRCA1_1.raw High VLDELTLTK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 449 2.86 0.00 0 9 100 2 516.30420 1031.60112 2.69 35.18 2389 2389 MS2 14/16 Linfeng_20120515_BRCA1_9.raw High AETEcQNTEYQQLLDIK Unambiguous 1 1 IPI00009865.4 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 363 2.86 0.00 0 2 100 3 694.99335 2082.96549 0.28 43.28 3501 3501 MS2 20/64 Linfeng_20120514_rIgG_3.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 172 2.86 0.00 0 4 100 2 555.24915 1109.49101 1.03 35.78 2977 2977 MS2 13/16 Linfeng_20120515_BRCA1_5.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 174 2.87 0.00 0 3 45 2 555.24969 1109.49211 2.02 35.02 2387 2387 MS2 13/16 Linfeng_20120515_BRCA1_1.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 170 2.87 0.00 0 3 49 2 555.24933 1109.49138 1.36 34.95 2377 2377 MS2 13/16 Linfeng_20120515_BRCA1_1.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 169 2.87 0.00 0 8 100 2 555.24963 1109.49199 1.91 35.97 2242 2242 MS2 13/16 Linfeng_20120515_BRCA1_2.raw High QSVEADINGLR Unambiguous 3 3 IPI00009865.4;IPI00009866.7;IPI00171196.2 CID 1.0000 0.0000 1 1 517 2.88 0.00 0 26 100 2 601.31378 1201.62029 2.57 32.60 2129 2129 MS2 15/20 Linfeng_20120514_rIgG_10.raw High VLDELTLTK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 428 2.90 0.00 0 34 100 2 516.30377 1031.60027 1.86 34.50 2485 2485 MS2 13/16 Linfeng_20120514_rIgG_8.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 442 2.90 0.00 0 17 100 2 695.84607 1390.68486 2.83 32.53 2023 2023 MS2 19/24 Linfeng_20120515_BRCA1_1.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 178 2.90 0.00 0 11 100 2 555.25018 1109.49309 2.90 36.39 2495 2495 MS2 13/16 Linfeng_20120515_BRCA1_7.raw High VLDELTLTK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 435 2.91 0.00 0 4 100 2 516.30432 1031.60137 2.92 35.38 2494 2494 MS2 14/16 Linfeng_20120514_rIgG_5.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 174 2.92 0.00 0 5 100 2 555.24921 1109.49114 1.14 34.36 2565 2565 MS2 13/16 Linfeng_20120514_rIgG_2.raw High VLDELTLTK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 397 2.92 0.00 0 23 100 2 516.30328 1031.59929 0.91 34.57 2743 2743 MS2 13/16 Linfeng_20120515_BRCA1_8.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 561 2.92 0.00 1 17 58 3 738.03864 2212.10135 1.51 47.13 4521 4521 MS2 18/72 Linfeng_20120514_rIgG_2.raw High VLDELTLTKADLEMQIESLTEELAYLK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 280 2.92 0.00 1 0 100 3 1036.88391 3108.63718 3.16 55.42 5781 5781 MS2 21/104 Linfeng_20120514_rIgG_2.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 609 2.93 0.00 1 0 100 2 717.89001 1434.77275 1.92 34.06 2520 2520 MS2 13/20 Linfeng_20120514_rIgG_2.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 210 2.93 0.00 0 8 100 2 555.25037 1109.49346 3.23 35.39 2350 2350 MS2 13/16 Linfeng_20120515_BRCA1_7.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 255 2.93 0.00 0 4 100 2 854.38885 1707.77043 -1.05 38.91 2910 2910 MS2 20/36 Linfeng_20120515_BRCA1_1.raw High VLDELTLTK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 321 2.94 0.00 0 4 74 2 516.30322 1031.59917 0.79 35.55 2460 2460 MS2 15/16 Linfeng_20120515_BRCA1_1.raw High NVQALEIELQSQLALK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 261 2.94 0.00 0 0 100 3 599.67603 1797.01352 1.00 49.30 4557 4557 MS2 21/60 Linfeng_20120514_rIgG_4.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 184 2.94 0.00 0 4 100 2 555.24976 1109.49224 2.13 35.03 2565 2565 MS2 13/16 Linfeng_20120514_rIgG_3.raw High QSVEADINGLR Unambiguous 3 3 IPI00009865.4;IPI00009866.7;IPI00171196.2 CID 1.0000 0.0000 1 1 568 2.94 0.00 0 7 100 2 601.31409 1201.62090 3.08 32.62 1942 1942 MS2 15/20 Linfeng_20120515_BRCA1_4.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 165 2.95 0.00 0 4 58 2 555.24908 1109.49089 0.92 35.54 2459 2459 MS2 13/16 Linfeng_20120515_BRCA1_1.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 202 2.95 0.00 0 12 100 2 555.25043 1109.49358 3.34 35.00 2244 2244 MS2 12/16 Linfeng_20120515_BRCA1_3.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 447 2.95 0.00 0 22 100 2 695.84595 1390.68462 2.65 32.19 2148 2148 MS2 17/24 Linfeng_20120514_rIgG_3.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 167 2.96 0.00 0 4 59 2 555.24951 1109.49175 1.69 34.88 2652 2652 MS2 14/16 Linfeng_20120514_rIgG_2.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 170 2.96 0.00 0 7 100 2 555.25006 1109.49285 2.68 35.58 2673 2673 MS2 13/16 Linfeng_20120514_rIgG_8.raw High AETEcQNTEYQQLLDIK Unambiguous 1 1 IPI00009865.4 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 323 2.96 0.00 0 0 100 2 1041.98706 2082.96684 0.94 43.02 3478 3478 MS2 17/32 Linfeng_20120514_rIgG_6.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 555 2.96 0.00 1 29 100 3 478.92950 1434.77396 2.76 34.59 2226 2226 MS2 19/40 Linfeng_20120515_BRCA1_4.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 176 2.97 0.00 0 3 100 2 555.25006 1109.49285 2.68 35.09 2525 2525 MS2 13/16 Linfeng_20120514_rIgG_1.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 604 2.97 0.00 1 6 100 2 717.88977 1434.77226 1.58 35.23 2679 2679 MS2 15/20 Linfeng_20120515_BRCA1_10.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 200 2.97 0.00 0 14 100 2 555.25061 1109.49394 3.67 35.52 2310 2310 MS2 12/16 Linfeng_20120515_BRCA1_3.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 163 2.98 0.00 0 4 89 2 555.24841 1109.48955 -0.29 35.69 2766 2766 MS2 13/16 Linfeng_20120514_rIgG_2.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 563 2.99 0.00 1 31 100 3 478.92920 1434.77304 2.12 34.98 2489 2489 MS2 19/40 Linfeng_20120514_rIgG_10.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 532 2.99 0.00 1 23 100 2 717.89130 1434.77532 3.70 35.35 2344 2344 MS2 13/20 Linfeng_20120515_BRCA1_7.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 511 2.99 0.00 1 13 100 2 717.89087 1434.77446 3.11 34.33 2184 2184 MS2 14/20 Linfeng_20120515_BRCA1_4.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 543 2.99 0.00 1 5 100 2 717.89026 1434.77324 2.26 35.35 2544 2544 MS2 15/20 Linfeng_20120514_rIgG_10.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 592 2.99 0.00 1 3 100 2 717.88989 1434.77251 1.75 34.25 2454 2454 MS2 16/20 Linfeng_20120514_rIgG_3.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 176 3.00 0.00 0 8 100 2 555.24951 1109.49175 1.69 35.96 2692 2692 MS2 13/16 Linfeng_20120514_rIgG_3.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 569 3.01 0.00 1 24 40 3 738.03571 2212.09256 -2.47 46.14 4690 4690 MS2 22/72 Linfeng_20120515_BRCA1_5.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 170 3.01 0.00 0 8 100 2 555.24847 1109.48967 -0.18 36.39 2888 2888 MS2 13/16 Linfeng_20120514_rIgG_2.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 178 3.01 0.00 0 3 100 2 555.25012 1109.49297 2.79 35.26 2592 2592 MS2 13/16 Linfeng_20120514_rIgG_3.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 181 3.02 0.00 0 4 100 2 555.25006 1109.49285 2.68 35.43 2613 2613 MS2 13/16 Linfeng_20120514_rIgG_3.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 472 3.02 0.00 0 17 100 2 695.84521 1390.68315 1.60 32.05 2208 2208 MS2 21/24 Linfeng_20120514_rIgG_2.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 179 3.02 0.00 0 4 53 2 555.24939 1109.49150 1.47 35.39 2440 2440 MS2 13/16 Linfeng_20120515_BRCA1_1.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 497 3.02 0.00 0 25 100 2 998.98907 1996.97087 -0.07 46.97 4172 4172 MS2 15/32 Linfeng_20120514_rIgG_9.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 490 3.03 0.00 0 0 100 2 998.98846 1996.96965 -0.69 47.51 4210 4210 MS2 16/32 Linfeng_20120514_rIgG_5.raw High ADLEmQIESLTEELAYLK Unambiguous 1 1 IPI00009865.4 M5(Oxidation) CID 1.0000 0.0000 1 1 454 3.03 0.00 0 0 100 2 1056.52588 2112.04448 1.28 55.41 5779 5779 MS2 15/34 Linfeng_20120514_rIgG_2.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 431 3.04 0.00 0 0 100 2 695.84363 1390.67998 -0.68 33.43 2205 2205 MS2 19/24 Linfeng_20120514_rIgG_6.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 176 3.04 0.00 0 6 86 2 555.24872 1109.49016 0.26 35.82 2496 2496 MS2 14/16 Linfeng_20120515_BRCA1_1.raw High VLDELTLTK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 406 3.04 0.00 0 4 100 2 516.30426 1031.60124 2.80 35.88 2343 2343 MS2 14/16 Linfeng_20120515_BRCA1_6.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 168 3.05 0.00 0 5 100 2 555.24811 1109.48894 -0.84 35.85 2795 2795 MS2 13/16 Linfeng_20120514_rIgG_2.raw High ADLEmQIESLTEELAYLKK Unambiguous 1 1 IPI00009865.4 M5(Oxidation) CID 1.0000 0.0000 1 1 565 3.05 0.00 1 13 26 3 747.38287 2240.13407 -1.20 55.41 5270 5270 MS2 19/72 Linfeng_20120515_BRCA1_4.raw High VLDELTLTK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 447 3.06 0.00 0 4 100 2 516.30408 1031.60088 2.45 35.71 2397 2397 MS2 14/16 Linfeng_20120515_BRCA1_7.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 170 3.06 0.00 0 2 100 2 555.24963 1109.49199 1.91 35.46 2556 2556 MS2 14/16 Linfeng_20120514_rIgG_10.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 565 3.06 0.00 1 20 82 3 738.03717 2212.09696 -0.48 47.40 4220 4220 MS2 21/72 Linfeng_20120514_rIgG_3.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 250 3.08 0.00 0 0 100 2 854.39038 1707.77349 0.73 39.08 2752 2752 MS2 16/36 Linfeng_20120514_rIgG_4.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 254 3.08 0.00 0 8 100 2 854.39026 1707.77324 0.59 39.00 2924 2924 MS2 19/36 Linfeng_20120514_rIgG_10.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 167 3.08 0.00 0 8 100 2 555.24933 1109.49138 1.36 36.04 2702 2702 MS2 13/16 Linfeng_20120514_rIgG_3.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 176 3.08 0.00 0 2 76 2 555.24902 1109.49077 0.81 34.69 2619 2619 MS2 13/16 Linfeng_20120514_rIgG_2.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 238 3.08 0.00 0 4 100 2 854.39124 1707.77519 1.73 38.77 3220 3220 MS2 15/36 Linfeng_20120514_rIgG_2.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 171 3.09 0.00 0 4 64 2 555.24945 1109.49162 1.58 34.74 2342 2342 MS2 13/16 Linfeng_20120515_BRCA1_1.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 177 3.09 0.00 0 3 57 2 555.24908 1109.49089 0.92 35.48 2451 2451 MS2 13/16 Linfeng_20120515_BRCA1_1.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 524 3.09 0.00 1 8 100 2 717.89075 1434.77422 2.94 34.22 2519 2519 MS2 13/20 Linfeng_20120515_BRCA1_10.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 494 3.10 0.00 0 0 100 2 998.98920 1996.97112 0.05 46.96 4076 4076 MS2 18/32 Linfeng_20120514_rIgG_5.raw High ADLEmQIESLTEELAYLK Unambiguous 1 1 IPI00009865.4 M5(Oxidation) CID 1.0000 0.0000 1 1 527 3.10 0.00 0 2 1 3 704.68701 2112.04648 2.23 49.09 4489 4489 MS2 25/68 Linfeng_20120515_BRCA1_4.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 235 3.10 0.00 0 3 100 2 854.38947 1707.77165 -0.34 40.02 3006 3006 MS2 17/36 Linfeng_20120514_rIgG_10.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 175 3.10 0.00 0 4 100 2 555.24927 1109.49126 1.25 34.52 2592 2592 MS2 13/16 Linfeng_20120514_rIgG_2.raw High TIDDLKNQILNLTTDNANILLQIDNAR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 204 3.12 0.00 1 0 100 3 1018.21564 3052.63236 1.61 55.54 5783 5783 MS2 23/104 Linfeng_20120514_rIgG_6.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 173 3.13 0.00 0 14 100 2 555.24988 1109.49248 2.35 35.99 2359 2359 MS2 13/16 Linfeng_20120515_BRCA1_6.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 166 3.14 0.00 0 4 43 2 555.24902 1109.49077 0.81 35.14 2404 2404 MS2 13/16 Linfeng_20120515_BRCA1_1.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 175 3.15 0.00 0 4 54 2 555.24988 1109.49248 2.35 34.85 2359 2359 MS2 13/16 Linfeng_20120515_BRCA1_1.raw High VLDELTLTK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 443 3.15 0.00 0 4 60 2 516.30438 1031.60149 3.04 35.39 2559 2559 MS2 15/16 Linfeng_20120514_rIgG_1.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 242 3.16 0.00 0 0 100 2 854.38989 1707.77251 0.16 40.18 2574 2574 MS2 19/36 Linfeng_20120515_BRCA1_2.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 512 3.17 0.00 0 16 100 2 695.84662 1390.68596 3.62 32.45 2153 2153 MS2 20/24 Linfeng_20120514_rIgG_1.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 202 3.17 0.00 0 2 100 2 555.25055 1109.49382 3.56 35.33 2322 2322 MS2 13/16 Linfeng_20120514_rIgG_4.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 491 3.17 0.00 1 0 100 2 1106.55225 2212.09722 -0.36 47.44 4229 4229 MS2 14/36 Linfeng_20120514_rIgG_3.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 429 3.18 0.00 0 3 100 2 695.84497 1390.68266 1.25 33.65 2088 2088 MS2 18/24 Linfeng_20120515_BRCA1_4.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 174 3.18 0.00 0 5 100 2 555.25006 1109.49285 2.68 35.07 2569 2569 MS2 13/16 Linfeng_20120514_rIgG_3.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 227 3.18 0.00 0 4 100 2 854.39142 1707.77556 1.95 39.00 3082 3082 MS2 17/36 Linfeng_20120514_rIgG_6.raw High VLDELTLTK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 401 3.18 0.00 0 4 100 2 516.30383 1031.60039 1.98 35.52 2664 2664 MS2 15/16 Linfeng_20120514_rIgG_8.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 250 3.18 0.00 0 2 100 2 854.39270 1707.77812 3.45 38.84 3020 3020 MS2 17/36 Linfeng_20120514_rIgG_1.raw High VLDELTLTK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 413 3.18 0.00 0 15 100 2 516.30365 1031.60002 1.62 34.73 2460 2460 MS2 15/16 Linfeng_20120514_rIgG_10.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 522 3.19 0.00 1 0 100 2 1106.55103 2212.09477 -1.47 47.61 4269 4269 MS2 17/36 Linfeng_20120514_rIgG_3.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 162 3.19 0.00 0 5 100 2 555.24829 1109.48931 -0.51 35.79 2786 2786 MS2 13/16 Linfeng_20120514_rIgG_2.raw High ADLEmQIESLTEELAYLKK Unambiguous 1 1 IPI00009865.4 M5(Oxidation) CID 1.0000 0.0000 1 1 558 3.20 0.00 1 15 24 3 747.38458 2240.13919 1.09 55.45 5620 5620 MS2 22/72 Linfeng_20120515_BRCA1_1.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 601 3.21 0.00 1 14 100 2 717.88934 1434.77141 0.98 34.42 2468 2468 MS2 16/20 Linfeng_20120514_rIgG_8.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 175 3.22 0.00 0 7 100 2 555.24945 1109.49162 1.58 36.14 2539 2539 MS2 13/16 Linfeng_20120515_BRCA1_1.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 250 3.23 0.00 0 10 100 2 854.39063 1707.77397 1.02 39.06 2989 2989 MS2 18/36 Linfeng_20120514_rIgG_5.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 170 3.26 0.00 0 4 43 2 555.24939 1109.49150 1.47 35.19 2413 2413 MS2 13/16 Linfeng_20120515_BRCA1_1.raw High VLDELTLTK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 450 3.26 0.00 0 4 100 2 516.30396 1031.60063 2.21 35.77 2222 2222 MS2 15/16 Linfeng_20120515_BRCA1_2.raw High AETEcQNTEYQQLLDIK Unambiguous 1 1 IPI00009865.4 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 347 3.27 0.00 0 0 100 2 1041.98669 2082.96611 0.58 43.54 4056 4056 MS2 15/32 Linfeng_20120515_BRCA1_5.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 433 3.28 0.00 0 3 100 2 695.84473 1390.68218 0.90 33.08 2351 2351 MS2 21/24 Linfeng_20120514_rIgG_2.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 507 3.31 0.00 1 4 100 2 717.89117 1434.77507 3.53 35.24 2545 2545 MS2 14/20 Linfeng_20120514_rIgG_6.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 250 3.32 0.00 0 14 100 2 854.39008 1707.77287 0.38 39.14 3054 3054 MS2 14/36 Linfeng_20120514_rIgG_9.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 448 3.32 0.00 0 21 100 2 695.84607 1390.68486 2.83 32.44 2012 2012 MS2 19/24 Linfeng_20120515_BRCA1_1.raw High AETEcQNTEYQQLLDIK Unambiguous 1 1 IPI00009865.4 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 346 3.33 0.00 0 2 100 2 1041.98511 2082.96294 -0.94 43.21 2784 2784 MS2 18/32 Linfeng_20120515_BRCA1_2.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 514 3.33 0.00 0 6 100 2 998.98926 1996.97124 0.11 47.42 4278 4278 MS2 18/32 Linfeng_20120514_rIgG_9.raw High NVQALEIELQSQLALK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 268 3.33 0.00 0 9 3 2 899.00879 1797.01030 -0.79 48.99 5013 5013 MS2 15/30 Linfeng_20120515_BRCA1_10.raw High DAEAWFNEK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 178 3.35 0.00 0 3 48 2 555.24902 1109.49077 0.81 35.35 2435 2435 MS2 14/16 Linfeng_20120515_BRCA1_1.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 635 3.36 0.00 1 9 100 3 478.92917 1434.77295 2.06 35.12 2578 2578 MS2 22/40 Linfeng_20120514_rIgG_3.raw High AETEcQNTEYQQLLDIK Unambiguous 1 1 IPI00009865.4 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 327 3.36 0.00 0 8 100 2 1041.98669 2082.96611 0.58 43.04 3105 3105 MS2 20/32 Linfeng_20120514_rIgG_4.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 249 3.39 0.00 0 8 100 2 854.38989 1707.77251 0.16 39.16 3319 3319 MS2 18/36 Linfeng_20120515_BRCA1_10.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 232 3.41 0.00 0 10 100 2 854.38831 1707.76933 -1.70 39.39 2898 2898 MS2 22/36 Linfeng_20120515_BRCA1_9.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 522 3.41 0.00 1 3 100 2 717.89075 1434.77422 2.94 35.34 2334 2334 MS2 15/20 Linfeng_20120515_BRCA1_4.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 518 3.43 0.00 1 0 100 2 1106.55139 2212.09551 -1.14 46.86 4125 4125 MS2 18/36 Linfeng_20120515_BRCA1_1.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 250 3.45 0.00 0 3 100 2 854.38971 1707.77214 -0.05 39.10 2713 2713 MS2 21/36 Linfeng_20120514_rIgG_7.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 240 3.46 0.00 0 10 100 2 854.39111 1707.77495 1.59 40.07 3088 3088 MS2 18/36 Linfeng_20120514_rIgG_5.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 537 3.47 0.00 1 6 100 2 717.88702 1434.76677 -2.25 33.72 2509 2509 MS2 16/20 Linfeng_20120515_BRCA1_5.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 542 3.47 0.00 1 21 100 3 478.92957 1434.77414 2.89 35.09 2526 2526 MS2 24/40 Linfeng_20120514_rIgG_1.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 444 3.48 0.00 0 5 100 2 695.84576 1390.68425 2.39 33.46 2284 2284 MS2 18/24 Linfeng_20120514_rIgG_1.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 556 3.49 0.00 1 14 38 3 738.03735 2212.09751 -0.23 46.90 4134 4134 MS2 24/72 Linfeng_20120515_BRCA1_1.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 508 3.51 0.00 1 2 100 2 717.89087 1434.77446 3.11 35.37 2328 2328 MS2 15/20 Linfeng_20120514_rIgG_4.raw High AETEcQNTEYQQLLDIK Unambiguous 1 1 IPI00009865.4 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 353 3.51 0.00 0 17 100 2 1041.98987 2082.97246 3.63 42.86 3478 3478 MS2 18/32 Linfeng_20120514_rIgG_1.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 501 3.52 0.00 1 1 100 2 717.89087 1434.77446 3.11 35.26 2593 2593 MS2 16/20 Linfeng_20120514_rIgG_3.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 457 3.53 0.00 0 0 100 2 998.98834 1996.96941 -0.81 46.94 3741 3741 MS2 17/32 Linfeng_20120515_BRCA1_6.raw High AETEcQNTEYQQLLDIK Unambiguous 1 1 IPI00009865.4 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 317 3.55 0.00 0 0 100 2 1041.98438 2082.96147 -1.64 43.87 3592 3592 MS2 16/32 Linfeng_20120514_rIgG_3.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 554 3.56 0.00 1 0 100 2 717.88910 1434.77092 0.64 34.24 2371 2371 MS2 15/20 Linfeng_20120514_rIgG_6.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 250 3.56 0.00 0 9 100 2 854.39081 1707.77434 1.23 39.98 3256 3256 MS2 17/36 Linfeng_20120514_rIgG_8.raw High QSLEASLAETEGR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 411 3.58 0.00 0 2 100 2 695.84625 1390.68523 3.09 33.49 2092 2092 MS2 20/24 Linfeng_20120514_rIgG_4.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 259 3.59 0.00 0 0 100 2 854.38910 1707.77092 -0.77 39.93 3003 3003 MS2 22/36 Linfeng_20120515_BRCA1_1.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 491 3.62 0.00 1 0 100 2 1106.55420 2212.10112 1.40 47.54 4251 4251 MS2 20/36 Linfeng_20120514_rIgG_3.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 511 3.69 0.00 0 0 100 2 998.98956 1996.97185 0.41 47.07 3975 3975 MS2 19/32 Linfeng_20120515_BRCA1_9.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 463 3.69 0.00 0 0 100 2 998.98828 1996.96929 -0.87 46.97 3740 3740 MS2 18/32 Linfeng_20120514_rIgG_7.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 480 3.72 0.00 0 0 100 2 998.98853 1996.96977 -0.62 47.69 4321 4321 MS2 18/32 Linfeng_20120515_BRCA1_1.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 241 3.72 0.00 0 11 100 2 854.38971 1707.77214 -0.05 39.10 3496 3496 MS2 19/36 Linfeng_20120515_BRCA1_5.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 627 3.73 0.00 1 9 100 2 717.88928 1434.77129 0.90 35.15 2532 2532 MS2 15/20 Linfeng_20120514_rIgG_1.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 529 3.75 0.00 0 11 100 2 998.98920 1996.97112 0.05 47.73 4175 4175 MS2 16/32 Linfeng_20120514_rIgG_10.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 254 3.76 0.00 0 8 100 2 854.39020 1707.77312 0.52 40.11 2797 2797 MS2 18/36 Linfeng_20120514_rIgG_7.raw High AETEcQNTEYQQLLDIK Unambiguous 1 1 IPI00009865.4 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 350 3.76 0.00 0 0 100 2 1041.98694 2082.96660 0.82 43.24 3392 3392 MS2 19/32 Linfeng_20120514_rIgG_5.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 541 3.77 0.00 0 0 100 2 998.99243 1996.97759 3.29 46.64 4411 4411 MS2 16/32 Linfeng_20120514_rIgG_2.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 491 3.79 0.00 0 4 100 2 998.98981 1996.97234 0.66 46.84 3966 3966 MS2 18/32 Linfeng_20120514_rIgG_10.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 464 3.81 0.00 0 0 100 2 998.98987 1996.97246 0.72 46.69 4087 4087 MS2 20/32 Linfeng_20120515_BRCA1_1.raw High AETEcQNTEYQQLLDIK Unambiguous 1 1 IPI00009865.4 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 334 3.81 0.00 0 2 100 2 1041.98474 2082.96221 -1.29 43.14 3308 3308 MS2 17/32 Linfeng_20120515_BRCA1_1.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 482 3.81 0.00 0 0 100 2 998.98932 1996.97136 0.17 46.84 4462 4462 MS2 19/32 Linfeng_20120514_rIgG_8.raw High NVSTGDVNVEMNAAPGVDLTQLLNNMR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 532 3.81 0.00 0 29 100 3 958.13428 2872.38828 -1.62 55.48 5755 5755 MS2 33/104 Linfeng_20120514_rIgG_1.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 442 3.81 0.00 0 0 100 2 998.98688 1996.96648 -2.27 47.06 4100 4100 MS2 17/32 Linfeng_20120514_rIgG_5.raw High ADLEmQIESLTEELAYLK Unambiguous 1 1 IPI00009865.4 M5(Oxidation) CID 1.0000 0.0000 1 1 534 3.82 0.00 0 5 2 3 704.68542 2112.04172 -0.03 49.09 5051 5051 MS2 28/68 Linfeng_20120514_rIgG_8.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 502 3.83 0.00 0 0 100 2 998.99048 1996.97368 1.33 46.89 3303 3303 MS2 17/32 Linfeng_20120515_BRCA1_2.raw High AETEcQNTEYQQLLDIK Unambiguous 1 1 IPI00009865.4 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 352 3.84 0.00 0 5 100 2 1041.98840 2082.96953 2.23 42.86 3726 3726 MS2 20/32 Linfeng_20120514_rIgG_2.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 525 3.86 0.00 0 0 100 2 998.99030 1996.97331 1.15 46.89 3923 3923 MS2 18/32 Linfeng_20120514_rIgG_4.raw High ADLEmQIESLTEELAYLK Unambiguous 1 1 IPI00009865.4 M5(Oxidation) CID 1.0000 0.0000 1 1 470 3.89 0.00 0 0 100 2 1056.52588 2112.04448 1.28 49.48 5141 5141 MS2 19/34 Linfeng_20120514_rIgG_2.raw High NQILNLTTDNANILLQIDNAR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 380 3.89 0.00 0 23 100 3 789.75977 2367.26474 0.84 49.70 5114 5114 MS2 24/80 Linfeng_20120514_rIgG_1.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 492 3.90 0.00 0 5 100 2 998.99164 1996.97600 2.49 46.84 3901 3901 MS2 19/32 Linfeng_20120515_BRCA1_4.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 238 3.91 0.00 0 1 100 2 854.38995 1707.77263 0.23 39.98 3158 3158 MS2 21/36 Linfeng_20120514_rIgG_3.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 501 3.92 0.00 0 0 100 2 998.98993 1996.97258 0.78 47.00 3815 3815 MS2 18/32 Linfeng_20120515_BRCA1_3.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 489 3.93 0.00 0 0 100 2 998.98950 1996.97173 0.35 47.63 3906 3906 MS2 19/32 Linfeng_20120515_BRCA1_6.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 529 3.97 0.00 1 12 100 2 717.89044 1434.77361 2.51 35.23 2419 2419 MS2 16/20 Linfeng_20120515_BRCA1_1.raw High AETEcQNTEYQQLLDIK Unambiguous 1 1 IPI00009865.4 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 334 3.98 0.00 0 3 100 2 1041.98608 2082.96489 0.00 43.18 2994 2994 MS2 18/32 Linfeng_20120515_BRCA1_3.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 483 3.98 0.00 0 7 100 2 998.98981 1996.97234 0.66 46.87 4463 4463 MS2 19/32 Linfeng_20120515_BRCA1_10.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 535 4.00 0.00 0 25 100 2 998.99084 1996.97441 1.70 48.03 4735 4735 MS2 19/32 Linfeng_20120514_rIgG_2.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 469 4.01 0.00 1 0 100 2 1106.55347 2212.09966 0.74 47.33 4204 4204 MS2 17/36 Linfeng_20120514_rIgG_3.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 452 4.02 0.00 0 4 100 2 998.98871 1996.97014 -0.44 47.13 4208 4208 MS2 21/32 Linfeng_20120514_rIgG_9.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 497 4.02 0.00 0 2 100 2 998.98907 1996.97087 -0.07 47.85 4324 4324 MS2 18/32 Linfeng_20120514_rIgG_3.raw High AETEcQNTEYQQLLDIK Unambiguous 1 1 IPI00009865.4 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 343 4.05 0.00 0 5 100 2 1041.98669 2082.96611 0.58 42.95 3942 3942 MS2 20/32 Linfeng_20120515_BRCA1_5.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 499 4.06 0.00 0 8 100 2 998.99048 1996.97368 1.33 47.76 3997 3997 MS2 18/32 Linfeng_20120515_BRCA1_3.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 246 4.06 0.00 0 0 100 2 854.39087 1707.77446 1.31 40.09 2839 2839 MS2 20/36 Linfeng_20120514_rIgG_4.raw High IRLENEIQTYR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 552 4.06 0.00 1 5 100 2 717.88892 1434.77056 0.39 35.06 2674 2674 MS2 16/20 Linfeng_20120514_rIgG_2.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 480 4.08 0.00 0 0 100 2 998.98938 1996.97148 0.23 47.93 4169 4169 MS2 19/32 Linfeng_20120514_rIgG_4.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 460 4.09 0.00 0 0 100 2 998.98773 1996.96819 -1.42 47.25 4849 4849 MS2 21/32 Linfeng_20120515_BRCA1_8.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 526 4.13 0.00 0 0 100 2 998.99164 1996.97600 2.49 46.92 3797 3797 MS2 18/32 Linfeng_20120515_BRCA1_3.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 543 4.21 0.00 0 0 100 2 998.99054 1996.97380 1.39 46.82 4103 4103 MS2 17/32 Linfeng_20120514_rIgG_3.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 501 4.24 0.00 0 0 100 2 998.99060 1996.97392 1.45 46.91 3831 3831 MS2 22/32 Linfeng_20120515_BRCA1_7.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 511 4.25 0.00 0 5 100 2 998.99084 1996.97441 1.70 47.62 4557 4557 MS2 19/32 Linfeng_20120514_rIgG_1.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 442 4.26 0.00 0 0 100 2 998.98651 1996.96575 -2.64 46.63 4812 4812 MS2 23/32 Linfeng_20120515_BRCA1_5.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 525 4.26 0.00 0 4 100 2 998.98950 1996.97173 0.35 47.85 4140 4140 MS2 20/32 Linfeng_20120515_BRCA1_4.raw High AETEcQNTEYQQLLDIK Unambiguous 1 1 IPI00009865.4 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 345 4.26 0.00 0 11 100 2 1041.98572 2082.96416 -0.35 42.94 3457 3457 MS2 18/32 Linfeng_20120514_rIgG_3.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 474 4.27 0.00 0 0 100 2 998.98975 1996.97222 0.60 47.64 4641 4641 MS2 19/32 Linfeng_20120514_rIgG_2.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 247 4.30 0.00 0 3 100 2 854.39301 1707.77873 3.81 39.86 3118 3118 MS2 20/36 Linfeng_20120514_rIgG_1.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 490 4.32 0.00 0 0 100 2 998.98779 1996.96831 -1.36 46.70 4295 4295 MS2 21/32 Linfeng_20120514_rIgG_6.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 520 4.37 0.00 0 5 100 2 998.98932 1996.97136 0.17 47.69 4540 4540 MS2 22/32 Linfeng_20120514_rIgG_6.raw High SKELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 518 4.42 0.00 1 0 100 2 1106.55469 2212.10210 1.84 46.73 4095 4095 MS2 15/36 Linfeng_20120515_BRCA1_1.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 269 4.53 0.00 0 0 100 2 854.39026 1707.77324 0.59 38.98 3064 3064 MS2 20/36 Linfeng_20120514_rIgG_3.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 464 4.62 0.00 0 0 100 2 998.98883 1996.97038 -0.32 47.00 3755 3755 MS2 20/32 Linfeng_20120515_BRCA1_6.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 446 4.63 0.00 0 0 100 2 998.98785 1996.96843 -1.30 46.88 4759 4759 MS2 21/32 Linfeng_20120515_BRCA1_8.raw High ELTTEIDNNIEQISSYK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 512 4.83 0.00 0 3 100 2 998.99139 1996.97551 2.25 46.59 4312 4312 MS2 22/32 Linfeng_20120514_rIgG_1.raw High GSLGGGFSSGGFSGGSFSR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 231 4.94 0.00 0 0 100 2 854.39142 1707.77556 1.95 39.77 3348 3348 MS2 24/36 Linfeng_20120514_rIgG_2.raw High NVSTGDVNVEMNAAPGVDLTQLLNNMR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 527 4.95 0.00 0 8 100 3 958.13531 2872.39139 -0.53 55.44 5616 5616 MS2 31/104 Linfeng_20120515_BRCA1_1.raw High NVQALEIELQSQLALK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 274 5.45 0.00 0 1 3 3 599.67529 1797.01133 -0.22 49.01 4464 4464 MS2 34/60 Linfeng_20120514_rIgG_4.raw High NQILNLTTDNANILLQIDNAR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 373 5.59 0.00 0 3 3 3 789.75934 2367.26346 0.30 49.01 4597 4597 MS2 35/80 Linfeng_20120514_rIgG_5.raw High VLDELTLTKADLEMQIESLTEELAYLKK Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 211 5.77 0.00 2 11 46 3 1079.58179 3236.73081 2.62 55.53 5809 5809 MS2 34/108 Linfeng_20120514_rIgG_2.raw High NQILNLTTDNANILLQIDNAR Unambiguous 1 1 IPI00009865.4 CID 1.0000 0.0000 1 1 383 5.90 0.00 0 2 1 3 789.75903 2367.26255 -0.09 49.05 4941 4941 MS2 34/80 Linfeng_20120514_rIgG_1.raw IPI00384444.6 "Keratin, type I cytoskeletal 14" 20.13 1 0 7 38 98.83 20.13 7 38 0.00 472 51.5 5.16 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 578 2.02 0.00 0 40 100 2 515.30121 1029.59514 1.16 37.05 2747 2747 MS2 11/16 Linfeng_20120514_rIgG_10.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 597 2.03 0.00 0 28 100 2 515.30145 1029.59563 1.64 36.93 2876 2876 MS2 12/16 Linfeng_20120514_rIgG_8.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 512 2.06 0.00 0 5 100 2 651.33282 1301.65837 -0.03 25.69 1470 1470 MS2 11/22 Linfeng_20120514_rIgG_3.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 560 2.06 0.00 0 29 100 2 515.30127 1029.59526 1.28 37.49 2897 2897 MS2 10/16 Linfeng_20120514_rIgG_9.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 591 2.07 0.00 0 35 100 2 515.30133 1029.59538 1.40 37.57 2908 2908 MS2 12/16 Linfeng_20120514_rIgG_9.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 599 2.14 0.00 0 9 100 2 515.30164 1029.59599 1.99 37.07 2514 2514 MS2 10/16 Linfeng_20120514_rIgG_4.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 627 2.15 0.00 0 33 100 2 515.30115 1029.59502 1.05 38.36 3160 3160 MS2 15/16 Linfeng_20120514_rIgG_2.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 512 2.17 0.00 0 4 100 2 651.33337 1301.65947 0.81 27.49 1653 1653 MS2 15/22 Linfeng_20120514_rIgG_2.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 618 2.21 0.00 0 10 100 2 515.30182 1029.59636 2.35 36.82 2803 2803 MS2 14/16 Linfeng_20120514_rIgG_6.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 597 2.22 0.00 0 17 100 2 515.30212 1029.59697 2.94 37.13 2753 2753 MS2 13/16 Linfeng_20120514_rIgG_5.raw High mSVEADINGLR Unambiguous 3 3 IPI00384444.6;IPI00789750.1;IPI00792454.1 M1(Oxidation) CID 1.0000 0.0000 1 1 467 2.23 0.00 0 48 100 2 610.80164 1220.59599 1.60 32.51 2159 2159 MS2 12/20 Linfeng_20120514_rIgG_1.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 614 2.23 0.00 0 7 100 2 515.30170 1029.59612 2.11 37.88 2951 2951 MS2 13/16 Linfeng_20120514_rIgG_6.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 588 2.25 0.00 0 36 100 2 515.30121 1029.59514 1.16 37.01 2742 2742 MS2 12/16 Linfeng_20120514_rIgG_10.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 512 2.26 0.00 0 6 100 2 651.33344 1301.65959 0.91 27.53 1657 1657 MS2 13/22 Linfeng_20120514_rIgG_2.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 538 2.27 0.00 0 4 100 2 651.33398 1301.66069 1.75 27.68 1655 1655 MS2 16/22 Linfeng_20120514_rIgG_3.raw High DAEEWFFTK Unambiguous 4 4 IPI00384444.6;IPI00789750.1;IPI00791156.1;IPI00792454.1 CID 1.0000 0.0000 1 1 187 2.31 0.00 0 25 100 2 586.76672 1172.52617 0.21 48.50 4852 4852 MS2 13/16 Linfeng_20120514_rIgG_2.raw High DAEEWFFTK Unambiguous 4 4 IPI00384444.6;IPI00789750.1;IPI00791156.1;IPI00792454.1 CID 1.0000 0.0000 1 1 190 2.39 0.00 0 18 100 2 586.76642 1172.52556 -0.31 48.59 4478 4478 MS2 13/16 Linfeng_20120514_rIgG_3.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 546 2.42 0.00 0 7 100 2 651.33398 1301.66069 1.75 27.72 1661 1661 MS2 16/22 Linfeng_20120514_rIgG_3.raw High TRLEQEIATYR Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 589 2.42 0.00 1 8 100 2 690.36853 1379.72978 1.44 35.74 2658 2658 MS2 12/20 Linfeng_20120514_rIgG_3.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 585 2.43 0.00 0 9 100 2 515.30194 1029.59661 2.59 36.87 2811 2811 MS2 15/16 Linfeng_20120514_rIgG_6.raw High TRLEQEIATYR Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 500 2.43 0.00 1 0 100 2 690.36963 1379.73198 3.03 36.40 2702 2702 MS2 11/20 Linfeng_20120514_rIgG_1.raw High LLEGEDAHLSSSQFSSGSQSSR Unambiguous 2 2 IPI00384444.6;IPI00792454.1 CID 1.0000 0.0000 1 1 362 2.52 0.00 0 9 100 3 770.36005 2309.06559 0.64 29.33 1870 1870 MS2 24/84 Linfeng_20120514_rIgG_2.raw High mSVEADINGLR Unambiguous 3 3 IPI00384444.6;IPI00789750.1;IPI00792454.1 M1(Oxidation) CID 1.0000 0.0000 1 1 516 2.52 0.00 0 45 100 2 610.80267 1220.59807 3.30 32.63 2178 2178 MS2 15/20 Linfeng_20120514_rIgG_1.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 547 2.56 0.00 0 6 100 2 651.33234 1301.65740 -0.78 25.32 1452 1452 MS2 15/22 Linfeng_20120514_rIgG_2.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 610 2.64 0.00 0 14 100 2 515.30127 1029.59526 1.28 37.53 3036 3036 MS2 15/16 Linfeng_20120514_rIgG_2.raw High DAEEWFFTK Unambiguous 4 4 IPI00384444.6;IPI00789750.1;IPI00791156.1;IPI00792454.1 CID 1.0000 0.0000 1 1 190 2.68 0.00 0 19 100 2 586.76666 1172.52605 0.11 48.48 4455 4455 MS2 13/16 Linfeng_20120514_rIgG_3.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 563 2.71 0.00 0 37 100 2 515.30139 1029.59551 1.52 37.08 2751 2751 MS2 12/16 Linfeng_20120514_rIgG_10.raw High DAEEWFFTK Unambiguous 4 4 IPI00384444.6;IPI00789750.1;IPI00791156.1;IPI00792454.1 CID 1.0000 0.0000 1 1 193 2.76 0.00 0 15 100 2 586.76733 1172.52739 1.25 48.60 4878 4878 MS2 13/16 Linfeng_20120514_rIgG_2.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 615 2.80 0.00 0 2 100 2 515.30182 1029.59636 2.35 36.94 2812 2812 MS2 15/16 Linfeng_20120514_rIgG_3.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 591 2.85 0.00 0 7 100 2 515.30109 1029.59490 0.93 38.00 2937 2937 MS2 14/16 Linfeng_20120514_rIgG_3.raw High TRLEQEIATYR Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 510 3.04 0.00 1 4 100 2 690.36951 1379.73174 2.85 36.20 2681 2681 MS2 15/20 Linfeng_20120514_rIgG_1.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 613 3.16 0.00 0 4 100 2 515.30206 1029.59685 2.82 37.77 2873 2873 MS2 14/16 Linfeng_20120514_rIgG_1.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 555 3.17 0.00 0 10 100 2 515.30255 1029.59783 3.77 36.74 2743 2743 MS2 15/16 Linfeng_20120514_rIgG_1.raw High LLEGEDAHLSSSQFSSGSQSSR Unambiguous 2 2 IPI00384444.6;IPI00792454.1 CID 1.0000 0.0000 1 1 366 3.30 0.00 0 6 100 3 770.35986 2309.06504 0.40 29.97 1942 1942 MS2 25/84 Linfeng_20120514_rIgG_2.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 603 3.44 0.00 0 5 100 2 515.30164 1029.59599 1.99 36.97 2816 2816 MS2 14/16 Linfeng_20120514_rIgG_3.raw High LLEGEDAHLSSSQFSSGSQSSR Unambiguous 2 2 IPI00384444.6;IPI00792454.1 CID 1.0000 0.0000 1 1 363 3.50 0.00 0 17 100 3 770.36060 2309.06723 1.35 29.46 1854 1854 MS2 27/84 Linfeng_20120514_rIgG_3.raw High GQVGGDVNVEmDAAPGVDLSR Unambiguous 4 4 IPI00384444.6;IPI00789750.1;IPI00791156.1;IPI00792454.1 M11(Oxidation) CID 1.0000 0.0000 1 1 292 4.15 0.00 0 0 100 2 1051.49707 2101.98686 2.31 33.02 2265 2265 MS2 22/40 Linfeng_20120514_rIgG_3.raw High LLEGEDAHLSSSQFSSGSQSSR Unambiguous 2 2 IPI00384444.6;IPI00792454.1 CID 1.0000 0.0000 1 1 375 4.27 0.00 0 18 100 3 770.36145 2309.06980 2.46 29.57 1867 1867 MS2 34/84 Linfeng_20120514_rIgG_3.raw IPI00290077.2 "Keratin, type I cytoskeletal 15" 7.02 1 0 3 27 66.20 7.02 3 27 0.00 456 49.2 4.77 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 578 2.02 0.00 0 40 100 2 515.30121 1029.59514 1.16 37.05 2747 2747 MS2 11/16 Linfeng_20120514_rIgG_10.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 597 2.03 0.00 0 28 100 2 515.30145 1029.59563 1.64 36.93 2876 2876 MS2 12/16 Linfeng_20120514_rIgG_8.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 512 2.06 0.00 0 5 100 2 651.33282 1301.65837 -0.03 25.69 1470 1470 MS2 11/22 Linfeng_20120514_rIgG_3.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 560 2.06 0.00 0 29 100 2 515.30127 1029.59526 1.28 37.49 2897 2897 MS2 10/16 Linfeng_20120514_rIgG_9.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 591 2.07 0.00 0 35 100 2 515.30133 1029.59538 1.40 37.57 2908 2908 MS2 12/16 Linfeng_20120514_rIgG_9.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 599 2.14 0.00 0 9 100 2 515.30164 1029.59599 1.99 37.07 2514 2514 MS2 10/16 Linfeng_20120514_rIgG_4.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 627 2.15 0.00 0 33 100 2 515.30115 1029.59502 1.05 38.36 3160 3160 MS2 15/16 Linfeng_20120514_rIgG_2.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 512 2.17 0.00 0 4 100 2 651.33337 1301.65947 0.81 27.49 1653 1653 MS2 15/22 Linfeng_20120514_rIgG_2.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 618 2.21 0.00 0 10 100 2 515.30182 1029.59636 2.35 36.82 2803 2803 MS2 14/16 Linfeng_20120514_rIgG_6.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 597 2.22 0.00 0 17 100 2 515.30212 1029.59697 2.94 37.13 2753 2753 MS2 13/16 Linfeng_20120514_rIgG_5.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 614 2.23 0.00 0 7 100 2 515.30170 1029.59612 2.11 37.88 2951 2951 MS2 13/16 Linfeng_20120514_rIgG_6.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 588 2.25 0.00 0 36 100 2 515.30121 1029.59514 1.16 37.01 2742 2742 MS2 12/16 Linfeng_20120514_rIgG_10.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 512 2.26 0.00 0 6 100 2 651.33344 1301.65959 0.91 27.53 1657 1657 MS2 13/22 Linfeng_20120514_rIgG_2.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 538 2.27 0.00 0 4 100 2 651.33398 1301.66069 1.75 27.68 1655 1655 MS2 16/22 Linfeng_20120514_rIgG_3.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 546 2.42 0.00 0 7 100 2 651.33398 1301.66069 1.75 27.72 1661 1661 MS2 16/22 Linfeng_20120514_rIgG_3.raw High TRLEQEIATYR Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 589 2.42 0.00 1 8 100 2 690.36853 1379.72978 1.44 35.74 2658 2658 MS2 12/20 Linfeng_20120514_rIgG_3.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 585 2.43 0.00 0 9 100 2 515.30194 1029.59661 2.59 36.87 2811 2811 MS2 15/16 Linfeng_20120514_rIgG_6.raw High TRLEQEIATYR Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 500 2.43 0.00 1 0 100 2 690.36963 1379.73198 3.03 36.40 2702 2702 MS2 11/20 Linfeng_20120514_rIgG_1.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 547 2.56 0.00 0 6 100 2 651.33234 1301.65740 -0.78 25.32 1452 1452 MS2 15/22 Linfeng_20120514_rIgG_2.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 610 2.64 0.00 0 14 100 2 515.30127 1029.59526 1.28 37.53 3036 3036 MS2 15/16 Linfeng_20120514_rIgG_2.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 563 2.71 0.00 0 37 100 2 515.30139 1029.59551 1.52 37.08 2751 2751 MS2 12/16 Linfeng_20120514_rIgG_10.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 615 2.80 0.00 0 2 100 2 515.30182 1029.59636 2.35 36.94 2812 2812 MS2 15/16 Linfeng_20120514_rIgG_3.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 591 2.85 0.00 0 7 100 2 515.30109 1029.59490 0.93 38.00 2937 2937 MS2 14/16 Linfeng_20120514_rIgG_3.raw High TRLEQEIATYR Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 510 3.04 0.00 1 4 100 2 690.36951 1379.73174 2.85 36.20 2681 2681 MS2 15/20 Linfeng_20120514_rIgG_1.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 613 3.16 0.00 0 4 100 2 515.30206 1029.59685 2.82 37.77 2873 2873 MS2 14/16 Linfeng_20120514_rIgG_1.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 555 3.17 0.00 0 10 100 2 515.30255 1029.59783 3.77 36.74 2743 2743 MS2 15/16 Linfeng_20120514_rIgG_1.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 603 3.44 0.00 0 5 100 2 515.30164 1029.59599 1.99 36.97 2816 2816 MS2 14/16 Linfeng_20120514_rIgG_3.raw IPI00217963.3 "Keratin, type I cytoskeletal 16" 12.68 1 1 5 44 88.84 12.68 5 34 27.78 7.82 3 10 473 51.2 5.05 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 578 2.02 0.00 0 40 100 2 515.30121 1029.59514 1.16 37.05 2747 2747 MS2 11/16 Linfeng_20120514_rIgG_10.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 597 2.03 0.00 0 28 100 2 515.30145 1029.59563 1.64 36.93 2876 2876 MS2 12/16 Linfeng_20120514_rIgG_8.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 512 2.06 0.00 0 5 100 2 651.33282 1301.65837 -0.03 25.69 1470 1470 MS2 11/22 Linfeng_20120514_rIgG_3.raw High DAETWFLSK Unambiguous 1 1 IPI00217963.3 CID 1.0000 0.0000 1 1 328 2.06 0.00 0 24 100 2 548.76923 1096.53118 0.16 45.91 3680 3680 MS2 11/16 Linfeng_20120515_BRCA1_4.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 560 2.06 0.00 0 29 100 2 515.30127 1029.59526 1.28 37.49 2897 2897 MS2 10/16 Linfeng_20120514_rIgG_9.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 591 2.07 0.00 0 35 100 2 515.30133 1029.59538 1.40 37.57 2908 2908 MS2 12/16 Linfeng_20120514_rIgG_9.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 599 2.14 0.00 0 9 100 2 515.30164 1029.59599 1.99 37.07 2514 2514 MS2 10/16 Linfeng_20120514_rIgG_4.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 627 2.15 0.00 0 33 100 2 515.30115 1029.59502 1.05 38.36 3160 3160 MS2 15/16 Linfeng_20120514_rIgG_2.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 448 2.15 0.00 0 7 100 2 515.30066 1029.59404 0.10 38.05 2810 2810 MS2 12/16 Linfeng_20120515_BRCA1_1.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 512 2.17 0.00 0 4 100 2 651.33337 1301.65947 0.81 27.49 1653 1653 MS2 15/22 Linfeng_20120514_rIgG_2.raw High DAETWFLSK Unambiguous 1 1 IPI00217963.3 CID 1.0000 0.0000 1 1 348 2.19 0.00 0 34 100 2 548.77008 1096.53288 1.72 45.41 4161 4161 MS2 12/16 Linfeng_20120514_rIgG_2.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 618 2.21 0.00 0 10 100 2 515.30182 1029.59636 2.35 36.82 2803 2803 MS2 14/16 Linfeng_20120514_rIgG_6.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 597 2.22 0.00 0 17 100 2 515.30212 1029.59697 2.94 37.13 2753 2753 MS2 13/16 Linfeng_20120514_rIgG_5.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 614 2.23 0.00 0 7 100 2 515.30170 1029.59612 2.11 37.88 2951 2951 MS2 13/16 Linfeng_20120514_rIgG_6.raw High IIAATIENAQPILQIDNAR Unambiguous 2 2 IPI00217963.3;IPI00789536.1 CID 1.0000 0.0000 1 1 215 2.24 0.00 0 6 100 2 1032.57593 2064.14458 -0.15 48.00 4357 4357 MS2 10/36 Linfeng_20120514_rIgG_3.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 588 2.25 0.00 0 36 100 2 515.30121 1029.59514 1.16 37.01 2742 2742 MS2 12/16 Linfeng_20120514_rIgG_10.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 512 2.26 0.00 0 6 100 2 651.33344 1301.65959 0.91 27.53 1657 1657 MS2 13/22 Linfeng_20120514_rIgG_2.raw High DAETWFLSK Unambiguous 1 1 IPI00217963.3 CID 1.0000 0.0000 1 1 334 2.27 0.00 0 30 100 2 548.76971 1096.53215 1.05 45.49 4175 4175 MS2 12/16 Linfeng_20120514_rIgG_2.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 538 2.27 0.00 0 4 100 2 651.33398 1301.66069 1.75 27.68 1655 1655 MS2 16/22 Linfeng_20120514_rIgG_3.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 546 2.42 0.00 0 7 100 2 651.33398 1301.66069 1.75 27.72 1661 1661 MS2 16/22 Linfeng_20120514_rIgG_3.raw High TRLEQEIATYR Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 589 2.42 0.00 1 8 100 2 690.36853 1379.72978 1.44 35.74 2658 2658 MS2 12/20 Linfeng_20120514_rIgG_3.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 585 2.43 0.00 0 9 100 2 515.30194 1029.59661 2.59 36.87 2811 2811 MS2 15/16 Linfeng_20120514_rIgG_6.raw High TRLEQEIATYR Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 500 2.43 0.00 1 0 100 2 690.36963 1379.73198 3.03 36.40 2702 2702 MS2 11/20 Linfeng_20120514_rIgG_1.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 608 2.44 0.00 0 31 100 2 515.30121 1029.59514 1.16 37.27 2608 2608 MS2 12/16 Linfeng_20120515_BRCA1_4.raw High DAETWFLSK Unambiguous 1 1 IPI00217963.3 CID 1.0000 0.0000 1 1 330 2.45 0.00 0 34 100 2 548.76953 1096.53179 0.72 45.54 4064 4064 MS2 12/16 Linfeng_20120514_rIgG_1.raw High DAETWFLSK Unambiguous 1 1 IPI00217963.3 CID 1.0000 0.0000 1 1 335 2.49 0.00 0 27 100 2 548.76910 1096.53093 -0.06 45.84 3663 3663 MS2 12/16 Linfeng_20120515_BRCA1_4.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 571 2.51 0.00 0 9 100 2 515.30115 1029.59502 1.05 37.05 2679 2679 MS2 13/16 Linfeng_20120515_BRCA1_1.raw High ALEEANADLEVK Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00873598.2 CID 1.0000 0.0000 1 1 547 2.56 0.00 0 6 100 2 651.33234 1301.65740 -0.78 25.32 1452 1452 MS2 15/22 Linfeng_20120514_rIgG_2.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 610 2.64 0.00 0 14 100 2 515.30127 1029.59526 1.28 37.53 3036 3036 MS2 15/16 Linfeng_20120514_rIgG_2.raw High DAETWFLSK Unambiguous 1 1 IPI00217963.3 CID 1.0000 0.0000 1 1 331 2.67 0.00 0 13 100 2 548.76910 1096.53093 -0.06 45.31 3764 3764 MS2 13/16 Linfeng_20120515_BRCA1_1.raw High DAETWFLSK Unambiguous 1 1 IPI00217963.3 CID 1.0000 0.0000 1 1 353 2.68 0.00 0 7 100 2 548.76886 1096.53044 -0.51 46.36 4009 4009 MS2 13/16 Linfeng_20120515_BRCA1_1.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 563 2.71 0.00 0 37 100 2 515.30139 1029.59551 1.52 37.08 2751 2751 MS2 12/16 Linfeng_20120514_rIgG_10.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 615 2.80 0.00 0 2 100 2 515.30182 1029.59636 2.35 36.94 2812 2812 MS2 15/16 Linfeng_20120514_rIgG_3.raw High DAETWFLSK Unambiguous 1 1 IPI00217963.3 CID 1.0000 0.0000 1 1 345 2.82 0.00 0 4 100 2 548.76880 1096.53032 -0.62 46.64 4076 4076 MS2 12/16 Linfeng_20120515_BRCA1_1.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 591 2.85 0.00 0 7 100 2 515.30109 1029.59490 0.93 38.00 2937 2937 MS2 14/16 Linfeng_20120514_rIgG_3.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 612 2.92 0.00 0 7 100 2 515.30127 1029.59526 1.28 37.00 2671 2671 MS2 14/16 Linfeng_20120515_BRCA1_1.raw High TRLEQEIATYR Unambiguous 7 7 IPI00009866.7;IPI00171196.2;IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 510 3.04 0.00 1 4 100 2 690.36951 1379.73174 2.85 36.20 2681 2681 MS2 15/20 Linfeng_20120514_rIgG_1.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 613 3.16 0.00 0 4 100 2 515.30206 1029.59685 2.82 37.77 2873 2873 MS2 14/16 Linfeng_20120514_rIgG_1.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 555 3.17 0.00 0 10 100 2 515.30255 1029.59783 3.77 36.74 2743 2743 MS2 15/16 Linfeng_20120514_rIgG_1.raw High VLDELTLAR Unambiguous 8 8 IPI00384444.6;IPI00217963.3;IPI00290077.2;IPI00789536.1;IPI00789750.1;IPI00791156.1;IPI00792454.1;IPI00873598.2 CID 1.0000 0.0000 1 1 603 3.44 0.00 0 5 100 2 515.30164 1029.59599 1.99 36.97 2816 2816 MS2 14/16 Linfeng_20120514_rIgG_3.raw High IIAATIENAQPILQIDNAR Unambiguous 2 2 IPI00217963.3;IPI00789536.1 CID 1.0000 0.0000 1 1 179 4.26 0.00 0 0 100 2 1032.57739 2064.14751 1.27 47.69 4575 4575 MS2 19/36 Linfeng_20120514_rIgG_1.raw High IIAATIENAQPILQIDNAR Unambiguous 2 2 IPI00217963.3;IPI00789536.1 CID 1.0000 0.0000 1 1 231 4.51 0.00 0 37 100 3 688.72028 2064.14627 0.67 47.67 4569 4569 MS2 31/72 Linfeng_20120514_rIgG_1.raw High IIAATIENAQPILQIDNAR Unambiguous 2 2 IPI00217963.3;IPI00789536.1 CID 1.0000 0.0000 1 1 183 4.71 0.00 0 0 100 2 1032.57776 2064.14824 1.63 47.63 4561 4561 MS2 17/36 Linfeng_20120514_rIgG_1.raw High IIAATIENAQPILQIDNAR Unambiguous 2 2 IPI00217963.3;IPI00789536.1 CID 1.0000 0.0000 1 1 188 5.04 0.00 0 0 100 2 1032.57605 2064.14482 -0.03 47.90 4372 4372 MS2 19/36 Linfeng_20120515_BRCA1_1.raw IPI00019359.4 "Keratin, type I cytoskeletal 9" 60.35 1 30 30 471 1160.54 56.66 28 322 514.02 41.57 19 149 623 62.0 5.24 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High KGPAAIQK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 169 2.01 0.00 1 3 100 2 406.75305 812.49883 -0.10 12.56 708 708 MS2 12/14 Linfeng_20120514_rIgG_10.raw High MTLDDFR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 218 2.02 0.00 0 15 100 2 449.21161 897.41594 2.69 35.13 2511 2511 MS2 11/12 Linfeng_20120514_rIgG_10.raw High MTLDDFR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 205 2.02 0.00 0 54 100 2 449.21060 897.41393 0.44 34.69 2740 2740 MS2 11/12 Linfeng_20120515_BRCA1_5.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 628 2.02 0.00 0 2 100 2 530.78656 1060.56584 2.34 31.96 1926 1926 MS2 11/16 Linfeng_20120515_BRCA1_9.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 751 2.02 0.00 0 37 100 2 530.78668 1060.56609 2.57 31.50 1819 1819 MS2 11/16 Linfeng_20120515_BRCA1_4.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 630 2.02 0.00 0 20 100 2 530.78534 1060.56340 0.04 33.56 2515 2515 MS2 11/16 Linfeng_20120515_BRCA1_8.raw High QVLDNLTMEK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 476 2.04 0.00 0 4 100 2 595.80957 1190.61186 2.73 32.32 2186 2186 MS2 11/18 Linfeng_20120515_BRCA1_10.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 669 2.04 0.00 0 5 100 2 530.78656 1060.56584 2.34 32.17 1987 1987 MS2 12/16 Linfeng_20120515_BRCA1_1.raw High MTLDDFR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 228 2.05 0.00 0 33 100 2 449.21210 897.41692 3.77 34.25 2187 2187 MS2 10/12 Linfeng_20120514_rIgG_4.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 676 2.06 0.00 0 5 100 2 530.78625 1060.56523 1.76 32.05 1936 1936 MS2 12/16 Linfeng_20120515_BRCA1_9.raw High IKFEMEQNLR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 559 2.06 0.00 1 1 100 2 654.34381 1307.68035 2.02 37.09 2830 2830 MS2 11/18 Linfeng_20120514_rIgG_3.raw High NYSPYYNTIDDLK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 371 2.06 0.00 0 21 100 2 803.37708 1605.74687 2.32 39.49 3307 3307 MS2 13/24 Linfeng_20120514_rIgG_2.raw High QGVDADINGLR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 490 2.07 0.00 0 0 100 2 579.29926 1157.59123 0.21 27.51 1595 1595 MS2 14/20 Linfeng_20120514_rIgG_1.raw High MTLDDFR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 230 2.07 0.00 0 19 100 2 449.21152 897.41576 2.48 35.13 2317 2317 MS2 11/12 Linfeng_20120515_BRCA1_7.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 643 2.07 0.00 0 25 100 2 530.78644 1060.56560 2.11 33.83 2336 2336 MS2 11/16 Linfeng_20120514_rIgG_1.raw High MTLDDFR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 233 2.08 0.00 0 30 100 2 449.21201 897.41673 3.57 35.27 2314 2314 MS2 11/12 Linfeng_20120514_rIgG_4.raw High QVLDNLTmEK Unambiguous 1 1 IPI00019359.4 M8(Oxidation) CID 1.0000 0.0000 1 1 529 2.08 0.00 0 22 100 2 603.80518 1206.60307 -0.37 31.76 2160 2160 MS2 11/18 Linfeng_20120514_rIgG_2.raw High MTLDDFR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 218 2.08 0.00 0 41 100 2 449.21170 897.41612 2.89 34.78 2188 2188 MS2 10/12 Linfeng_20120515_BRCA1_6.raw High QGVDADINGLR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 363 2.09 0.00 0 0 100 2 579.29846 1157.58965 -1.16 26.50 1498 1498 MS2 9/20 Linfeng_20120514_rIgG_1.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 708 2.09 0.00 0 4 54 2 530.78687 1060.56645 2.92 32.32 2185 2185 MS2 15/16 Linfeng_20120515_BRCA1_10.raw High QVLDNLTMEK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 593 2.10 0.00 0 3 100 2 595.80823 1190.60918 0.48 32.71 2297 2297 MS2 13/18 Linfeng_20120514_rIgG_2.raw High IKFEMEQNLR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 516 2.11 0.00 1 1 100 2 654.34412 1307.68096 2.49 36.24 2422 2422 MS2 12/18 Linfeng_20120514_rIgG_4.raw High VQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 421 2.11 0.00 0 5 100 2 793.88654 1586.76579 0.04 27.07 1575 1575 MS2 15/26 Linfeng_20120514_rIgG_8.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 599 2.12 0.00 1 8 100 2 926.46710 1851.92693 -0.04 48.36 4429 4429 MS2 14/28 Linfeng_20120514_rIgG_3.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 29 2.13 0.00 0 0 100 2 896.36694 1791.72661 -0.66 14.66 822 822 MS2 16/44 Linfeng_20120514_rIgG_7.raw High MTLDDFR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 195 2.13 0.00 0 38 100 2 449.21109 897.41490 1.53 34.32 2171 2171 MS2 11/12 Linfeng_20120514_rIgG_7.raw High IKFEMEQNLR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 502 2.14 0.00 1 21 100 2 654.34460 1307.68193 3.24 35.59 2368 2368 MS2 12/18 Linfeng_20120515_BRCA1_4.raw High QVLDNLTmEK Unambiguous 1 1 IPI00019359.4 M8(Oxidation) CID 1.0000 0.0000 1 1 595 2.14 0.00 0 22 100 2 603.80627 1206.60527 1.45 31.53 2127 2127 MS2 13/18 Linfeng_20120514_rIgG_2.raw High IKFEMEQNLR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 478 2.15 0.00 1 7 100 2 654.34473 1307.68218 3.42 36.36 2490 2490 MS2 13/18 Linfeng_20120515_BRCA1_7.raw High QVLDNLTMEK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 543 2.15 0.00 0 4 76 2 595.80957 1190.61186 2.73 31.97 2119 2119 MS2 13/18 Linfeng_20120514_rIgG_3.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 711 2.15 0.00 0 14 100 2 530.78638 1060.56548 2.00 31.93 1815 1815 MS2 14/16 Linfeng_20120515_BRCA1_2.raw High MTLDDFR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 214 2.15 0.00 0 35 100 2 449.21155 897.41582 2.55 36.06 2444 2444 MS2 10/12 Linfeng_20120515_BRCA1_7.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 685 2.15 0.00 0 19 100 2 530.78668 1060.56609 2.57 31.79 1796 1796 MS2 13/16 Linfeng_20120515_BRCA1_2.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 637 2.16 0.00 0 16 100 2 530.78632 1060.56536 1.88 31.86 1806 1806 MS2 13/16 Linfeng_20120515_BRCA1_2.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 675 2.16 0.00 0 3 100 2 530.78632 1060.56536 1.88 32.11 1942 1942 MS2 11/16 Linfeng_20120515_BRCA1_9.raw High KGPAAIQK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 171 2.16 0.00 1 4 100 2 406.75275 812.49822 -0.86 12.54 707 707 MS2 14/14 Linfeng_20120514_rIgG_3.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 671 2.17 0.00 0 5 100 2 530.78705 1060.56682 3.26 33.06 2034 2034 MS2 12/16 Linfeng_20120514_rIgG_4.raw High IKFEMEQNLR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 502 2.18 0.00 1 12 100 2 654.34344 1307.67961 1.46 36.35 2408 2408 MS2 12/18 Linfeng_20120515_BRCA1_6.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 720 2.20 0.00 0 28 100 2 530.78607 1060.56487 1.42 33.91 2369 2369 MS2 11/16 Linfeng_20120514_rIgG_8.raw High IKFEMEQNLR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 517 2.21 0.00 1 0 100 2 654.34412 1307.68096 2.49 37.81 3079 3079 MS2 11/18 Linfeng_20120514_rIgG_2.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 669 2.22 0.00 0 16 100 2 530.78571 1060.56413 0.73 34.99 2561 2561 MS2 13/16 Linfeng_20120514_rIgG_3.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 740 2.22 0.00 0 32 100 2 530.78650 1060.56572 2.23 34.24 2159 2159 MS2 11/16 Linfeng_20120514_rIgG_7.raw High VQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 455 2.23 0.00 0 9 100 2 793.88623 1586.76518 -0.34 26.63 1469 1469 MS2 19/26 Linfeng_20120515_BRCA1_9.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 695 2.23 0.00 0 5 35 2 530.78674 1060.56621 2.69 32.94 2252 2252 MS2 14/16 Linfeng_20120514_rIgG_3.raw High KGPAAIQK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 169 2.23 0.00 1 4 100 2 406.75385 812.50041 1.85 12.62 700 700 MS2 11/14 Linfeng_20120514_rIgG_1.raw High FSSSGGGGGGGR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 177 2.24 0.00 0 1 100 2 491.71982 982.43236 -1.43 12.56 711 711 MS2 15/22 Linfeng_20120514_rIgG_3.raw High QGVDADINGLR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 404 2.24 0.00 0 1 100 2 579.29858 1157.58989 -0.95 27.42 1540 1540 MS2 12/20 Linfeng_20120514_rIgG_6.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 673 2.25 0.00 0 3 100 2 530.78595 1060.56462 1.19 33.22 2018 2018 MS2 13/16 Linfeng_20120514_rIgG_7.raw High QVLDNLTMEK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 562 2.25 0.00 0 7 100 2 595.80939 1190.61150 2.42 32.55 2165 2165 MS2 13/18 Linfeng_20120514_rIgG_1.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 688 2.26 0.00 0 7 100 2 530.78650 1060.56572 2.23 32.57 1885 1885 MS2 12/16 Linfeng_20120515_BRCA1_6.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 694 2.28 0.00 0 6 100 2 530.78650 1060.56572 2.23 33.02 1906 1906 MS2 13/16 Linfeng_20120515_BRCA1_2.raw High QVLDNLTMEK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 528 2.28 0.00 0 2 100 2 595.80969 1190.61211 2.94 32.48 1964 1964 MS2 14/18 Linfeng_20120514_rIgG_4.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 677 2.28 0.00 0 4 100 2 530.78680 1060.56633 2.80 32.18 1947 1947 MS2 14/16 Linfeng_20120514_rIgG_5.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 670 2.28 0.00 0 3 96 2 530.78625 1060.56523 1.76 31.56 1978 1978 MS2 13/16 Linfeng_20120514_rIgG_10.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 627 2.29 0.00 0 12 100 2 530.78534 1060.56340 0.04 33.44 2146 2146 MS2 11/16 Linfeng_20120514_rIgG_5.raw High VQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 418 2.30 0.00 0 0 100 2 793.88623 1586.76518 -0.34 26.26 1553 1553 MS2 18/26 Linfeng_20120515_BRCA1_5.raw High IKFEMEQNLR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 532 2.30 0.00 1 2 100 2 654.34424 1307.68120 2.68 36.08 2662 2662 MS2 14/18 Linfeng_20120514_rIgG_1.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 697 2.30 0.00 0 30 100 2 530.78668 1060.56609 2.57 31.59 1777 1777 MS2 11/16 Linfeng_20120515_BRCA1_2.raw High VQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 398 2.31 0.00 0 4 100 2 793.88611 1586.76494 -0.50 26.04 1442 1442 MS2 18/26 Linfeng_20120515_BRCA1_1.raw Medium TLNDmRQEYEQLIAK Unambiguous 1 1 IPI00019359.4 M5(Oxidation) CID 1.0000 0.0000 1 1 550 2.32 0.00 1 12 100 3 623.31226 1867.92221 0.16 35.59 2749 2749 MS2 20/56 Linfeng_20120514_rIgG_2.raw Medium SDLEmQYETLQEELmALKK Unambiguous 1 1 IPI00019359.4 M5(Oxidation); M15(Oxidation) CID 1.0000 0.0000 1 1 473 2.32 0.00 1 8 8 3 777.70703 2331.10654 -1.29 48.97 4447 4447 MS2 16/72 Linfeng_20120514_rIgG_4.raw Medium TLNDMRQEYEQLIAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 638 2.32 0.00 1 24 100 3 617.98047 1851.92685 -0.08 47.76 4180 4180 MS2 22/56 Linfeng_20120514_rIgG_10.raw Medium IKFEMEQNLR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 570 2.34 0.00 1 23 100 3 436.56500 1307.68045 2.11 36.19 2760 2760 MS2 18/36 Linfeng_20120514_rIgG_8.raw Medium DIENQYETQITQIEHEVSSSGQEVQSSAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 387 2.35 0.00 0 0 10 3 1088.83984 3264.50498 -2.75 48.94 4436 4436 MS2 21/112 Linfeng_20120514_rIgG_4.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 569 2.35 0.00 0 5 100 2 530.78644 1060.56560 2.11 32.12 2082 2082 MS2 12/16 Linfeng_20120514_rIgG_8.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 701 2.35 0.00 0 6 100 2 530.78687 1060.56645 2.92 33.32 2352 2352 MS2 13/16 Linfeng_20120515_BRCA1_10.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 705 2.35 0.00 0 8 100 2 530.78583 1060.56438 0.96 33.71 2455 2455 MS2 14/16 Linfeng_20120514_rIgG_2.raw Medium TLNDmRQEYEQLIAK Unambiguous 1 1 IPI00019359.4 M5(Oxidation) CID 1.0000 0.0000 1 1 545 2.36 0.00 1 3 100 3 623.31329 1867.92533 1.83 36.68 2531 2531 MS2 24/56 Linfeng_20120515_BRCA1_7.raw High VQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 449 2.36 0.00 0 2 100 2 793.88525 1586.76323 -1.58 26.00 1435 1435 MS2 18/26 Linfeng_20120515_BRCA1_7.raw High IKFEMEQNLR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 506 2.38 0.00 1 2 90 2 654.34375 1307.68022 1.93 36.08 2708 2708 MS2 14/18 Linfeng_20120514_rIgG_3.raw Medium TLNDMRQEYEQLIAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 612 2.39 0.00 1 24 42 3 617.98120 1851.92905 1.11 48.10 4751 4751 MS2 27/56 Linfeng_20120514_rIgG_2.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 726 2.39 0.00 0 19 100 2 530.78650 1060.56572 2.23 30.79 1947 1947 MS2 12/16 Linfeng_20120514_rIgG_1.raw High MTLDDFR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 204 2.39 0.00 0 58 100 2 449.21097 897.41466 1.26 34.19 2359 2359 MS2 10/12 Linfeng_20120514_rIgG_6.raw High TLNDmRQEYEQLIAK Unambiguous 1 1 IPI00019359.4 M5(Oxidation) CID 1.0000 0.0000 1 1 505 2.40 0.00 1 15 100 2 934.46808 1867.92888 3.73 36.14 2611 2611 MS2 14/28 Linfeng_20120514_rIgG_5.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 667 2.40 0.00 0 4 87 2 530.78632 1060.56536 1.88 32.21 1912 1912 MS2 13/16 Linfeng_20120514_rIgG_7.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 636 2.40 0.00 0 7 29 2 530.78577 1060.56426 0.84 31.70 2150 2150 MS2 13/16 Linfeng_20120514_rIgG_2.raw Medium IKFEMEQNLR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 554 2.40 0.00 1 10 100 3 436.56522 1307.68109 2.60 35.96 2673 2673 MS2 16/36 Linfeng_20120514_rIgG_9.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 724 2.41 0.00 0 21 100 2 530.78638 1060.56548 2.00 32.05 2146 2146 MS2 13/16 Linfeng_20120515_BRCA1_5.raw High VQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 398 2.41 0.00 0 0 100 2 793.88599 1586.76470 -0.65 26.24 1432 1432 MS2 17/26 Linfeng_20120515_BRCA1_2.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 676 2.41 0.00 0 8 100 2 530.78644 1060.56560 2.11 33.19 2101 2101 MS2 11/16 Linfeng_20120515_BRCA1_1.raw High QVLDNLTMEK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 623 2.41 0.00 0 6 100 2 595.80963 1190.61199 2.83 32.99 2260 2260 MS2 12/18 Linfeng_20120514_rIgG_3.raw Medium IKFEMEQNLR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 554 2.43 0.00 1 17 100 3 436.56561 1307.68229 3.51 36.28 2550 2550 MS2 17/36 Linfeng_20120515_BRCA1_9.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 662 2.44 0.00 0 7 100 2 530.78638 1060.56548 2.00 31.84 1914 1914 MS2 13/16 Linfeng_20120515_BRCA1_9.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 552 2.44 0.00 0 4 24 2 530.78674 1060.56621 2.69 31.94 2113 2113 MS2 11/16 Linfeng_20120514_rIgG_3.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 639 2.44 0.00 0 2 64 2 530.78668 1060.56609 2.57 32.04 1916 1916 MS2 14/16 Linfeng_20120514_rIgG_4.raw Medium IKFEMEQNLR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 556 2.45 0.00 1 10 100 3 436.56549 1307.68192 3.23 35.83 2651 2651 MS2 20/36 Linfeng_20120514_rIgG_9.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 585 2.45 0.00 0 6 44 2 530.78558 1060.56389 0.50 32.70 2296 2296 MS2 13/16 Linfeng_20120514_rIgG_2.raw High IKFEMEQNLR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 505 2.46 0.00 1 2 100 2 654.34271 1307.67815 0.34 35.77 2784 2784 MS2 15/18 Linfeng_20120514_rIgG_2.raw Medium IKFEMEQNLR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 555 2.46 0.00 1 7 100 3 436.56534 1307.68146 2.88 36.04 2686 2686 MS2 22/36 Linfeng_20120514_rIgG_6.raw High VQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 463 2.46 0.00 0 15 100 2 793.88727 1586.76726 0.96 27.53 1602 1602 MS2 15/26 Linfeng_20120515_BRCA1_10.raw Medium LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 608 2.46 0.00 1 10 100 3 793.06897 2377.19236 1.72 47.45 3417 3417 MS2 23/80 Linfeng_20120515_BRCA1_2.raw Medium TLNDMRQEYEQLIAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 619 2.46 0.00 1 28 100 3 617.98096 1851.92832 0.71 47.85 4612 4612 MS2 18/56 Linfeng_20120514_rIgG_1.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 698 2.46 0.00 0 9 100 2 530.78650 1060.56572 2.23 33.97 2409 2409 MS2 15/16 Linfeng_20120514_rIgG_3.raw High QVLDNLTMEK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 621 2.46 0.00 0 9 100 2 595.80847 1190.60967 0.89 30.68 2029 2029 MS2 11/18 Linfeng_20120514_rIgG_2.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 714 2.47 0.00 0 2 100 2 530.78650 1060.56572 2.23 31.90 1921 1921 MS2 12/16 Linfeng_20120515_BRCA1_9.raw Medium TLNDMRQEYEQLIAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 619 2.47 0.00 1 8 70 3 617.98022 1851.92612 -0.48 48.37 4826 4826 MS2 25/56 Linfeng_20120515_BRCA1_10.raw High DQIVDLTVGNNK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 571 2.47 0.00 0 30 100 2 658.34821 1315.68913 2.93 32.38 2038 2038 MS2 13/22 Linfeng_20120514_rIgG_6.raw Medium IKFEMEQNLR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 554 2.48 0.00 1 22 88 3 436.56555 1307.68210 3.37 36.67 2952 2952 MS2 18/36 Linfeng_20120515_BRCA1_10.raw High QVLDNLTMEK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 510 2.49 0.00 0 2 100 2 595.80920 1190.61113 2.12 31.52 2040 2040 MS2 11/18 Linfeng_20120514_rIgG_1.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 658 2.50 0.00 0 32 100 2 530.78522 1060.56316 -0.19 33.42 2481 2481 MS2 12/16 Linfeng_20120515_BRCA1_8.raw High QVLDNLTMEK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 570 2.51 0.00 0 2 100 2 595.80927 1190.61125 2.22 31.34 2013 2013 MS2 11/18 Linfeng_20120514_rIgG_1.raw High IKFEMEQNLR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 570 2.51 0.00 1 24 82 3 436.56500 1307.68045 2.11 37.20 2842 2842 MS2 19/36 Linfeng_20120514_rIgG_3.raw Medium NHKEEMSQLTGQNSGDVNVEINVAPGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 578 2.51 0.00 1 11 100 4 724.60400 2895.39419 1.36 35.91 2687 2687 MS2 26/156 Linfeng_20120514_rIgG_3.raw High IKFEMEQNLR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 575 2.52 0.00 1 8 100 3 436.56461 1307.67926 1.19 35.83 2988 2988 MS2 19/36 Linfeng_20120515_BRCA1_5.raw High IKFEmEQNLR Unambiguous 1 1 IPI00019359.4 M5(Oxidation) CID 1.0000 0.0000 1 1 555 2.52 0.00 1 20 100 3 441.89655 1323.67508 1.86 36.29 2735 2735 MS2 20/36 Linfeng_20120514_rIgG_3.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 689 2.52 0.00 0 4 97 2 530.78619 1060.56511 1.65 32.81 2202 2202 MS2 13/16 Linfeng_20120514_rIgG_1.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 590 2.52 0.00 0 4 52 2 530.78632 1060.56536 1.88 32.40 1943 1943 MS2 11/16 Linfeng_20120515_BRCA1_7.raw High IKFEMEQNLR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 570 2.53 0.00 1 7 100 3 436.56500 1307.68045 2.11 36.12 2385 2385 MS2 17/36 Linfeng_20120514_rIgG_7.raw Medium NHKEEMSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 477 2.53 0.00 2 3 100 4 838.91797 3352.65005 1.82 38.29 2664 2664 MS2 40/180 Linfeng_20120514_rIgG_4.raw Medium KDIENQYETQITQIEHEVSSSGQEVQSSAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 437 2.54 0.00 1 32 89 4 848.90753 3392.60830 -0.19 48.49 4737 4737 MS2 33/174 Linfeng_20120514_rIgG_6.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 618 2.54 0.00 1 8 56 3 617.98016 1851.92594 -0.57 48.18 4281 4281 MS2 26/56 Linfeng_20120514_rIgG_10.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 692 2.54 0.00 0 14 100 2 530.78619 1060.56511 1.65 32.95 1957 1957 MS2 12/16 Linfeng_20120515_BRCA1_3.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 719 2.55 0.00 0 2 100 2 530.78644 1060.56560 2.11 33.58 2281 2281 MS2 14/16 Linfeng_20120514_rIgG_10.raw High QVLDNLTMEK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 568 2.56 0.00 0 3 52 2 595.80865 1190.61003 1.19 31.70 2151 2151 MS2 15/18 Linfeng_20120514_rIgG_2.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 672 2.56 0.00 0 6 100 2 530.78644 1060.56560 2.11 33.12 2067 2067 MS2 13/16 Linfeng_20120515_BRCA1_9.raw High SDLEmQYETLQEELMALKK Unambiguous 1 1 IPI00019359.4 M5(Oxidation) CID 1.0000 0.0000 1 1 550 2.57 0.00 1 3 6 3 772.37671 2315.11557 0.40 48.97 4581 4581 MS2 23/72 Linfeng_20120514_rIgG_3.raw High DQIVDLTVGNNK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 634 2.57 0.00 0 24 100 2 658.34778 1315.68828 2.28 32.45 1916 1916 MS2 15/22 Linfeng_20120515_BRCA1_4.raw High VQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 454 2.60 0.00 0 4 100 2 793.88544 1586.76360 -1.34 26.23 1461 1461 MS2 15/26 Linfeng_20120514_rIgG_9.raw High IKFEMEQNLR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 564 2.60 0.00 1 27 100 3 436.56476 1307.67972 1.54 34.74 2628 2628 MS2 17/36 Linfeng_20120514_rIgG_2.raw Medium KDIENQYETQITQIEHEVSSSGQEVQSSAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 414 2.61 0.00 1 4 100 4 848.90686 3392.60561 -0.98 48.49 4315 4315 MS2 34/174 Linfeng_20120515_BRCA1_9.raw High DIENQYETQITQIEHEVSSSGQEVQSSAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 388 2.61 0.00 0 1 4 3 1088.83972 3264.50461 -2.87 48.91 4982 4982 MS2 22/112 Linfeng_20120515_BRCA1_10.raw High DQIVDLTVGNNK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 605 2.61 0.00 0 15 100 2 658.34766 1315.68804 2.09 32.50 1925 1925 MS2 12/22 Linfeng_20120515_BRCA1_4.raw High DQIVDLTVGNNK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 614 2.62 0.00 0 14 100 2 658.34778 1315.68828 2.28 32.46 2016 2016 MS2 15/22 Linfeng_20120515_BRCA1_1.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 692 2.62 0.00 0 5 100 2 530.78601 1060.56474 1.30 33.59 2010 2010 MS2 14/16 Linfeng_20120515_BRCA1_6.raw High DQIVDLTVGNNK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 602 2.62 0.00 0 7 100 2 658.34772 1315.68816 2.19 32.32 2091 2091 MS2 15/22 Linfeng_20120514_rIgG_10.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 618 2.63 0.00 0 13 100 2 530.78760 1060.56792 4.30 32.39 2274 2274 MS2 13/16 Linfeng_20120515_BRCA1_8.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 691 2.64 0.00 0 5 100 2 530.78571 1060.56413 0.73 33.19 2215 2215 MS2 14/16 Linfeng_20120514_rIgG_9.raw Medium NHKEEMSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 495 2.64 0.00 2 31 100 4 838.91998 3352.65810 4.23 56.71 6120 6120 MS2 32/180 Linfeng_20120514_rIgG_2.raw High QGVDADINGLR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 436 2.64 0.00 0 0 100 2 579.29962 1157.59197 0.84 27.70 1553 1553 MS2 12/20 Linfeng_20120514_rIgG_4.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 684 2.64 0.00 0 3 100 2 530.78625 1060.56523 1.76 33.43 2072 2072 MS2 13/16 Linfeng_20120515_BRCA1_7.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 712 2.65 0.00 0 4 100 2 530.78662 1060.56597 2.46 32.17 2086 2086 MS2 13/16 Linfeng_20120514_rIgG_9.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 706 2.65 0.00 0 4 98 2 530.78638 1060.56548 2.00 32.52 1927 1927 MS2 15/16 Linfeng_20120515_BRCA1_4.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 634 2.66 0.00 1 4 100 2 926.46759 1851.92790 0.49 48.07 4745 4745 MS2 16/28 Linfeng_20120514_rIgG_2.raw High YcGQLQmIQEQISNLEAQITDVR Unambiguous 1 1 IPI00019359.4 C2(Carbamidomethyl); M7(Oxidation) CID 1.0000 0.0000 1 1 525 2.66 0.00 0 0 4 3 918.44525 2753.32120 -0.80 49.06 4481 4481 MS2 20/88 Linfeng_20120515_BRCA1_4.raw Medium VQALEEANNDLENKIQDWYDKK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 507 2.67 0.00 2 9 86 4 666.57922 2663.29506 0.08 48.38 4278 4278 MS2 35/126 Linfeng_20120514_rIgG_4.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 607 2.67 0.00 1 8 90 3 617.98016 1851.92594 -0.57 48.34 4733 4733 MS2 22/56 Linfeng_20120514_rIgG_1.raw High TLNDmRQEYEQLIAK Unambiguous 1 1 IPI00019359.4 M5(Oxidation) CID 1.0000 0.0000 1 1 559 2.68 0.00 1 2 100 3 623.31384 1867.92698 2.71 36.71 2785 2785 MS2 23/56 Linfeng_20120514_rIgG_3.raw High VQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 456 2.68 0.00 0 0 100 2 793.88513 1586.76299 -1.73 26.32 1452 1452 MS2 21/26 Linfeng_20120515_BRCA1_6.raw High SDLEmQYETLQEELMALKK Unambiguous 1 1 IPI00019359.4 M5(Oxidation) CID 1.0000 0.0000 1 1 533 2.69 0.00 1 8 4 3 772.37543 2315.11173 -1.26 48.99 4999 4999 MS2 24/72 Linfeng_20120514_rIgG_2.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 618 2.71 0.00 0 7 100 2 530.78558 1060.56389 0.50 33.13 2142 2142 MS2 13/16 Linfeng_20120514_rIgG_6.raw Medium NHKEEMSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 473 2.72 0.00 2 17 100 4 838.91907 3352.65444 3.13 56.82 6146 6146 MS2 33/180 Linfeng_20120514_rIgG_2.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 622 2.72 0.00 1 12 100 3 617.98096 1851.92832 0.71 47.74 4673 4673 MS2 28/56 Linfeng_20120515_BRCA1_10.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 703 2.73 0.00 0 7 100 2 530.78638 1060.56548 2.00 32.10 1995 1995 MS2 15/16 Linfeng_20120514_rIgG_6.raw High VQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 428 2.74 0.00 0 0 100 2 793.88593 1586.76457 -0.73 26.06 1472 1472 MS2 19/26 Linfeng_20120514_rIgG_8.raw High IKFEMEQNLR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 580 2.74 0.00 1 23 100 3 436.56479 1307.67981 1.62 37.36 2862 2862 MS2 22/36 Linfeng_20120514_rIgG_3.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 693 2.77 0.00 0 3 51 2 530.78644 1060.56560 2.11 31.80 2077 2077 MS2 14/16 Linfeng_20120514_rIgG_1.raw Medium KDIENQYETQITQIEHEVSSSGQEVQSSAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 414 2.78 0.00 1 82 100 4 848.90698 3392.60610 -0.84 48.38 4074 4074 MS2 34/174 Linfeng_20120514_rIgG_7.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 675 2.78 0.00 0 3 70 2 530.78674 1060.56621 2.69 32.57 2124 2124 MS2 13/16 Linfeng_20120514_rIgG_10.raw High QGVDADINGLR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 500 2.78 0.00 0 3 100 2 579.29919 1157.59111 0.10 27.31 1628 1628 MS2 15/20 Linfeng_20120514_rIgG_2.raw High IKFEMEQNLR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 555 2.79 0.00 1 25 74 3 436.56516 1307.68091 2.46 37.15 2835 2835 MS2 21/36 Linfeng_20120514_rIgG_3.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 721 2.79 0.00 0 34 100 2 530.78461 1060.56194 -1.34 33.08 2347 2347 MS2 15/16 Linfeng_20120515_BRCA1_5.raw High SDLEmQYETLQEELmALKK Unambiguous 1 1 IPI00019359.4 M5(Oxidation); M15(Oxidation) CID 1.0000 0.0000 1 1 483 2.80 0.00 1 2 3 3 777.70734 2331.10746 -0.90 48.95 4437 4437 MS2 20/72 Linfeng_20120515_BRCA1_4.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 208 2.81 0.00 0 28 100 3 837.38269 2510.13352 0.66 41.13 3642 3642 MS2 25/88 Linfeng_20120515_BRCA1_8.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 624 2.82 0.00 1 6 64 3 617.98047 1851.92685 -0.08 48.28 4482 4482 MS2 26/56 Linfeng_20120514_rIgG_9.raw High VQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 440 2.82 0.00 0 6 100 2 793.88605 1586.76482 -0.58 25.92 1437 1437 MS2 19/26 Linfeng_20120514_rIgG_4.raw High HGVQELEIELQSQLSKK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 380 2.83 0.00 1 38 100 3 656.02710 1966.06675 3.20 55.96 5316 5316 MS2 16/64 Linfeng_20120514_rIgG_3.raw High SDLEmQYETLQEELMALKK Unambiguous 1 1 IPI00019359.4 M5(Oxidation) CID 1.0000 0.0000 1 1 539 2.83 0.00 1 4 3 3 772.37708 2315.11667 0.88 48.96 4353 4353 MS2 25/72 Linfeng_20120515_BRCA1_7.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 30 2.84 0.00 0 4 100 2 896.36707 1791.72685 -0.53 13.89 785 785 MS2 22/44 Linfeng_20120514_rIgG_9.raw High IKFEMEQNLR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 555 2.84 0.00 1 25 58 3 436.56512 1307.68082 2.39 36.95 2814 2814 MS2 20/36 Linfeng_20120514_rIgG_3.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 598 2.84 0.00 1 5 100 2 926.46649 1851.92571 -0.70 48.32 4316 4316 MS2 17/28 Linfeng_20120514_rIgG_10.raw High TLLDIDNTR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 723 2.84 0.00 0 5 100 2 530.78705 1060.56682 3.26 33.53 2071 2071 MS2 13/16 Linfeng_20120515_BRCA1_4.raw High VQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 411 2.85 0.00 0 2 100 2 793.88556 1586.76384 -1.19 26.05 1441 1441 MS2 19/26 Linfeng_20120514_rIgG_7.raw High QGVDADINGLR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 425 2.86 0.00 0 3 100 2 579.29993 1157.59258 1.37 27.54 1637 1637 MS2 16/20 Linfeng_20120514_rIgG_3.raw High IKFEMEQNLR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 570 2.86 0.00 1 25 76 3 436.56509 1307.68073 2.32 37.09 2829 2829 MS2 19/36 Linfeng_20120514_rIgG_3.raw Medium NHKEEMSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 504 2.87 0.00 2 43 100 4 838.92175 3352.66518 6.34 56.84 5613 5613 MS2 33/180 Linfeng_20120514_rIgG_5.raw High VQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 431 2.87 0.00 0 0 100 2 793.88550 1586.76372 -1.27 26.07 1473 1473 MS2 17/26 Linfeng_20120514_rIgG_10.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 619 2.88 0.00 1 42 100 3 793.06750 2377.18796 -0.13 46.83 4461 4461 MS2 29/80 Linfeng_20120514_rIgG_8.raw High IKFEMEQNLR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 570 2.89 0.00 1 11 100 3 436.56500 1307.68045 2.11 35.96 2646 2646 MS2 19/36 Linfeng_20120514_rIgG_1.raw High SDLEmQYETLQEELMALKK Unambiguous 1 1 IPI00019359.4 M5(Oxidation) CID 1.0000 0.0000 1 1 547 2.90 0.00 1 8 7 3 772.37689 2315.11612 0.64 49.00 4926 4926 MS2 25/72 Linfeng_20120514_rIgG_1.raw High IKFEMEQNLR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 555 2.90 0.00 1 11 100 3 436.56543 1307.68174 3.09 35.78 2641 2641 MS2 21/36 Linfeng_20120514_rIgG_9.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 601 2.91 0.00 1 9 57 3 617.98120 1851.92905 1.11 48.35 4177 4177 MS2 31/56 Linfeng_20120515_BRCA1_7.raw High IKFEmEQNLR Unambiguous 1 1 IPI00019359.4 M5(Oxidation) CID 1.0000 0.0000 1 1 526 2.91 0.00 1 16 100 3 441.89551 1323.67197 -0.49 36.14 2841 2841 MS2 21/36 Linfeng_20120514_rIgG_2.raw High VQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 426 2.92 0.00 0 1 100 2 793.88568 1586.76409 -1.04 26.01 1465 1465 MS2 19/26 Linfeng_20120515_BRCA1_8.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 140 2.92 0.00 0 44 100 3 902.39166 2705.16043 -0.30 43.61 3571 3571 MS2 23/124 Linfeng_20120514_rIgG_6.raw High DIENQYETQITQIEHEVSSSGQEVQSSAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 387 2.92 0.00 0 0 3 3 1088.84082 3264.50791 -1.86 48.89 4417 4417 MS2 30/112 Linfeng_20120515_BRCA1_4.raw Medium NHKEEMSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 479 2.92 0.00 2 4 100 4 838.91791 3352.64980 1.75 38.12 2636 2636 MS2 39/180 Linfeng_20120514_rIgG_4.raw Medium VQALEEANNDLENKIQDWYDKK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 507 2.92 0.00 2 30 85 4 666.57928 2663.29531 0.17 48.31 4313 4313 MS2 32/126 Linfeng_20120514_rIgG_10.raw High DQIVDLTVGNNK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 630 2.92 0.00 0 12 100 2 658.34772 1315.68816 2.19 32.73 1957 1957 MS2 16/22 Linfeng_20120515_BRCA1_4.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 144 2.93 0.00 0 0 100 2 1255.56885 2510.13042 -0.58 41.47 3308 3308 MS2 22/44 Linfeng_20120514_rIgG_3.raw High DQIVDLTVGNNK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 596 2.94 0.00 0 32 100 2 658.34784 1315.68840 2.37 32.06 2131 2131 MS2 14/22 Linfeng_20120514_rIgG_3.raw High IKFEMEQNLR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 570 2.95 0.00 1 24 61 3 436.56503 1307.68055 2.18 37.00 2820 2820 MS2 20/36 Linfeng_20120514_rIgG_3.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 35 2.95 0.00 0 0 100 2 896.36810 1791.72893 0.63 13.66 798 798 MS2 18/44 Linfeng_20120514_rIgG_2.raw Medium VQALEEANNDLENKIQDWYDKK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 478 2.96 0.00 2 6 60 4 666.57977 2663.29726 0.90 48.41 4837 4837 MS2 32/126 Linfeng_20120515_BRCA1_10.raw High IKFEMEQNLR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 635 2.99 0.00 1 5 33 3 436.56564 1307.68238 3.58 35.99 2434 2434 MS2 20/36 Linfeng_20120515_BRCA1_7.raw High QVLDNLTMEKSDLEMQYETLQEELMALKK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 432 3.00 0.00 2 12 46 4 868.43530 3470.71938 2.56 55.53 5811 5811 MS2 26/168 Linfeng_20120514_rIgG_2.raw High VQALEEANNDLENKIQDWYDKK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 496 3.00 0.00 2 23 100 4 666.57941 2663.29580 0.35 48.37 4504 4504 MS2 33/126 Linfeng_20120514_rIgG_9.raw High IKFEMEQNLR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 552 3.01 0.00 1 5 68 3 436.56537 1307.68155 2.95 36.05 2403 2403 MS2 21/36 Linfeng_20120514_rIgG_4.raw High IKFEMEQNLR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 565 3.02 0.00 1 13 86 3 436.56451 1307.67899 0.98 36.77 2949 2949 MS2 20/36 Linfeng_20120514_rIgG_2.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 29 3.02 0.00 0 0 100 2 896.36725 1791.72722 -0.32 13.84 786 786 MS2 20/44 Linfeng_20120515_BRCA1_10.raw High DQIVDLTVGNNK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 574 3.04 0.00 0 28 100 2 658.34894 1315.69060 4.04 32.19 2163 2163 MS2 16/22 Linfeng_20120515_BRCA1_10.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 608 3.06 0.00 1 38 100 3 793.06891 2377.19217 1.65 47.02 4009 4009 MS2 25/80 Linfeng_20120514_rIgG_10.raw High VQALEEANNDLENKIQDWYDKK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 508 3.07 0.00 2 5 100 4 666.57935 2663.29555 0.26 48.38 4433 4433 MS2 31/126 Linfeng_20120514_rIgG_3.raw High NHKEEMSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 482 3.08 0.00 2 10 100 4 838.91846 3352.65200 2.41 38.07 3116 3116 MS2 41/180 Linfeng_20120514_rIgG_2.raw High VQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 439 3.08 0.00 0 3 100 2 793.88623 1586.76518 -0.34 27.26 1492 1492 MS2 17/26 Linfeng_20120515_BRCA1_2.raw High VQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 444 3.08 0.00 0 4 100 2 793.88550 1586.76372 -1.27 25.58 1443 1443 MS2 18/26 Linfeng_20120514_rIgG_1.raw High NHKEEMSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 481 3.09 0.00 2 4 100 4 838.91815 3352.65078 2.04 37.89 2603 2603 MS2 38/180 Linfeng_20120514_rIgG_4.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 205 3.10 0.00 0 9 100 3 837.38190 2510.13114 -0.29 41.27 2881 2881 MS2 28/88 Linfeng_20120515_BRCA1_7.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 621 3.11 0.00 1 12 100 3 793.06750 2377.18796 -0.13 47.96 4185 4185 MS2 27/80 Linfeng_20120515_BRCA1_9.raw High NHKEEMSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 482 3.11 0.00 2 10 100 4 838.91846 3352.65200 2.41 37.60 2886 2886 MS2 41/180 Linfeng_20120514_rIgG_3.raw High IKFEMEQNLR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 555 3.13 0.00 1 4 39 3 436.56424 1307.67817 0.35 35.75 2778 2778 MS2 20/36 Linfeng_20120514_rIgG_2.raw High VQALEEANNDLENKIQDWYDKK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 508 3.13 0.00 2 32 100 4 666.58081 2663.30141 2.46 48.36 4179 4179 MS2 32/126 Linfeng_20120515_BRCA1_7.raw High LEKEIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 410 3.15 0.00 1 10 100 4 720.84528 2880.35927 2.00 45.81 3670 3670 MS2 29/150 Linfeng_20120514_rIgG_4.raw High VQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 418 3.17 0.00 0 1 100 2 793.88599 1586.76470 -0.65 27.06 1501 1501 MS2 19/26 Linfeng_20120514_rIgG_7.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 205 3.20 0.00 0 24 100 3 837.38287 2510.13407 0.87 41.32 3663 3663 MS2 26/88 Linfeng_20120515_BRCA1_8.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 139 3.21 0.00 0 16 100 3 902.39185 2705.16098 -0.10 44.19 3189 3189 MS2 32/124 Linfeng_20120515_BRCA1_7.raw High TLNDMRQEYEQLIAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 623 3.22 0.00 1 10 73 3 617.98047 1851.92685 -0.08 48.45 4848 4848 MS2 27/56 Linfeng_20120515_BRCA1_10.raw High NHKEEMSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 471 3.22 0.00 2 6 100 4 838.91705 3352.64638 0.73 38.90 3052 3052 MS2 40/180 Linfeng_20120514_rIgG_3.raw High KDIENQYETQITQIEHEVSSSGQEVQSSAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 437 3.22 0.00 1 1 67 4 848.90759 3392.60854 -0.12 48.51 4853 4853 MS2 36/174 Linfeng_20120514_rIgG_2.raw High NHKEEMSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 481 3.23 0.00 2 2 100 4 838.91815 3352.65078 2.04 38.79 3223 3223 MS2 44/180 Linfeng_20120514_rIgG_2.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 30 3.23 0.00 0 0 100 2 896.36731 1791.72734 -0.26 13.85 776 776 MS2 20/44 Linfeng_20120515_BRCA1_7.raw High VQALEEANNDLENKIQDWYDKK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 500 3.24 0.00 2 54 100 4 666.58002 2663.29824 1.27 48.33 4823 4823 MS2 26/126 Linfeng_20120514_rIgG_8.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 113 3.24 0.00 0 0 100 2 1353.08350 2705.15972 -0.57 44.25 3299 3299 MS2 21/62 Linfeng_20120514_rIgG_4.raw High VQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 439 3.25 0.00 0 0 100 2 793.88568 1586.76409 -1.04 26.07 1428 1428 MS2 21/26 Linfeng_20120515_BRCA1_4.raw High IKFEMEQNLR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 570 3.28 0.00 1 5 26 3 436.56506 1307.68064 2.25 35.86 2678 2678 MS2 20/36 Linfeng_20120514_rIgG_3.raw High VQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 435 3.29 0.00 0 0 100 2 793.88513 1586.76299 -1.73 25.72 1441 1441 MS2 19/26 Linfeng_20120515_BRCA1_10.raw High NHKEEMSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 481 3.30 0.00 2 10 100 4 838.91821 3352.65102 2.11 38.62 3197 3197 MS2 44/180 Linfeng_20120514_rIgG_2.raw High DQIVDLTVGNNK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 601 3.35 0.00 0 15 100 2 658.34747 1315.68767 1.82 31.88 2089 2089 MS2 17/22 Linfeng_20120514_rIgG_1.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 622 3.36 0.00 1 26 100 3 793.06647 2377.18485 -1.44 47.06 4193 4193 MS2 29/80 Linfeng_20120514_rIgG_9.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 136 3.37 0.00 0 32 100 3 902.39130 2705.15934 -0.71 43.67 3343 3343 MS2 29/124 Linfeng_20120514_rIgG_10.raw High KDIENQYETQITQIEHEVSSSGQEVQSSAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 424 3.38 0.00 1 0 100 4 848.90710 3392.60659 -0.69 48.31 4724 4724 MS2 41/174 Linfeng_20120514_rIgG_1.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 114 3.38 0.00 0 0 100 2 1353.08276 2705.15825 -1.11 44.14 3275 3275 MS2 21/62 Linfeng_20120514_rIgG_4.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 203 3.39 0.00 0 2 100 3 837.38165 2510.13041 -0.58 41.73 3499 3499 MS2 28/88 Linfeng_20120515_BRCA1_10.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 132 3.40 0.00 0 30 100 3 902.39099 2705.15842 -1.05 44.45 3715 3715 MS2 27/124 Linfeng_20120514_rIgG_3.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 29 3.40 0.00 0 3 100 2 896.36707 1791.72685 -0.53 13.69 797 797 MS2 21/44 Linfeng_20120514_rIgG_3.raw High NHKEEMSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 486 3.40 0.00 2 8 100 4 838.91766 3352.64882 1.46 38.43 2685 2685 MS2 38/180 Linfeng_20120514_rIgG_4.raw High VQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 427 3.40 0.00 0 1 100 2 793.88593 1586.76457 -0.73 27.09 1489 1489 MS2 21/26 Linfeng_20120515_BRCA1_4.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 24 3.41 0.00 0 0 100 2 896.36694 1791.72661 -0.66 13.79 776 776 MS2 19/44 Linfeng_20120514_rIgG_4.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 28 3.42 0.00 0 0 100 2 896.36676 1791.72624 -0.87 13.79 794 794 MS2 18/44 Linfeng_20120514_rIgG_10.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 211 3.44 0.00 0 29 100 3 837.38300 2510.13443 1.02 41.92 3368 3368 MS2 31/88 Linfeng_20120514_rIgG_6.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 128 3.45 0.00 0 0 100 2 1353.08618 2705.16509 1.42 43.78 3462 3462 MS2 26/62 Linfeng_20120514_rIgG_5.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 140 3.45 0.00 0 41 100 3 902.39172 2705.16062 -0.23 48.62 4486 4486 MS2 30/124 Linfeng_20120514_rIgG_3.raw High VQALEEANNDLENKIQDWYDK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 443 3.45 0.00 1 7 44 3 845.73804 2535.19956 -0.13 48.63 4884 4884 MS2 32/80 Linfeng_20120514_rIgG_2.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 216 3.46 0.00 0 30 100 3 837.38324 2510.13517 1.31 41.50 3306 3306 MS2 28/88 Linfeng_20120514_rIgG_9.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 139 3.47 0.00 0 3 100 3 902.39160 2705.16025 -0.37 44.10 3919 3919 MS2 26/124 Linfeng_20120514_rIgG_2.raw High IKFEMEQNLR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 555 3.47 0.00 1 4 58 3 436.56528 1307.68128 2.74 35.87 2794 2794 MS2 21/36 Linfeng_20120515_BRCA1_10.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 618 3.49 0.00 1 15 100 3 793.06567 2377.18247 -2.44 46.99 4368 4368 MS2 30/80 Linfeng_20120514_rIgG_6.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 205 3.50 0.00 0 2 100 3 837.38196 2510.13132 -0.22 41.18 3445 3445 MS2 28/88 Linfeng_20120515_BRCA1_10.raw High KDIENQYETQITQIEHEVSSSGQEVQSSAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 439 3.50 0.00 1 1 100 4 848.90741 3392.60781 -0.33 48.41 4440 4440 MS2 37/174 Linfeng_20120514_rIgG_3.raw High NHKEEMSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 475 3.50 0.00 2 7 100 4 838.91718 3352.64687 0.88 37.82 2914 2914 MS2 39/180 Linfeng_20120514_rIgG_3.raw High NHKEEMSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 488 3.50 0.00 2 4 100 4 838.91937 3352.65566 3.50 38.64 3200 3200 MS2 36/180 Linfeng_20120514_rIgG_2.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 129 3.51 0.00 0 41 100 3 902.39044 2705.15677 -1.66 43.96 4048 4048 MS2 27/124 Linfeng_20120515_BRCA1_8.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 208 3.52 0.00 0 71 100 3 837.38220 2510.13205 0.07 42.17 3393 3393 MS2 24/88 Linfeng_20120514_rIgG_6.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 621 3.53 0.00 1 23 100 3 793.06708 2377.18668 -0.67 48.29 4051 4051 MS2 29/80 Linfeng_20120514_rIgG_7.raw High DQIVDLTVGNNK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 570 3.54 0.00 0 16 100 2 658.34705 1315.68682 1.17 32.77 2310 2310 MS2 17/22 Linfeng_20120514_rIgG_2.raw High NHKEEMSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 477 3.56 0.00 2 3 100 4 838.91809 3352.65053 1.97 37.92 2608 2608 MS2 38/180 Linfeng_20120514_rIgG_4.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 614 3.58 0.00 1 14 100 3 793.06726 2377.18723 -0.43 47.08 4923 4923 MS2 31/80 Linfeng_20120515_BRCA1_5.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 123 3.58 0.00 0 0 100 2 1353.08472 2705.16216 0.33 43.89 3628 3628 MS2 17/62 Linfeng_20120514_rIgG_6.raw High KDIENQYETQITQIEHEVSSSGQEVQSSAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 414 3.59 0.00 1 3 83 4 848.90692 3392.60586 -0.91 48.36 4324 4324 MS2 39/174 Linfeng_20120514_rIgG_10.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 207 3.59 0.00 0 7 100 3 837.38220 2510.13205 0.07 41.33 2928 2928 MS2 27/88 Linfeng_20120515_BRCA1_4.raw High VQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 454 3.61 0.00 0 1 100 2 793.88660 1586.76592 0.12 26.78 1536 1536 MS2 20/26 Linfeng_20120514_rIgG_8.raw High VQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 447 3.63 0.00 0 0 100 2 793.88544 1586.76360 -1.34 27.33 1510 1510 MS2 19/26 Linfeng_20120515_BRCA1_6.raw High GGSGGSYGGGGSGGGYGGGSGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 33 3.63 0.00 0 0 100 2 896.36841 1791.72954 0.97 13.82 792 792 MS2 24/44 Linfeng_20120514_rIgG_1.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 208 3.63 0.00 0 25 100 3 837.38281 2510.13388 0.80 41.42 3677 3677 MS2 32/88 Linfeng_20120515_BRCA1_8.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 178 3.65 0.00 0 0 100 2 1255.57275 2510.13823 2.53 41.87 3606 3606 MS2 21/44 Linfeng_20120514_rIgG_2.raw High HGVQELEIELQSQLSK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 496 3.65 0.00 0 25 72 3 613.32770 1837.96854 1.66 48.59 4875 4875 MS2 30/60 Linfeng_20120514_rIgG_2.raw High NHKEEMSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 486 3.65 0.00 2 6 100 4 838.91772 3352.64907 1.53 38.37 3162 3162 MS2 47/180 Linfeng_20120514_rIgG_2.raw High NYSPYYNTIDDLKDQIVDLTVGNNK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 524 3.65 0.00 1 24 71 3 968.14429 2902.41831 2.66 55.53 5810 5810 MS2 23/96 Linfeng_20120514_rIgG_2.raw High NHKEEMSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 477 3.65 0.00 2 3 100 4 838.91809 3352.65053 1.97 37.85 3084 3084 MS2 42/180 Linfeng_20120514_rIgG_2.raw High NHKEEMSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 475 3.66 0.00 2 4 100 4 838.91693 3352.64589 0.59 38.52 3002 3002 MS2 40/180 Linfeng_20120514_rIgG_3.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 122 3.67 0.00 0 0 100 2 1353.08423 2705.16118 -0.03 44.27 3947 3947 MS2 22/62 Linfeng_20120514_rIgG_2.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 145 3.68 0.00 0 35 100 3 902.39258 2705.16318 0.71 43.76 3581 3581 MS2 33/124 Linfeng_20120514_rIgG_9.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 212 3.69 0.00 0 28 100 3 837.38330 2510.13535 1.39 41.34 3422 3422 MS2 28/88 Linfeng_20120514_rIgG_8.raw High KDIENQYETQITQIEHEVSSSGQEVQSSAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 441 3.69 0.00 1 5 100 4 848.90771 3392.60903 0.03 48.42 4841 4841 MS2 38/174 Linfeng_20120515_BRCA1_10.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 204 3.69 0.00 0 12 100 3 837.38196 2510.13132 -0.22 42.37 2997 2997 MS2 28/88 Linfeng_20120514_rIgG_7.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 214 3.69 0.00 0 32 100 3 837.38354 2510.13608 1.68 41.39 3291 3291 MS2 28/88 Linfeng_20120514_rIgG_9.raw High VQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 433 3.70 0.00 0 0 100 2 793.88556 1586.76384 -1.19 26.02 1450 1450 MS2 20/26 Linfeng_20120514_rIgG_6.raw High KDIENQYETQITQIEHEVSSSGQEVQSSAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 416 3.70 0.00 1 3 96 4 848.90851 3392.61220 0.96 48.28 4797 4797 MS2 37/174 Linfeng_20120514_rIgG_2.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 618 3.70 0.00 1 27 100 3 793.07056 2377.19712 3.73 47.26 4021 4021 MS2 30/80 Linfeng_20120515_BRCA1_9.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 129 3.73 0.00 0 0 100 2 1353.08630 2705.16533 1.51 44.37 3968 3968 MS2 18/62 Linfeng_20120514_rIgG_2.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 157 3.74 0.00 0 20 100 3 902.39398 2705.16739 2.27 43.46 3811 3811 MS2 30/124 Linfeng_20120514_rIgG_2.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 107 3.75 0.00 0 0 100 2 1353.08203 2705.15679 -1.65 43.81 3609 3609 MS2 22/62 Linfeng_20120514_rIgG_6.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 201 3.75 0.00 0 22 100 3 837.38239 2510.13260 0.29 41.35 2905 2905 MS2 28/88 Linfeng_20120514_rIgG_7.raw High KDIENQYETQITQIEHEVSSSGQEVQSSAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 437 3.76 0.00 1 1 100 4 848.90747 3392.60805 -0.26 48.39 4280 4280 MS2 38/174 Linfeng_20120514_rIgG_4.raw High NHKEEMSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 488 3.76 0.00 2 28 100 4 838.91937 3352.65566 3.50 37.71 3061 3061 MS2 47/180 Linfeng_20120514_rIgG_2.raw High HGVQELEIELQSQLSK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 480 3.77 0.00 0 6 38 3 613.32697 1837.96634 0.46 48.66 4489 4489 MS2 29/60 Linfeng_20120514_rIgG_5.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 144 3.77 0.00 0 14 100 3 902.39221 2705.16208 0.31 43.86 3475 3475 MS2 30/124 Linfeng_20120514_rIgG_5.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 136 3.77 0.00 0 19 100 3 902.39124 2705.15915 -0.78 43.94 3770 3770 MS2 31/124 Linfeng_20120514_rIgG_8.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 150 3.78 0.00 0 24 100 3 902.39288 2705.16410 1.05 43.78 3112 3112 MS2 33/124 Linfeng_20120515_BRCA1_7.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 140 3.78 0.00 0 24 100 3 902.39191 2705.16117 -0.03 43.69 3450 3450 MS2 31/124 Linfeng_20120514_rIgG_5.raw High DQIVDLTVGNNK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 626 3.78 0.00 0 21 100 2 658.34766 1315.68804 2.09 32.20 1933 1933 MS2 19/22 Linfeng_20120514_rIgG_4.raw High VQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 459 3.80 0.00 0 6 100 2 793.88654 1586.76579 0.04 27.25 1574 1574 MS2 21/26 Linfeng_20120515_BRCA1_10.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 135 3.81 0.00 0 28 100 3 902.39142 2705.15970 -0.57 43.94 3210 3210 MS2 26/124 Linfeng_20120515_BRCA1_4.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 109 3.82 0.00 0 0 100 2 1353.08496 2705.16265 0.52 43.85 3657 3657 MS2 23/62 Linfeng_20120514_rIgG_1.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 208 3.82 0.00 0 6 100 3 837.38220 2510.13205 0.07 42.51 3415 3415 MS2 31/88 Linfeng_20120514_rIgG_3.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 108 3.82 0.00 0 0 100 2 1353.08252 2705.15776 -1.29 43.58 3547 3547 MS2 22/62 Linfeng_20120514_rIgG_3.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 624 3.83 0.00 1 29 100 3 793.06769 2377.18851 0.10 47.11 3973 3973 MS2 33/80 Linfeng_20120514_rIgG_4.raw High NHKEEMSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 477 3.83 0.00 2 7 100 4 838.91809 3352.65053 1.97 57.21 6202 6202 MS2 42/180 Linfeng_20120514_rIgG_2.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 124 3.84 0.00 0 0 100 2 1353.08459 2705.16191 0.24 43.82 3650 3650 MS2 20/62 Linfeng_20120514_rIgG_1.raw High KDIENQYETQITQIEHEVSSSGQEVQSSAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 437 3.84 0.00 1 12 88 4 848.90753 3392.60830 -0.19 48.43 4519 4519 MS2 40/174 Linfeng_20120514_rIgG_9.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 209 3.84 0.00 0 30 100 3 837.38281 2510.13388 0.80 41.66 3330 3330 MS2 26/88 Linfeng_20120514_rIgG_9.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 217 3.85 0.00 0 10 100 3 837.38458 2510.13919 2.92 40.98 3499 3499 MS2 30/88 Linfeng_20120514_rIgG_2.raw High KDIENQYETQITQIEHEVSSSGQEVQSSAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 439 3.87 0.00 1 76 100 4 848.90741 3392.60781 -0.33 48.45 4286 4286 MS2 42/174 Linfeng_20120515_BRCA1_4.raw High VQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 420 3.88 0.00 0 1 100 2 793.88568 1586.76409 -1.04 27.03 1512 1512 MS2 20/26 Linfeng_20120514_rIgG_6.raw High VQALEEANNDLENKIQDWYDKK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 507 3.89 0.00 2 9 27 4 666.58026 2663.29922 1.63 48.28 4796 4796 MS2 40/126 Linfeng_20120514_rIgG_2.raw High HGVQELEIELQSQLSK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 505 3.89 0.00 0 3 70 3 613.32611 1837.96378 -0.93 48.70 4220 4220 MS2 30/60 Linfeng_20120515_BRCA1_3.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 118 3.90 0.00 0 0 100 2 1353.08313 2705.15898 -0.84 43.82 3215 3215 MS2 24/62 Linfeng_20120514_rIgG_4.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 115 3.90 0.00 0 0 100 2 1353.08154 2705.15581 -2.01 44.31 3313 3313 MS2 23/62 Linfeng_20120514_rIgG_4.raw High HGVQELEIELQSQLSK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 500 3.90 0.00 0 11 100 3 613.32623 1837.96415 -0.73 48.64 4492 4492 MS2 29/60 Linfeng_20120514_rIgG_3.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 623 3.90 0.00 1 24 100 3 793.06775 2377.18869 0.18 47.21 3986 3986 MS2 26/80 Linfeng_20120515_BRCA1_4.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 619 3.91 0.00 1 17 100 3 793.06482 2377.17990 -3.52 47.00 4904 4904 MS2 32/80 Linfeng_20120515_BRCA1_5.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 144 3.91 0.00 0 11 100 3 902.39203 2705.16153 0.10 44.16 3520 3520 MS2 30/124 Linfeng_20120514_rIgG_5.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 621 3.92 0.00 1 17 100 3 793.06720 2377.18705 -0.51 46.97 4495 4495 MS2 34/80 Linfeng_20120514_rIgG_8.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 142 3.92 0.00 0 25 100 3 902.39203 2705.16153 0.10 43.66 3579 3579 MS2 32/124 Linfeng_20120514_rIgG_6.raw High VQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 463 3.93 0.00 0 4 100 2 793.88617 1586.76506 -0.42 26.72 1527 1527 MS2 21/26 Linfeng_20120514_rIgG_8.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 203 3.93 0.00 0 2 100 3 837.38171 2510.13059 -0.51 41.87 3514 3514 MS2 25/88 Linfeng_20120515_BRCA1_10.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 213 3.94 0.00 0 27 100 3 837.38330 2510.13535 1.39 41.90 3271 3271 MS2 27/88 Linfeng_20120514_rIgG_5.raw High KDIENQYETQITQIEHEVSSSGQEVQSSAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 441 3.94 0.00 1 14 81 4 848.90771 3392.60903 0.03 48.48 4108 4108 MS2 42/174 Linfeng_20120515_BRCA1_6.raw High KDIENQYETQITQIEHEVSSSGQEVQSSAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 414 3.96 0.00 1 13 96 4 848.90686 3392.60561 -0.98 48.41 4497 4497 MS2 35/174 Linfeng_20120515_BRCA1_1.raw High VQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 432 3.96 0.00 0 8 100 2 793.88635 1586.76543 -0.19 25.48 1457 1457 MS2 22/26 Linfeng_20120514_rIgG_3.raw High VQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 455 3.97 0.00 0 2 100 2 793.88550 1586.76372 -1.27 26.73 1509 1509 MS2 22/26 Linfeng_20120515_BRCA1_10.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 618 4.01 0.00 1 12 100 3 793.06787 2377.18906 0.34 47.00 4789 4789 MS2 33/80 Linfeng_20120515_BRCA1_8.raw High VQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 452 4.03 0.00 0 0 100 2 793.88544 1586.76360 -1.34 27.01 1495 1495 MS2 22/26 Linfeng_20120515_BRCA1_7.raw High HGVQELEIELQSQLSK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 507 4.03 0.00 0 9 27 3 613.32611 1837.96378 -0.93 48.69 5328 5328 MS2 29/60 Linfeng_20120515_BRCA1_5.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 621 4.03 0.00 1 11 100 3 793.06671 2377.18558 -1.13 48.12 4011 4011 MS2 31/80 Linfeng_20120514_rIgG_7.raw High NHKEEMSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 484 4.04 0.00 2 6 100 4 838.91754 3352.64834 1.31 38.17 3130 3130 MS2 42/180 Linfeng_20120514_rIgG_2.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 136 4.05 0.00 0 3 100 3 902.39130 2705.15934 -0.71 44.05 3160 3160 MS2 29/124 Linfeng_20120515_BRCA1_7.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 202 4.05 0.00 0 5 100 3 837.38184 2510.13095 -0.37 41.56 3484 3484 MS2 31/88 Linfeng_20120515_BRCA1_10.raw High DQIVDLTVGNNK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 581 4.06 0.00 0 31 100 2 658.34644 1315.68559 0.24 31.77 2162 2162 MS2 19/22 Linfeng_20120514_rIgG_2.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 624 4.07 0.00 1 15 100 3 793.06848 2377.19089 1.11 46.93 4390 4390 MS2 33/80 Linfeng_20120514_rIgG_1.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 617 4.08 0.00 1 17 100 3 793.06799 2377.18943 0.49 47.19 3993 3993 MS2 30/80 Linfeng_20120514_rIgG_4.raw High HGVQELEIELQSQLSK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 488 4.10 0.00 0 2 15 3 613.32648 1837.96488 -0.33 48.67 4908 4908 MS2 27/60 Linfeng_20120514_rIgG_8.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 152 4.10 0.00 0 35 100 3 902.39319 2705.16501 1.39 43.49 3575 3575 MS2 33/124 Linfeng_20120514_rIgG_1.raw High VQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 428 4.12 0.00 0 2 100 2 793.88599 1586.76470 -0.65 27.05 1504 1504 MS2 21/26 Linfeng_20120515_BRCA1_1.raw High VQALEEANNDLENKIQDWYDKK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 504 4.12 0.00 2 8 100 3 888.43658 2663.29520 0.13 48.40 4437 4437 MS2 29/84 Linfeng_20120514_rIgG_3.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 149 4.12 0.00 0 22 100 3 902.39294 2705.16428 1.12 44.35 3963 3963 MS2 31/124 Linfeng_20120514_rIgG_2.raw High VQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 438 4.13 0.00 0 5 100 2 793.88580 1586.76433 -0.88 25.20 1443 1443 MS2 21/26 Linfeng_20120514_rIgG_2.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 200 4.13 0.00 0 25 100 3 837.38141 2510.12967 -0.88 41.44 3137 3137 MS2 26/88 Linfeng_20120515_BRCA1_1.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 119 4.13 0.00 0 24 100 3 902.38898 2705.15238 -3.28 44.18 3829 3829 MS2 32/124 Linfeng_20120514_rIgG_8.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 618 4.14 0.00 1 26 100 3 793.06799 2377.18943 0.49 46.91 4474 4474 MS2 32/80 Linfeng_20120515_BRCA1_10.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 621 4.17 0.00 1 9 100 3 793.06732 2377.18741 -0.36 47.11 3773 3773 MS2 29/80 Linfeng_20120514_rIgG_7.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 116 4.17 0.00 0 0 100 2 1353.08582 2705.16435 1.15 43.56 3590 3590 MS2 22/62 Linfeng_20120514_rIgG_1.raw High VQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 458 4.17 0.00 0 1 100 2 793.88660 1586.76592 0.12 27.23 1619 1619 MS2 20/26 Linfeng_20120514_rIgG_2.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 617 4.18 0.00 1 16 100 3 793.06805 2377.18961 0.57 47.03 4140 4140 MS2 34/80 Linfeng_20120514_rIgG_3.raw High VQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 457 4.18 0.00 0 13 100 2 793.88617 1586.76506 -0.42 26.82 1539 1539 MS2 20/26 Linfeng_20120514_rIgG_8.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 139 4.19 0.00 0 9 100 3 902.39160 2705.16025 -0.37 44.06 3504 3504 MS2 37/124 Linfeng_20120514_rIgG_5.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 130 4.19 0.00 0 24 100 3 902.39093 2705.15824 -1.11 43.99 3782 3782 MS2 32/124 Linfeng_20120514_rIgG_8.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 134 4.19 0.00 0 21 100 3 902.39069 2705.15750 -1.38 43.79 3153 3153 MS2 38/124 Linfeng_20120514_rIgG_7.raw High HGVQELEIELQSQLSKK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 415 4.19 0.00 1 27 100 3 656.02545 1966.06180 0.68 48.23 4383 4383 MS2 25/64 Linfeng_20120514_rIgG_5.raw High KDIENQYETQITQIEHEVSSSGQEVQSSAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 414 4.22 0.00 1 7 44 4 848.90698 3392.60610 -0.84 48.44 4345 4345 MS2 39/174 Linfeng_20120514_rIgG_10.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 558 4.23 0.00 1 0 100 2 1189.09851 2377.18974 0.62 47.30 4199 4199 MS2 21/40 Linfeng_20120514_rIgG_3.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 203 4.23 0.00 0 3 100 3 837.38159 2510.13022 -0.66 41.51 2663 2663 MS2 25/88 Linfeng_20120515_BRCA1_2.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 205 4.23 0.00 0 24 100 3 837.38214 2510.13187 0.00 41.45 3434 3434 MS2 32/88 Linfeng_20120514_rIgG_8.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 129 4.24 0.00 0 0 100 2 1353.08655 2705.16582 1.69 43.90 3669 3669 MS2 23/62 Linfeng_20120514_rIgG_1.raw High HGVQELEIELQSQLSK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 531 4.24 0.00 0 3 8 3 613.32678 1837.96579 0.16 48.68 5205 5205 MS2 31/60 Linfeng_20120515_BRCA1_8.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 526 4.24 0.00 1 0 100 2 1189.09924 2377.19121 1.24 47.24 4547 4547 MS2 21/40 Linfeng_20120514_rIgG_2.raw High HGVQELEIELQSQLSKK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 415 4.25 0.00 1 28 100 3 656.02551 1966.06198 0.77 48.38 4184 4184 MS2 28/64 Linfeng_20120515_BRCA1_7.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 214 4.25 0.00 0 24 100 3 837.38336 2510.13553 1.46 41.52 3334 3334 MS2 29/88 Linfeng_20120514_rIgG_6.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 613 4.26 0.00 1 11 89 3 793.06738 2377.18760 -0.28 48.20 4233 4233 MS2 33/80 Linfeng_20120514_rIgG_4.raw High VQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 450 4.27 0.00 0 1 100 2 793.88757 1586.76787 1.35 27.51 1632 1632 MS2 22/26 Linfeng_20120514_rIgG_3.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 131 4.28 0.00 0 15 100 3 902.39075 2705.15769 -1.32 44.45 3346 3346 MS2 27/124 Linfeng_20120514_rIgG_4.raw High HGVQELEIELQSQLSK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 532 4.28 0.00 0 3 11 3 613.32678 1837.96579 0.16 48.71 4266 4266 MS2 31/60 Linfeng_20120515_BRCA1_7.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 137 4.28 0.00 0 9 100 3 902.39172 2705.16062 -0.23 44.26 3944 3944 MS2 37/124 Linfeng_20120514_rIgG_2.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 209 4.28 0.00 0 31 100 3 837.38293 2510.13425 0.95 41.57 3341 3341 MS2 33/88 Linfeng_20120514_rIgG_6.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 200 4.30 0.00 0 6 100 3 837.38239 2510.13260 0.29 42.23 2959 2959 MS2 32/88 Linfeng_20120515_BRCA1_7.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 212 4.30 0.00 0 28 100 3 837.38293 2510.13425 0.95 41.73 3354 3354 MS2 30/88 Linfeng_20120514_rIgG_6.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 139 4.30 0.00 0 38 100 3 902.39154 2705.16007 -0.44 43.65 3187 3187 MS2 36/124 Linfeng_20120514_rIgG_4.raw High VQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 451 4.32 0.00 0 1 100 2 793.88629 1586.76531 -0.27 27.09 1558 1558 MS2 19/26 Linfeng_20120514_rIgG_10.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 206 4.33 0.00 0 18 100 3 837.38196 2510.13132 -0.22 41.47 2813 2813 MS2 28/88 Linfeng_20120515_BRCA1_6.raw High HGVQELEIELQSQLSK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 528 4.33 0.00 0 5 12 3 613.32678 1837.96579 0.16 48.69 4348 4348 MS2 30/60 Linfeng_20120515_BRCA1_4.raw High HGVQELEIELQSQLSK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 493 4.33 0.00 0 22 100 3 613.32654 1837.96506 -0.23 48.64 4396 4396 MS2 31/60 Linfeng_20120514_rIgG_10.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 111 4.34 0.00 0 0 100 2 1353.08179 2705.15630 -1.83 44.29 3682 3682 MS2 23/62 Linfeng_20120514_rIgG_3.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 616 4.35 0.00 1 13 100 3 793.06671 2377.18558 -1.13 46.61 4692 4692 MS2 31/80 Linfeng_20120515_BRCA1_8.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 215 4.36 0.00 0 25 100 3 837.38434 2510.13846 2.63 41.99 3360 3360 MS2 31/88 Linfeng_20120514_rIgG_1.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 209 4.36 0.00 0 10 100 3 837.38220 2510.13205 0.07 42.32 3009 3009 MS2 31/88 Linfeng_20120515_BRCA1_4.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 123 4.38 0.00 0 0 100 2 1353.08618 2705.16509 1.42 43.56 3821 3821 MS2 26/62 Linfeng_20120514_rIgG_2.raw High VQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 448 4.39 0.00 0 0 100 2 793.88538 1586.76348 -1.42 26.59 1505 1505 MS2 23/26 Linfeng_20120514_rIgG_1.raw High VQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 444 4.41 0.00 0 3 100 2 793.88629 1586.76531 -0.27 26.93 1497 1497 MS2 22/26 Linfeng_20120514_rIgG_4.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 136 4.42 0.00 0 34 100 3 902.39117 2705.15897 -0.84 43.88 3750 3750 MS2 28/124 Linfeng_20120515_BRCA1_10.raw High HGVQELEIELQSQLSK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 496 4.42 0.00 0 24 100 3 613.32629 1837.96433 -0.63 48.66 4139 4139 MS2 30/60 Linfeng_20120514_rIgG_7.raw High SDLEmQYETLQEELmALK Unambiguous 1 1 IPI00019359.4 M5(Oxidation); M15(Oxidation) CID 1.0000 0.0000 1 1 324 4.43 0.00 0 4 3 2 1102.01990 2203.03252 8.14 49.01 4680 4680 MS2 19/34 Linfeng_20120515_BRCA1_1.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 134 4.43 0.00 0 19 100 3 902.39075 2705.15769 -1.32 44.22 3292 3292 MS2 32/124 Linfeng_20120514_rIgG_4.raw High GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 19 4.43 0.00 0 0 100 3 1075.09717 3223.27695 -1.49 19.11 1098 1098 MS2 36/156 Linfeng_20120514_rIgG_3.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 206 4.43 0.00 0 37 100 3 837.38470 2510.13956 3.06 41.06 3260 3260 MS2 33/88 Linfeng_20120514_rIgG_1.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 201 4.44 0.00 0 8 100 3 837.38171 2510.13059 -0.51 41.30 3111 3111 MS2 33/88 Linfeng_20120514_rIgG_10.raw High NHKEEMSQLTGQNSGDVNVEINVAPGKDLTK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 477 4.44 0.00 2 6 100 4 838.91876 3352.65322 2.77 37.92 3093 3093 MS2 41/180 Linfeng_20120514_rIgG_2.raw High KDIENQYETQITQIEHEVSSSGQEVQSSAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 437 4.48 0.00 1 7 62 4 848.90747 3392.60805 -0.26 48.45 4200 4200 MS2 35/174 Linfeng_20120515_BRCA1_7.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 115 4.49 0.00 0 0 100 2 1353.08459 2705.16191 0.24 43.98 3243 3243 MS2 21/62 Linfeng_20120514_rIgG_4.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 622 4.52 0.00 1 14 100 3 793.06671 2377.18558 -1.13 47.14 4404 4404 MS2 33/80 Linfeng_20120514_rIgG_6.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 620 4.53 0.00 1 0 100 3 793.06567 2377.18247 -2.44 46.24 4714 4714 MS2 32/80 Linfeng_20120515_BRCA1_5.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 205 4.54 0.00 0 5 100 3 837.38245 2510.13279 0.36 42.59 3057 3057 MS2 31/88 Linfeng_20120514_rIgG_4.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 206 4.54 0.00 0 8 100 3 837.38196 2510.13132 -0.22 41.03 3270 3270 MS2 32/88 Linfeng_20120514_rIgG_3.raw High HGVQELEIELQSQLSK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 500 4.54 0.00 0 13 50 3 613.32617 1837.96396 -0.83 48.65 4777 4777 MS2 32/60 Linfeng_20120514_rIgG_6.raw High HGVQELEIELQSQLSK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 506 4.55 0.00 0 4 35 3 613.32611 1837.96378 -0.93 48.70 4369 4369 MS2 32/60 Linfeng_20120515_BRCA1_9.raw High KDIENQYETQITQIEHEVSSSGQEVQSSAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 415 4.55 0.00 1 17 100 4 848.90680 3392.60537 -1.05 48.46 4092 4092 MS2 35/174 Linfeng_20120514_rIgG_7.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 527 4.55 0.00 1 0 100 2 1189.09741 2377.18755 -0.30 48.31 4420 4420 MS2 23/40 Linfeng_20120514_rIgG_3.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 154 4.56 0.00 0 12 100 3 902.39349 2705.16593 1.73 43.91 3485 3485 MS2 34/124 Linfeng_20120514_rIgG_5.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 180 4.56 0.00 0 0 100 2 1255.57178 2510.13628 1.76 41.39 3555 3555 MS2 22/44 Linfeng_20120514_rIgG_2.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 121 4.57 0.00 0 0 100 2 1353.08398 2705.16069 -0.21 44.06 3162 3162 MS2 22/62 Linfeng_20120515_BRCA1_7.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 596 4.58 0.00 1 0 37 3 793.06824 2377.19016 0.80 47.80 4044 4044 MS2 31/80 Linfeng_20120515_BRCA1_7.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 132 4.59 0.00 0 33 100 3 902.39063 2705.15732 -1.45 43.55 3541 3541 MS2 38/124 Linfeng_20120514_rIgG_3.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 620 4.59 0.00 1 13 100 3 793.06732 2377.18741 -0.36 48.06 4428 4428 MS2 31/80 Linfeng_20120514_rIgG_9.raw High HGVQELEIELQSQLSK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 484 4.60 0.00 0 6 34 3 613.32690 1837.96616 0.36 48.68 4581 4581 MS2 31/60 Linfeng_20120514_rIgG_9.raw High HGVQELEIELQSQLSK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 493 4.61 0.00 0 12 65 3 613.32660 1837.96524 -0.13 48.60 4799 4799 MS2 33/60 Linfeng_20120514_rIgG_1.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 145 4.64 0.00 0 29 100 3 902.39264 2705.16336 0.78 43.73 3198 3198 MS2 38/124 Linfeng_20120514_rIgG_4.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 616 4.64 0.00 1 10 100 3 793.06628 2377.18430 -1.67 47.05 4506 4506 MS2 30/80 Linfeng_20120515_BRCA1_10.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 113 4.65 0.00 0 19 100 2 1353.08215 2705.15703 -1.56 43.91 3757 3757 MS2 21/62 Linfeng_20120515_BRCA1_10.raw High HGVQELEIELQSQLSK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 505 4.65 0.00 0 7 20 3 613.32617 1837.96396 -0.83 48.67 4562 4562 MS2 32/60 Linfeng_20120515_BRCA1_1.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 547 4.67 0.00 1 0 100 2 1189.09729 2377.18730 -0.40 47.49 3971 3971 MS2 22/40 Linfeng_20120515_BRCA1_7.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 97 4.67 0.00 0 0 100 2 1353.08008 2705.15288 -3.09 44.00 3619 3619 MS2 24/62 Linfeng_20120514_rIgG_3.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 203 4.67 0.00 0 27 100 3 837.38184 2510.13095 -0.37 41.36 3132 3132 MS2 33/88 Linfeng_20120515_BRCA1_1.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 144 4.68 0.00 0 18 100 3 902.39197 2705.16135 0.04 43.79 3464 3464 MS2 34/124 Linfeng_20120514_rIgG_5.raw High HGVQELEIELQSQLSK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 507 4.72 0.00 0 4 39 3 613.32611 1837.96378 -0.93 48.71 4164 4164 MS2 31/60 Linfeng_20120515_BRCA1_6.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 136 4.74 0.00 0 15 100 3 902.39124 2705.15915 -0.78 43.88 3665 3665 MS2 37/124 Linfeng_20120514_rIgG_1.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 144 4.76 0.00 0 11 100 3 902.39197 2705.16135 0.04 43.99 3495 3495 MS2 32/124 Linfeng_20120514_rIgG_5.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 108 4.78 0.00 0 0 100 2 1353.08374 2705.16020 -0.39 43.76 3635 3635 MS2 25/62 Linfeng_20120514_rIgG_1.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 200 4.78 0.00 0 14 100 3 837.38123 2510.12912 -1.09 41.74 3166 3166 MS2 32/88 Linfeng_20120515_BRCA1_1.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 215 4.78 0.00 0 25 100 3 837.38458 2510.13919 2.92 41.12 3265 3265 MS2 35/88 Linfeng_20120514_rIgG_1.raw High VQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 455 4.79 0.00 0 3 73 2 793.88666 1586.76604 0.19 26.22 1517 1517 MS2 23/26 Linfeng_20120514_rIgG_2.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 132 4.80 0.00 0 16 100 3 902.39105 2705.15860 -0.98 43.88 3228 3228 MS2 30/124 Linfeng_20120514_rIgG_4.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 129 4.82 0.00 0 10 100 3 902.39056 2705.15714 -1.52 44.14 3274 3274 MS2 36/124 Linfeng_20120514_rIgG_4.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 136 4.83 0.00 0 40 100 3 902.39111 2705.15879 -0.91 44.09 3798 3798 MS2 29/124 Linfeng_20120515_BRCA1_10.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 614 4.85 0.00 1 72 100 3 793.06738 2377.18760 -0.28 47.10 4181 4181 MS2 31/80 Linfeng_20120515_BRCA1_1.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 144 4.86 0.00 0 14 100 3 902.39209 2705.16172 0.17 43.71 3624 3624 MS2 36/124 Linfeng_20120514_rIgG_1.raw High HGVQELEIELQSQLSK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 494 4.88 0.00 0 12 48 3 613.32642 1837.96469 -0.43 48.64 4345 4345 MS2 31/60 Linfeng_20120514_rIgG_4.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 205 4.88 0.00 0 23 100 3 837.38196 2510.13132 -0.22 41.04 3676 3676 MS2 32/88 Linfeng_20120515_BRCA1_5.raw High HGVQELEIELQSQLSKK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 414 4.89 0.00 1 5 100 3 656.02521 1966.06107 0.31 48.22 4702 4702 MS2 34/64 Linfeng_20120514_rIgG_1.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 205 4.89 0.00 0 4 100 3 837.38196 2510.13132 -0.22 41.35 3461 3461 MS2 33/88 Linfeng_20120515_BRCA1_10.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 623 4.93 0.00 1 14 100 3 793.06866 2377.19144 1.34 46.99 4488 4488 MS2 32/80 Linfeng_20120514_rIgG_2.raw High HGVQELEIELQSQLSK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 501 4.94 0.00 0 3 6 3 613.32623 1837.96415 -0.73 48.70 4912 4912 MS2 30/60 Linfeng_20120515_BRCA1_10.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 205 4.96 0.00 0 2 100 3 837.38196 2510.13132 -0.22 41.41 3469 3469 MS2 33/88 Linfeng_20120515_BRCA1_10.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 202 5.00 0.00 0 28 100 3 837.38184 2510.13095 -0.37 41.23 3700 3700 MS2 32/88 Linfeng_20120515_BRCA1_5.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 129 5.02 0.00 0 15 100 3 902.39032 2705.15641 -1.79 43.90 3172 3172 MS2 34/124 Linfeng_20120514_rIgG_7.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 623 5.02 0.00 1 1 100 3 793.06775 2377.18869 0.18 47.92 3975 3975 MS2 35/80 Linfeng_20120515_BRCA1_6.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 618 5.03 0.00 1 2 86 3 793.06799 2377.18943 0.49 48.06 4369 4369 MS2 34/80 Linfeng_20120514_rIgG_3.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 620 5.04 0.00 1 0 100 3 793.06537 2377.18155 -2.82 46.45 4766 4766 MS2 31/80 Linfeng_20120515_BRCA1_5.raw High HGVQELEIELQSQLSK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 529 5.04 0.00 0 4 100 3 613.32684 1837.96598 0.26 48.68 3675 3675 MS2 31/60 Linfeng_20120515_BRCA1_2.raw High DIENQYETQITQIEHEVSSSGQEVQSSAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 391 5.04 0.00 0 0 4 3 1088.84033 3264.50644 -2.31 48.88 4629 4629 MS2 34/112 Linfeng_20120515_BRCA1_1.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 603 5.05 0.00 1 15 100 3 793.06824 2377.19016 0.80 46.79 3803 3803 MS2 34/80 Linfeng_20120515_BRCA1_7.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 620 5.07 0.00 1 13 100 3 793.06744 2377.18778 -0.20 47.94 4634 4634 MS2 33/80 Linfeng_20120514_rIgG_1.raw High HGVQELEIELQSQLSKK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 407 5.09 0.00 1 14 100 3 656.02466 1966.05942 -0.53 48.29 4485 4485 MS2 30/64 Linfeng_20120514_rIgG_9.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 204 5.10 0.00 0 3 100 3 837.38214 2510.13187 0.00 42.05 3367 3367 MS2 35/88 Linfeng_20120514_rIgG_3.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 623 5.10 0.00 1 14 100 3 793.06665 2377.18540 -1.20 46.90 3731 3731 MS2 28/80 Linfeng_20120515_BRCA1_6.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 619 5.10 0.00 1 5 94 3 793.06793 2377.18924 0.41 48.04 4247 4247 MS2 36/80 Linfeng_20120514_rIgG_10.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 607 5.15 0.00 1 16 100 3 793.06842 2377.19071 1.03 48.05 4748 4748 MS2 31/80 Linfeng_20120515_BRCA1_10.raw High KDIENQYETQITQIEHEVSSSGQEVQSSAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 380 5.15 0.00 1 23 100 3 1131.54419 3392.61802 2.67 48.44 4837 4837 MS2 29/116 Linfeng_20120514_rIgG_2.raw High DIENQYETQITQIEHEVSSSGQEVQSSAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 402 5.18 0.00 0 1 3 3 1088.84265 3264.51340 -0.17 48.89 4646 4646 MS2 35/112 Linfeng_20120514_rIgG_9.raw High HGVQELEIELQSQLSKK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 401 5.20 0.00 1 9 100 3 656.02472 1966.05960 -0.44 48.38 4829 4829 MS2 35/64 Linfeng_20120515_BRCA1_10.raw High HGVQELEIELQSQLSKK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 417 5.24 0.00 1 4 100 3 656.02521 1966.06107 0.31 48.23 4405 4405 MS2 30/64 Linfeng_20120514_rIgG_3.raw High HGVQELEIELQSQLSK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 451 5.27 0.00 0 42 100 2 919.48651 1837.96575 0.14 48.73 4597 4597 MS2 23/30 Linfeng_20120514_rIgG_9.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 208 5.33 0.00 0 32 100 3 837.38220 2510.13205 0.07 40.98 3668 3668 MS2 29/88 Linfeng_20120515_BRCA1_5.raw High HGVQELEIELQSQLSKK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 406 5.33 0.00 1 14 100 3 656.02502 1966.06052 0.03 48.26 4390 4390 MS2 32/64 Linfeng_20120514_rIgG_5.raw High VQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 475 5.39 0.00 0 2 80 2 793.88702 1586.76677 0.66 26.49 1523 1523 MS2 23/26 Linfeng_20120514_rIgG_3.raw High HGVQELEIELQSQLSKK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 407 5.40 0.00 1 3 100 3 656.02441 1966.05869 -0.90 48.40 4748 4748 MS2 30/64 Linfeng_20120514_rIgG_1.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 213 5.51 0.00 0 10 100 3 837.38348 2510.13590 1.60 41.35 2960 2960 MS2 32/88 Linfeng_20120514_rIgG_4.raw High HGVQELEIELQSQLSK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 431 5.60 0.00 0 18 100 2 919.48505 1837.96282 -1.46 48.73 4156 4156 MS2 25/30 Linfeng_20120514_rIgG_7.raw High DIENQYETQITQIEHEVSSSGQEVQSSAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 383 5.61 0.00 0 0 100 3 1088.84949 3264.53391 6.11 49.61 5172 5172 MS2 33/112 Linfeng_20120514_rIgG_2.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 120 5.63 0.00 0 11 100 3 902.38983 2705.15494 -2.33 44.28 3681 3681 MS2 36/124 Linfeng_20120514_rIgG_3.raw High HGVQELEIELQSQLSK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 442 5.64 0.00 0 38 100 2 919.48523 1837.96318 -1.26 48.69 4409 4409 MS2 24/30 Linfeng_20120514_rIgG_10.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 216 5.71 0.00 0 21 100 3 837.38324 2510.13517 1.31 41.33 3312 3312 MS2 34/88 Linfeng_20120514_rIgG_6.raw High DIENQYETQITQIEHEVSSSGQEVQSSAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 392 5.71 0.00 0 1 14 3 1088.84216 3264.51194 -0.62 48.89 4964 4964 MS2 36/112 Linfeng_20120514_rIgG_2.raw High HGVQELEIELQSQLSK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 461 5.73 0.00 0 20 100 2 919.48560 1837.96391 -0.86 48.65 4811 4811 MS2 24/30 Linfeng_20120514_rIgG_1.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 145 5.77 0.00 0 2 100 3 902.39252 2705.16300 0.65 44.00 3896 3896 MS2 40/124 Linfeng_20120514_rIgG_2.raw High HGVQELEIELQSQLSK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 445 5.80 0.00 0 26 100 2 919.48627 1837.96526 -0.13 48.63 4885 4885 MS2 25/30 Linfeng_20120514_rIgG_2.raw High HGVQELEIELQSQLSKK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 416 5.82 0.00 1 8 100 3 656.02521 1966.06107 0.31 48.24 4243 4243 MS2 35/64 Linfeng_20120514_rIgG_4.raw High EIETYHNLLEGGQEDFESSGAGK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 213 5.91 0.00 0 2 100 3 837.38403 2510.13755 2.26 42.00 3620 3620 MS2 37/88 Linfeng_20120514_rIgG_2.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 137 5.98 0.00 0 2 100 3 902.39154 2705.16007 -0.44 44.06 3909 3909 MS2 37/124 Linfeng_20120514_rIgG_2.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 109 6.00 0.00 0 6 100 3 902.38867 2705.15146 -3.62 44.13 3649 3649 MS2 37/124 Linfeng_20120514_rIgG_3.raw High DIENQYETQITQIEHEVSSSGQEVQSSAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 385 6.00 0.00 0 0 4 3 1088.84009 3264.50571 -2.53 48.89 4975 4975 MS2 41/112 Linfeng_20120514_rIgG_8.raw High GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 117 6.02 0.00 0 6 100 3 902.38885 2705.15201 -3.42 44.06 3632 3632 MS2 36/124 Linfeng_20120514_rIgG_3.raw High LASYLDKVQALEEANNDLENK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 622 6.04 0.00 1 3 22 3 793.06860 2377.19126 1.26 48.01 4729 4729 MS2 33/80 Linfeng_20120514_rIgG_2.raw High KDIENQYETQITQIEHEVSSSGQEVQSSAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 424 6.08 0.00 1 11 100 3 1131.54028 3392.60630 -0.78 48.51 4461 4461 MS2 40/116 Linfeng_20120514_rIgG_3.raw High HGVQELEIELQSQLSK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 458 6.11 0.00 0 5 42 2 919.48505 1837.96282 -1.46 48.68 4500 4500 MS2 26/30 Linfeng_20120514_rIgG_3.raw High HGVQELEIELQSQLSKK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 412 6.11 0.00 1 8 100 3 656.02545 1966.06180 0.68 48.15 4765 4765 MS2 32/64 Linfeng_20120514_rIgG_2.raw High DIENQYETQITQIEHEVSSSGQEVQSSAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 386 6.14 0.00 0 0 4 3 1088.84082 3264.50791 -1.86 48.88 4466 4466 MS2 42/112 Linfeng_20120514_rIgG_10.raw High HGVQELEIELQSQLSKK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 406 6.25 0.00 1 15 100 3 656.02441 1966.05869 -0.90 48.21 4288 4288 MS2 32/64 Linfeng_20120514_rIgG_10.raw High DIENQYETQITQIEHEVSSSGQEVQSSAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 397 6.25 0.00 0 0 7 3 1088.84119 3264.50901 -1.52 48.89 4555 4555 MS2 38/112 Linfeng_20120514_rIgG_3.raw High HGVQELEIELQSQLSK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 446 6.46 0.00 0 11 100 2 919.48627 1837.96526 -0.13 48.68 3676 3676 MS2 23/30 Linfeng_20120515_BRCA1_2.raw High DIENQYETQITQIEHEVSSSGQEVQSSAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 391 6.48 0.00 0 0 2 3 1088.84094 3264.50827 -1.75 48.87 4320 4320 MS2 36/112 Linfeng_20120515_BRCA1_7.raw High HGVQELEIELQSQLSK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 450 6.49 0.00 0 26 79 2 919.48578 1837.96428 -0.66 48.68 4355 4355 MS2 26/30 Linfeng_20120514_rIgG_4.raw High HGVQELEIELQSQLSK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 466 6.66 0.00 0 12 83 2 919.48517 1837.96306 -1.32 48.71 4917 4917 MS2 26/30 Linfeng_20120515_BRCA1_10.raw High KDIENQYETQITQIEHEVSSSGQEVQSSAK Unambiguous 1 1 IPI00019359.4 CID 1.0000 0.0000 1 1 441 6.90 0.00 1 7 100 3 1131.54187 3392.61106 0.62 48.44 4446 4446 MS2 38/116 Linfeng_20120514_rIgG_3.raw IPI00220327.4 "Keratin, type II cytoskeletal 1" 50.00 1 26 28 868 1725.91 50.00 28 541 1012.02 21.74 12 327 644 66.0 8.12 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 450 2.00 0.00 0 60 100 2 651.86194 1302.71660 1.08 49.44 3841 3841 MS2 11/22 Linfeng_20120515_BRCA1_2.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 543 2.01 0.00 0 29 100 2 633.32410 1265.64092 2.89 32.65 1980 1980 MS2 9/20 Linfeng_20120514_rIgG_4.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 540 2.01 0.00 0 44 100 2 633.32397 1265.64067 2.70 32.05 2217 2217 MS2 12/20 Linfeng_20120515_BRCA1_8.raw High SKAEAESLYQSK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 424 2.01 0.00 1 0 100 2 670.83832 1340.66936 0.06 15.20 888 888 MS2 14/22 Linfeng_20120514_rIgG_2.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 519 2.02 0.00 0 35 100 2 633.32404 1265.64079 2.79 32.16 1878 1878 MS2 13/20 Linfeng_20120515_BRCA1_3.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 415 2.02 0.00 0 100 100 2 692.34906 1383.69084 0.35 45.64 3533 3533 MS2 11/22 Linfeng_20120515_BRCA1_7.raw High NKLNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 526 2.03 0.00 1 15 100 2 800.41998 1599.83269 -0.66 43.81 3610 3610 MS2 13/26 Linfeng_20120514_rIgG_6.raw High LNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 544 2.03 0.00 0 8 100 2 679.35199 1357.69670 0.63 38.16 2704 2704 MS2 13/22 Linfeng_20120515_BRCA1_4.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 513 2.04 0.00 0 15 100 2 633.32269 1265.63811 0.67 29.76 1737 1737 MS2 11/20 Linfeng_20120515_BRCA1_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 587 2.05 0.00 0 16 100 2 590.30475 1179.60222 1.48 31.10 1842 1842 MS2 11/18 Linfeng_20120515_BRCA1_9.raw High NmQDmVEDYR Unambiguous 1 1 IPI00220327.4 M2(Oxidation); M5(Oxidation) CID 1.0000 0.0000 1 1 26 2.05 0.00 0 31 100 2 666.76373 1332.52019 0.49 33.92 2112 2112 MS2 12/18 Linfeng_20120514_rIgG_7.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 535 2.05 0.00 0 4 100 2 590.30383 1179.60039 -0.07 27.69 1539 1539 MS2 11/18 Linfeng_20120514_rIgG_5.raw High TNAENEFVTIKK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 487 2.06 0.00 1 0 100 2 697.36810 1393.72893 -2.37 22.62 1274 1274 MS2 15/22 Linfeng_20120514_rIgG_1.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 475 2.06 0.00 0 31 100 2 692.34943 1383.69158 0.88 45.70 3482 3482 MS2 15/22 Linfeng_20120514_rIgG_7.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 527 2.06 0.00 0 56 100 2 651.86121 1302.71514 -0.04 50.25 5197 5197 MS2 13/22 Linfeng_20120514_rIgG_1.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 516 2.08 0.00 0 6 100 2 633.32336 1265.63945 1.73 31.71 1898 1898 MS2 13/20 Linfeng_20120514_rIgG_5.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 493 2.09 0.00 0 42 100 2 633.32373 1265.64018 2.31 33.03 2268 2268 MS2 12/20 Linfeng_20120514_rIgG_3.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 496 2.09 0.00 0 28 100 2 651.86206 1302.71684 1.27 49.53 4617 4617 MS2 13/22 Linfeng_20120515_BRCA1_9.raw High NmQDmVEDYR Unambiguous 1 1 IPI00220327.4 M2(Oxidation); M5(Oxidation) CID 1.0000 0.0000 1 1 26 2.09 0.00 0 45 100 2 666.76489 1332.52251 2.23 34.49 2566 2566 MS2 12/18 Linfeng_20120515_BRCA1_10.raw High NMQDmVEDYR Unambiguous 1 1 IPI00220327.4 M5(Oxidation) CID 1.0000 0.0000 1 1 53 2.10 0.00 0 30 100 2 658.76782 1316.52837 2.84 33.70 2115 2115 MS2 11/18 Linfeng_20120514_rIgG_4.raw High TNAENEFVTIKK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 517 2.10 0.00 1 0 100 2 697.36835 1393.72942 -2.02 24.14 1359 1359 MS2 12/22 Linfeng_20120514_rIgG_10.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 492 2.11 0.00 0 37 100 2 633.32318 1265.63909 1.44 29.99 1935 1935 MS2 13/20 Linfeng_20120515_BRCA1_8.raw High NMQDMVEDYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 55 2.12 0.00 0 43 100 2 650.76764 1300.52800 -1.31 34.35 2663 2663 MS2 13/18 Linfeng_20120515_BRCA1_5.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 547 2.12 0.00 0 11 100 2 590.30475 1179.60222 1.48 30.48 1730 1730 MS2 12/18 Linfeng_20120515_BRCA1_4.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 448 2.13 0.00 0 23 100 2 692.34918 1383.69109 0.52 45.62 3686 3686 MS2 12/22 Linfeng_20120514_rIgG_10.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 503 2.14 0.00 0 27 100 2 633.32269 1265.63811 0.67 29.77 1743 1743 MS2 11/20 Linfeng_20120514_rIgG_6.raw High LNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 510 2.15 0.00 0 11 100 2 679.35181 1357.69634 0.36 38.36 2613 2613 MS2 14/22 Linfeng_20120515_BRCA1_6.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 626 2.15 0.00 0 11 100 2 590.30408 1179.60088 0.34 29.76 1741 1741 MS2 12/18 Linfeng_20120514_rIgG_6.raw High NMQDMVEDYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 56 2.15 0.00 0 18 100 2 650.76978 1300.53227 1.97 34.45 2443 2443 MS2 15/18 Linfeng_20120514_rIgG_9.raw High NMQDmVEDYR Unambiguous 1 1 IPI00220327.4 M5(Oxidation) CID 1.0000 0.0000 1 1 52 2.18 0.00 0 25 100 2 658.76801 1316.52873 3.12 33.75 2308 2308 MS2 12/18 Linfeng_20120514_rIgG_10.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 475 2.18 0.00 0 64 100 2 692.34930 1383.69133 0.70 45.58 3913 3913 MS2 14/22 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 537 2.19 0.00 0 3 100 2 590.30426 1179.60124 0.65 27.75 1652 1652 MS2 14/18 Linfeng_20120514_rIgG_8.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 540 2.19 0.00 0 8 100 2 590.30426 1179.60124 0.65 30.52 1793 1793 MS2 11/18 Linfeng_20120515_BRCA1_9.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 504 2.20 0.00 0 38 100 2 651.86127 1302.71526 0.05 49.29 5410 5410 MS2 16/22 Linfeng_20120515_BRCA1_8.raw High TNAENEFVTIKK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 602 2.20 0.00 1 2 100 2 697.36896 1393.73064 -1.14 23.50 1342 1342 MS2 14/22 Linfeng_20120514_rIgG_2.raw High LNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 584 2.20 0.00 0 9 100 2 679.35272 1357.69817 1.71 38.32 2988 2988 MS2 15/22 Linfeng_20120514_rIgG_9.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 571 2.20 0.00 0 46 100 2 651.86310 1302.71892 2.86 45.79 4232 4232 MS2 15/22 Linfeng_20120514_rIgG_2.raw High LALDLEIATYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 442 2.20 0.00 0 43 100 2 639.35986 1277.71245 1.89 45.72 4219 4219 MS2 13/20 Linfeng_20120514_rIgG_2.raw High LALDLEIATYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 404 2.20 0.00 0 35 100 2 639.35876 1277.71025 0.17 55.40 5227 5227 MS2 16/20 Linfeng_20120514_rIgG_4.raw High NMQDMVEDYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 40 2.21 0.00 0 35 100 2 650.76617 1300.52507 -3.57 33.86 2542 2542 MS2 12/18 Linfeng_20120515_BRCA1_5.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 512 2.21 0.00 0 13 100 2 633.32312 1265.63896 1.35 29.75 1720 1720 MS2 12/20 Linfeng_20120514_rIgG_4.raw High NmQDmVEDYR Unambiguous 1 1 IPI00220327.4 M2(Oxidation); M5(Oxidation) CID 1.0000 0.0000 1 1 30 2.21 0.00 0 26 100 2 666.76477 1332.52226 2.04 34.19 2513 2513 MS2 10/18 Linfeng_20120515_BRCA1_10.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 542 2.24 0.00 0 39 100 2 651.86066 1302.71404 -0.89 50.20 4612 4612 MS2 15/22 Linfeng_20120515_BRCA1_7.raw High NMQDMVEDYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 55 2.25 0.00 0 33 100 2 650.76880 1300.53032 0.47 34.35 2699 2699 MS2 12/18 Linfeng_20120515_BRCA1_8.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 556 2.26 0.00 0 15 100 2 590.30383 1179.60039 -0.07 27.69 1559 1559 MS2 11/18 Linfeng_20120514_rIgG_6.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 572 2.27 0.00 0 4 100 2 590.30432 1179.60137 0.76 31.05 1798 1798 MS2 12/18 Linfeng_20120514_rIgG_7.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 569 2.27 0.00 0 7 100 2 590.30469 1179.60210 1.38 30.97 1830 1830 MS2 12/18 Linfeng_20120515_BRCA1_9.raw High LNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 543 2.27 0.00 0 37 100 2 679.35229 1357.69731 1.08 38.32 2820 2820 MS2 16/22 Linfeng_20120515_BRCA1_9.raw High NMQDMVEDYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 50 2.28 0.00 0 24 100 2 650.76898 1300.53069 0.75 34.58 2463 2463 MS2 12/18 Linfeng_20120514_rIgG_9.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 524 2.28 0.00 0 37 100 2 633.32294 1265.63860 1.06 30.11 1701 1701 MS2 13/20 Linfeng_20120515_BRCA1_4.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 510 2.28 0.00 0 45 100 2 651.86108 1302.71489 -0.23 50.18 4931 4931 MS2 13/22 Linfeng_20120515_BRCA1_1.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 486 2.30 0.00 0 40 100 2 997.49329 1993.97930 1.30 56.71 5449 5449 MS2 11/30 Linfeng_20120514_rIgG_3.raw High LNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 535 2.30 0.00 0 5 100 2 679.35181 1357.69634 0.36 38.20 2687 2687 MS2 17/22 Linfeng_20120515_BRCA1_7.raw High NMQDMVEDYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 54 2.30 0.00 0 21 100 2 650.76990 1300.53252 2.16 33.44 2258 2258 MS2 12/18 Linfeng_20120514_rIgG_10.raw High LALDLEIATYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 389 2.30 0.00 0 42 100 2 639.35968 1277.71208 1.61 49.30 4688 4688 MS2 15/20 Linfeng_20120514_rIgG_5.raw High NMQDMVEDYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 52 2.30 0.00 0 42 100 2 650.76862 1300.52995 0.19 33.75 2313 2313 MS2 11/18 Linfeng_20120514_rIgG_9.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 551 2.31 0.00 0 6 100 2 590.30469 1179.60210 1.38 28.03 1694 1694 MS2 11/18 Linfeng_20120515_BRCA1_8.raw High NMQDmVEDYR Unambiguous 1 1 IPI00220327.4 M5(Oxidation) CID 1.0000 0.0000 1 1 50 2.31 0.00 0 42 100 2 658.76740 1316.52751 2.19 33.57 2300 2300 MS2 14/18 Linfeng_20120514_rIgG_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 583 2.31 0.00 0 21 100 2 590.30438 1179.60149 0.86 29.42 1797 1797 MS2 12/18 Linfeng_20120514_rIgG_8.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 599 2.31 0.00 0 25 100 2 590.30389 1179.60051 0.03 29.77 1666 1666 MS2 14/18 Linfeng_20120515_BRCA1_6.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 507 2.32 0.00 0 11 100 2 633.32343 1265.63957 1.83 29.85 1818 1818 MS2 10/20 Linfeng_20120514_rIgG_10.raw Medium THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 592 2.32 0.00 0 23 100 3 665.33075 1993.97770 0.49 49.41 5048 5048 MS2 20/60 Linfeng_20120514_rIgG_1.raw Medium QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 581 2.33 0.00 0 6 100 3 572.95642 1716.85471 2.06 34.57 2209 2209 MS2 21/56 Linfeng_20120514_rIgG_7.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 500 2.33 0.00 0 31 100 2 633.32312 1265.63896 1.35 30.03 1940 1940 MS2 11/20 Linfeng_20120515_BRCA1_8.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 528 2.33 0.00 0 60 100 2 633.32410 1265.64092 2.89 32.75 1992 1992 MS2 15/20 Linfeng_20120514_rIgG_4.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 415 2.34 0.00 0 18 100 2 692.34912 1383.69097 0.44 45.82 3129 3129 MS2 12/22 Linfeng_20120515_BRCA1_2.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 537 2.34 0.00 0 11 100 2 633.32324 1265.63921 1.54 32.02 2070 2070 MS2 14/20 Linfeng_20120514_rIgG_9.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 552 2.35 0.00 0 22 100 2 651.86249 1302.71770 1.92 46.11 3643 3643 MS2 12/22 Linfeng_20120515_BRCA1_7.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 510 2.35 0.00 0 0 100 2 858.93231 1716.85735 3.59 34.08 2361 2361 MS2 18/28 Linfeng_20120514_rIgG_10.raw Medium QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 576 2.36 0.00 0 10 100 3 572.95673 1716.85562 2.59 34.35 2210 2210 MS2 19/56 Linfeng_20120515_BRCA1_7.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 526 2.36 0.00 0 31 100 2 651.86102 1302.71477 -0.32 49.22 4999 4999 MS2 15/22 Linfeng_20120514_rIgG_1.raw High NMQDMVEDYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 48 2.36 0.00 0 39 100 2 650.76770 1300.52812 -1.22 33.85 2585 2585 MS2 14/18 Linfeng_20120515_BRCA1_8.raw High LLRDYQELMNTK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 510 2.36 0.00 1 41 100 2 762.40002 1523.79277 2.67 40.07 3383 3383 MS2 12/22 Linfeng_20120514_rIgG_2.raw Medium QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 575 2.37 0.00 0 15 100 3 572.95679 1716.85581 2.69 33.92 2350 2350 MS2 19/56 Linfeng_20120514_rIgG_1.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 527 2.37 0.00 0 36 100 2 633.32367 1265.64006 2.21 32.29 1997 1997 MS2 14/20 Linfeng_20120515_BRCA1_1.raw High LALDLEIATYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 352 2.38 0.00 0 15 100 2 639.35779 1277.70830 -1.36 49.80 4672 4672 MS2 14/20 Linfeng_20120514_rIgG_4.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 618 2.39 0.00 0 2 100 2 738.39685 1475.78642 0.75 29.40 1632 1632 MS2 18/22 Linfeng_20120515_BRCA1_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 480 2.39 0.00 0 9 100 2 590.30347 1179.59966 -0.69 28.06 1547 1547 MS2 11/18 Linfeng_20120515_BRCA1_3.raw Medium THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 606 2.39 0.00 0 32 100 3 665.33142 1993.97971 1.50 49.31 4466 4466 MS2 19/60 Linfeng_20120515_BRCA1_7.raw Medium NKLNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 606 2.39 0.00 1 5 100 3 533.94788 1599.82907 -2.92 44.44 3558 3558 MS2 23/52 Linfeng_20120515_BRCA1_1.raw Medium QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 610 2.39 0.00 0 7 100 3 572.95715 1716.85691 3.33 34.71 2246 2246 MS2 20/56 Linfeng_20120515_BRCA1_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 592 2.39 0.00 0 12 100 2 590.30432 1179.60137 0.76 30.65 1804 1804 MS2 13/18 Linfeng_20120515_BRCA1_9.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 608 2.40 0.00 0 3 100 2 738.39734 1475.78740 1.41 27.50 1543 1543 MS2 15/22 Linfeng_20120515_BRCA1_9.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 481 2.40 0.00 0 12 100 2 590.30310 1179.59892 -1.31 28.23 1566 1566 MS2 11/18 Linfeng_20120515_BRCA1_6.raw High NmQDmVEDYR Unambiguous 1 1 IPI00220327.4 M2(Oxidation); M5(Oxidation) CID 1.0000 0.0000 1 1 28 2.40 0.00 0 27 100 2 666.76563 1332.52397 3.33 33.54 2391 2391 MS2 12/18 Linfeng_20120515_BRCA1_10.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 476 2.40 0.00 0 25 100 2 651.86169 1302.71611 0.71 49.47 4826 4826 MS2 14/22 Linfeng_20120514_rIgG_9.raw High NMQDMVEDYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 58 2.40 0.00 0 40 100 2 650.76929 1300.53130 1.22 33.16 2289 2289 MS2 11/18 Linfeng_20120514_rIgG_3.raw Medium QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 569 2.40 0.00 0 10 100 3 572.95697 1716.85636 3.01 34.50 2171 2171 MS2 19/56 Linfeng_20120515_BRCA1_3.raw Medium QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 609 2.40 0.00 0 16 100 3 572.95618 1716.85398 1.63 35.14 2285 2285 MS2 20/56 Linfeng_20120514_rIgG_7.raw High LNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 592 2.41 0.00 0 26 100 2 679.35260 1357.69792 1.53 37.90 2925 2925 MS2 15/22 Linfeng_20120514_rIgG_3.raw High NmQDmVEDYR Unambiguous 1 1 IPI00220327.4 M2(Oxidation); M5(Oxidation) CID 1.0000 0.0000 1 1 29 2.41 0.00 0 16 100 2 666.76477 1332.52226 2.04 34.36 2471 2471 MS2 14/18 Linfeng_20120514_rIgG_3.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 513 2.41 0.00 0 13 100 2 633.32336 1265.63945 1.73 32.14 1835 1835 MS2 13/20 Linfeng_20120515_BRCA1_2.raw Medium THNLEPYFESFINNLRR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 645 2.41 0.00 1 2 78 3 717.36517 2150.08097 1.46 55.61 5834 5834 MS2 20/64 Linfeng_20120514_rIgG_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 601 2.41 0.00 0 6 100 2 590.30444 1179.60161 0.97 29.39 1650 1650 MS2 13/18 Linfeng_20120515_BRCA1_4.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 495 2.41 0.00 0 2 100 2 858.93079 1716.85430 1.81 34.24 2410 2410 MS2 16/28 Linfeng_20120514_rIgG_9.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 607 2.41 0.00 0 5 100 2 738.39606 1475.78484 -0.33 27.41 1507 1507 MS2 15/22 Linfeng_20120515_BRCA1_3.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 655 2.42 0.00 0 2 100 2 738.39600 1475.78472 -0.41 27.01 1501 1501 MS2 17/22 Linfeng_20120515_BRCA1_1.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 460 2.42 0.00 0 56 100 2 692.35052 1383.69377 2.47 45.42 4164 4164 MS2 13/22 Linfeng_20120514_rIgG_2.raw Medium THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 595 2.42 0.00 0 34 46 3 665.32965 1993.97440 -1.16 50.19 5271 5271 MS2 21/60 Linfeng_20120514_rIgG_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 595 2.42 0.00 0 13 100 2 590.30389 1179.60051 0.03 27.71 1627 1627 MS2 12/18 Linfeng_20120514_rIgG_10.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 527 2.42 0.00 0 21 100 2 651.86163 1302.71599 0.61 45.67 3926 3926 MS2 13/22 Linfeng_20120514_rIgG_3.raw High NMQDMVEDYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 58 2.43 0.00 0 42 100 2 650.76935 1300.53142 1.31 33.31 2268 2268 MS2 15/18 Linfeng_20120514_rIgG_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 527 2.43 0.00 0 3 100 2 590.30383 1179.60039 -0.07 28.21 1612 1612 MS2 12/18 Linfeng_20120515_BRCA1_9.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 502 2.43 0.00 0 14 100 2 651.86212 1302.71697 1.36 49.58 5179 5179 MS2 14/22 Linfeng_20120514_rIgG_8.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 532 2.44 0.00 0 49 100 2 651.86108 1302.71489 -0.23 49.23 4307 4307 MS2 14/22 Linfeng_20120514_rIgG_7.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 484 2.44 0.00 0 45 100 2 651.86157 1302.71587 0.52 49.38 4580 4580 MS2 17/22 Linfeng_20120515_BRCA1_9.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 606 2.44 0.00 0 14 100 2 590.30383 1179.60039 -0.07 27.83 1553 1553 MS2 15/18 Linfeng_20120514_rIgG_7.raw High LALDLEIATYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 436 2.44 0.00 0 15 100 2 639.35919 1277.71111 0.84 49.43 4493 4493 MS2 14/20 Linfeng_20120515_BRCA1_7.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 553 2.45 0.00 0 15 100 2 590.30432 1179.60137 0.76 29.06 1811 1811 MS2 13/18 Linfeng_20120515_BRCA1_8.raw Medium QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 539 2.45 0.00 0 18 100 3 572.95544 1716.85178 0.35 33.94 2497 2497 MS2 20/56 Linfeng_20120514_rIgG_2.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 411 2.45 0.00 0 22 100 2 692.34894 1383.69060 0.17 47.98 4738 4738 MS2 15/22 Linfeng_20120514_rIgG_8.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 543 2.46 0.00 0 4 100 2 590.30511 1179.60295 2.10 31.01 1864 1864 MS2 14/18 Linfeng_20120514_rIgG_6.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 551 2.46 0.00 0 19 100 2 590.30499 1179.60271 1.90 30.96 1954 1954 MS2 14/18 Linfeng_20120514_rIgG_9.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 520 2.46 0.00 0 9 100 2 590.30524 1179.60320 2.31 30.79 1805 1805 MS2 14/18 Linfeng_20120514_rIgG_5.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 558 2.46 0.00 0 13 100 2 590.30524 1179.60320 2.31 31.18 1985 1985 MS2 16/18 Linfeng_20120514_rIgG_8.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 529 2.47 0.00 0 57 100 2 633.32410 1265.64092 2.89 32.57 2224 2224 MS2 13/20 Linfeng_20120515_BRCA1_10.raw High NMQDMVEDYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 56 2.47 0.00 0 37 100 2 650.76996 1300.53264 2.25 33.41 2133 2133 MS2 14/18 Linfeng_20120515_BRCA1_1.raw Medium mSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 IPI00220327.4 M1(Oxidation); C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 210 2.47 0.00 0 2 100 3 861.05884 2581.16196 0.05 26.90 1578 1578 MS2 26/100 Linfeng_20120514_rIgG_2.raw High NmQDmVEDYR Unambiguous 1 1 IPI00220327.4 M2(Oxidation); M5(Oxidation) CID 1.0000 0.0000 1 1 26 2.47 0.00 0 34 100 2 666.76501 1332.52275 2.41 33.54 2295 2295 MS2 12/18 Linfeng_20120514_rIgG_1.raw High LALDLEIATYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 402 2.48 0.00 0 6 100 2 639.35950 1277.71172 1.32 49.41 4579 4579 MS2 15/20 Linfeng_20120515_BRCA1_4.raw Medium THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 607 2.49 0.00 0 68 100 3 665.33173 1993.98062 1.96 49.30 4986 4986 MS2 21/60 Linfeng_20120514_rIgG_6.raw Medium LDSELKNmQDMVEDYR Unambiguous 1 1 IPI00220327.4 M8(Oxidation) CID 1.0000 0.0000 1 1 213 2.49 0.00 1 7 100 3 667.96942 2001.89371 2.20 31.54 2077 2077 MS2 20/60 Linfeng_20120514_rIgG_3.raw High TNAENEFVTIKK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 563 2.49 0.00 1 0 100 2 697.36963 1393.73198 -0.18 24.79 1415 1415 MS2 13/22 Linfeng_20120514_rIgG_3.raw High LNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 587 2.49 0.00 0 35 100 2 679.35260 1357.69792 1.53 38.04 3365 3365 MS2 16/22 Linfeng_20120515_BRCA1_8.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 608 2.49 0.00 0 17 100 2 590.30469 1179.60210 1.38 30.24 1892 1892 MS2 13/18 Linfeng_20120515_BRCA1_5.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 529 2.50 0.00 0 27 100 2 651.86212 1302.71697 1.36 45.70 3644 3644 MS2 12/22 Linfeng_20120514_rIgG_4.raw High NMQDmVEDYR Unambiguous 1 1 IPI00220327.4 M5(Oxidation) CID 1.0000 0.0000 1 1 42 2.50 0.00 0 51 100 2 658.76685 1316.52641 1.36 33.15 2363 2363 MS2 12/18 Linfeng_20120514_rIgG_2.raw High LALDLEIATYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 369 2.50 0.00 0 24 100 2 639.35919 1277.71111 0.84 49.88 5145 5145 MS2 16/20 Linfeng_20120514_rIgG_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 551 2.50 0.00 0 14 100 2 590.30463 1179.60198 1.28 29.64 1670 1670 MS2 12/18 Linfeng_20120515_BRCA1_4.raw High LNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 601 2.51 0.00 0 7 100 2 679.35297 1357.69866 2.07 38.15 2616 2616 MS2 16/22 Linfeng_20120515_BRCA1_3.raw High LNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 522 2.51 0.00 0 0 100 2 679.35205 1357.69682 0.72 38.12 2618 2618 MS2 16/22 Linfeng_20120514_rIgG_7.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 616 2.52 0.00 0 7 100 2 738.39679 1475.78630 0.66 29.43 1640 1640 MS2 14/22 Linfeng_20120515_BRCA1_3.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 530 2.52 0.00 0 39 100 2 633.32275 1265.63823 0.77 32.96 2337 2337 MS2 12/20 Linfeng_20120514_rIgG_2.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 486 2.52 0.00 0 0 100 2 858.93140 1716.85552 2.52 35.14 2850 2850 MS2 13/28 Linfeng_20120515_BRCA1_8.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 531 2.52 0.00 0 17 100 2 651.86157 1302.71587 0.52 46.16 3740 3740 MS2 13/22 Linfeng_20120515_BRCA1_4.raw High NMQDMVEDYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 57 2.52 0.00 0 45 100 2 650.76794 1300.52861 -0.85 33.69 2324 2324 MS2 14/18 Linfeng_20120514_rIgG_8.raw Medium NKLNDLEDALQQAKEDLAR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 557 2.52 0.00 2 22 32 4 546.78601 2184.12221 -1.56 48.90 4558 4558 MS2 36/108 Linfeng_20120514_rIgG_3.raw High NMQDmVEDYR Unambiguous 1 1 IPI00220327.4 M5(Oxidation) CID 1.0000 0.0000 1 1 47 2.53 0.00 0 40 100 2 658.76794 1316.52861 3.03 33.55 2392 2392 MS2 12/18 Linfeng_20120515_BRCA1_10.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 593 2.54 0.00 0 19 100 2 590.30408 1179.60088 0.34 27.66 1550 1550 MS2 14/18 Linfeng_20120514_rIgG_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 587 2.54 0.00 0 0 100 2 590.30396 1179.60063 0.14 28.70 1614 1614 MS2 11/18 Linfeng_20120514_rIgG_5.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 546 2.54 0.00 0 4 100 2 590.30475 1179.60222 1.48 30.43 1761 1761 MS2 12/18 Linfeng_20120514_rIgG_5.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 561 2.54 0.00 0 2 100 2 590.30450 1179.60173 1.07 30.90 1782 1782 MS2 14/18 Linfeng_20120514_rIgG_7.raw High LALDLEIATYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 376 2.55 0.00 0 32 100 2 639.35974 1277.71221 1.70 49.28 4605 4605 MS2 15/20 Linfeng_20120514_rIgG_10.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 523 2.55 0.00 0 13 100 2 590.30530 1179.60332 2.41 31.21 1796 1796 MS2 13/18 Linfeng_20120515_BRCA1_4.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 510 2.55 0.00 0 4 100 2 858.93140 1716.85552 2.52 35.21 2860 2860 MS2 11/28 Linfeng_20120515_BRCA1_8.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 637 2.55 0.00 0 6 100 2 590.30402 1179.60076 0.24 27.73 1641 1641 MS2 14/18 Linfeng_20120514_rIgG_9.raw High LALDLEIATYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 392 2.55 0.00 0 31 100 2 639.35992 1277.71257 1.99 49.28 4982 4982 MS2 15/20 Linfeng_20120514_rIgG_6.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 504 2.55 0.00 0 7 100 2 858.93121 1716.85515 2.31 34.14 2172 2172 MS2 13/28 Linfeng_20120515_BRCA1_7.raw High NKLNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 560 2.55 0.00 1 17 100 2 800.42181 1599.83635 1.63 43.43 3678 3678 MS2 15/26 Linfeng_20120514_rIgG_8.raw High NMQDMVEDYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 58 2.56 0.00 0 34 100 2 650.76935 1300.53142 1.31 33.85 2114 2114 MS2 13/18 Linfeng_20120515_BRCA1_4.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 504 2.56 0.00 0 36 100 2 651.86127 1302.71526 0.05 49.37 5430 5430 MS2 14/22 Linfeng_20120515_BRCA1_8.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 554 2.56 0.00 0 16 100 2 738.39899 1475.79070 3.64 38.41 2975 2975 MS2 14/22 Linfeng_20120514_rIgG_1.raw High LNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 590 2.56 0.00 0 9 100 2 679.35278 1357.69829 1.80 38.04 2849 2849 MS2 15/22 Linfeng_20120514_rIgG_10.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 554 2.56 0.00 0 26 100 2 633.32355 1265.63982 2.02 32.28 1863 1863 MS2 14/20 Linfeng_20120515_BRCA1_6.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 449 2.56 0.00 0 44 100 2 692.34863 1383.68999 -0.27 45.78 3528 3528 MS2 13/22 Linfeng_20120515_BRCA1_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 581 2.57 0.00 0 6 100 2 590.30426 1179.60124 0.65 30.78 1733 1733 MS2 13/18 Linfeng_20120515_BRCA1_6.raw High NKLNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 573 2.57 0.00 1 13 100 2 800.41901 1599.83074 -1.88 43.94 3437 3437 MS2 20/26 Linfeng_20120515_BRCA1_1.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 572 2.57 0.00 0 47 100 2 651.86267 1302.71807 2.21 45.66 4206 4206 MS2 14/22 Linfeng_20120514_rIgG_2.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 508 2.58 0.00 0 11 100 2 651.86145 1302.71562 0.33 45.96 3962 3962 MS2 15/22 Linfeng_20120514_rIgG_3.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 611 2.58 0.00 0 8 100 2 738.39771 1475.78813 1.91 27.09 1565 1565 MS2 15/22 Linfeng_20120514_rIgG_9.raw High LALDLEIATYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 397 2.59 0.00 0 36 100 2 639.35901 1277.71074 0.56 55.40 5176 5176 MS2 17/20 Linfeng_20120514_rIgG_3.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 486 2.59 0.00 0 8 100 2 633.32294 1265.63860 1.06 32.37 2250 2250 MS2 14/20 Linfeng_20120514_rIgG_2.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 535 2.59 0.00 0 15 100 2 633.32361 1265.63994 2.12 29.54 1863 1863 MS2 11/20 Linfeng_20120514_rIgG_3.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 481 2.59 0.00 0 49 100 2 651.86163 1302.71599 0.61 49.23 4769 4769 MS2 16/22 Linfeng_20120514_rIgG_9.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 552 2.59 0.00 0 39 100 2 633.32361 1265.63994 2.12 32.03 1986 1986 MS2 12/20 Linfeng_20120514_rIgG_6.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 409 2.59 0.00 0 0 100 2 829.40228 1657.79729 2.62 33.11 1915 1915 MS2 17/32 Linfeng_20120515_BRCA1_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 568 2.60 0.00 0 13 100 2 590.30469 1179.60210 1.38 30.13 1882 1882 MS2 12/18 Linfeng_20120515_BRCA1_5.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 581 2.61 0.00 0 9 100 3 572.95648 1716.85489 2.16 34.17 2357 2357 MS2 25/56 Linfeng_20120514_rIgG_6.raw High LNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 602 2.61 0.00 0 23 100 2 679.35321 1357.69914 2.43 37.93 3151 3151 MS2 17/22 Linfeng_20120515_BRCA1_10.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 531 2.61 0.00 0 12 100 2 590.30487 1179.60246 1.69 31.21 1766 1766 MS2 13/18 Linfeng_20120515_BRCA1_6.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 569 2.62 0.00 0 26 100 2 651.86139 1302.71550 0.24 46.11 3739 3739 MS2 14/22 Linfeng_20120514_rIgG_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 558 2.63 0.00 0 4 100 2 590.30469 1179.60210 1.38 29.71 1717 1717 MS2 13/18 Linfeng_20120514_rIgG_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 514 2.63 0.00 0 9 100 2 590.30524 1179.60320 2.31 31.07 1780 1780 MS2 14/18 Linfeng_20120515_BRCA1_4.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 507 2.63 0.00 0 48 100 2 651.86237 1302.71745 1.74 49.27 4980 4980 MS2 17/22 Linfeng_20120514_rIgG_6.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 443 2.63 0.00 0 58 100 2 692.34869 1383.69011 -0.18 47.62 4939 4939 MS2 13/22 Linfeng_20120515_BRCA1_8.raw High GSGGGSSGGSIGGR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 286 2.64 0.00 0 1 100 2 546.75458 1092.50188 -0.95 12.76 738 738 MS2 16/26 Linfeng_20120514_rIgG_3.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 572 2.64 0.00 0 35 100 3 572.95679 1716.85581 2.69 35.12 2302 2302 MS2 18/56 Linfeng_20120515_BRCA1_4.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 504 2.64 0.00 0 6 100 2 633.32336 1265.63945 1.73 31.31 1864 1864 MS2 15/20 Linfeng_20120515_BRCA1_9.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 568 2.64 0.00 0 9 100 2 590.30450 1179.60173 1.07 30.33 1880 1880 MS2 12/18 Linfeng_20120514_rIgG_9.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 485 2.64 0.00 0 14 100 2 997.49500 1993.98271 3.01 49.63 5175 5175 MS2 17/30 Linfeng_20120514_rIgG_2.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 507 2.64 0.00 0 25 100 2 633.32288 1265.63848 0.96 30.57 1936 1936 MS2 14/20 Linfeng_20120515_BRCA1_5.raw High LALDLEIATYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 369 2.64 0.00 0 8 100 2 639.35889 1277.71050 0.36 49.25 4659 4659 MS2 17/20 Linfeng_20120514_rIgG_3.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 487 2.65 0.00 0 39 100 2 651.86176 1302.71623 0.80 49.29 5111 5111 MS2 16/22 Linfeng_20120514_rIgG_8.raw High NKLNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 588 2.65 0.00 1 14 100 2 800.42047 1599.83367 -0.05 43.89 3760 3760 MS2 15/26 Linfeng_20120514_rIgG_8.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 625 2.65 0.00 0 4 100 2 590.30414 1179.60100 0.45 29.22 1690 1690 MS2 14/18 Linfeng_20120515_BRCA1_1.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 498 2.65 0.00 0 28 100 2 633.32367 1265.64006 2.21 32.44 1915 1915 MS2 14/20 Linfeng_20120515_BRCA1_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 554 2.65 0.00 0 4 100 2 590.30396 1179.60063 0.14 27.98 1659 1659 MS2 14/18 Linfeng_20120515_BRCA1_10.raw High LNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 601 2.66 0.00 0 12 100 2 679.35327 1357.69927 2.52 37.75 3068 3068 MS2 14/22 Linfeng_20120514_rIgG_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 539 2.66 0.00 0 26 100 2 590.30511 1179.60295 2.10 31.22 1982 1982 MS2 13/18 Linfeng_20120514_rIgG_9.raw High NKLNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 572 2.66 0.00 1 21 100 2 800.42126 1599.83525 0.94 42.42 3860 3860 MS2 13/26 Linfeng_20120515_BRCA1_5.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 427 2.66 0.00 0 42 100 2 692.34900 1383.69072 0.26 45.46 3996 3996 MS2 14/22 Linfeng_20120514_rIgG_6.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 531 2.67 0.00 0 37 100 2 633.32361 1265.63994 2.12 32.52 2161 2161 MS2 11/20 Linfeng_20120514_rIgG_1.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 490 2.67 0.00 0 15 100 2 692.34961 1383.69194 1.14 45.77 3646 3646 MS2 17/22 Linfeng_20120515_BRCA1_4.raw High NMQDMVEDYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 49 2.67 0.00 0 36 100 2 650.76886 1300.53044 0.56 33.86 2335 2335 MS2 12/18 Linfeng_20120514_rIgG_9.raw High LALDLEIATYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 405 2.67 0.00 0 47 100 2 639.35901 1277.71074 0.56 55.47 5239 5239 MS2 18/20 Linfeng_20120514_rIgG_4.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 648 2.67 0.00 0 10 100 2 738.39551 1475.78374 -1.07 26.61 1507 1507 MS2 13/22 Linfeng_20120514_rIgG_1.raw High LALDLEIATYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 397 2.68 0.00 0 8 100 2 639.35962 1277.71196 1.51 49.23 4536 4536 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 558 2.68 0.00 0 22 100 2 590.30505 1179.60283 2.00 29.93 1860 1860 MS2 13/18 Linfeng_20120515_BRCA1_5.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 517 2.69 0.00 0 9 100 2 858.93213 1716.85698 3.38 35.24 2276 2276 MS2 15/28 Linfeng_20120515_BRCA1_3.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 531 2.69 0.00 0 3 100 2 858.93042 1716.85356 1.39 33.91 2398 2398 MS2 14/28 Linfeng_20120514_rIgG_3.raw High NMQDMVEDYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 52 2.69 0.00 0 43 100 2 650.76898 1300.53069 0.75 33.78 2035 2035 MS2 14/18 Linfeng_20120515_BRCA1_6.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 485 2.70 0.00 0 32 100 2 692.34991 1383.69255 1.58 45.72 3781 3781 MS2 12/22 Linfeng_20120514_rIgG_5.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 550 2.70 0.00 0 39 100 2 651.86194 1302.71660 1.08 45.91 3679 3679 MS2 15/22 Linfeng_20120515_BRCA1_4.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 571 2.70 0.00 0 5 100 2 738.39880 1475.79033 3.39 27.09 1553 1553 MS2 16/22 Linfeng_20120515_BRCA1_10.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 527 2.71 0.00 0 37 100 2 651.86224 1302.71721 1.55 45.89 4251 4251 MS2 13/22 Linfeng_20120514_rIgG_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 574 2.71 0.00 0 17 100 2 590.30444 1179.60161 0.97 29.47 1712 1712 MS2 13/18 Linfeng_20120514_rIgG_6.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 559 2.71 0.00 0 7 100 2 590.30414 1179.60100 0.45 29.09 1611 1611 MS2 14/18 Linfeng_20120515_BRCA1_2.raw High LNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 604 2.71 0.00 0 7 100 2 679.35272 1357.69817 1.71 38.03 3381 3381 MS2 16/22 Linfeng_20120515_BRCA1_5.raw High NKLNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 565 2.71 0.00 1 4 100 2 800.42126 1599.83525 0.94 43.31 3048 3048 MS2 17/26 Linfeng_20120515_BRCA1_7.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 606 2.71 0.00 0 20 100 2 590.30389 1179.60051 0.03 29.53 1676 1676 MS2 14/18 Linfeng_20120514_rIgG_7.raw High NMQDMVEDYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 45 2.71 0.00 0 44 100 2 650.76758 1300.52788 -1.41 33.65 2253 2253 MS2 15/18 Linfeng_20120514_rIgG_6.raw High NKLNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 542 2.72 0.00 1 0 100 2 800.42004 1599.83281 -0.59 43.43 3348 3348 MS2 18/26 Linfeng_20120515_BRCA1_1.raw High KQISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 648 2.72 0.00 1 22 100 3 615.65442 1844.94870 1.38 31.48 2035 2035 MS2 21/60 Linfeng_20120514_rIgG_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 530 2.72 0.00 0 7 100 2 590.30383 1179.60039 -0.07 28.33 1712 1712 MS2 12/18 Linfeng_20120515_BRCA1_5.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 563 2.72 0.00 0 15 100 2 590.30444 1179.60161 0.97 29.38 1703 1703 MS2 15/18 Linfeng_20120514_rIgG_6.raw High LALDLEIATYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 485 2.72 0.00 0 2 1 2 639.35791 1277.70854 -1.16 48.96 5002 5002 MS2 15/20 Linfeng_20120515_BRCA1_10.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 630 2.72 0.00 0 16 100 2 738.39728 1475.78728 1.33 30.01 1745 1745 MS2 14/22 Linfeng_20120514_rIgG_4.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 523 2.72 0.00 0 6 100 2 633.32355 1265.63982 2.02 31.14 1774 1774 MS2 16/20 Linfeng_20120515_BRCA1_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 560 2.73 0.00 0 17 100 2 590.30450 1179.60173 1.07 29.35 1809 1809 MS2 15/18 Linfeng_20120515_BRCA1_5.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 614 2.73 0.00 0 15 100 3 572.95709 1716.85672 3.23 34.27 2303 2303 MS2 25/56 Linfeng_20120514_rIgG_5.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 663 2.73 0.00 0 21 100 2 590.30389 1179.60051 0.03 27.74 1556 1556 MS2 14/18 Linfeng_20120515_BRCA1_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 623 2.74 0.00 0 6 100 2 590.30402 1179.60076 0.24 28.74 1732 1732 MS2 13/18 Linfeng_20120514_rIgG_9.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 487 2.74 0.00 0 5 100 2 633.32306 1265.63884 1.25 32.04 1891 1891 MS2 13/20 Linfeng_20120514_rIgG_7.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 502 2.74 0.00 0 5 100 2 858.93170 1716.85613 2.88 35.15 2321 2321 MS2 16/28 Linfeng_20120515_BRCA1_7.raw High NKLNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 602 2.74 0.00 1 6 100 3 533.94958 1599.83420 0.28 44.29 3950 3950 MS2 22/52 Linfeng_20120514_rIgG_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 468 2.74 0.00 0 4 100 2 590.30328 1179.59929 -1.00 28.02 1558 1558 MS2 13/18 Linfeng_20120515_BRCA1_7.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 533 2.74 0.00 0 9 100 2 590.30420 1179.60112 0.55 29.75 1735 1735 MS2 12/18 Linfeng_20120515_BRCA1_1.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 618 2.75 0.00 0 8 100 2 738.39740 1475.78752 1.49 34.57 2501 2501 MS2 15/22 Linfeng_20120514_rIgG_3.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 618 2.75 0.00 0 5 100 2 738.39581 1475.78435 -0.66 27.42 1643 1643 MS2 13/22 Linfeng_20120515_BRCA1_5.raw High LNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 554 2.75 0.00 0 9 100 2 679.35352 1357.69975 2.87 37.75 2870 2870 MS2 16/22 Linfeng_20120514_rIgG_1.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 527 2.76 0.00 0 30 100 2 651.86084 1302.71440 -0.61 45.74 3864 3864 MS2 12/22 Linfeng_20120515_BRCA1_1.raw High LALDLEIATYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 345 2.76 0.00 0 39 100 2 639.35815 1277.70903 -0.78 49.43 4681 4681 MS2 16/20 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 581 2.76 0.00 0 4 100 2 590.30469 1179.60210 1.38 29.77 1722 1722 MS2 14/18 Linfeng_20120514_rIgG_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 532 2.76 0.00 0 20 100 2 590.30499 1179.60271 1.90 30.98 1956 1956 MS2 14/18 Linfeng_20120514_rIgG_8.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 666 2.77 0.00 0 5 100 2 738.39569 1475.78411 -0.82 27.21 1509 1509 MS2 18/22 Linfeng_20120515_BRCA1_7.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 504 2.77 0.00 0 34 100 2 633.32385 1265.64043 2.50 32.47 2156 2156 MS2 13/20 Linfeng_20120514_rIgG_1.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 497 2.78 0.00 0 12 100 2 633.32269 1265.63811 0.67 29.41 1791 1791 MS2 14/20 Linfeng_20120514_rIgG_1.raw High NMQDMVEDYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 54 2.78 0.00 0 27 100 2 650.76825 1300.52922 -0.38 33.85 2045 2045 MS2 13/18 Linfeng_20120515_BRCA1_6.raw High NMQDMVEDYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 54 2.78 0.00 0 11 100 2 650.76978 1300.53227 1.97 35.20 2586 2586 MS2 13/18 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 570 2.78 0.00 0 12 100 2 590.30542 1179.60356 2.62 31.18 1885 1885 MS2 15/18 Linfeng_20120514_rIgG_6.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 495 2.78 0.00 0 38 100 2 633.32379 1265.64031 2.41 32.87 2241 2241 MS2 12/20 Linfeng_20120514_rIgG_3.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 563 2.78 0.00 0 10 100 3 572.95697 1716.85636 3.01 34.73 2252 2252 MS2 26/56 Linfeng_20120514_rIgG_4.raw Medium THNLEPYFESFINNLRR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 646 2.79 0.00 1 21 100 4 538.27631 2150.08339 2.59 56.15 5983 5983 MS2 27/96 Linfeng_20120514_rIgG_2.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 608 2.80 0.00 0 33 100 2 738.39673 1475.78618 0.58 29.88 1686 1686 MS2 17/22 Linfeng_20120515_BRCA1_4.raw High LNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 519 2.80 0.00 0 2 100 2 679.35223 1357.69719 0.99 38.12 2441 2441 MS2 16/22 Linfeng_20120515_BRCA1_2.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 553 2.80 0.00 0 50 100 2 651.86212 1302.71697 1.36 45.57 4023 4023 MS2 17/22 Linfeng_20120514_rIgG_6.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 435 2.80 0.00 0 38 100 2 692.34906 1383.69084 0.35 47.75 4137 4137 MS2 13/22 Linfeng_20120515_BRCA1_9.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 507 2.80 0.00 0 0 100 2 858.93170 1716.85613 2.88 34.35 2126 2126 MS2 15/28 Linfeng_20120515_BRCA1_6.raw High NKLNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 572 2.81 0.00 1 0 100 2 800.42102 1599.83476 0.63 43.38 3118 3118 MS2 16/26 Linfeng_20120515_BRCA1_4.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 603 2.81 0.00 0 20 100 3 665.33173 1993.98062 1.96 49.40 5011 5011 MS2 22/60 Linfeng_20120514_rIgG_6.raw High NMQDMVEDYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 57 2.81 0.00 0 8 100 2 650.77014 1300.53301 2.53 34.86 2198 2198 MS2 13/18 Linfeng_20120515_BRCA1_6.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 611 2.81 0.00 0 26 100 3 665.33112 1993.97879 1.04 49.18 4648 4648 MS2 22/60 Linfeng_20120514_rIgG_3.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 497 2.81 0.00 0 37 100 2 651.86169 1302.71611 0.71 49.18 4433 4433 MS2 19/22 Linfeng_20120515_BRCA1_7.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 627 2.81 0.00 0 0 100 2 738.39606 1475.78484 -0.33 27.26 1501 1501 MS2 17/22 Linfeng_20120515_BRCA1_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 561 2.81 0.00 0 26 100 2 590.30493 1179.60259 1.79 31.83 2173 2173 MS2 14/18 Linfeng_20120514_rIgG_2.raw High NKLNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 545 2.82 0.00 1 14 100 2 800.42181 1599.83635 1.63 43.21 3505 3505 MS2 17/26 Linfeng_20120514_rIgG_6.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 496 2.82 0.00 0 5 100 2 633.32367 1265.64006 2.21 31.87 2018 2018 MS2 15/20 Linfeng_20120514_rIgG_10.raw High NKLNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 507 2.83 0.00 1 18 100 2 800.42194 1599.83660 1.78 43.33 3787 3787 MS2 19/26 Linfeng_20120514_rIgG_2.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 545 2.83 0.00 0 47 100 2 651.86163 1302.71599 0.61 45.62 4162 4162 MS2 17/22 Linfeng_20120515_BRCA1_10.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 494 2.83 0.00 0 4 100 2 858.93268 1716.85808 4.02 34.40 2268 2268 MS2 16/28 Linfeng_20120515_BRCA1_9.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 641 2.83 0.00 0 10 100 2 738.39642 1475.78557 0.17 35.84 2793 2793 MS2 16/22 Linfeng_20120514_rIgG_2.raw Medium THNLEPYFESFINNLRR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 650 2.83 0.00 1 13 76 4 538.27618 2150.08291 2.36 55.73 5872 5872 MS2 26/96 Linfeng_20120514_rIgG_2.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 493 2.83 0.00 0 46 100 2 651.86163 1302.71599 0.61 49.21 4588 4588 MS2 17/22 Linfeng_20120514_rIgG_10.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 605 2.84 0.00 0 1 1 3 665.32983 1993.97495 -0.88 49.00 4887 4887 MS2 21/60 Linfeng_20120514_rIgG_6.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 507 2.84 0.00 0 9 100 2 651.85944 1302.71160 -2.76 49.90 5234 5234 MS2 18/22 Linfeng_20120515_BRCA1_10.raw High NMQDmVEDYR Unambiguous 1 1 IPI00220327.4 M5(Oxidation) CID 1.0000 0.0000 1 1 48 2.84 0.00 0 17 100 2 658.76740 1316.52751 2.19 34.33 2466 2466 MS2 14/18 Linfeng_20120514_rIgG_3.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 580 2.84 0.00 0 3 3 2 651.86121 1302.71514 -0.04 49.06 5028 5028 MS2 17/22 Linfeng_20120514_rIgG_2.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 490 2.84 0.00 0 29 100 2 997.49573 1993.98418 3.74 56.35 5397 5397 MS2 12/30 Linfeng_20120514_rIgG_3.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 505 2.84 0.00 0 12 100 2 633.32343 1265.63957 1.83 32.57 2200 2200 MS2 17/20 Linfeng_20120514_rIgG_3.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 481 2.85 0.00 0 10 100 2 633.32318 1265.63909 1.44 31.01 1961 1961 MS2 13/20 Linfeng_20120514_rIgG_9.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 504 2.85 0.00 0 80 100 2 633.32385 1265.64043 2.50 32.70 2242 2242 MS2 13/20 Linfeng_20120515_BRCA1_10.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 453 2.85 0.00 0 41 100 2 692.34857 1383.68987 -0.36 45.24 4462 4462 MS2 17/22 Linfeng_20120515_BRCA1_5.raw High LNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 591 2.85 0.00 0 3 100 2 679.35321 1357.69914 2.43 37.95 2964 2964 MS2 14/22 Linfeng_20120514_rIgG_6.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 665 2.85 0.00 0 49 100 2 738.39667 1475.78606 0.50 29.99 1852 1852 MS2 16/22 Linfeng_20120514_rIgG_1.raw High LALDLEIATYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 383 2.85 0.00 0 13 100 2 639.35876 1277.71025 0.17 49.19 4746 4746 MS2 16/20 Linfeng_20120515_BRCA1_1.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 513 2.85 0.00 0 16 100 2 633.32355 1265.63982 2.02 31.05 1999 1999 MS2 15/20 Linfeng_20120515_BRCA1_5.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 500 2.85 0.00 0 35 100 2 651.86188 1302.71648 0.99 55.32 5757 5757 MS2 18/22 Linfeng_20120514_rIgG_2.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 569 2.85 0.00 0 4 18 2 651.86096 1302.71465 -0.42 49.03 4250 4250 MS2 14/22 Linfeng_20120514_rIgG_7.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 578 2.86 0.00 0 6 100 2 590.30414 1179.60100 0.45 28.76 1741 1741 MS2 13/18 Linfeng_20120514_rIgG_8.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 510 2.86 0.00 0 34 100 2 651.86346 1302.71965 3.42 45.77 4118 4118 MS2 15/22 Linfeng_20120514_rIgG_1.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 565 2.86 0.00 0 15 100 2 651.86115 1302.71501 -0.14 45.73 3931 3931 MS2 16/22 Linfeng_20120514_rIgG_3.raw High LALDLEIATYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 390 2.86 0.00 0 17 100 2 639.35938 1277.71147 1.13 49.20 5090 5090 MS2 17/20 Linfeng_20120515_BRCA1_10.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 604 2.86 0.00 0 1 3 3 665.32983 1993.97495 -0.88 49.00 4261 4261 MS2 22/60 Linfeng_20120515_BRCA1_6.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 517 2.86 0.00 0 5 100 2 590.30499 1179.60271 1.90 30.58 1781 1781 MS2 15/18 Linfeng_20120514_rIgG_5.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 646 2.87 0.00 0 2 100 2 738.39557 1475.78386 -0.99 27.46 1518 1518 MS2 17/22 Linfeng_20120515_BRCA1_6.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 543 2.87 0.00 0 23 100 2 590.30487 1179.60246 1.69 31.00 1959 1959 MS2 13/18 Linfeng_20120514_rIgG_9.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 521 2.87 0.00 0 6 100 2 858.93066 1716.85405 1.67 34.07 2398 2398 MS2 12/28 Linfeng_20120514_rIgG_8.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 550 2.87 0.00 0 4 100 2 590.30542 1179.60356 2.62 30.98 1870 1870 MS2 15/18 Linfeng_20120515_BRCA1_1.raw High SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 546 2.87 0.00 2 6 100 3 834.42145 2501.24979 -0.85 39.16 2939 2939 MS2 26/84 Linfeng_20120514_rIgG_10.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 469 2.88 0.00 0 40 100 2 692.34845 1383.68962 -0.53 47.79 4564 4564 MS2 13/22 Linfeng_20120514_rIgG_6.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 526 2.88 0.00 0 27 100 2 633.32367 1265.64006 2.21 31.97 1976 1976 MS2 15/20 Linfeng_20120514_rIgG_6.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 509 2.88 0.00 0 2 100 2 858.93121 1716.85515 2.31 34.15 2033 2033 MS2 18/28 Linfeng_20120515_BRCA1_2.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 477 2.88 0.00 0 50 100 2 692.34821 1383.68913 -0.89 45.54 3817 3817 MS2 16/22 Linfeng_20120515_BRCA1_1.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 432 2.88 0.00 0 0 100 2 829.39941 1657.79155 -0.84 33.58 2176 2176 MS2 17/32 Linfeng_20120514_rIgG_5.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 521 2.88 0.00 0 3 75 2 633.32355 1265.63982 2.02 30.88 1965 1965 MS2 18/20 Linfeng_20120515_BRCA1_10.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 583 2.88 0.00 0 6 100 2 590.30438 1179.60149 0.86 30.01 1854 1854 MS2 14/18 Linfeng_20120515_BRCA1_10.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 492 2.88 0.00 0 1 100 2 858.93103 1716.85478 2.10 35.15 2287 2287 MS2 17/28 Linfeng_20120514_rIgG_7.raw High LALDLEIATYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 468 2.88 0.00 0 32 100 2 639.35785 1277.70842 -1.26 49.19 4993 4993 MS2 17/20 Linfeng_20120514_rIgG_1.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 491 2.89 0.00 0 2 100 2 633.32349 1265.63970 1.92 31.78 1893 1893 MS2 18/20 Linfeng_20120514_rIgG_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 551 2.89 0.00 0 4 100 2 590.30475 1179.60222 1.48 30.63 1741 1741 MS2 14/18 Linfeng_20120515_BRCA1_4.raw High LNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 563 2.89 0.00 0 4 100 2 679.35162 1357.69597 0.09 39.15 2695 2695 MS2 17/22 Linfeng_20120515_BRCA1_3.raw High LNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 524 2.89 0.00 0 2 100 2 679.35217 1357.69707 0.90 38.85 3454 3454 MS2 17/22 Linfeng_20120515_BRCA1_8.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 577 2.90 0.00 0 16 100 2 590.30560 1179.60393 2.93 30.82 1935 1935 MS2 15/18 Linfeng_20120514_rIgG_9.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 503 2.90 0.00 0 10 100 2 633.32367 1265.64006 2.21 31.82 2052 2052 MS2 16/20 Linfeng_20120514_rIgG_8.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 646 2.90 0.00 0 0 100 2 738.39630 1475.78533 0.00 27.37 1499 1499 MS2 15/22 Linfeng_20120515_BRCA1_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 556 2.90 0.00 0 11 100 2 590.30457 1179.60185 1.17 29.17 1759 1759 MS2 14/18 Linfeng_20120514_rIgG_10.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 622 2.91 0.00 0 24 100 3 665.33191 1993.98117 2.24 56.11 5404 5404 MS2 24/60 Linfeng_20120514_rIgG_4.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 515 2.91 0.00 0 3 100 2 858.93134 1716.85539 2.45 35.17 2159 2159 MS2 16/28 Linfeng_20120515_BRCA1_2.raw High LDSELKNmQDmVEDYR Unambiguous 1 1 IPI00220327.4 M8(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 141 2.91 0.00 1 18 100 3 673.29999 2017.88541 0.58 25.91 1484 1484 MS2 22/60 Linfeng_20120514_rIgG_3.raw High LALDLEIATYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 385 2.91 0.00 0 18 100 2 639.35974 1277.71221 1.70 49.24 5085 5085 MS2 16/20 Linfeng_20120514_rIgG_2.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 462 2.92 0.00 0 18 100 2 692.34619 1383.68511 -3.80 46.88 4873 4873 MS2 18/22 Linfeng_20120515_BRCA1_5.raw High NMQDMVEDYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 59 2.92 0.00 0 47 100 2 650.76935 1300.53142 1.31 33.55 2066 2066 MS2 14/18 Linfeng_20120514_rIgG_7.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 567 2.92 0.00 0 3 100 2 590.30402 1179.60076 0.24 28.91 1645 1645 MS2 16/18 Linfeng_20120515_BRCA1_7.raw High GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 16 2.92 0.00 0 2 100 3 795.32184 2383.95096 -0.42 16.32 949 949 MS2 31/120 Linfeng_20120514_rIgG_2.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 457 2.92 0.00 0 58 100 2 692.34937 1383.69145 0.79 45.62 3626 3626 MS2 15/22 Linfeng_20120514_rIgG_4.raw High NMQDMVEDYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 57 2.93 0.00 0 7 100 2 650.77020 1300.53313 2.63 34.44 2420 2420 MS2 15/18 Linfeng_20120514_rIgG_10.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 488 2.93 0.00 0 38 100 2 651.86200 1302.71672 1.18 49.43 5444 5444 MS2 17/22 Linfeng_20120515_BRCA1_8.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 505 2.93 0.00 0 49 100 2 651.86023 1302.71318 -1.54 49.73 5636 5636 MS2 17/22 Linfeng_20120515_BRCA1_5.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 510 2.93 0.00 0 29 100 2 651.86176 1302.71623 0.80 49.26 4348 4348 MS2 18/22 Linfeng_20120515_BRCA1_6.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 462 2.93 0.00 0 40 100 2 692.34930 1383.69133 0.70 47.92 4717 4717 MS2 17/22 Linfeng_20120515_BRCA1_10.raw Medium SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 592 2.93 0.00 2 6 100 4 626.06995 2501.25796 2.42 38.85 3232 3232 MS2 26/126 Linfeng_20120514_rIgG_2.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 472 2.94 0.00 0 16 100 2 692.34808 1383.68889 -1.06 47.39 4467 4467 MS2 17/22 Linfeng_20120514_rIgG_6.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 494 2.94 0.00 0 30 100 2 651.86151 1302.71575 0.43 49.29 5531 5531 MS2 17/22 Linfeng_20120515_BRCA1_5.raw High WELLQQVDTSTR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 502 2.94 0.00 0 73 100 2 738.37976 1475.75224 2.24 55.40 5777 5777 MS2 16/22 Linfeng_20120514_rIgG_2.raw High NMQDMVEDYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 59 2.94 0.00 0 25 100 2 650.76935 1300.53142 1.31 32.92 2332 2332 MS2 15/18 Linfeng_20120514_rIgG_2.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 615 2.94 0.00 0 37 100 3 665.33209 1993.98172 2.51 56.53 6023 6023 MS2 22/60 Linfeng_20120514_rIgG_6.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 505 2.94 0.00 0 31 100 2 692.34778 1383.68828 -1.50 47.72 4260 4260 MS2 15/22 Linfeng_20120514_rIgG_5.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 606 2.95 0.00 0 16 75 3 665.33038 1993.97660 -0.06 49.18 5083 5083 MS2 27/60 Linfeng_20120515_BRCA1_10.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 601 2.95 0.00 0 6 100 2 738.39722 1475.78716 1.24 38.37 3161 3161 MS2 10/22 Linfeng_20120514_rIgG_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 561 2.95 0.00 0 5 100 2 590.30524 1179.60320 2.31 30.70 1831 1831 MS2 15/18 Linfeng_20120514_rIgG_6.raw High NMQDMVEDYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 56 2.95 0.00 0 23 100 2 650.76978 1300.53227 1.97 33.36 2359 2359 MS2 14/18 Linfeng_20120515_BRCA1_10.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 504 2.95 0.00 0 32 100 2 692.34790 1383.68852 -1.33 47.66 4660 4660 MS2 13/22 Linfeng_20120514_rIgG_8.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 620 2.95 0.00 0 40 100 2 738.39703 1475.78679 1.00 30.05 1770 1770 MS2 16/22 Linfeng_20120515_BRCA1_1.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 445 2.95 0.00 0 13 100 2 692.34851 1383.68974 -0.45 47.93 4399 4399 MS2 18/22 Linfeng_20120514_rIgG_9.raw High mSGEcAPNVSVSVSTSHTTISGGGSR Unambiguous 1 1 IPI00220327.4 M1(Oxidation); C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 199 2.95 0.00 0 5 100 3 861.05829 2581.16031 -0.58 26.78 1520 1520 MS2 28/100 Linfeng_20120514_rIgG_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 576 2.95 0.00 0 12 100 2 590.30432 1179.60137 0.76 30.19 1843 1843 MS2 15/18 Linfeng_20120514_rIgG_10.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 526 2.95 0.00 0 14 100 2 633.32361 1265.63994 2.12 32.14 1879 1879 MS2 16/20 Linfeng_20120515_BRCA1_4.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 579 2.96 0.00 0 5 100 3 572.95654 1716.85508 2.27 34.51 2199 2199 MS2 21/56 Linfeng_20120514_rIgG_7.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 616 2.96 0.00 0 3 100 3 572.95715 1716.85691 3.33 34.29 2196 2196 MS2 26/56 Linfeng_20120514_rIgG_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 582 2.96 0.00 0 5 100 2 590.30481 1179.60234 1.59 31.00 1749 1749 MS2 15/18 Linfeng_20120515_BRCA1_6.raw High NmQDmVEDYR Unambiguous 1 1 IPI00220327.4 M2(Oxidation); M5(Oxidation) CID 1.0000 0.0000 1 1 22 2.97 0.00 0 20 100 2 666.76324 1332.51921 -0.25 34.14 2529 2529 MS2 14/18 Linfeng_20120514_rIgG_2.raw High LNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 586 2.97 0.00 0 6 100 2 679.35242 1357.69756 1.26 39.04 3153 3153 MS2 17/22 Linfeng_20120514_rIgG_8.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 499 2.97 0.00 0 27 100 2 633.32318 1265.63909 1.44 30.67 1946 1946 MS2 15/20 Linfeng_20120515_BRCA1_5.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 465 2.97 0.00 0 49 100 2 692.34808 1383.68889 -1.06 45.75 3459 3459 MS2 13/22 Linfeng_20120515_BRCA1_6.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 527 2.97 0.00 0 27 100 2 651.86176 1302.71623 0.80 45.72 3550 3550 MS2 17/22 Linfeng_20120515_BRCA1_7.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 540 2.97 0.00 0 8 100 2 590.30481 1179.60234 1.59 30.97 1789 1789 MS2 14/18 Linfeng_20120514_rIgG_7.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 588 2.98 0.00 0 6 100 2 590.30463 1179.60198 1.28 30.25 1792 1792 MS2 16/18 Linfeng_20120515_BRCA1_1.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 525 2.98 0.00 0 40 100 2 651.86157 1302.71587 0.52 45.64 3689 3689 MS2 14/22 Linfeng_20120514_rIgG_10.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 500 2.99 0.00 0 43 100 2 633.32385 1265.64043 2.50 32.89 2243 2243 MS2 15/20 Linfeng_20120514_rIgG_3.raw High NMQDMVEDYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 57 2.99 0.00 0 21 100 2 650.77057 1300.53386 3.19 34.60 2105 2105 MS2 13/18 Linfeng_20120515_BRCA1_2.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 553 2.99 0.00 0 11 100 2 633.32361 1265.63994 2.12 31.80 1960 1960 MS2 15/20 Linfeng_20120514_rIgG_6.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 619 2.99 0.00 0 4 100 2 738.39636 1475.78545 0.09 26.97 1500 1500 MS2 15/22 Linfeng_20120514_rIgG_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 498 3.00 0.00 0 44 100 2 590.30475 1179.60222 1.48 27.53 1635 1635 MS2 13/18 Linfeng_20120514_rIgG_3.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 505 3.00 0.00 0 23 100 2 858.92981 1716.85234 0.68 34.13 2650 2650 MS2 13/28 Linfeng_20120515_BRCA1_8.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 656 3.00 0.00 0 6 100 2 738.39569 1475.78411 -0.82 26.99 1509 1509 MS2 17/22 Linfeng_20120514_rIgG_6.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 529 3.01 0.00 0 7 100 2 590.30518 1179.60307 2.21 30.97 1860 1860 MS2 13/18 Linfeng_20120514_rIgG_6.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 610 3.01 0.00 0 44 100 2 590.30377 1179.60027 -0.17 27.30 1626 1626 MS2 15/18 Linfeng_20120514_rIgG_2.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 431 3.01 0.00 0 26 100 2 692.34882 1383.69036 0.00 45.59 4163 4163 MS2 17/22 Linfeng_20120514_rIgG_8.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 483 3.01 0.00 0 44 100 2 692.34845 1383.68962 -0.53 45.90 3699 3699 MS2 15/22 Linfeng_20120515_BRCA1_9.raw High LALDLEIATYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 355 3.01 0.00 0 13 100 2 639.36017 1277.71306 2.37 49.22 4536 4536 MS2 18/20 Linfeng_20120514_rIgG_4.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 409 3.01 0.00 0 3 100 2 692.34900 1383.69072 0.26 46.09 3168 3168 MS2 17/22 Linfeng_20120515_BRCA1_2.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 482 3.02 0.00 0 8 100 2 692.34937 1383.69145 0.79 47.47 4114 4114 MS2 16/22 Linfeng_20120514_rIgG_10.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 514 3.02 0.00 0 19 100 2 651.86121 1302.71514 -0.04 49.68 4705 4705 MS2 17/22 Linfeng_20120514_rIgG_10.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 636 3.02 0.00 0 10 100 2 590.30566 1179.60405 3.04 31.17 2099 2099 MS2 15/18 Linfeng_20120515_BRCA1_8.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 625 3.02 0.00 0 34 100 2 738.39697 1475.78667 0.91 29.98 1850 1850 MS2 17/22 Linfeng_20120515_BRCA1_10.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 516 3.02 0.00 0 8 11 2 651.86157 1302.71587 0.52 49.04 4276 4276 MS2 14/22 Linfeng_20120515_BRCA1_6.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 602 3.03 0.00 0 15 100 2 590.30365 1179.60002 -0.38 27.46 1591 1591 MS2 13/18 Linfeng_20120514_rIgG_1.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 536 3.03 0.00 0 28 100 2 997.49829 1993.98931 6.32 55.87 5439 5439 MS2 17/30 Linfeng_20120514_rIgG_5.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 496 3.03 0.00 0 4 100 2 633.32300 1265.63872 1.15 31.25 1770 1770 MS2 15/20 Linfeng_20120515_BRCA1_6.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 486 3.03 0.00 0 7 79 2 692.34998 1383.69267 1.67 46.72 3893 3893 MS2 18/22 Linfeng_20120515_BRCA1_9.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 502 3.03 0.00 0 9 100 2 692.34766 1383.68804 -1.68 48.83 4539 4539 MS2 15/22 Linfeng_20120514_rIgG_3.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 489 3.03 0.00 0 9 76 2 651.86151 1302.71575 0.43 49.16 4738 4738 MS2 19/22 Linfeng_20120515_BRCA1_1.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 538 3.04 0.00 0 33 100 2 651.86133 1302.71538 0.14 50.07 5256 5256 MS2 17/22 Linfeng_20120514_rIgG_2.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 488 3.04 0.00 0 30 100 2 692.34821 1383.68913 -0.89 47.80 4280 4280 MS2 13/22 Linfeng_20120514_rIgG_5.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 497 3.04 0.00 0 4 100 2 651.86169 1302.71611 0.71 49.16 4643 4643 MS2 17/22 Linfeng_20120514_rIgG_3.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 519 3.04 0.00 0 0 100 2 651.86096 1302.71465 -0.42 49.63 5192 5192 MS2 17/22 Linfeng_20120514_rIgG_8.raw High LNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 596 3.04 0.00 0 16 100 2 679.35315 1357.69902 2.34 38.07 2867 2867 MS2 15/22 Linfeng_20120514_rIgG_5.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 559 3.04 0.00 0 7 100 2 590.30499 1179.60271 1.90 30.54 1776 1776 MS2 15/18 Linfeng_20120514_rIgG_5.raw High LDSELKNMQDMVEDYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 243 3.04 0.00 1 26 100 3 662.63696 1985.89634 0.97 47.62 4639 4639 MS2 24/60 Linfeng_20120514_rIgG_2.raw High KQISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 639 3.05 0.00 1 25 100 3 615.65521 1844.95108 2.67 31.19 2037 2037 MS2 24/60 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 601 3.05 0.00 0 14 100 2 590.30383 1179.60039 -0.07 29.93 1718 1718 MS2 14/18 Linfeng_20120515_BRCA1_7.raw High SLNNQFASFIDKVR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 482 3.05 0.00 1 0 100 2 819.93555 1638.86382 2.39 49.65 5181 5181 MS2 15/26 Linfeng_20120514_rIgG_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 509 3.05 0.00 0 4 100 2 590.30518 1179.60307 2.21 30.78 1812 1812 MS2 15/18 Linfeng_20120514_rIgG_4.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 518 3.05 0.00 0 10 100 2 858.93170 1716.85613 2.88 34.04 2485 2485 MS2 16/28 Linfeng_20120515_BRCA1_10.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 427 3.05 0.00 0 9 100 2 692.34894 1383.69060 0.17 45.86 3135 3135 MS2 14/22 Linfeng_20120515_BRCA1_2.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 566 3.05 0.00 0 38 100 2 651.86060 1302.71391 -0.98 50.00 5164 5164 MS2 16/22 Linfeng_20120514_rIgG_1.raw High NKLNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 601 3.05 0.00 1 20 100 2 800.41937 1599.83147 -1.43 44.60 3744 3744 MS2 16/26 Linfeng_20120514_rIgG_3.raw High NKLNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 559 3.06 0.00 1 7 100 2 800.42072 1599.83415 0.25 43.64 3130 3130 MS2 18/26 Linfeng_20120514_rIgG_7.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 543 3.06 0.00 0 9 100 2 590.30505 1179.60283 2.00 30.83 1933 1933 MS2 13/18 Linfeng_20120514_rIgG_8.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 653 3.06 0.00 0 6 100 2 738.39630 1475.78533 0.00 26.50 1543 1543 MS2 19/22 Linfeng_20120514_rIgG_2.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 496 3.06 0.00 0 3 100 2 858.93140 1716.85552 2.52 35.08 2503 2503 MS2 16/28 Linfeng_20120514_rIgG_10.raw High NMQDmVEDYR Unambiguous 1 1 IPI00220327.4 M5(Oxidation) CID 1.0000 0.0000 1 1 46 3.07 0.00 0 17 100 2 658.76630 1316.52532 0.52 34.16 2533 2533 MS2 14/18 Linfeng_20120514_rIgG_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 566 3.07 0.00 0 8 100 2 590.30432 1179.60137 0.76 29.11 1753 1753 MS2 14/18 Linfeng_20120514_rIgG_10.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 559 3.07 0.00 0 6 100 2 590.30530 1179.60332 2.41 30.50 1926 1926 MS2 16/18 Linfeng_20120515_BRCA1_5.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 631 3.07 0.00 0 5 100 2 590.30371 1179.60015 -0.28 28.85 1628 1628 MS2 16/18 Linfeng_20120514_rIgG_7.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 481 3.07 0.00 0 3 100 2 633.32300 1265.63872 1.15 31.03 1795 1795 MS2 16/20 Linfeng_20120514_rIgG_7.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 541 3.07 0.00 0 15 100 2 590.30499 1179.60271 1.90 30.90 1945 1945 MS2 14/18 Linfeng_20120514_rIgG_9.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 464 3.07 0.00 0 3 100 2 692.34839 1383.68950 -0.62 47.48 4202 4202 MS2 17/22 Linfeng_20120514_rIgG_5.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 492 3.08 0.00 0 18 100 2 692.34784 1383.68840 -1.42 47.65 4531 4531 MS2 15/22 Linfeng_20120514_rIgG_6.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 484 3.08 0.00 0 8 100 2 692.34973 1383.69219 1.32 46.81 3771 3771 MS2 15/22 Linfeng_20120515_BRCA1_3.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 506 3.08 0.00 0 4 100 2 633.32330 1265.63933 1.63 30.77 1810 1810 MS2 17/20 Linfeng_20120514_rIgG_4.raw High NMQDMVEDYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 56 3.08 0.00 0 29 100 2 650.76935 1300.53142 1.31 33.43 2074 2074 MS2 13/18 Linfeng_20120515_BRCA1_7.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 418 3.08 0.00 0 21 100 2 692.34894 1383.69060 0.17 47.60 4082 4082 MS2 17/22 Linfeng_20120515_BRCA1_4.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 494 3.08 0.00 0 7 100 2 633.32318 1265.63909 1.44 30.78 1839 1839 MS2 17/20 Linfeng_20120514_rIgG_6.raw High NKLNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 572 3.08 0.00 1 10 100 2 800.42053 1599.83379 0.02 43.79 3360 3360 MS2 15/26 Linfeng_20120514_rIgG_10.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 601 3.08 0.00 0 8 100 2 738.39813 1475.78899 2.48 30.80 1992 1992 MS2 18/22 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 535 3.09 0.00 0 14 100 2 590.30511 1179.60295 2.10 30.78 1924 1924 MS2 15/18 Linfeng_20120514_rIgG_8.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 614 3.09 0.00 0 3 2 3 665.33014 1993.97586 -0.42 49.02 4600 4600 MS2 23/60 Linfeng_20120514_rIgG_3.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 495 3.09 0.00 0 29 100 2 651.86188 1302.71648 0.99 49.91 4487 4487 MS2 18/22 Linfeng_20120515_BRCA1_6.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 561 3.09 0.00 0 4 100 2 590.30493 1179.60259 1.79 30.39 1776 1776 MS2 15/18 Linfeng_20120514_rIgG_4.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 490 3.09 0.00 0 29 100 2 692.34930 1383.69133 0.70 47.96 4719 4719 MS2 15/22 Linfeng_20120514_rIgG_2.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 536 3.09 0.00 0 20 100 2 651.86163 1302.71599 0.61 45.73 4188 4188 MS2 17/22 Linfeng_20120515_BRCA1_10.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 555 3.10 0.00 0 5 100 2 590.30505 1179.60283 2.00 31.18 1844 1844 MS2 15/18 Linfeng_20120514_rIgG_4.raw High NKLNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 603 3.10 0.00 1 0 100 3 533.94946 1599.83384 0.05 44.11 3720 3720 MS2 23/52 Linfeng_20120514_rIgG_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 544 3.10 0.00 0 4 100 2 590.30475 1179.60222 1.48 31.19 1819 1819 MS2 15/18 Linfeng_20120515_BRCA1_7.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 536 3.10 0.00 0 23 100 2 651.86053 1302.71379 -1.07 49.81 4670 4670 MS2 18/22 Linfeng_20120515_BRCA1_4.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 436 3.10 0.00 0 26 100 2 692.34882 1383.69036 0.00 47.85 4705 4705 MS2 14/22 Linfeng_20120514_rIgG_8.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 505 3.10 0.00 0 2 100 2 633.32349 1265.63970 1.92 31.42 2026 2026 MS2 16/20 Linfeng_20120514_rIgG_1.raw High NMQDMVEDYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 54 3.10 0.00 0 44 100 2 650.76782 1300.52837 -1.03 33.72 2267 2267 MS2 16/18 Linfeng_20120514_rIgG_6.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 494 3.11 0.00 0 24 100 2 633.32306 1265.63884 1.25 30.74 1952 1952 MS2 17/20 Linfeng_20120515_BRCA1_5.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 478 3.11 0.00 0 16 100 2 692.35010 1383.69292 1.85 45.73 3899 3899 MS2 14/22 Linfeng_20120514_rIgG_9.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 479 3.11 0.00 0 16 100 2 692.34924 1383.69121 0.61 47.55 3438 3438 MS2 14/22 Linfeng_20120515_BRCA1_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 594 3.12 0.00 0 3 100 2 590.30402 1179.60076 0.24 28.99 1672 1672 MS2 15/18 Linfeng_20120515_BRCA1_1.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 659 3.12 0.00 0 4 100 2 738.39667 1475.78606 0.50 27.04 1552 1552 MS2 17/22 Linfeng_20120514_rIgG_10.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 628 3.12 0.00 0 2 100 2 590.30408 1179.60088 0.34 28.43 1625 1625 MS2 15/18 Linfeng_20120515_BRCA1_1.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 505 3.12 0.00 0 7 100 2 633.32404 1265.64079 2.79 31.05 2081 2081 MS2 16/20 Linfeng_20120515_BRCA1_8.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 564 3.13 0.00 0 5 100 2 590.30475 1179.60222 1.48 30.57 1819 1819 MS2 16/18 Linfeng_20120515_BRCA1_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 616 3.13 0.00 0 14 100 2 590.30432 1179.60137 0.76 28.97 1667 1667 MS2 15/18 Linfeng_20120514_rIgG_6.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 468 3.13 0.00 0 27 100 2 692.34949 1383.69170 0.97 45.45 4405 4405 MS2 18/22 Linfeng_20120515_BRCA1_8.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 541 3.13 0.00 0 65 100 2 651.85992 1302.71257 -2.01 55.35 5165 5165 MS2 17/22 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 545 3.13 0.00 0 6 100 2 590.30505 1179.60283 2.00 30.84 1844 1844 MS2 14/18 Linfeng_20120514_rIgG_6.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 564 3.13 0.00 0 8 100 2 590.30450 1179.60173 1.07 30.93 1744 1744 MS2 14/18 Linfeng_20120515_BRCA1_6.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 494 3.13 0.00 0 6 100 2 692.34796 1383.68865 -1.24 47.39 4180 4180 MS2 16/22 Linfeng_20120514_rIgG_5.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 425 3.14 0.00 0 24 89 2 692.34918 1383.69109 0.52 45.68 4176 4176 MS2 18/22 Linfeng_20120515_BRCA1_10.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 530 3.14 0.00 0 3 100 2 590.30487 1179.60246 1.69 30.48 1807 1807 MS2 16/18 Linfeng_20120514_rIgG_6.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 589 3.14 0.00 0 9 100 2 590.30420 1179.60112 0.55 29.56 1707 1707 MS2 16/18 Linfeng_20120514_rIgG_4.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 500 3.14 0.00 0 3 52 2 633.32391 1265.64055 2.60 30.54 1965 1965 MS2 16/20 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 632 3.14 0.00 0 13 100 2 590.30408 1179.60088 0.34 29.86 1684 1684 MS2 14/18 Linfeng_20120515_BRCA1_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 536 3.14 0.00 0 2 100 2 590.30493 1179.60259 1.79 31.01 1829 1829 MS2 14/18 Linfeng_20120514_rIgG_4.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 613 3.14 0.00 0 7 100 2 738.39606 1475.78484 -0.33 33.62 2440 2440 MS2 14/22 Linfeng_20120514_rIgG_2.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 570 3.14 0.00 0 11 100 3 572.95691 1716.85617 2.91 34.69 2247 2247 MS2 28/56 Linfeng_20120514_rIgG_4.raw High NMQDMVEDYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 54 3.15 0.00 0 11 100 2 650.77008 1300.53288 2.44 34.32 2412 2412 MS2 14/18 Linfeng_20120514_rIgG_1.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 550 3.15 0.00 0 12 100 2 633.32440 1265.64153 3.37 31.89 2111 2111 MS2 14/20 Linfeng_20120515_BRCA1_10.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 611 3.15 0.00 0 26 34 3 665.33136 1993.97953 1.41 49.15 5059 5059 MS2 27/60 Linfeng_20120514_rIgG_2.raw High LNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 554 3.16 0.00 0 13 100 2 679.35199 1357.69670 0.63 37.93 2791 2791 MS2 17/22 Linfeng_20120515_BRCA1_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 552 3.16 0.00 0 5 100 2 590.30420 1179.60112 0.55 29.37 1705 1705 MS2 15/18 Linfeng_20120515_BRCA1_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 525 3.16 0.00 0 1 100 2 590.30414 1179.60100 0.45 28.83 1660 1660 MS2 15/18 Linfeng_20120515_BRCA1_1.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 507 3.16 0.00 0 0 100 2 651.86139 1302.71550 0.24 50.17 4724 4724 MS2 18/22 Linfeng_20120514_rIgG_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 550 3.16 0.00 0 7 100 2 590.30463 1179.60198 1.28 31.17 1762 1762 MS2 15/18 Linfeng_20120515_BRCA1_6.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 589 3.16 0.00 0 2 100 2 738.39740 1475.78752 1.49 26.98 1562 1562 MS2 15/22 Linfeng_20120514_rIgG_8.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 536 3.16 0.00 0 7 100 2 633.32330 1265.63933 1.63 30.80 1928 1928 MS2 15/20 Linfeng_20120514_rIgG_8.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 600 3.17 0.00 0 30 100 2 738.39771 1475.78813 1.91 32.57 2279 2279 MS2 14/22 Linfeng_20120514_rIgG_2.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 469 3.17 0.00 0 2 28 2 692.34924 1383.69121 0.61 45.82 4082 4082 MS2 18/22 Linfeng_20120514_rIgG_6.raw High WELLQQVDTSTR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 538 3.18 0.00 0 22 100 2 738.37988 1475.75249 2.40 46.32 4336 4336 MS2 16/22 Linfeng_20120514_rIgG_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 622 3.18 0.00 0 4 100 2 590.30402 1179.60076 0.24 29.09 1680 1680 MS2 14/18 Linfeng_20120515_BRCA1_1.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 608 3.18 0.00 0 2 100 3 572.95715 1716.85691 3.33 34.46 2221 2221 MS2 26/56 Linfeng_20120514_rIgG_4.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 517 3.18 0.00 0 21 93 2 651.86188 1302.71648 0.99 49.20 5088 5088 MS2 17/22 Linfeng_20120515_BRCA1_10.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 530 3.18 0.00 0 8 100 2 590.30444 1179.60161 0.97 29.63 1726 1726 MS2 13/18 Linfeng_20120515_BRCA1_1.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 502 3.18 0.00 0 15 100 2 633.32349 1265.63970 1.92 30.66 1790 1790 MS2 14/20 Linfeng_20120514_rIgG_5.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 445 3.18 0.00 0 2 39 2 692.34851 1383.68974 -0.45 46.95 4483 4483 MS2 18/22 Linfeng_20120515_BRCA1_10.raw High TNAENEFVTIKK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 595 3.18 0.00 1 1 100 2 697.36932 1393.73137 -0.62 23.78 1358 1358 MS2 14/22 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 539 3.19 0.00 0 6 100 2 590.30450 1179.60173 1.07 30.87 1740 1740 MS2 14/18 Linfeng_20120515_BRCA1_6.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 550 3.19 0.00 0 5 100 2 590.30450 1179.60173 1.07 30.94 1795 1795 MS2 14/18 Linfeng_20120515_BRCA1_7.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 489 3.19 0.00 0 5 100 2 633.32391 1265.64055 2.60 31.12 1787 1787 MS2 17/20 Linfeng_20120515_BRCA1_4.raw High LALDLEIATYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 374 3.19 0.00 0 11 65 2 639.35742 1277.70757 -1.93 55.33 5720 5720 MS2 18/20 Linfeng_20120514_rIgG_1.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 415 3.19 0.00 0 5 46 2 692.34912 1383.69097 0.44 46.45 4369 4369 MS2 17/22 Linfeng_20120514_rIgG_8.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 539 3.19 0.00 0 9 100 2 997.49164 1993.97600 -0.36 49.70 5115 5115 MS2 16/30 Linfeng_20120514_rIgG_1.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 648 3.19 0.00 0 2 100 2 738.39581 1475.78435 -0.66 27.04 1496 1496 MS2 17/22 Linfeng_20120514_rIgG_5.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 431 3.20 0.00 0 10 100 2 829.40253 1657.79778 2.92 33.01 2187 2187 MS2 16/32 Linfeng_20120514_rIgG_10.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 498 3.20 0.00 0 4 100 2 858.93011 1716.85295 1.03 33.81 2473 2473 MS2 15/28 Linfeng_20120514_rIgG_2.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 602 3.20 0.00 0 30 100 2 651.86267 1302.71807 2.21 45.57 4071 4071 MS2 18/22 Linfeng_20120514_rIgG_1.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 621 3.20 0.00 0 24 100 3 665.33252 1993.98301 3.16 56.77 6135 6135 MS2 24/60 Linfeng_20120514_rIgG_2.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 664 3.21 0.00 0 4 100 2 738.39587 1475.78447 -0.58 27.31 1506 1506 MS2 19/22 Linfeng_20120515_BRCA1_4.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 430 3.21 0.00 0 23 100 2 692.34906 1383.69084 0.35 47.62 3891 3891 MS2 16/22 Linfeng_20120514_rIgG_7.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 571 3.21 0.00 0 3 100 2 590.30371 1179.60015 -0.28 27.80 1562 1562 MS2 15/18 Linfeng_20120515_BRCA1_1.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 530 3.21 0.00 0 0 100 2 997.49335 1993.97942 1.36 55.48 5628 5628 MS2 15/30 Linfeng_20120515_BRCA1_1.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 461 3.21 0.00 0 3 69 2 692.34808 1383.68889 -1.06 46.55 4258 4258 MS2 19/22 Linfeng_20120514_rIgG_6.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 439 3.21 0.00 0 2 67 2 692.34692 1383.68657 -2.74 46.27 4722 4722 MS2 17/22 Linfeng_20120515_BRCA1_5.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 575 3.21 0.00 0 8 100 2 590.30420 1179.60112 0.55 29.04 1745 1745 MS2 15/18 Linfeng_20120514_rIgG_10.raw High NMQDMVEDYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 59 3.21 0.00 0 12 100 2 650.76971 1300.53215 1.88 34.43 2296 2296 MS2 14/18 Linfeng_20120515_BRCA1_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 624 3.22 0.00 0 5 100 2 590.30389 1179.60051 0.03 28.70 1710 1710 MS2 16/18 Linfeng_20120514_rIgG_10.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 419 3.22 0.00 0 6 30 2 692.34888 1383.69048 0.08 47.91 5009 5009 MS2 16/22 Linfeng_20120515_BRCA1_8.raw High WELLQQVDTSTR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 538 3.22 0.00 0 26 24 2 738.37726 1475.74724 -1.15 45.42 3887 3887 MS2 17/22 Linfeng_20120514_rIgG_3.raw High LALDLEIATYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 405 3.22 0.00 0 20 100 2 639.35938 1277.71147 1.13 55.35 5764 5764 MS2 18/20 Linfeng_20120514_rIgG_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 557 3.22 0.00 0 16 100 2 590.30518 1179.60307 2.21 30.86 1940 1940 MS2 14/18 Linfeng_20120514_rIgG_9.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 533 3.23 0.00 0 37 100 2 651.86115 1302.71501 -0.14 50.03 5148 5148 MS2 17/22 Linfeng_20120514_rIgG_6.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 520 3.23 0.00 0 3 100 2 590.30511 1179.60295 2.10 30.54 1813 1813 MS2 15/18 Linfeng_20120514_rIgG_6.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 644 3.23 0.00 0 3 100 2 590.30408 1179.60088 0.34 29.13 1628 1628 MS2 14/18 Linfeng_20120515_BRCA1_4.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 424 3.23 0.00 0 0 100 2 829.39954 1657.79180 -0.69 33.11 2070 2070 MS2 17/32 Linfeng_20120514_rIgG_5.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 590 3.23 0.00 0 16 100 2 590.30475 1179.60222 1.48 30.44 1893 1893 MS2 15/18 Linfeng_20120514_rIgG_9.raw High NMQDMVEDYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 57 3.23 0.00 0 4 100 2 650.77094 1300.53459 3.75 34.38 2211 2211 MS2 15/18 Linfeng_20120514_rIgG_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 532 3.23 0.00 0 5 100 2 590.30524 1179.60320 2.31 30.91 2005 2005 MS2 16/18 Linfeng_20120514_rIgG_3.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 628 3.24 0.00 0 5 100 2 738.39667 1475.78606 0.50 28.88 1792 1792 MS2 15/22 Linfeng_20120515_BRCA1_8.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 483 3.24 0.00 0 8 77 2 692.35004 1383.69280 1.76 47.50 4608 4608 MS2 16/22 Linfeng_20120514_rIgG_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 579 3.24 0.00 0 11 100 2 590.30487 1179.60246 1.69 30.59 1906 1906 MS2 15/18 Linfeng_20120514_rIgG_9.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 472 3.24 0.00 0 12 100 2 692.34943 1383.69158 0.88 47.34 4490 4490 MS2 18/22 Linfeng_20120514_rIgG_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 549 3.24 0.00 0 11 100 2 590.30371 1179.60015 -0.28 29.27 1659 1659 MS2 14/18 Linfeng_20120514_rIgG_7.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 470 3.25 0.00 0 4 100 2 692.34930 1383.69133 0.70 46.29 3193 3193 MS2 18/22 Linfeng_20120515_BRCA1_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 589 3.25 0.00 0 4 100 2 590.30383 1179.60039 -0.07 29.00 1743 1743 MS2 14/18 Linfeng_20120515_BRCA1_10.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 410 3.25 0.00 0 5 66 2 692.34888 1383.69048 0.08 46.64 4415 4415 MS2 19/22 Linfeng_20120514_rIgG_8.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 563 3.25 0.00 0 28 100 2 590.30585 1179.60442 3.35 31.04 1991 1991 MS2 16/18 Linfeng_20120515_BRCA1_10.raw High LNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 546 3.26 0.00 0 6 100 2 679.35211 1357.69695 0.81 39.05 3492 3492 MS2 18/22 Linfeng_20120515_BRCA1_5.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 491 3.26 0.00 0 16 100 2 633.32318 1265.63909 1.44 30.69 1795 1795 MS2 15/20 Linfeng_20120514_rIgG_5.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 538 3.26 0.00 0 5 100 2 590.30524 1179.60320 2.31 29.96 1904 1904 MS2 15/18 Linfeng_20120514_rIgG_3.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 608 3.26 0.00 0 3 100 2 738.39844 1475.78960 2.90 27.20 1579 1579 MS2 16/22 Linfeng_20120514_rIgG_9.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 597 3.26 0.00 0 34 100 3 665.33069 1993.97751 0.40 56.83 6109 6109 MS2 20/60 Linfeng_20120514_rIgG_1.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 629 3.26 0.00 0 0 100 2 738.39587 1475.78447 -0.58 27.12 1505 1505 MS2 14/22 Linfeng_20120514_rIgG_7.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 473 3.27 0.00 0 0 100 2 692.34760 1383.68791 -1.77 46.68 4292 4292 MS2 18/22 Linfeng_20120514_rIgG_6.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 552 3.27 0.00 0 8 100 2 858.93219 1716.85710 3.45 35.42 2425 2425 MS2 14/28 Linfeng_20120515_BRCA1_9.raw High NKLNDLEDALQQAKEDLAR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 556 3.27 0.00 2 37 18 3 728.71295 2184.12430 -0.60 48.89 4556 4556 MS2 21/72 Linfeng_20120514_rIgG_3.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 637 3.27 0.00 0 0 100 2 738.39630 1475.78533 0.00 29.48 1646 1646 MS2 16/22 Linfeng_20120515_BRCA1_6.raw High NKLNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 550 3.28 0.00 1 4 100 2 800.42230 1599.83733 2.24 43.15 3517 3517 MS2 17/26 Linfeng_20120514_rIgG_1.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 509 3.28 0.00 0 4 100 2 633.32349 1265.63970 1.92 31.79 1947 1947 MS2 15/20 Linfeng_20120515_BRCA1_1.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 545 3.28 0.00 0 0 100 2 997.49390 1993.98052 1.91 49.42 5128 5128 MS2 16/30 Linfeng_20120514_rIgG_2.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 435 3.28 0.00 0 3 100 2 692.34717 1383.68706 -2.39 46.82 4744 4744 MS2 19/22 Linfeng_20120515_BRCA1_8.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 472 3.29 0.00 0 4 33 2 692.34967 1383.69206 1.23 46.61 4067 4067 MS2 18/22 Linfeng_20120514_rIgG_3.raw High THNLEPYFESFINNLRR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 660 3.29 0.00 1 31 100 4 538.27606 2150.08242 2.13 56.32 6027 6027 MS2 28/96 Linfeng_20120514_rIgG_2.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 519 3.29 0.00 0 19 100 2 651.85986 1302.71245 -2.10 49.99 4703 4703 MS2 17/22 Linfeng_20120514_rIgG_4.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 522 3.29 0.00 0 33 100 2 651.86176 1302.71623 0.80 55.38 5173 5173 MS2 18/22 Linfeng_20120514_rIgG_3.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 429 3.29 0.00 0 3 18 2 692.35059 1383.69390 2.55 46.45 4365 4365 MS2 18/22 Linfeng_20120514_rIgG_2.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 465 3.29 0.00 0 5 97 2 692.34924 1383.69121 0.61 47.36 4242 4242 MS2 17/22 Linfeng_20120515_BRCA1_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 564 3.29 0.00 0 7 100 2 590.30511 1179.60295 2.10 30.92 1947 1947 MS2 16/18 Linfeng_20120514_rIgG_8.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 449 3.29 0.00 0 18 100 2 692.35059 1383.69390 2.55 45.38 4027 4027 MS2 17/22 Linfeng_20120514_rIgG_1.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 441 3.29 0.00 0 2 100 2 692.34741 1383.68755 -2.03 47.07 4102 4102 MS2 17/22 Linfeng_20120514_rIgG_5.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 550 3.30 0.00 0 1 100 2 590.30530 1179.60332 2.41 31.23 1850 1850 MS2 16/18 Linfeng_20120514_rIgG_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 556 3.30 0.00 0 3 100 2 590.30579 1179.60430 3.24 31.01 2015 2015 MS2 14/18 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 611 3.30 0.00 0 7 100 2 590.30432 1179.60137 0.76 29.57 1721 1721 MS2 17/18 Linfeng_20120515_BRCA1_1.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 505 3.30 0.00 0 28 100 2 633.32306 1265.63884 1.25 30.64 1943 1943 MS2 16/20 Linfeng_20120515_BRCA1_5.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 515 3.30 0.00 0 33 100 2 651.86182 1302.71636 0.89 49.18 4525 4525 MS2 19/22 Linfeng_20120514_rIgG_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 560 3.30 0.00 0 5 100 2 590.30554 1179.60381 2.83 30.96 1986 1986 MS2 16/18 Linfeng_20120515_BRCA1_5.raw High NKLNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 616 3.30 0.00 1 2 100 3 533.94843 1599.83072 -1.89 44.39 3704 3704 MS2 24/52 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 527 3.30 0.00 0 1 100 2 590.30542 1179.60356 2.62 30.71 1982 1982 MS2 15/18 Linfeng_20120514_rIgG_3.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 485 3.30 0.00 0 4 30 2 692.34998 1383.69267 1.67 47.13 3978 3978 MS2 18/22 Linfeng_20120514_rIgG_4.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 489 3.30 0.00 0 8 100 2 651.86188 1302.71648 0.99 45.80 3569 3569 MS2 16/22 Linfeng_20120515_BRCA1_7.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 424 3.31 0.00 0 19 100 2 692.34912 1383.69097 0.44 47.66 4011 4011 MS2 17/22 Linfeng_20120515_BRCA1_7.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 536 3.32 0.00 0 10 100 2 651.86133 1302.71538 0.14 45.80 3941 3941 MS2 16/22 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 563 3.32 0.00 0 10 100 2 590.30475 1179.60222 1.48 30.55 1901 1901 MS2 15/18 Linfeng_20120514_rIgG_9.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 597 3.32 0.00 0 33 100 3 665.33075 1993.97770 0.49 56.37 5997 5997 MS2 26/60 Linfeng_20120514_rIgG_1.raw High WELLQQVDTSTR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 525 3.32 0.00 0 21 65 2 738.37775 1475.74822 -0.49 46.00 3968 3968 MS2 16/22 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 576 3.32 0.00 0 24 100 2 590.30548 1179.60369 2.72 31.05 1965 1965 MS2 15/18 Linfeng_20120514_rIgG_8.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 470 3.32 0.00 0 5 19 2 692.34937 1383.69145 0.79 46.20 3662 3662 MS2 17/22 Linfeng_20120515_BRCA1_7.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 489 3.33 0.00 0 15 100 2 633.32294 1265.63860 1.06 30.37 1753 1753 MS2 16/20 Linfeng_20120514_rIgG_5.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 482 3.33 0.00 0 3 45 2 692.34979 1383.69231 1.41 45.77 4197 4197 MS2 18/22 Linfeng_20120515_BRCA1_10.raw High LNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 587 3.33 0.00 0 4 100 2 679.35242 1357.69756 1.26 38.79 3448 3448 MS2 18/22 Linfeng_20120515_BRCA1_8.raw High LALDLEIATYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 401 3.33 0.00 0 1 3 2 639.35773 1277.70818 -1.45 48.94 5415 5415 MS2 16/20 Linfeng_20120515_BRCA1_5.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 577 3.33 0.00 0 4 100 2 590.30463 1179.60198 1.28 30.36 1899 1899 MS2 16/18 Linfeng_20120514_rIgG_1.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 522 3.34 0.00 0 3 100 2 858.93073 1716.85417 1.74 34.14 2283 2283 MS2 18/28 Linfeng_20120514_rIgG_5.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 552 3.34 0.00 0 3 100 2 590.30530 1179.60332 2.41 31.09 2024 2024 MS2 16/18 Linfeng_20120514_rIgG_3.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 485 3.34 0.00 0 4 100 2 692.34979 1383.69231 1.41 46.52 3234 3234 MS2 17/22 Linfeng_20120515_BRCA1_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 590 3.34 0.00 0 6 100 2 590.30481 1179.60234 1.59 31.01 1793 1793 MS2 16/18 Linfeng_20120514_rIgG_7.raw High NMQDMVEDYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 54 3.34 0.00 0 8 100 2 650.76941 1300.53154 1.41 34.95 2661 2661 MS2 15/18 Linfeng_20120514_rIgG_2.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 506 3.34 0.00 0 3 100 2 633.32336 1265.63945 1.73 30.85 1913 1913 MS2 15/20 Linfeng_20120514_rIgG_10.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 439 3.35 0.00 0 6 100 2 829.40247 1657.79766 2.84 33.13 2007 2007 MS2 19/32 Linfeng_20120514_rIgG_7.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 567 3.35 0.00 0 6 100 2 590.30420 1179.60112 0.55 28.72 1642 1642 MS2 14/18 Linfeng_20120514_rIgG_6.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 526 3.35 0.00 0 24 100 2 633.32324 1265.63921 1.54 30.84 1969 1969 MS2 16/20 Linfeng_20120515_BRCA1_5.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 637 3.36 0.00 0 2 100 2 590.30408 1179.60088 0.34 28.73 1652 1652 MS2 14/18 Linfeng_20120515_BRCA1_1.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 523 3.36 0.00 0 4 55 2 633.32324 1265.63921 1.54 30.41 1906 1906 MS2 17/20 Linfeng_20120514_rIgG_1.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 657 3.36 0.00 0 4 100 2 738.39655 1475.78581 0.33 29.34 1645 1645 MS2 18/22 Linfeng_20120515_BRCA1_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 535 3.36 0.00 0 5 100 2 590.30499 1179.60271 1.90 30.31 1898 1898 MS2 16/18 Linfeng_20120515_BRCA1_10.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 550 3.36 0.00 0 4 100 2 590.30499 1179.60271 1.90 30.22 1930 1930 MS2 15/18 Linfeng_20120514_rIgG_3.raw High WELLQQVDTSTR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 551 3.36 0.00 0 26 18 2 738.37866 1475.75005 0.75 45.17 4113 4113 MS2 17/22 Linfeng_20120514_rIgG_2.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 614 3.37 0.00 0 16 100 3 665.33209 1993.98172 2.51 49.20 4529 4529 MS2 23/60 Linfeng_20120514_rIgG_4.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 480 3.37 0.00 0 5 26 2 692.34979 1383.69231 1.41 46.61 3761 3761 MS2 19/22 Linfeng_20120515_BRCA1_7.raw High LNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 574 3.37 0.00 0 6 100 2 679.35144 1357.69560 -0.18 38.59 2844 2844 MS2 18/22 Linfeng_20120515_BRCA1_9.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 566 3.37 0.00 0 2 92 2 590.30420 1179.60112 0.55 28.37 1596 1596 MS2 15/18 Linfeng_20120515_BRCA1_7.raw High WELLQQVDTSTR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 572 3.37 0.00 0 18 100 2 738.38031 1475.75334 2.98 46.18 4309 4309 MS2 17/22 Linfeng_20120514_rIgG_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 533 3.38 0.00 0 3 100 2 590.30487 1179.60246 1.69 30.88 1857 1857 MS2 16/18 Linfeng_20120515_BRCA1_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 549 3.38 0.00 0 5 100 2 590.30536 1179.60344 2.52 30.94 1965 1965 MS2 16/18 Linfeng_20120514_rIgG_1.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 411 3.38 0.00 0 5 100 2 692.34882 1383.69036 0.00 46.41 3213 3213 MS2 17/22 Linfeng_20120515_BRCA1_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 555 3.38 0.00 0 4 100 2 590.30505 1179.60283 2.00 30.26 1935 1935 MS2 15/18 Linfeng_20120514_rIgG_3.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 436 3.38 0.00 0 0 100 2 829.40277 1657.79827 3.21 33.10 2022 2022 MS2 19/32 Linfeng_20120515_BRCA1_7.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 470 3.38 0.00 0 3 24 2 692.34839 1383.68950 -0.62 45.80 4490 4490 MS2 18/22 Linfeng_20120515_BRCA1_8.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 537 3.38 0.00 0 2 100 2 633.32324 1265.63921 1.54 31.35 2108 2108 MS2 17/20 Linfeng_20120514_rIgG_2.raw High SLNNQFASFIDKVR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 479 3.39 0.00 1 0 100 2 819.93494 1638.86260 1.64 49.71 5196 5196 MS2 15/26 Linfeng_20120514_rIgG_2.raw High LNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 601 3.39 0.00 0 13 100 2 679.35254 1357.69780 1.44 39.07 2991 2991 MS2 18/22 Linfeng_20120514_rIgG_5.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 524 3.39 0.00 0 8 100 2 590.30518 1179.60307 2.21 29.76 1885 1885 MS2 16/18 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 560 3.39 0.00 0 9 100 2 590.30548 1179.60369 2.72 30.90 1821 1821 MS2 15/18 Linfeng_20120514_rIgG_4.raw High LNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 545 3.39 0.00 0 4 100 2 679.35181 1357.69634 0.36 39.13 2716 2716 MS2 18/22 Linfeng_20120514_rIgG_7.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 416 3.39 0.00 0 4 100 2 692.34875 1383.69023 -0.09 46.73 4435 4435 MS2 18/22 Linfeng_20120514_rIgG_8.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 565 3.39 0.00 0 7 100 2 590.30444 1179.60161 0.97 28.95 1735 1735 MS2 15/18 Linfeng_20120514_rIgG_10.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 476 3.39 0.00 0 6 100 2 692.34753 1383.68779 -1.86 46.99 4081 4081 MS2 17/22 Linfeng_20120514_rIgG_5.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 476 3.39 0.00 0 2 57 2 692.34961 1383.69194 1.14 46.39 3938 3938 MS2 18/22 Linfeng_20120514_rIgG_5.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 439 3.40 0.00 0 3 43 2 692.34857 1383.68987 -0.36 46.52 3641 3641 MS2 17/22 Linfeng_20120515_BRCA1_6.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 546 3.40 0.00 0 4 100 2 590.30554 1179.60381 2.83 30.86 1999 1999 MS2 16/18 Linfeng_20120514_rIgG_3.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 465 3.40 0.00 0 3 100 2 692.34839 1383.68950 -0.62 46.99 3744 3744 MS2 18/22 Linfeng_20120514_rIgG_7.raw High NKLNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 555 3.40 0.00 1 11 100 2 800.41895 1599.83061 -1.96 44.40 3705 3705 MS2 17/26 Linfeng_20120514_rIgG_3.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 411 3.41 0.00 0 3 42 2 692.34906 1383.69084 0.35 46.45 3874 3874 MS2 17/22 Linfeng_20120514_rIgG_10.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 663 3.42 0.00 0 7 100 2 738.39655 1475.78581 0.33 29.22 1677 1677 MS2 17/22 Linfeng_20120515_BRCA1_9.raw High NMQDMVEDYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 54 3.42 0.00 0 2 100 2 650.76996 1300.53264 2.25 34.37 2546 2546 MS2 15/18 Linfeng_20120515_BRCA1_10.raw High NKLNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 578 3.42 0.00 1 13 100 2 800.42120 1599.83513 0.86 43.44 3156 3156 MS2 18/26 Linfeng_20120514_rIgG_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 540 3.42 0.00 0 5 100 2 590.30499 1179.60271 1.90 31.00 1971 1971 MS2 16/18 Linfeng_20120514_rIgG_1.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 665 3.42 0.00 0 2 100 2 738.39655 1475.78581 0.33 28.13 1603 1603 MS2 17/22 Linfeng_20120515_BRCA1_9.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 420 3.42 0.00 0 7 100 2 692.34882 1383.69036 0.00 47.66 4279 4279 MS2 18/22 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 588 3.42 0.00 0 1 100 2 590.30408 1179.60088 0.34 28.59 1640 1640 MS2 15/18 Linfeng_20120515_BRCA1_1.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 412 3.42 0.00 0 25 100 2 829.40179 1657.79631 2.03 32.79 2231 2231 MS2 18/32 Linfeng_20120514_rIgG_3.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 424 3.43 0.00 0 3 100 2 829.40240 1657.79753 2.77 32.94 2015 2015 MS2 21/32 Linfeng_20120514_rIgG_4.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 624 3.43 0.00 0 0 100 2 738.39673 1475.78618 0.58 27.07 1556 1556 MS2 18/22 Linfeng_20120514_rIgG_10.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 438 3.43 0.00 0 3 58 2 692.34863 1383.68999 -0.27 46.90 4135 4135 MS2 17/22 Linfeng_20120515_BRCA1_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 560 3.43 0.00 0 1 100 2 590.30499 1179.60271 1.90 29.88 1840 1840 MS2 16/18 Linfeng_20120514_rIgG_1.raw High NKLNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 535 3.44 0.00 1 16 100 2 800.42078 1599.83428 0.33 44.07 3711 3711 MS2 17/26 Linfeng_20120514_rIgG_1.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 411 3.44 0.00 0 0 100 2 829.39935 1657.79143 -0.91 33.27 2444 2444 MS2 20/32 Linfeng_20120515_BRCA1_8.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 434 3.44 0.00 0 2 100 2 829.40149 1657.79570 1.67 33.04 2198 2198 MS2 18/32 Linfeng_20120514_rIgG_8.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 551 3.44 0.00 0 3 100 2 858.93079 1716.85430 1.81 35.05 2518 2518 MS2 17/28 Linfeng_20120514_rIgG_6.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 586 3.44 0.00 0 7 100 2 590.30450 1179.60173 1.07 28.98 1739 1739 MS2 16/18 Linfeng_20120514_rIgG_10.raw High LNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 568 3.44 0.00 0 8 100 2 679.35175 1357.69621 0.27 39.17 2784 2784 MS2 18/22 Linfeng_20120515_BRCA1_4.raw High LNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 561 3.44 0.00 0 0 100 2 679.35144 1357.69560 -0.18 39.13 2507 2507 MS2 18/22 Linfeng_20120515_BRCA1_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 561 3.45 0.00 0 6 100 2 590.30554 1179.60381 2.83 31.07 1834 1834 MS2 14/18 Linfeng_20120514_rIgG_4.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 484 3.45 0.00 0 2 97 2 633.32379 1265.64031 2.41 31.56 2079 2079 MS2 17/20 Linfeng_20120514_rIgG_3.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 613 3.45 0.00 0 7 100 3 572.95709 1716.85672 3.23 34.76 2608 2608 MS2 26/56 Linfeng_20120515_BRCA1_10.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 564 3.45 0.00 0 1 100 2 590.30505 1179.60283 2.00 30.06 1861 1861 MS2 15/18 Linfeng_20120514_rIgG_1.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 501 3.46 0.00 0 2 100 2 858.93158 1716.85588 2.74 35.09 2600 2600 MS2 16/28 Linfeng_20120514_rIgG_8.raw High LALDLEIATYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 389 3.46 0.00 0 3 4 2 639.35828 1277.70928 -0.59 48.95 4577 4577 MS2 18/20 Linfeng_20120514_rIgG_5.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 627 3.46 0.00 0 5 100 2 590.30414 1179.60100 0.45 29.61 1904 1904 MS2 17/18 Linfeng_20120514_rIgG_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 621 3.46 0.00 0 3 100 2 590.30414 1179.60100 0.45 28.86 1810 1810 MS2 16/18 Linfeng_20120514_rIgG_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 542 3.46 0.00 0 7 100 2 590.30499 1179.60271 1.90 30.56 1935 1935 MS2 17/18 Linfeng_20120515_BRCA1_5.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 614 3.46 0.00 0 3 100 2 738.39716 1475.78703 1.16 34.64 2609 2609 MS2 17/22 Linfeng_20120514_rIgG_2.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 582 3.46 0.00 0 6 100 3 572.95642 1716.85471 2.06 34.57 2222 2222 MS2 24/56 Linfeng_20120515_BRCA1_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 556 3.46 0.00 0 3 100 2 590.30487 1179.60246 1.69 30.72 1835 1835 MS2 15/18 Linfeng_20120515_BRCA1_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 618 3.46 0.00 0 3 100 2 590.30402 1179.60076 0.24 28.92 1820 1820 MS2 17/18 Linfeng_20120514_rIgG_2.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 511 3.46 0.00 0 12 100 2 858.93085 1716.85442 1.89 34.05 2334 2334 MS2 18/28 Linfeng_20120514_rIgG_6.raw High LNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 592 3.47 0.00 0 7 100 2 679.35284 1357.69841 1.89 38.04 3035 3035 MS2 17/22 Linfeng_20120514_rIgG_8.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 405 3.47 0.00 0 3 100 2 829.40228 1657.79729 2.62 33.22 2025 2025 MS2 20/32 Linfeng_20120515_BRCA1_4.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 540 3.47 0.00 0 3 100 2 858.93188 1716.85649 3.09 34.24 2134 2134 MS2 20/28 Linfeng_20120515_BRCA1_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 570 3.48 0.00 0 4 100 2 590.30469 1179.60210 1.38 30.64 1906 1906 MS2 15/18 Linfeng_20120514_rIgG_8.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 494 3.48 0.00 0 16 100 2 633.32318 1265.63909 1.44 30.93 1981 1981 MS2 16/20 Linfeng_20120515_BRCA1_5.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 557 3.48 0.00 0 2 100 2 590.30420 1179.60112 0.55 28.72 1629 1629 MS2 15/18 Linfeng_20120515_BRCA1_7.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 395 3.49 0.00 0 3 100 2 692.34906 1383.69084 0.35 46.24 3187 3187 MS2 18/22 Linfeng_20120515_BRCA1_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 577 3.49 0.00 0 4 100 2 590.30450 1179.60173 1.07 29.21 1773 1773 MS2 17/18 Linfeng_20120514_rIgG_1.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 467 3.49 0.00 0 4 37 2 692.34924 1383.69121 0.61 46.23 4315 4315 MS2 18/22 Linfeng_20120514_rIgG_8.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 590 3.49 0.00 0 5 100 2 590.30469 1179.60210 1.38 29.16 1768 1768 MS2 17/18 Linfeng_20120514_rIgG_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 561 3.49 0.00 0 6 100 2 590.30499 1179.60271 1.90 30.43 1883 1883 MS2 16/18 Linfeng_20120514_rIgG_8.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 604 3.49 0.00 0 1 100 2 590.30408 1179.60088 0.34 30.91 2053 2053 MS2 14/18 Linfeng_20120514_rIgG_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 525 3.49 0.00 0 4 100 2 590.30511 1179.60295 2.10 30.18 1927 1927 MS2 15/18 Linfeng_20120514_rIgG_3.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 415 3.50 0.00 0 3 21 2 692.34906 1383.69084 0.35 46.63 4406 4406 MS2 17/22 Linfeng_20120515_BRCA1_10.raw High NMQDMVEDYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 58 3.50 0.00 0 8 100 2 650.77002 1300.53276 2.35 34.55 2207 2207 MS2 15/18 Linfeng_20120514_rIgG_7.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 615 3.50 0.00 0 15 100 2 738.39734 1475.78740 1.41 26.76 1545 1545 MS2 19/22 Linfeng_20120514_rIgG_3.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 606 3.50 0.00 0 4 100 3 572.95618 1716.85398 1.63 34.18 2387 2387 MS2 27/56 Linfeng_20120514_rIgG_1.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 389 3.50 0.00 0 11 100 2 829.40186 1657.79643 2.11 33.67 2449 2449 MS2 19/32 Linfeng_20120514_rIgG_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 567 3.50 0.00 0 5 100 2 590.30469 1179.60210 1.38 30.95 2059 2059 MS2 16/18 Linfeng_20120514_rIgG_2.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 548 3.51 0.00 0 6 100 2 858.93207 1716.85686 3.31 35.16 2455 2455 MS2 18/28 Linfeng_20120514_rIgG_5.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 553 3.51 0.00 0 9 100 2 590.30493 1179.60259 1.79 30.13 1781 1781 MS2 17/18 Linfeng_20120515_BRCA1_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 535 3.51 0.00 0 4 100 2 590.30499 1179.60271 1.90 30.47 1914 1914 MS2 16/18 Linfeng_20120514_rIgG_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 550 3.51 0.00 0 3 100 2 590.30487 1179.60246 1.69 30.38 1801 1801 MS2 16/18 Linfeng_20120515_BRCA1_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 538 3.52 0.00 0 2 100 2 590.30511 1179.60295 2.10 30.39 1951 1951 MS2 16/18 Linfeng_20120514_rIgG_3.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 531 3.52 0.00 0 0 100 2 997.49469 1993.98210 2.70 49.92 5154 5154 MS2 18/30 Linfeng_20120514_rIgG_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 556 3.52 0.00 0 2 100 2 590.30475 1179.60222 1.48 31.04 1803 1803 MS2 17/18 Linfeng_20120515_BRCA1_7.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 559 3.52 0.00 0 8 100 2 590.30511 1179.60295 2.10 29.53 1861 1861 MS2 16/18 Linfeng_20120514_rIgG_3.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 422 3.52 0.00 0 7 100 2 829.40320 1657.79912 3.73 32.65 2181 2181 MS2 19/32 Linfeng_20120514_rIgG_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 555 3.53 0.00 0 5 100 2 590.30530 1179.60332 2.41 30.67 1798 1798 MS2 15/18 Linfeng_20120514_rIgG_4.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 403 3.54 0.00 0 3 100 2 829.40173 1657.79619 1.96 32.92 2069 2069 MS2 19/32 Linfeng_20120515_BRCA1_1.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 527 3.55 0.00 0 1 100 2 858.93201 1716.85674 3.24 35.06 2289 2289 MS2 20/28 Linfeng_20120514_rIgG_4.raw High NMQDMVEDYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 56 3.55 0.00 0 5 83 2 650.76965 1300.53203 1.78 34.18 2442 2442 MS2 15/18 Linfeng_20120514_rIgG_3.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 570 3.55 0.00 0 12 100 3 572.95660 1716.85526 2.37 34.70 2519 2519 MS2 27/56 Linfeng_20120514_rIgG_3.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 612 3.56 0.00 0 1 100 2 738.39716 1475.78703 1.16 27.65 1558 1558 MS2 17/22 Linfeng_20120515_BRCA1_9.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 436 3.56 0.00 0 5 76 2 692.34869 1383.69011 -0.18 45.82 3574 3574 MS2 19/22 Linfeng_20120515_BRCA1_7.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 419 3.56 0.00 0 0 100 2 829.40009 1657.79289 -0.03 33.23 2098 2098 MS2 22/32 Linfeng_20120514_rIgG_5.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 590 3.56 0.00 0 23 56 2 651.86066 1302.71404 -0.89 49.15 4513 4513 MS2 18/22 Linfeng_20120515_BRCA1_4.raw High NMQDMVEDYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 51 3.56 0.00 0 5 59 2 650.76904 1300.53081 0.84 33.94 2496 2496 MS2 15/18 Linfeng_20120514_rIgG_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 618 3.57 0.00 0 9 100 2 590.30560 1179.60393 2.93 30.70 1911 1911 MS2 16/18 Linfeng_20120514_rIgG_8.raw High LNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 568 3.58 0.00 0 10 100 2 679.35168 1357.69609 0.18 39.55 2807 2807 MS2 16/22 Linfeng_20120515_BRCA1_4.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 510 3.58 0.00 0 0 100 2 858.93054 1716.85381 1.53 34.96 2378 2378 MS2 20/28 Linfeng_20120515_BRCA1_1.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 615 3.58 0.00 0 13 92 3 665.33221 1993.98209 2.70 55.74 5874 5874 MS2 26/60 Linfeng_20120514_rIgG_2.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 494 3.59 0.00 0 10 100 2 858.93134 1716.85539 2.45 34.21 2162 2162 MS2 19/28 Linfeng_20120515_BRCA1_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 554 3.60 0.00 0 4 100 2 590.30530 1179.60332 2.41 30.97 1769 1769 MS2 15/18 Linfeng_20120515_BRCA1_4.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 426 3.60 0.00 0 4 23 2 692.34918 1383.69109 0.52 45.86 3891 3891 MS2 17/22 Linfeng_20120515_BRCA1_1.raw High NMQDMVEDYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 54 3.60 0.00 0 6 100 2 650.77020 1300.53313 2.63 34.43 2224 2224 MS2 15/18 Linfeng_20120515_BRCA1_7.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 537 3.61 0.00 0 4 100 2 590.30548 1179.60369 2.72 30.97 2012 2012 MS2 15/18 Linfeng_20120514_rIgG_3.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 610 3.61 0.00 0 37 100 3 665.33167 1993.98044 1.87 55.91 5447 5447 MS2 25/60 Linfeng_20120514_rIgG_5.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 475 3.61 0.00 0 4 19 2 692.35010 1383.69292 1.85 46.39 4265 4265 MS2 17/22 Linfeng_20120514_rIgG_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 595 3.62 0.00 0 7 100 2 590.30420 1179.60112 0.55 28.76 1646 1646 MS2 16/18 Linfeng_20120514_rIgG_6.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 594 3.62 0.00 0 7 100 2 590.30426 1179.60124 0.65 29.74 1917 1917 MS2 17/18 Linfeng_20120514_rIgG_2.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 512 3.62 0.00 0 4 100 2 633.32349 1265.63970 1.92 30.78 1843 1843 MS2 16/20 Linfeng_20120515_BRCA1_1.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 627 3.62 0.00 0 20 100 3 665.33240 1993.98264 2.97 56.56 5428 5428 MS2 28/60 Linfeng_20120514_rIgG_3.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 485 3.63 0.00 0 7 100 2 692.34772 1383.68816 -1.59 47.03 3762 3762 MS2 18/22 Linfeng_20120515_BRCA1_6.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 537 3.63 0.00 0 3 100 2 858.93195 1716.85661 3.16 33.95 2221 2221 MS2 18/28 Linfeng_20120515_BRCA1_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 550 3.63 0.00 0 4 100 2 590.30493 1179.60259 1.79 30.42 1908 1908 MS2 16/18 Linfeng_20120514_rIgG_1.raw High NKLNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 600 3.64 0.00 1 0 100 2 800.42126 1599.83525 0.94 43.72 3627 3627 MS2 18/26 Linfeng_20120514_rIgG_1.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 571 3.64 0.00 0 3 100 2 738.39746 1475.78765 1.57 27.03 1570 1570 MS2 16/22 Linfeng_20120514_rIgG_8.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 504 3.64 0.00 0 4 61 2 633.32263 1265.63799 0.57 30.33 1983 1983 MS2 18/20 Linfeng_20120514_rIgG_2.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 419 3.64 0.00 0 24 100 2 829.40106 1657.79485 1.15 32.63 2287 2287 MS2 19/32 Linfeng_20120514_rIgG_2.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 617 3.64 0.00 0 2 100 2 738.39697 1475.78667 0.91 29.06 1769 1769 MS2 17/22 Linfeng_20120514_rIgG_8.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 528 3.64 0.00 0 3 100 2 858.93268 1716.85808 4.02 35.21 2316 2316 MS2 19/28 Linfeng_20120515_BRCA1_4.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 445 3.64 0.00 0 5 61 2 692.35022 1383.69316 2.02 46.82 3894 3894 MS2 18/22 Linfeng_20120515_BRCA1_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 621 3.64 0.00 0 1 100 2 590.30408 1179.60088 0.34 28.38 1614 1614 MS2 17/18 Linfeng_20120514_rIgG_6.raw High LDSELKNMQDMVEDYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 227 3.65 0.00 1 30 100 3 662.63599 1985.89341 -0.50 47.82 4196 4196 MS2 24/60 Linfeng_20120514_rIgG_10.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 473 3.65 0.00 0 4 88 2 692.34967 1383.69206 1.23 46.70 3680 3680 MS2 17/22 Linfeng_20120514_rIgG_7.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 565 3.65 0.00 0 2 100 2 590.30560 1179.60393 2.93 30.48 1960 1960 MS2 16/18 Linfeng_20120514_rIgG_3.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 466 3.65 0.00 0 2 11 2 692.34924 1383.69121 0.61 45.99 4252 4252 MS2 18/22 Linfeng_20120515_BRCA1_10.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 546 3.65 0.00 0 3 100 2 590.30481 1179.60234 1.59 30.76 2041 2041 MS2 15/18 Linfeng_20120514_rIgG_2.raw High SLNNQFASFIDKVR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 541 3.66 0.00 1 9 53 2 819.93250 1638.85771 -1.33 48.81 4447 4447 MS2 17/26 Linfeng_20120514_rIgG_10.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 634 3.66 0.00 0 0 100 2 738.39648 1475.78569 0.25 29.15 1650 1650 MS2 18/22 Linfeng_20120514_rIgG_7.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 490 3.66 0.00 0 26 100 2 651.86176 1302.71623 0.80 49.71 4546 4546 MS2 18/22 Linfeng_20120515_BRCA1_7.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 655 3.67 0.00 0 3 100 2 738.39569 1475.78411 -0.82 28.42 1571 1571 MS2 19/22 Linfeng_20120515_BRCA1_3.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 477 3.67 0.00 0 4 18 2 692.34979 1383.69231 1.41 46.33 3695 3695 MS2 19/22 Linfeng_20120515_BRCA1_7.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 598 3.67 0.00 0 19 100 2 590.30432 1179.60137 0.76 29.06 1675 1675 MS2 16/18 Linfeng_20120514_rIgG_6.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 515 3.68 0.00 0 5 100 2 858.93152 1716.85576 2.67 33.84 2337 2337 MS2 18/28 Linfeng_20120514_rIgG_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 602 3.68 0.00 0 2 100 2 590.30426 1179.60124 0.65 28.68 1643 1643 MS2 16/18 Linfeng_20120514_rIgG_4.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 472 3.68 0.00 0 2 46 2 692.34930 1383.69133 0.70 45.86 4226 4226 MS2 19/22 Linfeng_20120514_rIgG_8.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 573 3.68 0.00 0 6 100 2 590.30469 1179.60210 1.38 30.62 1931 1931 MS2 16/18 Linfeng_20120514_rIgG_1.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 517 3.69 0.00 0 3 100 2 633.32355 1265.63982 2.02 31.12 1746 1746 MS2 16/20 Linfeng_20120515_BRCA1_2.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 503 3.69 0.00 0 0 100 2 858.93103 1716.85478 2.10 34.14 2147 2147 MS2 20/28 Linfeng_20120514_rIgG_7.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 609 3.69 0.00 0 18 41 3 665.33136 1993.97953 1.41 55.46 5623 5623 MS2 27/60 Linfeng_20120515_BRCA1_1.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 443 3.69 0.00 0 5 20 2 692.35022 1383.69316 2.02 46.47 3728 3728 MS2 18/22 Linfeng_20120515_BRCA1_7.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 653 3.70 0.00 0 5 100 2 738.39661 1475.78594 0.42 28.90 1734 1734 MS2 16/22 Linfeng_20120515_BRCA1_10.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 600 3.70 0.00 0 3 100 2 738.39844 1475.78960 2.90 27.34 1619 1619 MS2 16/22 Linfeng_20120515_BRCA1_8.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 517 3.70 0.00 0 4 95 2 997.49231 1993.97734 0.32 55.58 5783 5783 MS2 18/30 Linfeng_20120514_rIgG_1.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 606 3.70 0.00 0 25 90 3 665.33160 1993.98026 1.78 55.54 5357 5357 MS2 26/60 Linfeng_20120514_rIgG_5.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 607 3.71 0.00 0 5 100 3 665.33124 1993.97916 1.23 55.77 5268 5268 MS2 26/60 Linfeng_20120514_rIgG_3.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 468 3.72 0.00 0 4 37 2 692.34937 1383.69145 0.79 46.63 3863 3863 MS2 19/22 Linfeng_20120514_rIgG_4.raw High LALDLEIATYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 355 3.72 0.00 0 2 18 2 639.35840 1277.70952 -0.40 48.94 4288 4288 MS2 18/20 Linfeng_20120515_BRCA1_3.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 533 3.72 0.00 0 21 100 2 858.92871 1716.85015 -0.60 34.19 2624 2624 MS2 19/28 Linfeng_20120515_BRCA1_5.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 531 3.72 0.00 0 5 100 2 590.30518 1179.60307 2.21 29.99 1909 1909 MS2 16/18 Linfeng_20120514_rIgG_3.raw High TNAENEFVTIK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 495 3.72 0.00 0 3 100 2 633.32318 1265.63909 1.44 31.09 1809 1809 MS2 17/20 Linfeng_20120515_BRCA1_7.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 582 3.72 0.00 0 3 100 2 590.30420 1179.60112 0.55 28.46 1606 1606 MS2 16/18 Linfeng_20120515_BRCA1_7.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 438 3.72 0.00 0 12 100 2 829.40289 1657.79851 3.36 32.95 2289 2289 MS2 21/32 Linfeng_20120515_BRCA1_10.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 626 3.72 0.00 0 1 8 2 651.86066 1302.71404 -0.89 49.03 4698 4698 MS2 18/22 Linfeng_20120514_rIgG_9.raw High LALDLEIATYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 366 3.73 0.00 0 0 28 2 639.35822 1277.70915 -0.69 48.94 3741 3741 MS2 18/20 Linfeng_20120515_BRCA1_2.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 576 3.73 0.00 0 1 100 2 738.39807 1475.78887 2.40 27.76 1671 1671 MS2 18/22 Linfeng_20120515_BRCA1_8.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 605 3.73 0.00 0 1 100 2 738.39685 1475.78642 0.75 27.44 1594 1594 MS2 19/22 Linfeng_20120514_rIgG_10.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 542 3.74 0.00 0 3 100 2 590.30536 1179.60344 2.52 30.56 1967 1967 MS2 16/18 Linfeng_20120514_rIgG_3.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 607 3.74 0.00 0 41 100 2 738.39679 1475.78630 0.66 29.76 1829 1829 MS2 16/22 Linfeng_20120514_rIgG_1.raw High LNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 538 3.74 0.00 0 4 100 2 679.35345 1357.69963 2.79 38.02 2623 2623 MS2 19/22 Linfeng_20120514_rIgG_4.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 519 3.74 0.00 0 19 68 2 997.49426 1993.98125 2.28 55.52 5806 5806 MS2 19/30 Linfeng_20120514_rIgG_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 589 3.74 0.00 0 0 100 2 590.30438 1179.60149 0.86 28.44 1696 1696 MS2 17/18 Linfeng_20120514_rIgG_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 560 3.74 0.00 0 6 100 2 590.30475 1179.60222 1.48 29.46 1853 1853 MS2 15/18 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 567 3.75 0.00 0 2 100 2 590.30426 1179.60124 0.65 29.16 1848 1848 MS2 16/18 Linfeng_20120514_rIgG_2.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 570 3.75 0.00 0 10 100 2 651.86029 1302.71330 -1.45 50.27 5283 5283 MS2 18/22 Linfeng_20120514_rIgG_2.raw High LALDLEIATYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 359 3.75 0.00 0 2 2 2 639.35846 1277.70964 -0.30 48.95 4669 4669 MS2 18/20 Linfeng_20120514_rIgG_9.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 565 3.75 0.00 0 2 100 2 590.30573 1179.60417 3.14 30.82 1995 1995 MS2 16/18 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 571 3.75 0.00 0 4 100 2 590.30566 1179.60405 3.04 30.66 2023 2023 MS2 16/18 Linfeng_20120515_BRCA1_8.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 612 3.76 0.00 0 66 100 3 665.33136 1993.97953 1.41 56.69 6075 6075 MS2 23/60 Linfeng_20120514_rIgG_1.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 465 3.77 0.00 0 1 100 2 858.92981 1716.85234 0.68 34.82 2643 2643 MS2 20/28 Linfeng_20120514_rIgG_2.raw High LALDLEIATYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 396 3.77 0.00 0 1 3 2 639.35822 1277.70915 -0.69 48.97 4454 4454 MS2 18/20 Linfeng_20120515_BRCA1_9.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 576 3.77 0.00 0 6 100 2 590.30481 1179.60234 1.59 30.44 1802 1802 MS2 17/18 Linfeng_20120514_rIgG_6.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 631 3.77 0.00 0 5 100 2 738.39648 1475.78569 0.25 29.07 1645 1645 MS2 18/22 Linfeng_20120514_rIgG_5.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 609 3.77 0.00 0 1 100 2 738.39746 1475.78765 1.57 27.53 1619 1619 MS2 17/22 Linfeng_20120514_rIgG_9.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 425 3.77 0.00 0 6 100 2 829.40167 1657.79607 1.89 33.82 2385 2385 MS2 20/32 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 609 3.78 0.00 0 1 100 2 590.30402 1179.60076 0.24 28.69 1648 1648 MS2 17/18 Linfeng_20120515_BRCA1_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 590 3.78 0.00 0 4 100 2 590.30420 1179.60112 0.55 29.06 1758 1758 MS2 17/18 Linfeng_20120514_rIgG_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 541 3.79 0.00 0 3 100 2 590.30493 1179.60259 1.79 29.25 1834 1834 MS2 16/18 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 557 3.79 0.00 0 3 100 2 590.30457 1179.60185 1.17 29.01 1832 1832 MS2 17/18 Linfeng_20120514_rIgG_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 597 3.79 0.00 0 7 100 2 590.30426 1179.60124 0.65 28.85 1725 1725 MS2 17/18 Linfeng_20120514_rIgG_10.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 596 3.79 0.00 0 0 100 2 738.39856 1475.78984 3.06 27.63 1653 1653 MS2 16/22 Linfeng_20120515_BRCA1_8.raw High FSScGGGGGSFGAGGGFGSR Unambiguous 1 1 IPI00220327.4 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 70 3.79 0.00 0 5 100 2 883.37256 1765.73784 1.71 29.74 1826 1826 MS2 24/38 Linfeng_20120514_rIgG_1.raw High LNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 587 3.79 0.00 0 6 100 2 679.35272 1357.69817 1.71 39.03 2747 2747 MS2 18/22 Linfeng_20120514_rIgG_4.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 617 3.80 0.00 0 72 100 3 665.33221 1993.98209 2.70 56.04 5956 5956 MS2 26/60 Linfeng_20120514_rIgG_2.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 617 3.81 0.00 0 0 100 2 738.39758 1475.78789 1.74 27.45 1612 1612 MS2 17/22 Linfeng_20120514_rIgG_9.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 610 3.81 0.00 0 27 100 2 738.39740 1475.78752 1.49 29.91 1839 1839 MS2 19/22 Linfeng_20120515_BRCA1_10.raw High FSScGGGGGSFGAGGGFGSR Unambiguous 1 1 IPI00220327.4 C4(Carbamidomethyl) CID 1.0000 0.0000 1 1 76 3.81 0.00 0 0 100 2 883.37305 1765.73882 2.27 30.61 1972 1972 MS2 23/38 Linfeng_20120514_rIgG_3.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 636 3.81 0.00 0 4 2 2 651.86072 1302.71416 -0.79 49.02 4684 4684 MS2 19/22 Linfeng_20120515_BRCA1_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 567 3.81 0.00 0 4 100 2 590.30426 1179.60124 0.65 30.54 1749 1749 MS2 16/18 Linfeng_20120514_rIgG_7.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 597 3.82 0.00 0 20 100 3 665.33069 1993.97751 0.40 56.56 6045 6045 MS2 27/60 Linfeng_20120514_rIgG_1.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 625 3.82 0.00 0 1 100 2 738.39673 1475.78618 0.58 29.02 1671 1671 MS2 18/22 Linfeng_20120514_rIgG_6.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 412 3.82 0.00 0 2 100 2 692.34900 1383.69072 0.26 46.82 4134 4134 MS2 18/22 Linfeng_20120514_rIgG_9.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 626 3.83 0.00 0 23 100 3 665.33240 1993.98264 2.97 56.34 6032 6032 MS2 24/60 Linfeng_20120514_rIgG_2.raw High SLNNQFASFIDKVR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 542 3.83 0.00 1 3 57 2 819.93097 1638.85466 -3.20 48.82 4860 4860 MS2 18/26 Linfeng_20120514_rIgG_1.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 609 3.83 0.00 0 11 100 2 738.39758 1475.78789 1.74 31.55 2130 2130 MS2 17/22 Linfeng_20120514_rIgG_2.raw High NKLNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 560 3.83 0.00 1 0 100 2 800.42078 1599.83428 0.33 43.38 3516 3516 MS2 19/26 Linfeng_20120514_rIgG_3.raw High LALDLEIATYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 396 3.84 0.00 0 2 6 2 639.35809 1277.70891 -0.88 48.95 4243 4243 MS2 18/20 Linfeng_20120515_BRCA1_6.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 643 3.85 0.00 0 1 100 2 738.39636 1475.78545 0.09 29.03 1675 1675 MS2 19/22 Linfeng_20120515_BRCA1_1.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 459 3.85 0.00 0 2 11 2 692.34973 1383.69219 1.32 46.13 4285 4285 MS2 19/22 Linfeng_20120515_BRCA1_10.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 507 3.85 0.00 0 20 100 2 997.49280 1993.97832 0.81 55.55 5360 5360 MS2 18/30 Linfeng_20120514_rIgG_5.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 611 3.85 0.00 0 1 100 2 738.39679 1475.78630 0.66 28.04 1680 1680 MS2 19/22 Linfeng_20120514_rIgG_8.raw High SLNNQFASFIDK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 416 3.85 0.00 0 3 34 2 692.34912 1383.69097 0.44 46.27 3830 3830 MS2 18/22 Linfeng_20120514_rIgG_10.raw High LALDLEIATYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 341 3.85 0.00 0 4 1 2 639.35889 1277.71050 0.36 48.96 4577 4577 MS2 18/20 Linfeng_20120514_rIgG_3.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 652 3.86 0.00 0 1 100 2 738.39655 1475.78581 0.33 27.25 1575 1575 MS2 16/22 Linfeng_20120514_rIgG_10.raw High LALDLEIATYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 369 3.86 0.00 0 1 6 2 639.35663 1277.70598 -3.17 48.95 5295 5295 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High SLNNQFASFIDKVR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 545 3.87 0.00 1 7 49 2 819.93243 1638.85759 -1.41 48.78 4929 4929 MS2 19/26 Linfeng_20120514_rIgG_2.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 443 3.87 0.00 0 0 100 2 829.40234 1657.79741 2.70 32.90 2108 2108 MS2 19/32 Linfeng_20120514_rIgG_6.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 628 3.87 0.00 0 8 100 2 590.30408 1179.60088 0.34 28.80 1652 1652 MS2 17/18 Linfeng_20120514_rIgG_6.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 609 3.87 0.00 0 1 100 2 738.39606 1475.78484 -0.33 29.25 1670 1670 MS2 20/22 Linfeng_20120515_BRCA1_7.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 596 3.87 0.00 0 14 100 3 665.33069 1993.97751 0.40 56.30 5980 5980 MS2 30/60 Linfeng_20120514_rIgG_1.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 614 3.88 0.00 0 4 100 2 738.39648 1475.78569 0.25 29.15 1768 1768 MS2 17/22 Linfeng_20120514_rIgG_9.raw High LNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 533 3.88 0.00 0 3 100 2 679.35205 1357.69682 0.72 38.92 3055 3055 MS2 19/22 Linfeng_20120514_rIgG_3.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 522 3.88 0.00 0 5 13 2 651.86090 1302.71453 -0.51 49.05 4611 4611 MS2 18/22 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 585 3.89 0.00 0 2 100 2 590.30469 1179.60210 1.38 30.56 1925 1925 MS2 16/18 Linfeng_20120514_rIgG_1.raw High LALDLEIATYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 428 3.90 0.00 0 2 1 2 639.35791 1277.70854 -1.16 48.97 4993 4993 MS2 18/20 Linfeng_20120514_rIgG_2.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 498 3.90 0.00 0 1 100 2 858.93115 1716.85503 2.24 34.91 2552 2552 MS2 21/28 Linfeng_20120514_rIgG_3.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 612 3.91 0.00 0 1 100 2 738.39618 1475.78508 -0.16 28.06 1568 1568 MS2 20/22 Linfeng_20120514_rIgG_5.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 511 3.91 0.00 0 6 100 2 858.93256 1716.85784 3.88 34.05 2158 2158 MS2 17/28 Linfeng_20120514_rIgG_4.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 576 3.91 0.00 0 3 7 2 651.86102 1302.71477 -0.32 49.03 4901 4901 MS2 19/22 Linfeng_20120514_rIgG_6.raw High LALDLEIATYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 371 3.92 0.00 0 2 1 2 639.35815 1277.70903 -0.78 48.95 4997 4997 MS2 18/20 Linfeng_20120514_rIgG_8.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 665 3.92 0.00 0 4 100 2 738.39667 1475.78606 0.50 29.09 1762 1762 MS2 19/22 Linfeng_20120514_rIgG_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 568 3.92 0.00 0 4 76 2 590.30426 1179.60124 0.65 28.30 1751 1751 MS2 16/18 Linfeng_20120514_rIgG_2.raw High LALDLEIATYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 371 3.92 0.00 0 2 7 2 639.35828 1277.70928 -0.59 48.94 4866 4866 MS2 18/20 Linfeng_20120514_rIgG_6.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 572 3.93 0.00 0 7 100 3 572.95667 1716.85544 2.48 34.30 2407 2407 MS2 29/56 Linfeng_20120514_rIgG_1.raw High LNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 522 3.93 0.00 0 0 100 2 679.35181 1357.69634 0.36 39.06 2929 2929 MS2 17/22 Linfeng_20120514_rIgG_10.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 612 3.94 0.00 0 5 49 3 665.33014 1993.97586 -0.42 55.56 5777 5777 MS2 29/60 Linfeng_20120514_rIgG_1.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 614 3.95 0.00 0 2 83 2 738.39752 1475.78777 1.66 28.78 1788 1788 MS2 20/22 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 550 3.95 0.00 0 2 100 2 590.30493 1179.60259 1.79 28.53 1760 1760 MS2 16/18 Linfeng_20120514_rIgG_3.raw High NKLNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 541 3.95 0.00 1 0 100 2 800.42035 1599.83342 -0.21 43.91 3671 3671 MS2 19/26 Linfeng_20120514_rIgG_1.raw High LALDLEIATYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 373 3.95 0.00 0 1 6 2 639.35852 1277.70976 -0.21 48.95 4221 4221 MS2 18/20 Linfeng_20120514_rIgG_7.raw High LNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 593 3.96 0.00 0 7 100 2 679.35254 1357.69780 1.44 38.96 3078 3078 MS2 19/22 Linfeng_20120514_rIgG_6.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 451 3.96 0.00 0 0 100 2 829.40289 1657.79851 3.36 33.94 2143 2143 MS2 22/32 Linfeng_20120514_rIgG_4.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 593 3.97 0.00 0 1 3 3 665.32886 1993.97202 -2.35 49.01 5318 5318 MS2 25/60 Linfeng_20120515_BRCA1_8.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 632 3.97 0.00 0 7 100 2 738.39648 1475.78569 0.25 30.55 2014 2014 MS2 19/22 Linfeng_20120514_rIgG_2.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 614 3.97 0.00 0 3 100 2 738.39709 1475.78691 1.08 27.58 1607 1607 MS2 19/22 Linfeng_20120515_BRCA1_10.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 432 3.98 0.00 0 29 100 2 829.40063 1657.79399 0.63 32.66 2290 2290 MS2 20/32 Linfeng_20120514_rIgG_2.raw High LALDLEIATYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 349 3.99 0.00 0 2 2 2 639.35779 1277.70830 -1.36 48.93 4649 4649 MS2 18/20 Linfeng_20120515_BRCA1_1.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 619 3.99 0.00 0 18 100 3 665.33301 1993.98447 3.89 56.54 5570 5570 MS2 26/60 Linfeng_20120514_rIgG_5.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 617 4.00 0.00 0 2 77 2 738.39691 1475.78655 0.83 27.89 1646 1646 MS2 20/22 Linfeng_20120515_BRCA1_10.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 417 4.00 0.00 0 5 100 2 829.40033 1657.79338 0.27 33.18 2423 2423 MS2 17/32 Linfeng_20120515_BRCA1_8.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 653 4.01 0.00 0 1 100 2 738.39667 1475.78606 0.50 28.14 1677 1677 MS2 18/22 Linfeng_20120514_rIgG_9.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 652 4.02 0.00 0 1 100 2 738.39575 1475.78423 -0.74 28.23 1576 1576 MS2 19/22 Linfeng_20120515_BRCA1_7.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 423 4.02 0.00 0 3 100 2 829.40179 1657.79631 2.03 33.67 2312 2312 MS2 21/32 Linfeng_20120514_rIgG_1.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 515 4.03 0.00 0 3 1 2 651.86084 1302.71440 -0.61 49.03 5326 5326 MS2 19/22 Linfeng_20120515_BRCA1_8.raw High LDSELKNMQDMVEDYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 226 4.04 0.00 1 16 100 3 662.63599 1985.89341 -0.50 48.46 4349 4349 MS2 24/60 Linfeng_20120514_rIgG_10.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 612 4.04 0.00 0 24 100 3 665.33014 1993.97586 -0.42 55.54 5209 5209 MS2 28/60 Linfeng_20120514_rIgG_3.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 611 4.06 0.00 0 2 100 2 738.39618 1475.78508 -0.16 27.04 1542 1542 MS2 20/22 Linfeng_20120514_rIgG_1.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 654 4.07 0.00 0 0 100 2 738.39575 1475.78423 -0.74 28.47 1581 1581 MS2 18/22 Linfeng_20120515_BRCA1_6.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 578 4.07 0.00 0 3 100 3 572.95660 1716.85526 2.37 34.33 2465 2465 MS2 31/56 Linfeng_20120514_rIgG_3.raw High LALDLEIATYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 380 4.07 0.00 0 2 1 2 639.35913 1277.71099 0.75 48.96 4352 4352 MS2 18/20 Linfeng_20120515_BRCA1_7.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 574 4.09 0.00 0 10 100 3 572.95642 1716.85471 2.06 34.44 2431 2431 MS2 29/56 Linfeng_20120514_rIgG_1.raw High LALDLEIATYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 371 4.09 0.00 0 2 2 2 639.35760 1277.70793 -1.64 48.94 4488 4488 MS2 18/20 Linfeng_20120514_rIgG_10.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 596 4.10 0.00 0 18 100 3 665.33075 1993.97770 0.49 55.91 5881 5881 MS2 25/60 Linfeng_20120514_rIgG_1.raw High LALDLEIATYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 353 4.11 0.00 0 3 13 2 639.35767 1277.70806 -1.55 48.97 4448 4448 MS2 18/20 Linfeng_20120514_rIgG_4.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 548 4.11 0.00 0 3 0 2 651.86115 1302.71501 -0.14 49.04 4473 4473 MS2 19/22 Linfeng_20120514_rIgG_4.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 514 4.11 0.00 0 4 1 2 651.86206 1302.71684 1.27 49.03 4476 4476 MS2 19/22 Linfeng_20120515_BRCA1_9.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 607 4.13 0.00 0 2 100 2 738.39679 1475.78630 0.66 29.00 1665 1665 MS2 19/22 Linfeng_20120514_rIgG_4.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 599 4.13 0.00 0 2 100 2 738.39844 1475.78960 2.90 27.86 1679 1679 MS2 19/22 Linfeng_20120515_BRCA1_8.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 618 4.13 0.00 0 3 100 2 738.39685 1475.78642 0.75 29.46 1818 1818 MS2 20/22 Linfeng_20120515_BRCA1_5.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 612 4.14 0.00 0 11 100 3 665.33063 1993.97733 0.31 56.51 6032 6032 MS2 27/60 Linfeng_20120514_rIgG_1.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 615 4.14 0.00 0 1 100 2 738.39740 1475.78752 1.49 29.79 1890 1890 MS2 20/22 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 546 4.14 0.00 0 4 100 2 590.30530 1179.60332 2.41 30.30 1940 1940 MS2 17/18 Linfeng_20120514_rIgG_3.raw High SGGGFSSGSAGIINYQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 419 4.17 0.00 0 4 100 2 829.40149 1657.79570 1.67 33.47 2377 2377 MS2 20/32 Linfeng_20120515_BRCA1_10.raw High LNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 525 4.18 0.00 0 2 100 2 679.35382 1357.70036 3.32 38.76 3012 3012 MS2 19/22 Linfeng_20120514_rIgG_1.raw High LNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 566 4.20 0.00 0 1 100 2 679.35272 1357.69817 1.71 38.76 3218 3218 MS2 19/22 Linfeng_20120514_rIgG_2.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 615 4.20 0.00 0 2 100 2 738.39618 1475.78508 -0.16 28.46 1690 1690 MS2 20/22 Linfeng_20120514_rIgG_10.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 486 4.20 0.00 0 1 100 2 858.93158 1716.85588 2.74 35.04 2650 2650 MS2 20/28 Linfeng_20120515_BRCA1_10.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 623 4.21 0.00 0 3 100 2 738.39691 1475.78655 0.83 29.47 1782 1782 MS2 19/22 Linfeng_20120514_rIgG_10.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 604 4.22 0.00 0 10 100 3 665.33124 1993.97916 1.23 56.08 5926 5926 MS2 27/60 Linfeng_20120514_rIgG_1.raw High LALDLEIATYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 367 4.22 0.00 0 2 6 2 639.35809 1277.70891 -0.88 48.95 4439 4439 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 519 4.22 0.00 0 1 100 2 679.35217 1357.69707 0.90 38.95 3300 3300 MS2 19/22 Linfeng_20120515_BRCA1_10.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 605 4.23 0.00 0 1 100 2 590.30426 1179.60124 0.65 28.57 1614 1614 MS2 17/18 Linfeng_20120515_BRCA1_7.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 647 4.23 0.00 0 1 100 2 738.39642 1475.78557 0.17 28.21 1611 1611 MS2 19/22 Linfeng_20120515_BRCA1_9.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 622 4.23 0.00 0 2 100 2 738.39648 1475.78569 0.25 28.33 1576 1576 MS2 19/22 Linfeng_20120515_BRCA1_4.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 614 4.26 0.00 0 3 100 2 738.39740 1475.78752 1.49 27.49 1598 1598 MS2 20/22 Linfeng_20120515_BRCA1_10.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 629 4.26 0.00 0 0 100 2 738.39825 1475.78923 2.65 27.71 1665 1665 MS2 19/22 Linfeng_20120515_BRCA1_8.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 622 4.26 0.00 0 2 100 2 738.39734 1475.78740 1.41 27.64 1615 1615 MS2 19/22 Linfeng_20120515_BRCA1_10.raw High AEAESLYQSKYEELQITAGR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 568 4.26 0.00 1 19 100 3 762.71484 2286.12998 2.22 39.50 3310 3310 MS2 28/76 Linfeng_20120514_rIgG_2.raw High LNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 592 4.27 0.00 0 6 100 2 679.35114 1357.69499 -0.63 38.95 2913 2913 MS2 19/22 Linfeng_20120515_BRCA1_1.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 618 4.29 0.00 0 3 97 2 738.39697 1475.78667 0.91 29.54 1894 1894 MS2 20/22 Linfeng_20120514_rIgG_2.raw High SLNNQFASFIDKVR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 567 4.30 0.00 1 2 38 2 819.93146 1638.85564 -2.60 48.81 4533 4533 MS2 18/26 Linfeng_20120514_rIgG_3.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 615 4.31 0.00 0 3 95 2 738.39697 1475.78667 0.91 27.71 1624 1624 MS2 19/22 Linfeng_20120515_BRCA1_10.raw High LNDLEDALQQAK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 598 4.32 0.00 0 5 100 2 679.35260 1357.69792 1.53 38.42 3415 3415 MS2 19/22 Linfeng_20120515_BRCA1_8.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 662 4.32 0.00 0 2 100 2 738.39667 1475.78606 0.50 28.38 1566 1566 MS2 20/22 Linfeng_20120515_BRCA1_2.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 647 4.32 0.00 0 4 100 2 738.39636 1475.78545 0.09 28.44 1722 1722 MS2 20/22 Linfeng_20120515_BRCA1_5.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 619 4.33 0.00 0 8 100 3 665.33215 1993.98191 2.61 55.83 5899 5899 MS2 28/60 Linfeng_20120514_rIgG_2.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 567 4.34 0.00 0 2 100 2 738.39893 1475.79057 3.56 27.67 1660 1660 MS2 20/22 Linfeng_20120515_BRCA1_8.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 612 4.37 0.00 0 0 100 2 738.39691 1475.78655 0.83 27.85 1574 1574 MS2 17/22 Linfeng_20120515_BRCA1_9.raw High QISNLQQSISDAEQR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 513 4.38 0.00 0 2 100 2 858.93146 1716.85564 2.60 34.84 2491 2491 MS2 22/28 Linfeng_20120514_rIgG_1.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 631 4.40 0.00 0 2 100 2 738.39648 1475.78569 0.25 28.01 1581 1581 MS2 19/22 Linfeng_20120514_rIgG_6.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 598 4.41 0.00 0 1 100 2 738.39612 1475.78496 -0.25 28.14 1577 1577 MS2 19/22 Linfeng_20120514_rIgG_7.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 629 4.42 0.00 0 9 29 3 665.33197 1993.98136 2.33 55.51 5804 5804 MS2 33/60 Linfeng_20120514_rIgG_2.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 661 4.43 0.00 0 3 68 2 738.39661 1475.78594 0.42 28.03 1586 1586 MS2 20/22 Linfeng_20120515_BRCA1_1.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 597 4.43 0.00 0 2 1 2 651.86047 1302.71367 -1.17 49.00 4510 4510 MS2 19/22 Linfeng_20120514_rIgG_10.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 613 4.44 0.00 0 2 90 2 738.39691 1475.78655 0.83 27.75 1629 1629 MS2 20/22 Linfeng_20120515_BRCA1_10.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 617 4.45 0.00 0 3 24 2 738.39703 1475.78679 1.00 27.52 1656 1656 MS2 20/22 Linfeng_20120514_rIgG_2.raw High SKAEAESLYQSKYEELQITAGR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 592 4.46 0.00 2 1 100 3 834.42419 2501.25803 2.45 39.07 3255 3255 MS2 31/84 Linfeng_20120514_rIgG_2.raw High SLDLDSIIAEVK Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 539 4.46 0.00 0 4 0 2 651.86127 1302.71526 0.05 49.02 5022 5022 MS2 19/22 Linfeng_20120515_BRCA1_10.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 610 4.50 0.00 0 3 73 2 738.39685 1475.78642 0.75 27.98 1579 1579 MS2 20/22 Linfeng_20120514_rIgG_4.raw High LALDLEIATYR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 371 4.52 0.00 0 3 11 2 639.35822 1277.70915 -0.69 48.97 4913 4913 MS2 18/20 Linfeng_20120514_rIgG_1.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 607 4.53 0.00 0 1 100 2 738.39716 1475.78703 1.16 27.73 1640 1640 MS2 20/22 Linfeng_20120514_rIgG_9.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 648 4.56 0.00 0 2 62 2 738.39636 1475.78545 0.09 28.53 1773 1773 MS2 20/22 Linfeng_20120514_rIgG_2.raw High THNLEPYFESFINNLR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 616 4.58 0.00 0 14 100 3 665.33203 1993.98154 2.42 56.65 6105 6105 MS2 26/60 Linfeng_20120514_rIgG_2.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 627 4.60 0.00 0 2 38 2 738.39673 1475.78618 0.58 28.07 1653 1653 MS2 20/22 Linfeng_20120514_rIgG_1.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 576 4.66 0.00 0 3 27 2 738.39807 1475.78887 2.40 27.78 1668 1668 MS2 20/22 Linfeng_20120514_rIgG_3.raw High LDNLQQEIDFLTALYQAELSQMQTQISETNVILSMDNNR Unambiguous 1 1 IPI00220327.4 CID 1.0000 0.0000 1 1 317 5.44 0.00 0 8 100 4 1132.56006 4527.21840 3.63 55.48 5797 5797 MS2 39/228 Linfeng_20120514_rIgG_2.raw IPI00021304.1 "Keratin, type II cytoskeletal 2 epidermal" 28.84 1 10 14 465 803.06 28.84 14 257 627.48 23.57 12 208 645 65.8 8.00 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High TAAENDFVTLK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 571 2.00 0.00 0 22 100 2 604.81256 1208.61785 1.69 32.03 2041 2041 MS2 10/20 Linfeng_20120514_rIgG_10.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 547 2.00 0.00 0 10 100 2 597.31329 1193.61931 2.67 30.60 2015 2015 MS2 13/18 Linfeng_20120515_BRCA1_8.raw High NVQDAIADAEQR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 397 2.00 0.00 0 0 100 2 665.32397 1329.64067 0.96 28.09 1657 1657 MS2 13/22 Linfeng_20120514_rIgG_1.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 330 2.01 0.00 0 28 100 2 570.27509 1139.54289 2.38 34.25 2161 2161 MS2 10/16 Linfeng_20120514_rIgG_7.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 335 2.02 0.00 0 17 100 2 570.27478 1139.54228 1.85 33.48 2379 2379 MS2 12/16 Linfeng_20120515_BRCA1_10.raw High NVQDAIADAEQR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 385 2.02 0.00 0 14 100 2 665.32336 1329.63945 0.04 28.40 1582 1582 MS2 14/22 Linfeng_20120515_BRCA1_4.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 630 2.03 0.00 0 3 2 2 665.36591 1329.72453 -1.17 49.04 4475 4475 MS2 11/22 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 436 2.04 0.00 0 32 100 2 632.34998 1263.69267 -1.35 47.14 4939 4939 MS2 16/20 Linfeng_20120515_BRCA1_5.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 534 2.04 0.00 0 0 100 2 597.31256 1193.61785 1.44 30.27 1768 1768 MS2 13/18 Linfeng_20120515_BRCA1_9.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 561 2.04 0.00 0 23 100 2 597.31281 1193.61833 1.85 30.46 1921 1921 MS2 13/18 Linfeng_20120515_BRCA1_5.raw High NVQDAIADAEQR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 393 2.07 0.00 0 25 100 2 665.32336 1329.63945 0.04 28.74 1633 1633 MS2 14/22 Linfeng_20120515_BRCA1_7.raw High TAAENDFVTLK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 532 2.08 0.00 0 28 100 2 604.81287 1208.61846 2.20 31.40 2010 2010 MS2 10/20 Linfeng_20120514_rIgG_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 442 2.08 0.00 0 45 100 2 632.35022 1263.69316 -0.96 46.32 4619 4619 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 351 2.08 0.00 0 7 100 2 570.27490 1139.54253 2.06 33.44 2075 2075 MS2 11/16 Linfeng_20120515_BRCA1_7.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 531 2.09 0.00 0 19 100 2 597.31287 1193.61846 1.96 30.56 1925 1925 MS2 13/18 Linfeng_20120515_BRCA1_10.raw High NVQDAIADAEQR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 380 2.09 0.00 0 12 100 2 665.32410 1329.64092 1.14 29.71 1652 1652 MS2 15/22 Linfeng_20120515_BRCA1_2.raw High NVQDAIADAEQR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 404 2.09 0.00 0 2 100 2 665.32336 1329.63945 0.04 28.51 1626 1626 MS2 16/22 Linfeng_20120514_rIgG_6.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 458 2.09 0.00 0 39 100 2 632.35022 1263.69316 -0.96 45.94 4524 4524 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 380 2.10 0.00 0 35 100 2 570.27563 1139.54399 3.34 34.19 2179 2179 MS2 12/16 Linfeng_20120514_rIgG_4.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 370 2.10 0.00 0 14 100 2 570.27582 1139.54436 3.67 33.67 2154 2154 MS2 11/16 Linfeng_20120515_BRCA1_9.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 540 2.11 0.00 0 22 100 2 597.31305 1193.61882 2.26 30.89 1967 1967 MS2 11/18 Linfeng_20120515_BRCA1_10.raw High TAAENDFVTLK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 564 2.11 0.00 0 39 100 2 604.81305 1208.61882 2.50 32.64 1947 1947 MS2 10/20 Linfeng_20120515_BRCA1_4.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 334 2.12 0.00 0 55 100 2 570.27478 1139.54228 1.85 34.08 2425 2425 MS2 13/16 Linfeng_20120514_rIgG_3.raw High TAAENDFVTLK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 631 2.12 0.00 0 13 100 2 604.81183 1208.61638 0.48 30.33 1984 1984 MS2 9/20 Linfeng_20120514_rIgG_2.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 556 2.13 0.00 0 15 100 2 597.31329 1193.61931 2.67 30.95 1951 1951 MS2 13/18 Linfeng_20120514_rIgG_8.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 556 2.14 0.00 0 13 100 2 597.31287 1193.61846 1.96 30.38 1906 1906 MS2 13/18 Linfeng_20120515_BRCA1_10.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 549 2.14 0.00 0 13 100 2 597.31244 1193.61760 1.24 31.12 1807 1807 MS2 13/18 Linfeng_20120514_rIgG_7.raw High NVQDAIADAEQR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 400 2.16 0.00 0 16 100 2 665.32288 1329.63848 -0.70 28.53 1705 1705 MS2 15/22 Linfeng_20120515_BRCA1_10.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 378 2.16 0.00 0 7 100 2 570.27563 1139.54399 3.34 33.76 2190 2190 MS2 12/16 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 469 2.18 0.00 0 52 100 2 632.34998 1263.69267 -1.35 47.15 4212 4212 MS2 14/20 Linfeng_20120514_rIgG_9.raw High TAAENDFVTLK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 606 2.19 0.00 0 35 100 2 604.81226 1208.61724 1.19 31.92 2110 2110 MS2 11/20 Linfeng_20120514_rIgG_3.raw High NVQDAIADAEQR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 384 2.19 0.00 0 15 100 2 665.32355 1329.63982 0.31 28.70 1586 1586 MS2 11/22 Linfeng_20120515_BRCA1_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 449 2.19 0.00 0 51 100 2 632.34973 1263.69219 -1.74 45.90 4630 4630 MS2 17/20 Linfeng_20120515_BRCA1_5.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 531 2.19 0.00 0 18 100 2 597.31281 1193.61833 1.85 29.78 1846 1846 MS2 12/18 Linfeng_20120515_BRCA1_5.raw High TAAENDFVTLK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 543 2.20 0.00 0 12 100 2 604.81274 1208.61821 1.99 31.76 1891 1891 MS2 11/20 Linfeng_20120514_rIgG_4.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 332 2.21 0.00 0 5 100 2 570.27441 1139.54155 1.20 33.77 2093 2093 MS2 11/16 Linfeng_20120514_rIgG_7.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 330 2.21 0.00 0 31 100 2 570.27625 1139.54521 4.42 34.47 2207 2207 MS2 11/16 Linfeng_20120515_BRCA1_4.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 586 2.23 0.00 0 2 100 2 597.31201 1193.61675 0.52 29.89 1733 1733 MS2 12/18 Linfeng_20120515_BRCA1_9.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 363 2.23 0.00 0 9 100 2 570.27570 1139.54411 3.45 33.99 2149 2149 MS2 11/16 Linfeng_20120514_rIgG_4.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 520 2.24 0.00 0 3 100 2 597.31171 1193.61614 0.01 29.68 1659 1659 MS2 11/18 Linfeng_20120515_BRCA1_6.raw High NVQDAIADAEQR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 366 2.24 0.00 0 4 100 2 665.32355 1329.63982 0.31 28.93 1634 1634 MS2 16/22 Linfeng_20120514_rIgG_5.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 615 2.25 0.00 0 10 100 2 597.31152 1193.61577 -0.29 29.44 1687 1687 MS2 14/18 Linfeng_20120515_BRCA1_7.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 344 2.25 0.00 0 12 100 2 570.27521 1139.54314 2.60 33.84 1993 1993 MS2 13/16 Linfeng_20120515_BRCA1_2.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 337 2.26 0.00 0 11 100 2 570.27472 1139.54216 1.74 33.98 2122 2122 MS2 12/16 Linfeng_20120514_rIgG_7.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 477 2.27 0.00 0 41 100 2 632.34985 1263.69243 -1.54 46.04 4549 4549 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 361 2.27 0.00 0 9 100 2 570.27441 1139.54155 1.20 33.91 2110 2110 MS2 12/16 Linfeng_20120514_rIgG_7.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 373 2.28 0.00 0 21 100 2 570.27545 1139.54363 3.02 33.17 2250 2250 MS2 12/16 Linfeng_20120514_rIgG_1.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 560 2.28 0.00 0 6 100 2 597.31244 1193.61760 1.24 29.35 1788 1788 MS2 13/18 Linfeng_20120514_rIgG_9.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 551 2.29 0.00 0 15 100 2 597.31305 1193.61882 2.26 30.76 1921 1921 MS2 14/18 Linfeng_20120514_rIgG_8.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 591 2.29 0.00 0 6 100 2 597.31244 1193.61760 1.24 29.57 1876 1876 MS2 14/18 Linfeng_20120515_BRCA1_8.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 555 2.29 0.00 0 16 100 2 597.31305 1193.61882 2.26 31.33 1799 1799 MS2 14/18 Linfeng_20120515_BRCA1_3.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 381 2.30 0.00 0 18 100 2 570.27551 1139.54375 3.13 33.51 1955 1955 MS2 13/16 Linfeng_20120515_BRCA1_2.raw High NKLNDLEEALQQAK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 497 2.30 0.00 1 18 100 2 807.43097 1613.85466 3.26 46.69 4336 4336 MS2 16/26 Linfeng_20120514_rIgG_1.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 374 2.31 0.00 0 30 100 2 570.27570 1139.54411 3.45 34.36 2207 2207 MS2 12/16 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 458 2.32 0.00 0 54 100 2 632.34973 1263.69219 -1.74 46.58 4686 4686 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 335 2.34 0.00 0 10 100 2 570.27509 1139.54289 2.38 33.76 2378 2378 MS2 12/16 Linfeng_20120514_rIgG_3.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 575 2.34 0.00 0 19 100 2 597.31250 1193.61772 1.34 31.19 1820 1820 MS2 16/18 Linfeng_20120515_BRCA1_7.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 601 2.35 0.00 0 16 100 2 597.31207 1193.61687 0.63 28.82 1807 1807 MS2 14/18 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 2.36 0.00 0 37 100 2 632.35046 1263.69365 -0.58 46.86 3971 3971 MS2 16/20 Linfeng_20120514_rIgG_10.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 621 2.36 0.00 0 9 100 2 597.31177 1193.61626 0.11 29.32 1663 1663 MS2 13/18 Linfeng_20120514_rIgG_7.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 492 2.37 0.00 0 60 100 2 632.35114 1263.69499 0.48 46.73 4431 4431 MS2 14/20 Linfeng_20120515_BRCA1_10.raw High TAAENDFVTLK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 571 2.37 0.00 0 8 100 2 604.81311 1208.61894 2.60 31.78 1846 1846 MS2 13/20 Linfeng_20120515_BRCA1_4.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 590 2.38 0.00 0 12 100 2 597.31226 1193.61724 0.93 29.25 1690 1690 MS2 14/18 Linfeng_20120514_rIgG_6.raw High NKLNDLEEALQQAK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 561 2.38 0.00 1 20 100 2 807.42877 1613.85027 0.54 46.60 4066 4066 MS2 16/26 Linfeng_20120515_BRCA1_1.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 565 2.38 0.00 0 6 100 2 597.31250 1193.61772 1.34 30.45 1764 1764 MS2 14/18 Linfeng_20120514_rIgG_5.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 544 2.39 0.00 0 26 100 2 597.31366 1193.62004 3.29 31.03 2079 2079 MS2 15/18 Linfeng_20120515_BRCA1_8.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 618 2.39 0.00 0 2 100 2 738.39685 1475.78642 0.75 29.40 1632 1632 MS2 18/22 Linfeng_20120515_BRCA1_2.raw High TAAENDFVTLK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 575 2.39 0.00 0 21 100 2 604.81232 1208.61736 1.29 32.02 1889 1889 MS2 12/20 Linfeng_20120514_rIgG_7.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 470 2.39 0.00 0 30 100 2 632.34888 1263.69048 -3.09 46.46 4770 4770 MS2 17/20 Linfeng_20120515_BRCA1_5.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 581 2.39 0.00 0 17 100 2 597.31335 1193.61943 2.77 30.82 1958 1958 MS2 12/18 Linfeng_20120515_BRCA1_10.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 608 2.40 0.00 0 3 100 2 738.39734 1475.78740 1.41 27.50 1543 1543 MS2 15/22 Linfeng_20120515_BRCA1_9.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 335 2.41 0.00 0 25 100 2 570.27521 1139.54314 2.60 33.07 2234 2234 MS2 12/16 Linfeng_20120514_rIgG_1.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 497 2.41 0.00 0 7 100 2 597.31305 1193.61882 2.26 31.42 1764 1764 MS2 13/18 Linfeng_20120515_BRCA1_2.raw High NVQDAIADAEQR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 371 2.41 0.00 0 14 100 2 665.32275 1329.63823 -0.88 29.02 1616 1616 MS2 15/22 Linfeng_20120515_BRCA1_6.raw High TAAENDFVTLK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 602 2.41 0.00 0 33 100 2 604.81189 1208.61650 0.58 31.33 2106 2106 MS2 13/20 Linfeng_20120514_rIgG_2.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 607 2.41 0.00 0 5 100 2 738.39606 1475.78484 -0.33 27.41 1507 1507 MS2 15/22 Linfeng_20120515_BRCA1_3.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 655 2.42 0.00 0 2 100 2 738.39600 1475.78472 -0.41 27.01 1501 1501 MS2 17/22 Linfeng_20120515_BRCA1_1.raw High NVQDAIADAEQR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 365 2.43 0.00 0 4 100 2 665.32385 1329.64043 0.77 28.40 1617 1617 MS2 17/22 Linfeng_20120514_rIgG_4.raw High LNDLEEALQQAK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 555 2.43 0.00 0 9 100 2 686.36035 1371.71343 1.40 41.17 3396 3396 MS2 15/22 Linfeng_20120514_rIgG_8.raw High LNDLEEALQQAK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 563 2.43 0.00 0 12 100 2 686.35950 1371.71172 0.16 42.30 3006 3006 MS2 15/22 Linfeng_20120515_BRCA1_4.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 543 2.43 0.00 0 18 100 2 597.31311 1193.61894 2.36 31.81 1911 1911 MS2 13/18 Linfeng_20120515_BRCA1_9.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 594 2.43 0.00 0 7 100 2 597.31195 1193.61662 0.42 29.34 1646 1646 MS2 12/18 Linfeng_20120515_BRCA1_4.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 379 2.43 0.00 0 29 100 2 570.27570 1139.54411 3.45 33.37 2246 2246 MS2 10/16 Linfeng_20120514_rIgG_10.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 561 2.43 0.00 0 7 100 2 597.31262 1193.61797 1.55 29.77 1908 1908 MS2 13/18 Linfeng_20120515_BRCA1_8.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 337 2.44 0.00 0 14 100 2 570.27527 1139.54326 2.70 33.26 2110 2110 MS2 12/16 Linfeng_20120515_BRCA1_1.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 340 2.45 0.00 0 13 100 2 570.27527 1139.54326 2.70 33.37 2126 2126 MS2 13/16 Linfeng_20120515_BRCA1_1.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 370 2.45 0.00 0 8 100 2 570.27411 1139.54094 0.67 33.85 2104 2104 MS2 13/16 Linfeng_20120514_rIgG_7.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 557 2.45 0.00 0 3 100 2 597.31256 1193.61785 1.44 29.85 1918 1918 MS2 15/18 Linfeng_20120515_BRCA1_8.raw High TAAENDFVTLK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 547 2.46 0.00 0 25 100 2 604.81250 1208.61772 1.59 31.67 2090 2090 MS2 13/20 Linfeng_20120514_rIgG_3.raw High TAAENDFVTLK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 555 2.46 0.00 0 9 100 2 604.81287 1208.61846 2.20 30.81 1950 1950 MS2 15/20 Linfeng_20120514_rIgG_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 473 2.46 0.00 0 46 100 2 632.35022 1263.69316 -0.96 46.78 3951 3951 MS2 17/20 Linfeng_20120514_rIgG_10.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 531 2.48 0.00 0 6 100 2 597.31287 1193.61846 1.96 30.78 1844 1844 MS2 15/18 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 464 2.48 0.00 0 36 100 2 632.35065 1263.69402 -0.29 47.09 3873 3873 MS2 17/20 Linfeng_20120515_BRCA1_7.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 594 2.48 0.00 0 10 100 2 597.31348 1193.61968 2.98 31.65 1894 1894 MS2 14/18 Linfeng_20120514_rIgG_5.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 621 2.49 0.00 0 6 100 2 597.31232 1193.61736 1.04 29.21 1687 1687 MS2 14/18 Linfeng_20120514_rIgG_6.raw High NVQDAIADAEQR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 374 2.50 0.00 0 19 100 2 665.32324 1329.63921 -0.15 28.79 1744 1744 MS2 15/22 Linfeng_20120514_rIgG_8.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 541 2.50 0.00 0 27 100 2 597.31299 1193.61870 2.16 30.82 1966 1966 MS2 12/18 Linfeng_20120515_BRCA1_5.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 335 2.50 0.00 0 14 100 2 570.27478 1139.54228 1.85 33.58 2072 2072 MS2 13/16 Linfeng_20120514_rIgG_7.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 528 2.50 0.00 0 13 100 2 597.31299 1193.61870 2.16 31.41 1862 1862 MS2 14/18 Linfeng_20120514_rIgG_4.raw High VDLLNQEIEFLK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 497 2.50 0.00 0 50 100 2 730.90448 1460.80168 1.43 49.61 4628 4628 MS2 12/22 Linfeng_20120515_BRCA1_4.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 536 2.50 0.00 0 6 100 2 597.31311 1193.61894 2.36 30.82 2047 2047 MS2 14/18 Linfeng_20120515_BRCA1_8.raw High YLDGLTAER Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 517 2.50 0.00 0 13 100 2 519.26721 1037.52715 0.87 27.32 1604 1604 MS2 14/16 Linfeng_20120514_rIgG_3.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 584 2.51 0.00 0 6 100 2 597.31342 1193.61955 2.88 30.84 1850 1850 MS2 15/18 Linfeng_20120515_BRCA1_1.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 521 2.51 0.00 0 11 100 2 597.31281 1193.61833 1.85 30.71 1923 1923 MS2 14/18 Linfeng_20120514_rIgG_9.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 339 2.51 0.00 0 8 100 2 570.27472 1139.54216 1.74 33.67 2176 2176 MS2 12/16 Linfeng_20120515_BRCA1_1.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 616 2.52 0.00 0 7 100 2 738.39679 1475.78630 0.66 29.43 1640 1640 MS2 14/22 Linfeng_20120515_BRCA1_3.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 341 2.52 0.00 0 27 100 2 570.27484 1139.54241 1.95 34.26 2270 2270 MS2 11/16 Linfeng_20120515_BRCA1_1.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 510 2.52 0.00 0 2 100 2 597.31281 1193.61833 1.85 29.94 1928 1928 MS2 13/18 Linfeng_20120515_BRCA1_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 472 2.53 0.00 0 15 68 2 632.35034 1263.69341 -0.77 48.85 4961 4961 MS2 18/20 Linfeng_20120514_rIgG_8.raw High TAAENDFVTLK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 544 2.53 0.00 0 11 100 2 604.81293 1208.61858 2.30 31.45 1916 1916 MS2 13/20 Linfeng_20120515_BRCA1_1.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 361 2.53 0.00 0 11 100 2 570.27411 1139.54094 0.67 33.50 2500 2500 MS2 12/16 Linfeng_20120515_BRCA1_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 484 2.54 0.00 0 36 100 2 632.35083 1263.69438 0.00 47.21 4177 4177 MS2 15/20 Linfeng_20120514_rIgG_3.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 537 2.54 0.00 0 14 100 2 597.31274 1193.61821 1.75 29.87 1853 1853 MS2 15/18 Linfeng_20120515_BRCA1_5.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 366 2.54 0.00 0 18 100 2 570.27539 1139.54350 2.92 33.87 2133 2133 MS2 13/16 Linfeng_20120514_rIgG_4.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 528 2.55 0.00 0 20 100 2 597.31287 1193.61846 1.96 31.71 1811 1811 MS2 15/18 Linfeng_20120515_BRCA1_6.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 560 2.55 0.00 0 11 100 2 597.31250 1193.61772 1.34 30.40 1890 1890 MS2 14/18 Linfeng_20120514_rIgG_9.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 503 2.55 0.00 0 8 100 2 919.96240 1838.91753 1.64 55.49 5800 5800 MS2 14/42 Linfeng_20120514_rIgG_2.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 552 2.55 0.00 0 9 100 2 597.31232 1193.61736 1.04 29.29 1696 1696 MS2 14/18 Linfeng_20120514_rIgG_6.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 554 2.56 0.00 0 16 100 2 738.39899 1475.79070 3.64 38.41 2975 2975 MS2 14/22 Linfeng_20120514_rIgG_1.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 582 2.56 0.00 0 4 100 2 597.31219 1193.61711 0.83 29.91 1716 1716 MS2 16/18 Linfeng_20120514_rIgG_5.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 579 2.56 0.00 0 9 100 2 597.31384 1193.62041 3.59 30.71 2031 2031 MS2 14/18 Linfeng_20120515_BRCA1_8.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 567 2.57 0.00 0 5 100 2 597.31238 1193.61748 1.14 29.17 1684 1684 MS2 15/18 Linfeng_20120514_rIgG_6.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 575 2.57 0.00 0 43 100 2 665.36664 1329.72600 -0.07 49.55 4833 4833 MS2 16/22 Linfeng_20120515_BRCA1_1.raw High NVQDAIADAEQR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 387 2.58 0.00 0 10 100 2 665.32367 1329.64006 0.50 28.61 1702 1702 MS2 17/22 Linfeng_20120514_rIgG_10.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 611 2.58 0.00 0 8 100 2 738.39771 1475.78813 1.91 27.09 1565 1565 MS2 15/22 Linfeng_20120514_rIgG_9.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 353 2.59 0.00 0 12 100 2 570.27417 1139.54106 0.77 33.80 2572 2572 MS2 13/16 Linfeng_20120515_BRCA1_8.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 350 2.59 0.00 0 26 100 2 570.27527 1139.54326 2.70 33.04 2229 2229 MS2 13/16 Linfeng_20120514_rIgG_1.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 531 2.59 0.00 0 12 100 2 597.31293 1193.61858 2.06 30.63 1910 1910 MS2 13/18 Linfeng_20120514_rIgG_9.raw High mSGDLSSNVTVSVTSSTISSNVASK Unambiguous 1 1 IPI00021304.1 M1(Oxidation) CID 1.0000 0.0000 1 1 498 2.59 0.00 0 4 100 3 825.40411 2474.19779 2.03 36.68 2781 2781 MS2 27/96 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 430 2.59 0.00 0 31 100 2 632.35077 1263.69426 -0.09 47.20 3985 3985 MS2 17/20 Linfeng_20120515_BRCA1_4.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 561 2.60 0.00 0 2 100 2 597.31232 1193.61736 1.04 29.98 1849 1849 MS2 14/18 Linfeng_20120515_BRCA1_10.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 309 2.60 0.00 0 18 100 2 570.27362 1139.53996 -0.19 33.39 2199 2199 MS2 12/16 Linfeng_20120514_rIgG_6.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 449 2.61 0.00 0 37 100 2 632.34973 1263.69219 -1.74 47.17 4828 4828 MS2 16/20 Linfeng_20120515_BRCA1_8.raw High LNDLEEALQQAK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 548 2.61 0.00 0 2 100 2 686.36194 1371.71660 3.72 42.10 3376 3376 MS2 17/22 Linfeng_20120514_rIgG_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 453 2.61 0.00 0 63 100 2 632.35052 1263.69377 -0.48 47.45 4110 4110 MS2 16/20 Linfeng_20120514_rIgG_10.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 514 2.61 0.00 0 4 1 2 665.36542 1329.72356 -1.90 49.02 5023 5023 MS2 14/22 Linfeng_20120515_BRCA1_10.raw High NVQDAIADAEQR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 380 2.62 0.00 0 11 100 2 665.32318 1329.63909 -0.24 28.64 1585 1585 MS2 16/22 Linfeng_20120515_BRCA1_3.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 579 2.63 0.00 0 19 100 2 597.31335 1193.61943 2.77 30.91 1945 1945 MS2 16/18 Linfeng_20120514_rIgG_8.raw High LNDLEEALQQAK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 557 2.64 0.00 0 13 100 2 686.36023 1371.71318 1.23 41.16 2947 2947 MS2 15/22 Linfeng_20120514_rIgG_4.raw High NVQDAIADAEQR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 383 2.65 0.00 0 19 100 2 665.32385 1329.64043 0.77 29.32 1869 1869 MS2 15/22 Linfeng_20120514_rIgG_2.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 553 2.65 0.00 0 10 100 2 597.31311 1193.61894 2.36 30.68 1793 1793 MS2 14/18 Linfeng_20120514_rIgG_5.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 536 2.65 0.00 0 3 100 2 597.31293 1193.61858 2.06 30.33 1981 1981 MS2 15/18 Linfeng_20120515_BRCA1_8.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 317 2.66 0.00 0 21 100 2 570.27484 1139.54241 1.95 33.11 2240 2240 MS2 12/16 Linfeng_20120514_rIgG_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 506 2.66 0.00 0 46 100 2 632.35114 1263.69499 0.48 47.52 4063 4063 MS2 17/20 Linfeng_20120515_BRCA1_4.raw High LNDLEEALQQAK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 492 2.66 0.00 0 12 100 2 686.35986 1371.71245 0.69 41.42 2851 2851 MS2 16/22 Linfeng_20120515_BRCA1_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 476 2.66 0.00 0 29 79 2 632.35144 1263.69560 0.97 48.87 4958 4958 MS2 18/20 Linfeng_20120514_rIgG_2.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 530 2.67 0.00 0 19 100 2 597.31299 1193.61870 2.16 31.04 1963 1963 MS2 16/18 Linfeng_20120514_rIgG_8.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 648 2.67 0.00 0 10 100 2 738.39551 1475.78374 -1.07 26.61 1507 1507 MS2 13/22 Linfeng_20120514_rIgG_1.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 573 2.67 0.00 0 4 100 2 597.31250 1193.61772 1.34 30.76 1815 1815 MS2 13/18 Linfeng_20120515_BRCA1_9.raw High TAAENDFVTLK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 568 2.67 0.00 0 16 100 2 604.81238 1208.61748 1.39 31.97 2097 2097 MS2 12/20 Linfeng_20120514_rIgG_1.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 572 2.67 0.00 0 5 100 2 597.31250 1193.61772 1.34 30.80 1818 1818 MS2 16/18 Linfeng_20120515_BRCA1_9.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 592 2.68 0.00 0 6 100 2 597.31213 1193.61699 0.73 30.45 1755 1755 MS2 14/18 Linfeng_20120515_BRCA1_7.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 339 2.68 0.00 0 18 100 2 570.27527 1139.54326 2.70 33.75 2065 2065 MS2 12/16 Linfeng_20120515_BRCA1_3.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 599 2.68 0.00 0 4 100 2 597.31213 1193.61699 0.73 29.24 1658 1658 MS2 15/18 Linfeng_20120514_rIgG_5.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 609 2.69 0.00 0 7 100 2 597.31201 1193.61675 0.52 30.35 1884 1884 MS2 16/18 Linfeng_20120514_rIgG_9.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 573 2.69 0.00 0 1 100 2 597.31238 1193.61748 1.14 30.40 1695 1695 MS2 16/18 Linfeng_20120515_BRCA1_2.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 565 2.69 0.00 0 8 100 2 597.31329 1193.61931 2.67 30.48 1999 1999 MS2 13/18 Linfeng_20120515_BRCA1_8.raw High NVQDAIADAEQR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 379 2.69 0.00 0 0 100 2 665.32306 1329.63884 -0.42 28.86 1631 1631 MS2 15/22 Linfeng_20120514_rIgG_7.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 634 2.70 0.00 0 10 100 2 597.31201 1193.61675 0.52 30.35 1987 1987 MS2 15/18 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 473 2.70 0.00 0 30 100 2 632.35040 1263.69353 -0.67 47.22 4210 4210 MS2 16/20 Linfeng_20120515_BRCA1_1.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 541 2.70 0.00 0 15 100 2 597.31329 1193.61931 2.67 30.86 2000 2000 MS2 13/18 Linfeng_20120514_rIgG_3.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 581 2.70 0.00 0 10 100 2 597.31219 1193.61711 0.83 29.39 1631 1631 MS2 14/18 Linfeng_20120515_BRCA1_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 492 2.70 0.00 0 40 100 2 632.35089 1263.69451 0.10 46.88 4113 4113 MS2 14/20 Linfeng_20120514_rIgG_3.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 571 2.70 0.00 0 5 100 2 738.39880 1475.79033 3.39 27.09 1553 1553 MS2 16/22 Linfeng_20120515_BRCA1_10.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 336 2.71 0.00 0 13 100 2 570.27496 1139.54265 2.17 33.25 2302 2302 MS2 13/16 Linfeng_20120514_rIgG_3.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 468 2.72 0.00 0 8 100 2 919.96130 1838.91533 0.45 55.47 5193 5193 MS2 20/42 Linfeng_20120514_rIgG_3.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 630 2.72 0.00 0 16 100 2 738.39728 1475.78728 1.33 30.01 1745 1745 MS2 14/22 Linfeng_20120514_rIgG_4.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 584 2.73 0.00 0 2 100 2 597.31219 1193.61711 0.83 29.80 1724 1724 MS2 14/18 Linfeng_20120515_BRCA1_9.raw High TAAENDFVTLK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 535 2.73 0.00 0 8 100 2 604.81262 1208.61797 1.79 30.63 1934 1934 MS2 15/20 Linfeng_20120514_rIgG_1.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 521 2.73 0.00 0 24 100 2 597.31293 1193.61858 2.06 30.67 1939 1939 MS2 15/18 Linfeng_20120515_BRCA1_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 483 2.75 0.00 0 26 100 2 632.35126 1263.69524 0.68 45.46 4168 4168 MS2 18/20 Linfeng_20120514_rIgG_2.raw High LNDLEEALQQAK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 566 2.75 0.00 0 12 100 2 686.36060 1371.71391 1.76 41.08 3292 3292 MS2 15/22 Linfeng_20120514_rIgG_6.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 618 2.75 0.00 0 8 100 2 738.39740 1475.78752 1.49 34.57 2501 2501 MS2 15/22 Linfeng_20120514_rIgG_3.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 618 2.75 0.00 0 5 100 2 738.39581 1475.78435 -0.66 27.42 1643 1643 MS2 13/22 Linfeng_20120515_BRCA1_5.raw High NKLNDLEEALQQAK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 482 2.75 0.00 1 17 100 2 807.42999 1613.85271 2.05 46.13 4202 4202 MS2 17/26 Linfeng_20120514_rIgG_1.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 579 2.76 0.00 0 8 100 2 597.31226 1193.61724 0.93 30.05 1680 1680 MS2 13/18 Linfeng_20120515_BRCA1_3.raw High TAAENDFVTLK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 562 2.76 0.00 0 9 100 2 604.81311 1208.61894 2.60 30.96 1967 1967 MS2 15/20 Linfeng_20120514_rIgG_1.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 512 2.76 0.00 0 10 100 2 597.31293 1193.61858 2.06 30.29 1895 1895 MS2 15/18 Linfeng_20120515_BRCA1_10.raw High VDLLNQEIEFLK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 524 2.76 0.00 0 1 3 2 730.90405 1460.80083 0.85 49.02 4376 4376 MS2 13/22 Linfeng_20120515_BRCA1_7.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 666 2.77 0.00 0 5 100 2 738.39569 1475.78411 -0.82 27.21 1509 1509 MS2 18/22 Linfeng_20120515_BRCA1_7.raw High LNDLEEALQQAK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 541 2.77 0.00 0 2 100 2 686.35950 1371.71172 0.16 41.29 2900 2900 MS2 13/22 Linfeng_20120514_rIgG_7.raw High VDLLNQEIEFLK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 509 2.77 0.00 0 56 100 2 730.90448 1460.80168 1.43 49.33 5107 5107 MS2 12/22 Linfeng_20120514_rIgG_2.raw High NKLNDLEEALQQAK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 538 2.77 0.00 1 7 100 2 807.42914 1613.85100 0.99 46.89 3924 3924 MS2 15/26 Linfeng_20120514_rIgG_4.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 366 2.77 0.00 0 16 100 2 570.27380 1139.54033 0.13 33.33 2248 2248 MS2 13/16 Linfeng_20120514_rIgG_8.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 596 2.77 0.00 0 2 100 2 597.31232 1193.61736 1.04 29.40 1858 1858 MS2 16/18 Linfeng_20120515_BRCA1_8.raw High NVQDAIADAEQR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 383 2.78 0.00 0 5 100 2 665.32361 1329.63994 0.41 29.33 1701 1701 MS2 19/22 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 447 2.78 0.00 0 48 100 2 632.35089 1263.69451 0.10 47.36 4023 4023 MS2 16/20 Linfeng_20120515_BRCA1_4.raw High LNDLEEALQQAK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 544 2.78 0.00 0 15 100 2 686.35968 1371.71208 0.42 41.27 3708 3708 MS2 18/22 Linfeng_20120515_BRCA1_5.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 538 2.78 0.00 0 4 100 2 597.31250 1193.61772 1.34 30.01 1724 1724 MS2 14/18 Linfeng_20120514_rIgG_5.raw High NKLNDLEEALQQAK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 503 2.78 0.00 1 0 100 2 807.42908 1613.85088 0.91 46.74 3792 3792 MS2 16/26 Linfeng_20120515_BRCA1_7.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 546 2.79 0.00 0 25 100 2 597.31317 1193.61907 2.47 30.73 1947 1947 MS2 14/18 Linfeng_20120515_BRCA1_10.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 329 2.79 0.00 0 10 100 2 570.27484 1139.54241 1.95 33.62 2166 2166 MS2 13/16 Linfeng_20120515_BRCA1_1.raw High VLYDAEISQIHQSVTDTNVILSMDNSR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 498 2.79 0.00 0 0 12 3 1016.83417 3048.48795 -2.11 48.89 4470 4470 MS2 23/104 Linfeng_20120514_rIgG_10.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 608 2.80 0.00 0 33 100 2 738.39673 1475.78618 0.58 29.88 1686 1686 MS2 17/22 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 463 2.80 0.00 0 31 100 2 632.35107 1263.69487 0.39 46.86 3905 3905 MS2 17/20 Linfeng_20120515_BRCA1_4.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 627 2.81 0.00 0 0 100 2 738.39606 1475.78484 -0.33 27.26 1501 1501 MS2 17/22 Linfeng_20120515_BRCA1_4.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 521 2.82 0.00 0 4 100 2 597.31293 1193.61858 2.06 30.30 1976 1976 MS2 14/18 Linfeng_20120515_BRCA1_8.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 535 2.82 0.00 0 3 100 2 597.31256 1193.61785 1.44 30.15 1839 1839 MS2 14/18 Linfeng_20120514_rIgG_10.raw High LNDLEEALQQAK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 568 2.83 0.00 0 6 100 2 686.35931 1371.71135 -0.11 41.29 2925 2925 MS2 13/22 Linfeng_20120515_BRCA1_4.raw High LNDLEEALQQAK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 532 2.83 0.00 0 19 100 2 686.36139 1371.71550 2.92 40.95 3494 3494 MS2 13/22 Linfeng_20120514_rIgG_2.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 641 2.83 0.00 0 10 100 2 738.39642 1475.78557 0.17 35.84 2793 2793 MS2 16/22 Linfeng_20120514_rIgG_2.raw High LNDLEEALQQAK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 559 2.84 0.00 0 16 100 2 686.36224 1371.71721 4.16 40.89 3239 3239 MS2 14/22 Linfeng_20120514_rIgG_1.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 367 2.85 0.00 0 6 100 2 570.27539 1139.54350 2.92 33.43 2136 2136 MS2 13/16 Linfeng_20120515_BRCA1_1.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 665 2.85 0.00 0 49 100 2 738.39667 1475.78606 0.50 29.99 1852 1852 MS2 16/22 Linfeng_20120514_rIgG_1.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 537 2.85 0.00 0 13 100 2 597.31287 1193.61846 1.96 30.81 1930 1930 MS2 15/18 Linfeng_20120514_rIgG_8.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 602 2.86 0.00 0 8 100 2 597.31226 1193.61724 0.93 29.19 1679 1679 MS2 15/18 Linfeng_20120514_rIgG_4.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 598 2.86 0.00 0 7 100 2 597.31244 1193.61760 1.24 30.68 1724 1724 MS2 14/18 Linfeng_20120515_BRCA1_6.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 563 2.86 0.00 0 12 100 2 597.31244 1193.61760 1.24 29.33 1789 1789 MS2 13/18 Linfeng_20120514_rIgG_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 488 2.87 0.00 0 81 100 2 632.35071 1263.69414 -0.19 46.97 4488 4488 MS2 16/20 Linfeng_20120515_BRCA1_10.raw High LNDLEEALQQAK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 529 2.87 0.00 0 4 100 2 686.36005 1371.71282 0.96 41.95 3613 3613 MS2 17/22 Linfeng_20120514_rIgG_2.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 646 2.87 0.00 0 2 100 2 738.39557 1475.78386 -0.99 27.46 1518 1518 MS2 17/22 Linfeng_20120515_BRCA1_6.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 448 2.87 0.00 0 36 100 2 632.35059 1263.69390 -0.38 46.91 4136 4136 MS2 16/20 Linfeng_20120515_BRCA1_1.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 447 2.87 0.00 0 61 100 2 919.95972 1838.91216 -1.28 44.13 3727 3727 MS2 19/42 Linfeng_20120514_rIgG_1.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 535 2.87 0.00 0 8 100 2 597.31305 1193.61882 2.26 30.91 1765 1765 MS2 15/18 Linfeng_20120515_BRCA1_4.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 595 2.87 0.00 0 7 100 2 597.31171 1193.61614 0.01 29.14 1684 1684 MS2 16/18 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 451 2.87 0.00 0 44 100 2 632.35126 1263.69524 0.68 46.57 3752 3752 MS2 16/20 Linfeng_20120515_BRCA1_7.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 470 2.88 0.00 0 38 100 2 632.35089 1263.69451 0.10 47.03 4139 4139 MS2 16/20 Linfeng_20120514_rIgG_3.raw High NVQDAIADAEQR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 377 2.88 0.00 0 5 100 2 665.32355 1329.63982 0.31 29.41 1652 1652 MS2 16/22 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 459 2.88 0.00 0 53 100 2 632.35059 1263.69390 -0.38 46.42 3866 3866 MS2 17/20 Linfeng_20120514_rIgG_10.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 581 2.88 0.00 0 2 100 2 597.31226 1193.61724 0.93 29.92 1756 1756 MS2 15/18 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 480 2.88 0.00 0 48 100 2 632.35101 1263.69475 0.29 47.36 4243 4243 MS2 17/20 Linfeng_20120515_BRCA1_1.raw High NVQDAIADAEQR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 385 2.88 0.00 0 2 100 2 665.32385 1329.64043 0.77 29.53 1718 1718 MS2 18/22 Linfeng_20120514_rIgG_6.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 496 2.89 0.00 0 17 100 2 597.31287 1193.61846 1.96 30.50 1919 1919 MS2 13/18 Linfeng_20120515_BRCA1_10.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 564 2.90 0.00 0 10 100 2 597.31305 1193.61882 2.26 31.01 1773 1773 MS2 16/18 Linfeng_20120515_BRCA1_4.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 646 2.90 0.00 0 0 100 2 738.39630 1475.78533 0.00 27.37 1499 1499 MS2 15/22 Linfeng_20120515_BRCA1_2.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 566 2.91 0.00 0 2 100 2 597.31244 1193.61760 1.24 30.03 1768 1768 MS2 16/18 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 462 2.91 0.00 0 45 100 2 632.35052 1263.69377 -0.48 47.07 4019 4019 MS2 16/20 Linfeng_20120514_rIgG_10.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 582 2.91 0.00 0 2 100 2 597.31238 1193.61748 1.14 29.62 1690 1690 MS2 15/18 Linfeng_20120514_rIgG_5.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 476 2.92 0.00 0 40 100 2 632.35077 1263.69426 -0.09 46.82 3907 3907 MS2 17/20 Linfeng_20120514_rIgG_4.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 363 2.92 0.00 0 6 100 2 570.27539 1139.54350 2.92 33.56 2156 2156 MS2 13/16 Linfeng_20120515_BRCA1_1.raw High VLYDAEISQIHQSVTDTNVILSmDNSR Unambiguous 1 1 IPI00021304.1 M23(Oxidation) CID 1.0000 0.0000 1 1 471 2.93 0.00 0 7 100 3 1022.16907 3064.49265 1.10 48.72 4506 4506 MS2 27/104 Linfeng_20120514_rIgG_5.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 486 2.94 0.00 0 40 100 2 632.35040 1263.69353 -0.67 47.44 4228 4228 MS2 17/20 Linfeng_20120514_rIgG_3.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 601 2.95 0.00 0 6 100 2 738.39722 1475.78716 1.24 38.37 3161 3161 MS2 10/22 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 499 2.95 0.00 0 58 100 2 632.35107 1263.69487 0.39 47.47 4601 4601 MS2 15/20 Linfeng_20120514_rIgG_2.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 620 2.95 0.00 0 40 100 2 738.39703 1475.78679 1.00 30.05 1770 1770 MS2 16/22 Linfeng_20120515_BRCA1_1.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 564 2.95 0.00 0 8 100 2 597.31268 1193.61809 1.65 31.15 1944 1944 MS2 15/18 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 2.95 0.00 0 15 75 2 632.34955 1263.69182 -2.03 48.84 4404 4404 MS2 18/20 Linfeng_20120514_rIgG_4.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 585 2.95 0.00 0 3 100 2 597.31219 1193.61711 0.83 29.95 1739 1739 MS2 15/18 Linfeng_20120515_BRCA1_9.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 461 2.95 0.00 0 23 100 2 632.35034 1263.69341 -0.77 48.82 4535 4535 MS2 18/20 Linfeng_20120514_rIgG_5.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 559 2.95 0.00 0 14 100 2 597.31244 1193.61760 1.24 30.71 1762 1762 MS2 15/18 Linfeng_20120514_rIgG_7.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 557 2.96 0.00 0 8 100 2 597.31305 1193.61882 2.26 30.52 1893 1893 MS2 14/18 Linfeng_20120514_rIgG_8.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 598 2.96 0.00 0 5 100 2 597.31195 1193.61662 0.42 29.80 1826 1826 MS2 14/18 Linfeng_20120515_BRCA1_10.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 550 2.97 0.00 0 1 100 2 597.31238 1193.61748 1.14 29.73 1701 1701 MS2 14/18 Linfeng_20120514_rIgG_5.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 465 2.97 0.00 0 40 100 2 919.95697 1838.90666 -4.27 44.35 3536 3536 MS2 20/42 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 459 2.98 0.00 0 37 100 2 632.35046 1263.69365 -0.58 47.08 4177 4177 MS2 18/20 Linfeng_20120515_BRCA1_1.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 536 2.98 0.00 0 6 100 2 597.31274 1193.61821 1.75 30.24 1764 1764 MS2 15/18 Linfeng_20120514_rIgG_4.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 587 2.99 0.00 0 4 100 2 597.31238 1193.61748 1.14 29.97 1846 1846 MS2 14/18 Linfeng_20120514_rIgG_9.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 492 2.99 0.00 0 57 100 2 632.35083 1263.69438 0.00 47.56 4082 4082 MS2 17/20 Linfeng_20120514_rIgG_4.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 549 2.99 0.00 0 5 100 2 597.31256 1193.61785 1.44 30.07 1749 1749 MS2 14/18 Linfeng_20120514_rIgG_4.raw High TAAENDFVTLK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 559 2.99 0.00 0 10 100 2 604.81281 1208.61833 2.10 31.32 2052 2052 MS2 14/20 Linfeng_20120514_rIgG_3.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 619 2.99 0.00 0 4 100 2 738.39636 1475.78545 0.09 26.97 1500 1500 MS2 15/22 Linfeng_20120514_rIgG_4.raw High LNDLEEALQQAK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 589 3.00 0.00 0 5 100 2 686.36096 1371.71465 2.29 41.22 3216 3216 MS2 15/22 Linfeng_20120514_rIgG_5.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 576 3.00 0.00 0 19 100 2 597.31342 1193.61955 2.88 30.82 1996 1996 MS2 15/18 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 477 3.00 0.00 0 41 100 2 632.35059 1263.69390 -0.38 47.37 4037 4037 MS2 18/20 Linfeng_20120514_rIgG_4.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 656 3.00 0.00 0 6 100 2 738.39569 1475.78411 -0.82 26.99 1509 1509 MS2 17/22 Linfeng_20120514_rIgG_6.raw High VDLLNQEIEFLK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 496 3.00 0.00 0 13 100 2 730.90503 1460.80278 2.18 49.92 5153 5153 MS2 15/22 Linfeng_20120514_rIgG_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 449 3.01 0.00 0 34 100 2 632.35071 1263.69414 -0.19 47.28 4194 4194 MS2 15/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 3.01 0.00 0 25 100 2 632.35138 1263.69548 0.87 46.23 3756 3756 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 589 3.01 0.00 0 2 100 2 597.31171 1193.61614 0.01 29.24 1692 1692 MS2 14/18 Linfeng_20120515_BRCA1_1.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 535 3.01 0.00 0 11 100 2 597.31323 1193.61919 2.57 31.18 1849 1849 MS2 14/18 Linfeng_20120514_rIgG_5.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 559 3.02 0.00 0 10 100 2 597.31213 1193.61699 0.73 29.24 1638 1638 MS2 15/18 Linfeng_20120515_BRCA1_4.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 559 3.02 0.00 0 12 100 2 597.31317 1193.61907 2.47 30.42 1910 1910 MS2 17/18 Linfeng_20120515_BRCA1_10.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 625 3.02 0.00 0 34 100 2 738.39697 1475.78667 0.91 29.98 1850 1850 MS2 17/22 Linfeng_20120515_BRCA1_10.raw High LNDLEEALQQAK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 545 3.03 0.00 0 0 100 2 686.35944 1371.71160 0.07 41.60 3138 3138 MS2 17/22 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 446 3.03 0.00 0 31 100 2 632.35193 1263.69658 1.74 46.21 4314 4314 MS2 17/20 Linfeng_20120514_rIgG_2.raw High VDLLNQEIEFLK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 543 3.03 0.00 0 7 80 2 730.90271 1460.79814 -0.99 50.19 5272 5272 MS2 16/22 Linfeng_20120514_rIgG_2.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 577 3.04 0.00 0 11 100 2 597.31323 1193.61919 2.57 30.26 1969 1969 MS2 16/18 Linfeng_20120515_BRCA1_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 474 3.04 0.00 0 28 100 2 632.35083 1263.69438 0.00 45.97 3839 3839 MS2 17/20 Linfeng_20120514_rIgG_5.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 571 3.05 0.00 0 4 100 2 597.31244 1193.61760 1.24 29.52 1682 1682 MS2 15/18 Linfeng_20120514_rIgG_5.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 413 3.05 0.00 0 28 100 2 632.35193 1263.69658 1.74 45.62 4198 4198 MS2 17/20 Linfeng_20120514_rIgG_2.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 527 3.05 0.00 0 5 100 2 597.31293 1193.61858 2.06 30.14 1923 1923 MS2 16/18 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 441 3.06 0.00 0 27 100 2 632.35101 1263.69475 0.29 45.93 3957 3957 MS2 17/20 Linfeng_20120514_rIgG_3.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 653 3.06 0.00 0 6 100 2 738.39630 1475.78533 0.00 26.50 1543 1543 MS2 19/22 Linfeng_20120514_rIgG_2.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 557 3.07 0.00 0 9 100 2 597.31256 1193.61785 1.44 29.16 1825 1825 MS2 15/18 Linfeng_20120514_rIgG_3.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 569 3.07 0.00 0 9 100 2 597.31335 1193.61943 2.77 30.88 1848 1848 MS2 15/18 Linfeng_20120514_rIgG_6.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 539 3.07 0.00 0 9 100 2 597.31305 1193.61882 2.26 30.71 1802 1802 MS2 14/18 Linfeng_20120514_rIgG_4.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 574 3.07 0.00 0 4 100 2 597.31183 1193.61638 0.22 29.70 1690 1690 MS2 14/18 Linfeng_20120514_rIgG_7.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 584 3.08 0.00 0 4 100 2 597.31335 1193.61943 2.77 30.13 1954 1954 MS2 15/18 Linfeng_20120515_BRCA1_8.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 601 3.08 0.00 0 8 100 2 738.39813 1475.78899 2.48 30.80 1992 1992 MS2 18/22 Linfeng_20120514_rIgG_3.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 575 3.08 0.00 0 3 100 2 597.31268 1193.61809 1.65 30.20 1965 1965 MS2 16/18 Linfeng_20120515_BRCA1_8.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 606 3.08 0.00 0 5 100 2 597.31165 1193.61601 -0.09 29.18 1687 1687 MS2 17/18 Linfeng_20120515_BRCA1_1.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 567 3.08 0.00 0 1 100 2 597.31250 1193.61772 1.34 29.67 1694 1694 MS2 15/18 Linfeng_20120514_rIgG_5.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 518 3.10 0.00 0 20 63 2 632.35016 1263.69304 -1.06 48.84 4399 4399 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 557 3.10 0.00 0 5 100 2 597.31293 1193.61858 2.06 30.39 1986 1986 MS2 16/18 Linfeng_20120515_BRCA1_8.raw High LNDLEEALQQAK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 541 3.10 0.00 0 17 100 2 686.35968 1371.71208 0.42 41.05 3273 3273 MS2 14/22 Linfeng_20120514_rIgG_3.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 557 3.10 0.00 0 11 100 2 597.31317 1193.61907 2.47 30.78 1946 1946 MS2 16/18 Linfeng_20120514_rIgG_1.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 572 3.11 0.00 0 2 100 2 597.31262 1193.61797 1.55 29.98 1742 1742 MS2 15/18 Linfeng_20120514_rIgG_4.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 535 3.11 0.00 0 5 100 2 597.31311 1193.61894 2.36 30.43 1807 1807 MS2 15/18 Linfeng_20120515_BRCA1_1.raw High NVQDAIADAEQR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 371 3.11 0.00 0 1 100 2 665.32361 1329.63994 0.41 29.10 1764 1764 MS2 17/22 Linfeng_20120514_rIgG_1.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 496 3.11 0.00 0 14 100 2 919.95685 1838.90642 -4.40 44.82 3451 3451 MS2 13/42 Linfeng_20120515_BRCA1_9.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 3.11 0.00 0 27 100 2 632.35065 1263.69402 -0.29 45.86 3667 3667 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 659 3.12 0.00 0 4 100 2 738.39667 1475.78606 0.50 27.04 1552 1552 MS2 17/22 Linfeng_20120514_rIgG_10.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 573 3.12 0.00 0 1 100 2 597.31226 1193.61724 0.93 29.84 1730 1730 MS2 16/18 Linfeng_20120514_rIgG_4.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 609 3.12 0.00 0 18 100 2 597.31177 1193.61626 0.11 30.54 2013 2013 MS2 16/18 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 438 3.13 0.00 0 26 100 2 632.35107 1263.69487 0.39 46.04 3711 3711 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 512 3.13 0.00 0 2 100 2 597.31250 1193.61772 1.34 30.23 1789 1789 MS2 15/18 Linfeng_20120515_BRCA1_1.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 577 3.14 0.00 0 6 100 2 597.31189 1193.61650 0.32 29.27 1696 1696 MS2 15/18 Linfeng_20120515_BRCA1_1.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 533 3.14 0.00 0 10 100 2 597.31305 1193.61882 2.26 30.90 1859 1859 MS2 15/18 Linfeng_20120515_BRCA1_1.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 613 3.14 0.00 0 7 100 2 738.39606 1475.78484 -0.33 33.62 2440 2440 MS2 14/22 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 471 3.15 0.00 0 32 100 2 632.35181 1263.69634 1.55 46.54 4386 4386 MS2 16/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 432 3.16 0.00 0 19 100 2 632.34955 1263.69182 -2.03 48.82 4535 4535 MS2 17/20 Linfeng_20120514_rIgG_3.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 589 3.16 0.00 0 2 100 2 738.39740 1475.78752 1.49 26.98 1562 1562 MS2 15/22 Linfeng_20120514_rIgG_8.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 576 3.17 0.00 0 9 100 2 597.31244 1193.61760 1.24 29.51 1806 1806 MS2 14/18 Linfeng_20120514_rIgG_8.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 600 3.17 0.00 0 30 100 2 738.39771 1475.78813 1.91 32.57 2279 2279 MS2 14/22 Linfeng_20120514_rIgG_2.raw High NKLNDLEEALQQAK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 536 3.17 0.00 1 14 100 2 807.42865 1613.85002 0.39 46.66 3869 3869 MS2 15/26 Linfeng_20120514_rIgG_4.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 556 3.18 0.00 0 5 100 2 597.31268 1193.61809 1.65 29.72 1881 1881 MS2 16/18 Linfeng_20120514_rIgG_3.raw High NVQDAIADAEQR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 381 3.18 0.00 0 4 100 2 665.32367 1329.64006 0.50 29.41 1696 1696 MS2 18/22 Linfeng_20120514_rIgG_4.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 567 3.18 0.00 0 15 100 2 597.31250 1193.61772 1.34 30.92 1961 1961 MS2 16/18 Linfeng_20120514_rIgG_1.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 580 3.19 0.00 0 3 100 2 597.31244 1193.61760 1.24 29.69 1715 1715 MS2 16/18 Linfeng_20120514_rIgG_4.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 591 3.19 0.00 0 3 100 2 597.31207 1193.61687 0.63 29.90 1688 1688 MS2 16/18 Linfeng_20120515_BRCA1_4.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 648 3.19 0.00 0 2 100 2 738.39581 1475.78435 -0.66 27.04 1496 1496 MS2 17/22 Linfeng_20120514_rIgG_5.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 419 3.20 0.00 0 33 100 2 632.35156 1263.69585 1.16 46.05 4283 4283 MS2 16/20 Linfeng_20120514_rIgG_2.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 598 3.20 0.00 0 10 100 2 597.31232 1193.61736 1.04 30.22 1694 1694 MS2 14/18 Linfeng_20120515_BRCA1_3.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 664 3.21 0.00 0 4 100 2 738.39587 1475.78447 -0.58 27.31 1506 1506 MS2 19/22 Linfeng_20120515_BRCA1_4.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 509 3.21 0.00 0 8 100 2 919.96204 1838.91680 1.24 45.98 3708 3708 MS2 16/42 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 491 3.22 0.00 0 38 100 2 632.35114 1263.69499 0.48 46.67 4076 4076 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 422 3.22 0.00 0 24 100 2 632.35083 1263.69438 0.00 45.90 3141 3141 MS2 17/20 Linfeng_20120515_BRCA1_2.raw High VDLLNQEIEFLK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 577 3.22 0.00 0 2 8 2 730.90295 1460.79863 -0.66 49.03 4603 4603 MS2 16/22 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 374 3.22 0.00 0 19 100 2 632.35010 1263.69292 -1.16 45.76 3935 3935 MS2 17/20 Linfeng_20120514_rIgG_3.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 628 3.24 0.00 0 5 100 2 738.39667 1475.78606 0.50 28.88 1792 1792 MS2 15/22 Linfeng_20120515_BRCA1_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 435 3.24 0.00 0 24 100 2 632.35028 1263.69328 -0.87 45.64 3920 3920 MS2 18/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 457 3.24 0.00 0 33 100 2 632.35156 1263.69585 1.16 46.60 3844 3844 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 608 3.26 0.00 0 3 100 2 738.39844 1475.78960 2.90 27.20 1579 1579 MS2 16/22 Linfeng_20120514_rIgG_9.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 629 3.26 0.00 0 0 100 2 738.39587 1475.78447 -0.58 27.12 1505 1505 MS2 14/22 Linfeng_20120514_rIgG_7.raw High LNDLEEALQQAK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 569 3.27 0.00 0 19 100 2 686.35858 1371.70989 -1.18 41.08 3111 3111 MS2 16/22 Linfeng_20120515_BRCA1_1.raw High VLYDAEISQIHQSVTDTNVILSMDNSR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 506 3.27 0.00 0 2 17 3 1016.83514 3048.49088 -1.15 48.87 5268 5268 MS2 20/104 Linfeng_20120515_BRCA1_8.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 637 3.27 0.00 0 0 100 2 738.39630 1475.78533 0.00 29.48 1646 1646 MS2 16/22 Linfeng_20120515_BRCA1_6.raw High LNDLEEALQQAK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 565 3.27 0.00 0 8 100 2 686.35883 1371.71037 -0.82 41.77 3170 3170 MS2 14/22 Linfeng_20120515_BRCA1_1.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 595 3.28 0.00 0 10 100 2 597.31268 1193.61809 1.65 30.05 1872 1872 MS2 16/18 Linfeng_20120515_BRCA1_5.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 446 3.29 0.00 0 30 81 2 632.34961 1263.69194 -1.93 48.82 4861 4861 MS2 18/20 Linfeng_20120514_rIgG_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 494 3.30 0.00 0 53 100 2 632.35089 1263.69451 0.10 47.25 4062 4062 MS2 16/20 Linfeng_20120514_rIgG_10.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 548 3.30 0.00 0 10 100 2 597.31238 1193.61748 1.14 30.46 1912 1912 MS2 14/18 Linfeng_20120514_rIgG_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 472 3.30 0.00 0 26 100 2 632.35095 1263.69463 0.19 45.84 3132 3132 MS2 17/20 Linfeng_20120515_BRCA1_2.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 583 3.31 0.00 0 5 100 2 597.31238 1193.61748 1.14 30.12 1873 1873 MS2 14/18 Linfeng_20120515_BRCA1_10.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 594 3.32 0.00 0 16 100 2 597.31201 1193.61675 0.52 30.51 2009 2009 MS2 16/18 Linfeng_20120514_rIgG_2.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 477 3.32 0.00 0 19 100 2 919.96063 1838.91399 -0.28 43.85 3189 3189 MS2 19/42 Linfeng_20120515_BRCA1_4.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 620 3.33 0.00 0 8 100 2 597.31226 1193.61724 0.93 29.46 1800 1800 MS2 15/18 Linfeng_20120514_rIgG_8.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 657 3.36 0.00 0 4 100 2 738.39655 1475.78581 0.33 29.34 1645 1645 MS2 18/22 Linfeng_20120515_BRCA1_4.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 577 3.37 0.00 0 4 100 2 597.31244 1193.61760 1.24 30.19 1786 1786 MS2 17/18 Linfeng_20120515_BRCA1_1.raw High VLYDAEISQIHQSVTDTNVILSMDNSR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 501 3.37 0.00 0 0 36 3 1016.83472 3048.48960 -1.57 48.90 4559 4559 MS2 23/104 Linfeng_20120514_rIgG_3.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 618 3.37 0.00 0 14 100 2 597.31201 1193.61675 0.52 28.90 1817 1817 MS2 15/18 Linfeng_20120514_rIgG_2.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 571 3.38 0.00 0 3 100 2 597.31244 1193.61760 1.24 30.16 1758 1758 MS2 14/18 Linfeng_20120514_rIgG_4.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 570 3.38 0.00 0 7 100 2 597.31268 1193.61809 1.65 30.30 1785 1785 MS2 16/18 Linfeng_20120514_rIgG_6.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 422 3.41 0.00 0 25 100 2 632.35077 1263.69426 -0.09 46.13 3994 3994 MS2 17/20 Linfeng_20120514_rIgG_3.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 543 3.41 0.00 0 21 100 2 597.31329 1193.61931 2.67 30.93 2008 2008 MS2 14/18 Linfeng_20120514_rIgG_3.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 663 3.42 0.00 0 7 100 2 738.39655 1475.78581 0.33 29.22 1677 1677 MS2 17/22 Linfeng_20120515_BRCA1_9.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 665 3.42 0.00 0 2 100 2 738.39655 1475.78581 0.33 28.13 1603 1603 MS2 17/22 Linfeng_20120515_BRCA1_9.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 624 3.43 0.00 0 0 100 2 738.39673 1475.78618 0.58 27.07 1556 1556 MS2 18/22 Linfeng_20120514_rIgG_10.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 530 3.44 0.00 0 13 100 2 597.31287 1193.61846 1.96 31.06 1980 1980 MS2 14/18 Linfeng_20120514_rIgG_1.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 614 3.46 0.00 0 3 100 2 738.39716 1475.78703 1.16 34.64 2609 2609 MS2 17/22 Linfeng_20120514_rIgG_2.raw High NKLNDLEEALQQAK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 544 3.46 0.00 1 15 100 2 807.42926 1613.85124 1.14 46.17 3657 3657 MS2 18/26 Linfeng_20120515_BRCA1_7.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 509 3.49 0.00 0 8 100 2 597.31287 1193.61846 1.96 29.24 1831 1831 MS2 16/18 Linfeng_20120514_rIgG_3.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 615 3.50 0.00 0 15 100 2 738.39734 1475.78740 1.41 26.76 1545 1545 MS2 19/22 Linfeng_20120514_rIgG_3.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 560 3.54 0.00 0 5 100 2 597.31262 1193.61797 1.55 30.03 1857 1857 MS2 16/18 Linfeng_20120514_rIgG_1.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 612 3.56 0.00 0 1 100 2 738.39716 1475.78703 1.16 27.65 1558 1558 MS2 17/22 Linfeng_20120515_BRCA1_9.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 568 3.59 0.00 0 3 100 2 597.31250 1193.61772 1.34 30.07 1774 1774 MS2 15/18 Linfeng_20120515_BRCA1_1.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 590 3.61 0.00 0 9 100 2 597.31238 1193.61748 1.14 28.98 1828 1828 MS2 16/18 Linfeng_20120514_rIgG_2.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 548 3.61 0.00 0 4 100 2 597.31238 1193.61748 1.14 30.13 1870 1870 MS2 16/18 Linfeng_20120514_rIgG_1.raw High VLYDAEISQIHQSVTDTNVILSMDNSR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 502 3.62 0.00 0 0 11 3 1016.83533 3048.49143 -0.97 48.89 4963 4963 MS2 31/104 Linfeng_20120514_rIgG_2.raw High LNDLEEALQQAK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 507 3.63 0.00 0 7 100 2 686.36011 1371.71294 1.05 41.48 3688 3688 MS2 17/22 Linfeng_20120515_BRCA1_8.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 541 3.63 0.00 0 5 100 2 597.31281 1193.61833 1.85 30.11 1918 1918 MS2 17/18 Linfeng_20120514_rIgG_3.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 571 3.64 0.00 0 3 100 2 738.39746 1475.78765 1.57 27.03 1570 1570 MS2 16/22 Linfeng_20120514_rIgG_8.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 617 3.64 0.00 0 2 100 2 738.39697 1475.78667 0.91 29.06 1769 1769 MS2 17/22 Linfeng_20120514_rIgG_8.raw High VLYDAEISQIHQSVTDTNVILSMDNSR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 504 3.65 0.00 0 0 8 3 1016.83447 3048.48886 -1.81 48.91 4890 4890 MS2 29/104 Linfeng_20120514_rIgG_1.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 634 3.66 0.00 0 0 100 2 738.39648 1475.78569 0.25 29.15 1650 1650 MS2 18/22 Linfeng_20120514_rIgG_7.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 522 3.66 0.00 0 3 100 2 597.31281 1193.61833 1.85 29.56 1865 1865 MS2 16/18 Linfeng_20120514_rIgG_3.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 569 3.66 0.00 0 4 100 2 597.31244 1193.61760 1.24 29.77 1704 1704 MS2 15/18 Linfeng_20120514_rIgG_5.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 655 3.67 0.00 0 3 100 2 738.39569 1475.78411 -0.82 28.42 1571 1571 MS2 19/22 Linfeng_20120515_BRCA1_3.raw High LNDLEEALQQAK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 522 3.69 0.00 0 4 100 2 686.36011 1371.71294 1.05 41.74 2992 2992 MS2 17/22 Linfeng_20120514_rIgG_4.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 653 3.70 0.00 0 5 100 2 738.39661 1475.78594 0.42 28.90 1734 1734 MS2 16/22 Linfeng_20120515_BRCA1_10.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 600 3.70 0.00 0 3 100 2 738.39844 1475.78960 2.90 27.34 1619 1619 MS2 16/22 Linfeng_20120515_BRCA1_8.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 496 3.70 0.00 0 45 100 2 919.95679 1838.90630 -4.47 44.37 3313 3313 MS2 19/42 Linfeng_20120515_BRCA1_4.raw High VDLLNQEIEFLK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 537 3.71 0.00 0 2 3 2 730.90302 1460.79875 -0.57 49.00 4675 4675 MS2 17/22 Linfeng_20120515_BRCA1_1.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 510 3.72 0.00 0 7 3 2 665.36542 1329.72356 -1.90 49.00 4513 4513 MS2 19/22 Linfeng_20120514_rIgG_10.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 478 3.73 0.00 0 40 100 2 919.96051 1838.91374 -0.42 43.58 3594 3594 MS2 21/42 Linfeng_20120514_rIgG_1.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 576 3.73 0.00 0 1 100 2 738.39807 1475.78887 2.40 27.76 1671 1671 MS2 18/22 Linfeng_20120515_BRCA1_8.raw High LNDLEEALQQAK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 515 3.73 0.00 0 6 100 2 686.35980 1371.71233 0.60 42.07 3370 3370 MS2 17/22 Linfeng_20120514_rIgG_3.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 605 3.73 0.00 0 1 100 2 738.39685 1475.78642 0.75 27.44 1594 1594 MS2 19/22 Linfeng_20120514_rIgG_10.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 501 3.73 0.00 0 17 100 2 919.96106 1838.91484 0.18 45.22 3530 3530 MS2 19/42 Linfeng_20120514_rIgG_4.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 607 3.74 0.00 0 41 100 2 738.39679 1475.78630 0.66 29.76 1829 1829 MS2 16/22 Linfeng_20120514_rIgG_1.raw High NVQDAIADAEQR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 390 3.74 0.00 0 14 100 2 665.32349 1329.63970 0.22 28.71 1749 1749 MS2 18/22 Linfeng_20120515_BRCA1_5.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 516 3.74 0.00 0 9 100 2 597.31281 1193.61833 1.85 30.24 1885 1885 MS2 16/18 Linfeng_20120514_rIgG_1.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 499 3.74 0.00 0 8 100 2 919.96027 1838.91326 -0.68 55.49 5758 5758 MS2 23/42 Linfeng_20120514_rIgG_1.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 470 3.75 0.00 0 49 100 2 919.95825 1838.90923 -2.87 43.95 3440 3440 MS2 21/42 Linfeng_20120515_BRCA1_1.raw High NVQDAIADAEQR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 424 3.75 0.00 0 4 100 2 665.32428 1329.64128 1.42 29.29 1838 1838 MS2 18/22 Linfeng_20120514_rIgG_3.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 570 3.77 0.00 0 8 100 2 597.31238 1193.61748 1.14 30.39 1903 1903 MS2 16/18 Linfeng_20120514_rIgG_1.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 588 3.77 0.00 0 3 100 2 597.31207 1193.61687 0.63 29.86 1748 1748 MS2 17/18 Linfeng_20120515_BRCA1_1.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 631 3.77 0.00 0 5 100 2 738.39648 1475.78569 0.25 29.07 1645 1645 MS2 18/22 Linfeng_20120514_rIgG_5.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 609 3.77 0.00 0 1 100 2 738.39746 1475.78765 1.57 27.53 1619 1619 MS2 17/22 Linfeng_20120514_rIgG_9.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 534 3.78 0.00 0 6 100 2 597.31274 1193.61821 1.75 29.50 1857 1857 MS2 16/18 Linfeng_20120514_rIgG_3.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 596 3.79 0.00 0 0 100 2 738.39856 1475.78984 3.06 27.63 1653 1653 MS2 16/22 Linfeng_20120515_BRCA1_8.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 617 3.81 0.00 0 0 100 2 738.39758 1475.78789 1.74 27.45 1612 1612 MS2 17/22 Linfeng_20120514_rIgG_9.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 610 3.81 0.00 0 27 100 2 738.39740 1475.78752 1.49 29.91 1839 1839 MS2 19/22 Linfeng_20120515_BRCA1_10.raw High LNDLEEALQQAK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 500 3.82 0.00 0 1 100 2 686.36169 1371.71611 3.36 41.90 3351 3351 MS2 17/22 Linfeng_20120514_rIgG_1.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 625 3.82 0.00 0 1 100 2 738.39673 1475.78618 0.58 29.02 1671 1671 MS2 18/22 Linfeng_20120514_rIgG_6.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 609 3.83 0.00 0 11 100 2 738.39758 1475.78789 1.74 31.55 2130 2130 MS2 17/22 Linfeng_20120514_rIgG_2.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 643 3.85 0.00 0 1 100 2 738.39636 1475.78545 0.09 29.03 1675 1675 MS2 19/22 Linfeng_20120515_BRCA1_1.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 611 3.85 0.00 0 1 100 2 738.39679 1475.78630 0.66 28.04 1680 1680 MS2 19/22 Linfeng_20120514_rIgG_8.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 594 3.86 0.00 0 3 100 2 597.31238 1193.61748 1.14 29.37 1787 1787 MS2 16/18 Linfeng_20120514_rIgG_1.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 652 3.86 0.00 0 1 100 2 738.39655 1475.78581 0.33 27.25 1575 1575 MS2 16/22 Linfeng_20120514_rIgG_10.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 609 3.87 0.00 0 1 100 2 738.39606 1475.78484 -0.33 29.25 1670 1670 MS2 20/22 Linfeng_20120515_BRCA1_7.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 614 3.88 0.00 0 4 100 2 738.39648 1475.78569 0.25 29.15 1768 1768 MS2 17/22 Linfeng_20120514_rIgG_9.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 479 3.89 0.00 0 46 100 2 919.95740 1838.90752 -3.80 44.22 3504 3504 MS2 22/42 Linfeng_20120515_BRCA1_1.raw High YEELQVTVGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 621 3.89 0.00 0 9 100 2 597.31201 1193.61675 0.52 29.31 1866 1866 MS2 16/18 Linfeng_20120514_rIgG_2.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 612 3.91 0.00 0 1 100 2 738.39618 1475.78508 -0.16 28.06 1568 1568 MS2 20/22 Linfeng_20120514_rIgG_5.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 665 3.92 0.00 0 4 100 2 738.39667 1475.78606 0.50 29.09 1762 1762 MS2 19/22 Linfeng_20120514_rIgG_1.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 614 3.95 0.00 0 2 83 2 738.39752 1475.78777 1.66 28.78 1788 1788 MS2 20/22 Linfeng_20120514_rIgG_3.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 632 3.97 0.00 0 7 100 2 738.39648 1475.78569 0.25 30.55 2014 2014 MS2 19/22 Linfeng_20120514_rIgG_2.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 614 3.97 0.00 0 3 100 2 738.39709 1475.78691 1.08 27.58 1607 1607 MS2 19/22 Linfeng_20120515_BRCA1_10.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 617 4.00 0.00 0 2 77 2 738.39691 1475.78655 0.83 27.89 1646 1646 MS2 20/22 Linfeng_20120515_BRCA1_10.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 653 4.01 0.00 0 1 100 2 738.39667 1475.78606 0.50 28.14 1677 1677 MS2 18/22 Linfeng_20120514_rIgG_9.raw High VLYDAEISQIHQSVTDTNVILSmDNSR Unambiguous 1 1 IPI00021304.1 M23(Oxidation) CID 1.0000 0.0000 1 1 478 4.01 0.00 0 7 100 3 1022.16669 3064.48551 -1.23 48.61 3660 3660 MS2 29/104 Linfeng_20120515_BRCA1_2.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 652 4.02 0.00 0 1 100 2 738.39575 1475.78423 -0.74 28.23 1576 1576 MS2 19/22 Linfeng_20120515_BRCA1_7.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 611 4.06 0.00 0 2 100 2 738.39618 1475.78508 -0.16 27.04 1542 1542 MS2 20/22 Linfeng_20120514_rIgG_1.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 654 4.07 0.00 0 0 100 2 738.39575 1475.78423 -0.74 28.47 1581 1581 MS2 18/22 Linfeng_20120515_BRCA1_6.raw High VLYDAEISQIHQSVTDTNVILSmDNSR Unambiguous 1 1 IPI00021304.1 M23(Oxidation) CID 1.0000 0.0000 1 1 469 4.10 0.00 0 3 100 3 1022.16748 3064.48789 -0.46 48.65 4137 4137 MS2 36/104 Linfeng_20120514_rIgG_7.raw High VLYDAEISQIHQSVTDTNVILSmDNSR Unambiguous 1 1 IPI00021304.1 M23(Oxidation) CID 1.0000 0.0000 1 1 478 4.12 0.00 0 1 36 3 1022.16833 3064.49045 0.38 48.66 5201 5201 MS2 29/104 Linfeng_20120515_BRCA1_8.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 607 4.13 0.00 0 2 100 2 738.39679 1475.78630 0.66 29.00 1665 1665 MS2 19/22 Linfeng_20120514_rIgG_4.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 599 4.13 0.00 0 2 100 2 738.39844 1475.78960 2.90 27.86 1679 1679 MS2 19/22 Linfeng_20120515_BRCA1_8.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 618 4.13 0.00 0 3 100 2 738.39685 1475.78642 0.75 29.46 1818 1818 MS2 20/22 Linfeng_20120515_BRCA1_5.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 615 4.14 0.00 0 1 100 2 738.39740 1475.78752 1.49 29.79 1890 1890 MS2 20/22 Linfeng_20120514_rIgG_3.raw High VDLLNQEIEFLK Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 544 4.16 0.00 0 2 1 2 730.90363 1460.79997 0.26 49.00 4457 4457 MS2 18/22 Linfeng_20120515_BRCA1_4.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 615 4.20 0.00 0 2 100 2 738.39618 1475.78508 -0.16 28.46 1690 1690 MS2 20/22 Linfeng_20120514_rIgG_10.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 623 4.21 0.00 0 3 100 2 738.39691 1475.78655 0.83 29.47 1782 1782 MS2 19/22 Linfeng_20120514_rIgG_10.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 647 4.23 0.00 0 1 100 2 738.39642 1475.78557 0.17 28.21 1611 1611 MS2 19/22 Linfeng_20120515_BRCA1_9.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 622 4.23 0.00 0 2 100 2 738.39648 1475.78569 0.25 28.33 1576 1576 MS2 19/22 Linfeng_20120515_BRCA1_4.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 495 4.24 0.00 0 0 100 2 919.95898 1838.91069 -2.08 55.45 5748 5748 MS2 23/42 Linfeng_20120514_rIgG_1.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 614 4.26 0.00 0 3 100 2 738.39740 1475.78752 1.49 27.49 1598 1598 MS2 20/22 Linfeng_20120515_BRCA1_10.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 629 4.26 0.00 0 0 100 2 738.39825 1475.78923 2.65 27.71 1665 1665 MS2 19/22 Linfeng_20120515_BRCA1_8.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 622 4.26 0.00 0 2 100 2 738.39734 1475.78740 1.41 27.64 1615 1615 MS2 19/22 Linfeng_20120515_BRCA1_10.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 618 4.29 0.00 0 3 97 2 738.39697 1475.78667 0.91 29.54 1894 1894 MS2 20/22 Linfeng_20120514_rIgG_2.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 615 4.31 0.00 0 3 95 2 738.39697 1475.78667 0.91 27.71 1624 1624 MS2 19/22 Linfeng_20120515_BRCA1_10.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 662 4.32 0.00 0 2 100 2 738.39667 1475.78606 0.50 28.38 1566 1566 MS2 20/22 Linfeng_20120515_BRCA1_2.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 647 4.32 0.00 0 4 100 2 738.39636 1475.78545 0.09 28.44 1722 1722 MS2 20/22 Linfeng_20120515_BRCA1_5.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 567 4.34 0.00 0 2 100 2 738.39893 1475.79057 3.56 27.67 1660 1660 MS2 20/22 Linfeng_20120515_BRCA1_8.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 612 4.37 0.00 0 0 100 2 738.39691 1475.78655 0.83 27.85 1574 1574 MS2 17/22 Linfeng_20120515_BRCA1_9.raw High VLYDAEISQIHQSVTDTNVILSmDNSR Unambiguous 1 1 IPI00021304.1 M23(Oxidation) CID 1.0000 0.0000 1 1 471 4.38 0.00 0 4 53 3 1022.16736 3064.48752 -0.58 48.62 4391 4391 MS2 37/104 Linfeng_20120514_rIgG_10.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 631 4.40 0.00 0 2 100 2 738.39648 1475.78569 0.25 28.01 1581 1581 MS2 19/22 Linfeng_20120514_rIgG_6.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 598 4.41 0.00 0 1 100 2 738.39612 1475.78496 -0.25 28.14 1577 1577 MS2 19/22 Linfeng_20120514_rIgG_7.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 661 4.43 0.00 0 3 68 2 738.39661 1475.78594 0.42 28.03 1586 1586 MS2 20/22 Linfeng_20120515_BRCA1_1.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 613 4.44 0.00 0 2 90 2 738.39691 1475.78655 0.83 27.75 1629 1629 MS2 20/22 Linfeng_20120515_BRCA1_10.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 617 4.45 0.00 0 3 24 2 738.39703 1475.78679 1.00 27.52 1656 1656 MS2 20/22 Linfeng_20120514_rIgG_2.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 610 4.50 0.00 0 3 73 2 738.39685 1475.78642 0.75 27.98 1579 1579 MS2 20/22 Linfeng_20120514_rIgG_4.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 607 4.53 0.00 0 1 100 2 738.39716 1475.78703 1.16 27.73 1640 1640 MS2 20/22 Linfeng_20120514_rIgG_9.raw High VLYDAEISQIHQSVTDTNVILSmDNSR Unambiguous 1 1 IPI00021304.1 M23(Oxidation) CID 1.0000 0.0000 1 1 468 4.54 0.00 0 8 70 3 1022.16748 3064.48789 -0.46 48.68 4908 4908 MS2 39/104 Linfeng_20120515_BRCA1_10.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 648 4.56 0.00 0 2 62 2 738.39636 1475.78545 0.09 28.53 1773 1773 MS2 20/22 Linfeng_20120514_rIgG_2.raw High SISISVAGGGGGFGAAGGFGGR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 467 4.60 0.00 0 0 100 2 919.96283 1838.91838 2.11 55.44 5786 5786 MS2 21/42 Linfeng_20120514_rIgG_2.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 627 4.60 0.00 0 2 38 2 738.39673 1475.78618 0.58 28.07 1653 1653 MS2 20/22 Linfeng_20120514_rIgG_1.raw High VLYDAEISQIHQSVTDTNVILSmDNSR Unambiguous 1 1 IPI00021304.1 M23(Oxidation) CID 1.0000 0.0000 1 1 468 4.62 0.00 0 3 100 3 1022.16748 3064.48789 -0.46 48.57 4791 4791 MS2 35/104 Linfeng_20120514_rIgG_1.raw High VLYDAEISQIHQSVTDTNVILSMDNSR Unambiguous 1 1 IPI00021304.1 CID 1.0000 0.0000 1 1 501 4.66 0.00 0 0 29 3 1016.83435 3048.48850 -1.93 48.90 4425 4425 MS2 31/104 Linfeng_20120514_rIgG_4.raw High VLYDAEISQIHQSVTDTNVILSmDNSR Unambiguous 1 1 IPI00021304.1 M23(Oxidation) CID 1.0000 0.0000 1 1 467 4.66 0.00 0 2 100 3 1022.16766 3064.48844 -0.28 48.61 4485 4485 MS2 37/104 Linfeng_20120514_rIgG_3.raw High FLEQQNQVLQTK Unambiguous 2 2 IPI00220327.4;IPI00021304.1 CID 1.0000 0.0000 1 1 576 4.66 0.00 0 3 27 2 738.39807 1475.78887 2.40 27.78 1668 1668 MS2 20/22 Linfeng_20120514_rIgG_3.raw High VLYDAEISQIHQSVTDTNVILSmDNSR Unambiguous 1 1 IPI00021304.1 M23(Oxidation) CID 1.0000 0.0000 1 1 469 4.79 0.00 0 2 100 3 1022.16785 3064.48899 -0.10 48.68 4157 4157 MS2 34/104 Linfeng_20120515_BRCA1_6.raw High VLYDAEISQIHQSVTDTNVILSmDNSR Unambiguous 1 1 IPI00021304.1 M23(Oxidation) CID 1.0000 0.0000 1 1 474 4.84 0.00 0 5 100 3 1022.16724 3064.48716 -0.70 48.65 4575 4575 MS2 37/104 Linfeng_20120514_rIgG_9.raw High VLYDAEISQIHQSVTDTNVILSmDNSR Unambiguous 1 1 IPI00021304.1 M23(Oxidation) CID 1.0000 0.0000 1 1 478 4.96 0.00 0 0 100 3 1022.16833 3064.49045 0.38 48.62 4768 4768 MS2 35/104 Linfeng_20120514_rIgG_6.raw High VLYDAEISQIHQSVTDTNVILSmDNSR Unambiguous 1 1 IPI00021304.1 M23(Oxidation) CID 1.0000 0.0000 1 1 470 4.97 0.00 0 0 93 3 1022.16736 3064.48752 -0.58 48.55 4864 4864 MS2 39/104 Linfeng_20120514_rIgG_2.raw High VLYDAEISQIHQSVTDTNVILSmDNSR Unambiguous 1 1 IPI00021304.1 M23(Oxidation) CID 1.0000 0.0000 1 1 477 4.99 0.00 0 9 89 3 1022.16693 3064.48624 -0.99 48.66 4358 4358 MS2 39/104 Linfeng_20120515_BRCA1_9.raw High VLYDAEISQIHQSVTDTNVILSmDNSR Unambiguous 1 1 IPI00021304.1 M23(Oxidation) CID 1.0000 0.0000 1 1 475 5.02 0.00 0 8 100 3 1022.16724 3064.48716 -0.70 48.63 4332 4332 MS2 36/104 Linfeng_20120515_BRCA1_4.raw High VLYDAEISQIHQSVTDTNVILSmDNSR Unambiguous 1 1 IPI00021304.1 M23(Oxidation) CID 1.0000 0.0000 1 1 478 5.06 0.00 0 3 100 3 1022.16821 3064.49009 0.26 48.64 4206 4206 MS2 36/104 Linfeng_20120515_BRCA1_3.raw High VLYDAEISQIHQSVTDTNVILSmDNSR Unambiguous 1 1 IPI00021304.1 M23(Oxidation) CID 1.0000 0.0000 1 1 473 5.06 0.00 0 4 67 3 1022.16730 3064.48734 -0.64 48.63 4898 4898 MS2 40/104 Linfeng_20120514_rIgG_8.raw High VLYDAEISQIHQSVTDTNVILSmDNSR Unambiguous 1 1 IPI00021304.1 M23(Oxidation) CID 1.0000 0.0000 1 1 479 5.25 0.00 0 0 74 3 1022.16827 3064.49027 0.32 48.62 4479 4479 MS2 38/104 Linfeng_20120514_rIgG_5.raw High VLYDAEISQIHQSVTDTNVILSmDNSR Unambiguous 1 1 IPI00021304.1 M23(Oxidation) CID 1.0000 0.0000 1 1 481 5.42 0.00 0 1 53 3 1022.16687 3064.48606 -1.05 48.63 4552 4552 MS2 40/104 Linfeng_20120515_BRCA1_1.raw High VLYDAEISQIHQSVTDTNVILSmDNSR Unambiguous 1 1 IPI00021304.1 M23(Oxidation) CID 1.0000 0.0000 1 1 476 5.58 0.00 0 0 85 3 1022.16711 3064.48679 -0.81 48.68 4259 4259 MS2 42/104 Linfeng_20120515_BRCA1_7.raw High VLYDAEISQIHQSVTDTNVILSmDNSR Unambiguous 1 1 IPI00021304.1 M23(Oxidation) CID 1.0000 0.0000 1 1 469 5.63 0.00 0 4 52 3 1022.16772 3064.48862 -0.22 48.66 5320 5320 MS2 39/104 Linfeng_20120515_BRCA1_5.raw High VLYDAEISQIHQSVTDTNVILSmDNSR Unambiguous 1 1 IPI00021304.1 M23(Oxidation) CID 1.0000 0.0000 1 1 483 5.73 0.00 0 0 98 3 1022.16663 3064.48532 -1.29 48.59 4332 4332 MS2 37/104 Linfeng_20120514_rIgG_4.raw IPI00942512.1 "keratin, type II cytoskeletal 3" 4.94 1 0 3 55 148.46 4.94 3 55 0.00 628 64.4 6.48 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High TAAENEFVTLK Unambiguous 9 9 IPI00942512.1;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00290857.2;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 489 2.00 0.00 0 43 100 2 611.82062 1222.63396 2.05 32.62 2207 2207 MS2 11/20 Linfeng_20120514_rIgG_3.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 330 2.01 0.00 0 28 100 2 570.27509 1139.54289 2.38 34.25 2161 2161 MS2 10/16 Linfeng_20120514_rIgG_7.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 380 2.10 0.00 0 35 100 2 570.27563 1139.54399 3.34 34.19 2179 2179 MS2 12/16 Linfeng_20120514_rIgG_4.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 334 2.12 0.00 0 55 100 2 570.27478 1139.54228 1.85 34.08 2425 2425 MS2 13/16 Linfeng_20120514_rIgG_3.raw High TAAENEFVTLK Unambiguous 9 9 IPI00942512.1;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00290857.2;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 505 2.12 0.00 0 47 100 2 611.82056 1222.63384 1.95 32.68 2216 2216 MS2 11/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 469 2.18 0.00 0 52 100 2 632.34998 1263.69267 -1.35 47.15 4212 4212 MS2 14/20 Linfeng_20120514_rIgG_9.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 332 2.21 0.00 0 5 100 2 570.27441 1139.54155 1.20 33.77 2093 2093 MS2 11/16 Linfeng_20120514_rIgG_7.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 363 2.23 0.00 0 9 100 2 570.27570 1139.54411 3.45 33.99 2149 2149 MS2 11/16 Linfeng_20120514_rIgG_4.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 337 2.26 0.00 0 11 100 2 570.27472 1139.54216 1.74 33.98 2122 2122 MS2 12/16 Linfeng_20120514_rIgG_7.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 361 2.27 0.00 0 9 100 2 570.27441 1139.54155 1.20 33.91 2110 2110 MS2 12/16 Linfeng_20120514_rIgG_7.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 373 2.28 0.00 0 21 100 2 570.27545 1139.54363 3.02 33.17 2250 2250 MS2 12/16 Linfeng_20120514_rIgG_1.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 374 2.31 0.00 0 30 100 2 570.27570 1139.54411 3.45 34.36 2207 2207 MS2 12/16 Linfeng_20120514_rIgG_4.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 335 2.34 0.00 0 10 100 2 570.27509 1139.54289 2.38 33.76 2378 2378 MS2 12/16 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 2.36 0.00 0 37 100 2 632.35046 1263.69365 -0.58 46.86 3971 3971 MS2 16/20 Linfeng_20120514_rIgG_10.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 335 2.41 0.00 0 25 100 2 570.27521 1139.54314 2.60 33.07 2234 2234 MS2 12/16 Linfeng_20120514_rIgG_1.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 379 2.43 0.00 0 29 100 2 570.27570 1139.54411 3.45 33.37 2246 2246 MS2 10/16 Linfeng_20120514_rIgG_10.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 370 2.45 0.00 0 8 100 2 570.27411 1139.54094 0.67 33.85 2104 2104 MS2 13/16 Linfeng_20120514_rIgG_7.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 473 2.46 0.00 0 46 100 2 632.35022 1263.69316 -0.96 46.78 3951 3951 MS2 17/20 Linfeng_20120514_rIgG_10.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 335 2.50 0.00 0 14 100 2 570.27478 1139.54228 1.85 33.58 2072 2072 MS2 13/16 Linfeng_20120514_rIgG_7.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 472 2.53 0.00 0 15 68 2 632.35034 1263.69341 -0.77 48.85 4961 4961 MS2 18/20 Linfeng_20120514_rIgG_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 484 2.54 0.00 0 36 100 2 632.35083 1263.69438 0.00 47.21 4177 4177 MS2 15/20 Linfeng_20120514_rIgG_3.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 366 2.54 0.00 0 18 100 2 570.27539 1139.54350 2.92 33.87 2133 2133 MS2 13/16 Linfeng_20120514_rIgG_4.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 350 2.59 0.00 0 26 100 2 570.27527 1139.54326 2.70 33.04 2229 2229 MS2 13/16 Linfeng_20120514_rIgG_1.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 309 2.60 0.00 0 18 100 2 570.27362 1139.53996 -0.19 33.39 2199 2199 MS2 12/16 Linfeng_20120514_rIgG_6.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 453 2.61 0.00 0 63 100 2 632.35052 1263.69377 -0.48 47.45 4110 4110 MS2 16/20 Linfeng_20120514_rIgG_10.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 317 2.66 0.00 0 21 100 2 570.27484 1139.54241 1.95 33.11 2240 2240 MS2 12/16 Linfeng_20120514_rIgG_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 476 2.66 0.00 0 29 79 2 632.35144 1263.69560 0.97 48.87 4958 4958 MS2 18/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 492 2.70 0.00 0 40 100 2 632.35089 1263.69451 0.10 46.88 4113 4113 MS2 14/20 Linfeng_20120514_rIgG_3.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 336 2.71 0.00 0 13 100 2 570.27496 1139.54265 2.17 33.25 2302 2302 MS2 13/16 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 483 2.75 0.00 0 26 100 2 632.35126 1263.69524 0.68 45.46 4168 4168 MS2 18/20 Linfeng_20120514_rIgG_2.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 366 2.77 0.00 0 16 100 2 570.27380 1139.54033 0.13 33.33 2248 2248 MS2 13/16 Linfeng_20120514_rIgG_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 470 2.88 0.00 0 38 100 2 632.35089 1263.69451 0.10 47.03 4139 4139 MS2 16/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 459 2.88 0.00 0 53 100 2 632.35059 1263.69390 -0.38 46.42 3866 3866 MS2 17/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 462 2.91 0.00 0 45 100 2 632.35052 1263.69377 -0.48 47.07 4019 4019 MS2 16/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 476 2.92 0.00 0 40 100 2 632.35077 1263.69426 -0.09 46.82 3907 3907 MS2 17/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 486 2.94 0.00 0 40 100 2 632.35040 1263.69353 -0.67 47.44 4228 4228 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 499 2.95 0.00 0 58 100 2 632.35107 1263.69487 0.39 47.47 4601 4601 MS2 15/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 2.95 0.00 0 15 75 2 632.34955 1263.69182 -2.03 48.84 4404 4404 MS2 18/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 461 2.95 0.00 0 23 100 2 632.35034 1263.69341 -0.77 48.82 4535 4535 MS2 18/20 Linfeng_20120514_rIgG_5.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 492 2.99 0.00 0 57 100 2 632.35083 1263.69438 0.00 47.56 4082 4082 MS2 17/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 477 3.00 0.00 0 41 100 2 632.35059 1263.69390 -0.38 47.37 4037 4037 MS2 18/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 449 3.01 0.00 0 34 100 2 632.35071 1263.69414 -0.19 47.28 4194 4194 MS2 15/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 446 3.03 0.00 0 31 100 2 632.35193 1263.69658 1.74 46.21 4314 4314 MS2 17/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 474 3.04 0.00 0 28 100 2 632.35083 1263.69438 0.00 45.97 3839 3839 MS2 17/20 Linfeng_20120514_rIgG_5.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 413 3.05 0.00 0 28 100 2 632.35193 1263.69658 1.74 45.62 4198 4198 MS2 17/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 441 3.06 0.00 0 27 100 2 632.35101 1263.69475 0.29 45.93 3957 3957 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 471 3.15 0.00 0 32 100 2 632.35181 1263.69634 1.55 46.54 4386 4386 MS2 16/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 432 3.16 0.00 0 19 100 2 632.34955 1263.69182 -2.03 48.82 4535 4535 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 419 3.20 0.00 0 33 100 2 632.35156 1263.69585 1.16 46.05 4283 4283 MS2 16/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 491 3.22 0.00 0 38 100 2 632.35114 1263.69499 0.48 46.67 4076 4076 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 374 3.22 0.00 0 19 100 2 632.35010 1263.69292 -1.16 45.76 3935 3935 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 435 3.24 0.00 0 24 100 2 632.35028 1263.69328 -0.87 45.64 3920 3920 MS2 18/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 446 3.29 0.00 0 30 81 2 632.34961 1263.69194 -1.93 48.82 4861 4861 MS2 18/20 Linfeng_20120514_rIgG_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 494 3.30 0.00 0 53 100 2 632.35089 1263.69451 0.10 47.25 4062 4062 MS2 16/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 422 3.41 0.00 0 25 100 2 632.35077 1263.69426 -0.09 46.13 3994 3994 MS2 17/20 Linfeng_20120514_rIgG_3.raw IPI00290857.2 "Keratin, type II cytoskeletal 3" 4.93 1 0 3 55 148.46 4.93 3 55 0.00 629 64.5 6.48 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High TAAENEFVTLK Unambiguous 9 9 IPI00942512.1;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00290857.2;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 489 2.00 0.00 0 43 100 2 611.82062 1222.63396 2.05 32.62 2207 2207 MS2 11/20 Linfeng_20120514_rIgG_3.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 330 2.01 0.00 0 28 100 2 570.27509 1139.54289 2.38 34.25 2161 2161 MS2 10/16 Linfeng_20120514_rIgG_7.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 380 2.10 0.00 0 35 100 2 570.27563 1139.54399 3.34 34.19 2179 2179 MS2 12/16 Linfeng_20120514_rIgG_4.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 334 2.12 0.00 0 55 100 2 570.27478 1139.54228 1.85 34.08 2425 2425 MS2 13/16 Linfeng_20120514_rIgG_3.raw High TAAENEFVTLK Unambiguous 9 9 IPI00942512.1;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00290857.2;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 505 2.12 0.00 0 47 100 2 611.82056 1222.63384 1.95 32.68 2216 2216 MS2 11/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 469 2.18 0.00 0 52 100 2 632.34998 1263.69267 -1.35 47.15 4212 4212 MS2 14/20 Linfeng_20120514_rIgG_9.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 332 2.21 0.00 0 5 100 2 570.27441 1139.54155 1.20 33.77 2093 2093 MS2 11/16 Linfeng_20120514_rIgG_7.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 363 2.23 0.00 0 9 100 2 570.27570 1139.54411 3.45 33.99 2149 2149 MS2 11/16 Linfeng_20120514_rIgG_4.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 337 2.26 0.00 0 11 100 2 570.27472 1139.54216 1.74 33.98 2122 2122 MS2 12/16 Linfeng_20120514_rIgG_7.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 361 2.27 0.00 0 9 100 2 570.27441 1139.54155 1.20 33.91 2110 2110 MS2 12/16 Linfeng_20120514_rIgG_7.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 373 2.28 0.00 0 21 100 2 570.27545 1139.54363 3.02 33.17 2250 2250 MS2 12/16 Linfeng_20120514_rIgG_1.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 374 2.31 0.00 0 30 100 2 570.27570 1139.54411 3.45 34.36 2207 2207 MS2 12/16 Linfeng_20120514_rIgG_4.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 335 2.34 0.00 0 10 100 2 570.27509 1139.54289 2.38 33.76 2378 2378 MS2 12/16 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 2.36 0.00 0 37 100 2 632.35046 1263.69365 -0.58 46.86 3971 3971 MS2 16/20 Linfeng_20120514_rIgG_10.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 335 2.41 0.00 0 25 100 2 570.27521 1139.54314 2.60 33.07 2234 2234 MS2 12/16 Linfeng_20120514_rIgG_1.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 379 2.43 0.00 0 29 100 2 570.27570 1139.54411 3.45 33.37 2246 2246 MS2 10/16 Linfeng_20120514_rIgG_10.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 370 2.45 0.00 0 8 100 2 570.27411 1139.54094 0.67 33.85 2104 2104 MS2 13/16 Linfeng_20120514_rIgG_7.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 473 2.46 0.00 0 46 100 2 632.35022 1263.69316 -0.96 46.78 3951 3951 MS2 17/20 Linfeng_20120514_rIgG_10.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 335 2.50 0.00 0 14 100 2 570.27478 1139.54228 1.85 33.58 2072 2072 MS2 13/16 Linfeng_20120514_rIgG_7.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 472 2.53 0.00 0 15 68 2 632.35034 1263.69341 -0.77 48.85 4961 4961 MS2 18/20 Linfeng_20120514_rIgG_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 484 2.54 0.00 0 36 100 2 632.35083 1263.69438 0.00 47.21 4177 4177 MS2 15/20 Linfeng_20120514_rIgG_3.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 366 2.54 0.00 0 18 100 2 570.27539 1139.54350 2.92 33.87 2133 2133 MS2 13/16 Linfeng_20120514_rIgG_4.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 350 2.59 0.00 0 26 100 2 570.27527 1139.54326 2.70 33.04 2229 2229 MS2 13/16 Linfeng_20120514_rIgG_1.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 309 2.60 0.00 0 18 100 2 570.27362 1139.53996 -0.19 33.39 2199 2199 MS2 12/16 Linfeng_20120514_rIgG_6.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 453 2.61 0.00 0 63 100 2 632.35052 1263.69377 -0.48 47.45 4110 4110 MS2 16/20 Linfeng_20120514_rIgG_10.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 317 2.66 0.00 0 21 100 2 570.27484 1139.54241 1.95 33.11 2240 2240 MS2 12/16 Linfeng_20120514_rIgG_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 476 2.66 0.00 0 29 79 2 632.35144 1263.69560 0.97 48.87 4958 4958 MS2 18/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 492 2.70 0.00 0 40 100 2 632.35089 1263.69451 0.10 46.88 4113 4113 MS2 14/20 Linfeng_20120514_rIgG_3.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 336 2.71 0.00 0 13 100 2 570.27496 1139.54265 2.17 33.25 2302 2302 MS2 13/16 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 483 2.75 0.00 0 26 100 2 632.35126 1263.69524 0.68 45.46 4168 4168 MS2 18/20 Linfeng_20120514_rIgG_2.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 366 2.77 0.00 0 16 100 2 570.27380 1139.54033 0.13 33.33 2248 2248 MS2 13/16 Linfeng_20120514_rIgG_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 470 2.88 0.00 0 38 100 2 632.35089 1263.69451 0.10 47.03 4139 4139 MS2 16/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 459 2.88 0.00 0 53 100 2 632.35059 1263.69390 -0.38 46.42 3866 3866 MS2 17/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 462 2.91 0.00 0 45 100 2 632.35052 1263.69377 -0.48 47.07 4019 4019 MS2 16/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 476 2.92 0.00 0 40 100 2 632.35077 1263.69426 -0.09 46.82 3907 3907 MS2 17/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 486 2.94 0.00 0 40 100 2 632.35040 1263.69353 -0.67 47.44 4228 4228 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 499 2.95 0.00 0 58 100 2 632.35107 1263.69487 0.39 47.47 4601 4601 MS2 15/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 2.95 0.00 0 15 75 2 632.34955 1263.69182 -2.03 48.84 4404 4404 MS2 18/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 461 2.95 0.00 0 23 100 2 632.35034 1263.69341 -0.77 48.82 4535 4535 MS2 18/20 Linfeng_20120514_rIgG_5.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 492 2.99 0.00 0 57 100 2 632.35083 1263.69438 0.00 47.56 4082 4082 MS2 17/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 477 3.00 0.00 0 41 100 2 632.35059 1263.69390 -0.38 47.37 4037 4037 MS2 18/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 449 3.01 0.00 0 34 100 2 632.35071 1263.69414 -0.19 47.28 4194 4194 MS2 15/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 446 3.03 0.00 0 31 100 2 632.35193 1263.69658 1.74 46.21 4314 4314 MS2 17/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 474 3.04 0.00 0 28 100 2 632.35083 1263.69438 0.00 45.97 3839 3839 MS2 17/20 Linfeng_20120514_rIgG_5.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 413 3.05 0.00 0 28 100 2 632.35193 1263.69658 1.74 45.62 4198 4198 MS2 17/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 441 3.06 0.00 0 27 100 2 632.35101 1263.69475 0.29 45.93 3957 3957 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 471 3.15 0.00 0 32 100 2 632.35181 1263.69634 1.55 46.54 4386 4386 MS2 16/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 432 3.16 0.00 0 19 100 2 632.34955 1263.69182 -2.03 48.82 4535 4535 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 419 3.20 0.00 0 33 100 2 632.35156 1263.69585 1.16 46.05 4283 4283 MS2 16/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 491 3.22 0.00 0 38 100 2 632.35114 1263.69499 0.48 46.67 4076 4076 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 374 3.22 0.00 0 19 100 2 632.35010 1263.69292 -1.16 45.76 3935 3935 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 435 3.24 0.00 0 24 100 2 632.35028 1263.69328 -0.87 45.64 3920 3920 MS2 18/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 446 3.29 0.00 0 30 81 2 632.34961 1263.69194 -1.93 48.82 4861 4861 MS2 18/20 Linfeng_20120514_rIgG_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 494 3.30 0.00 0 53 100 2 632.35089 1263.69451 0.10 47.25 4062 4062 MS2 16/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 422 3.41 0.00 0 25 100 2 632.35077 1263.69426 -0.09 46.13 3994 3994 MS2 17/20 Linfeng_20120514_rIgG_3.raw IPI00009867.3 "Keratin, type II cytoskeletal 5" 17.12 1 1 9 103 182.36 17.12 9 65 103.52 9.32 5 38 590 62.3 7.74 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High NMQDLVEDFK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 308 2.03 0.00 0 40 100 2 619.79016 1238.57305 0.66 46.75 4091 4091 MS2 11/18 Linfeng_20120514_rIgG_3.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 630 2.03 0.00 0 3 2 2 665.36591 1329.72453 -1.17 49.04 4475 4475 MS2 11/22 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 436 2.04 0.00 0 32 100 2 632.34998 1263.69267 -1.35 47.14 4939 4939 MS2 16/20 Linfeng_20120515_BRCA1_5.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 780 2.06 0.00 0 53 100 2 602.32391 1203.64055 3.07 36.28 2428 2428 MS2 12/18 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 442 2.08 0.00 0 45 100 2 632.35022 1263.69316 -0.96 46.32 4619 4619 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 458 2.09 0.00 0 39 100 2 632.35022 1263.69316 -0.96 45.94 4524 4524 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 685 2.10 0.00 0 37 100 2 602.32233 1203.63738 0.43 35.52 2738 2738 MS2 11/18 Linfeng_20120514_rIgG_2.raw High ISISTSGGSFR Unambiguous 1 1 IPI00009867.3 CID 1.0000 0.0000 1 1 455 2.11 0.00 0 2 100 2 556.29193 1111.57659 2.09 28.23 1721 1721 MS2 13/20 Linfeng_20120514_rIgG_3.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 737 2.12 0.00 0 17 100 2 602.32263 1203.63799 0.94 37.76 2908 2908 MS2 13/18 Linfeng_20120514_rIgG_3.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 609 2.14 0.00 0 44 100 2 572.31793 1143.62859 2.58 35.97 2418 2418 MS2 13/18 Linfeng_20120515_BRCA1_4.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 641 2.16 0.00 0 61 100 2 602.32324 1203.63921 1.95 36.15 2412 2412 MS2 12/18 Linfeng_20120514_rIgG_4.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 783 2.17 0.00 0 51 100 2 602.32373 1203.64018 2.76 36.51 2450 2450 MS2 10/18 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 469 2.18 0.00 0 52 100 2 632.34998 1263.69267 -1.35 47.15 4212 4212 MS2 14/20 Linfeng_20120514_rIgG_9.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 449 2.19 0.00 0 51 100 2 632.34973 1263.69219 -1.74 45.90 4630 4630 MS2 17/20 Linfeng_20120515_BRCA1_5.raw High ISISTSGGSFR Unambiguous 1 1 IPI00009867.3 CID 1.0000 0.0000 1 1 446 2.21 0.00 0 5 100 2 556.29138 1111.57549 1.10 28.09 1725 1725 MS2 13/20 Linfeng_20120514_rIgG_2.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 619 2.26 0.00 0 30 100 2 572.31812 1143.62895 2.90 35.86 2381 2381 MS2 15/18 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 477 2.27 0.00 0 41 100 2 632.34985 1263.69243 -1.54 46.04 4549 4549 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 707 2.31 0.00 0 57 100 2 602.32233 1203.63738 0.43 36.78 2457 2457 MS2 12/18 Linfeng_20120514_rIgG_7.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 458 2.32 0.00 0 54 100 2 632.34973 1263.69219 -1.74 46.58 4686 4686 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 2.36 0.00 0 37 100 2 632.35046 1263.69365 -0.58 46.86 3971 3971 MS2 16/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 492 2.37 0.00 0 60 100 2 632.35114 1263.69499 0.48 46.73 4431 4431 MS2 14/20 Linfeng_20120515_BRCA1_10.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 626 2.38 0.00 0 40 100 2 572.31781 1143.62834 2.36 35.70 2609 2609 MS2 14/18 Linfeng_20120514_rIgG_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 470 2.39 0.00 0 30 100 2 632.34888 1263.69048 -3.09 46.46 4770 4770 MS2 17/20 Linfeng_20120515_BRCA1_5.raw High SFSTASAITPSVSR Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 538 2.42 0.00 0 7 100 2 705.86572 1410.72417 1.26 29.75 1920 1920 MS2 14/26 Linfeng_20120514_rIgG_2.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 750 2.43 0.00 0 19 100 2 602.32220 1203.63713 0.23 36.53 2910 2910 MS2 14/18 Linfeng_20120514_rIgG_2.raw High SFSTASAITPSVSR Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 538 2.44 0.00 0 8 100 2 705.86566 1410.72405 1.17 29.56 1807 1807 MS2 16/26 Linfeng_20120514_rIgG_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 473 2.46 0.00 0 46 100 2 632.35022 1263.69316 -0.96 46.78 3951 3951 MS2 17/20 Linfeng_20120514_rIgG_10.raw High TTAENEFVmLK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 M9(Oxidation) CID 1.0000 0.0000 1 1 416 2.48 0.00 0 16 100 2 649.81958 1298.63188 1.65 33.09 2237 2237 MS2 12/20 Linfeng_20120514_rIgG_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 464 2.48 0.00 0 36 100 2 632.35065 1263.69402 -0.29 47.09 3873 3873 MS2 17/20 Linfeng_20120515_BRCA1_7.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 723 2.49 0.00 0 14 100 2 602.32245 1203.63762 0.63 36.59 2611 2611 MS2 15/18 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 472 2.53 0.00 0 15 68 2 632.35034 1263.69341 -0.77 48.85 4961 4961 MS2 18/20 Linfeng_20120514_rIgG_8.raw High VDALmDEINFMK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 M5(Oxidation) CID 1.0000 0.0000 1 1 340 2.53 0.00 0 16 100 2 721.33929 1441.67131 0.73 46.20 4219 4219 MS2 12/22 Linfeng_20120514_rIgG_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 484 2.54 0.00 0 36 100 2 632.35083 1263.69438 0.00 47.21 4177 4177 MS2 15/20 Linfeng_20120514_rIgG_3.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 575 2.57 0.00 0 43 100 2 665.36664 1329.72600 -0.07 49.55 4833 4833 MS2 16/22 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 430 2.59 0.00 0 31 100 2 632.35077 1263.69426 -0.09 47.20 3985 3985 MS2 17/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 449 2.61 0.00 0 37 100 2 632.34973 1263.69219 -1.74 47.17 4828 4828 MS2 16/20 Linfeng_20120515_BRCA1_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 453 2.61 0.00 0 63 100 2 632.35052 1263.69377 -0.48 47.45 4110 4110 MS2 16/20 Linfeng_20120514_rIgG_10.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 514 2.61 0.00 0 4 1 2 665.36542 1329.72356 -1.90 49.02 5023 5023 MS2 14/22 Linfeng_20120515_BRCA1_10.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 719 2.62 0.00 0 38 100 2 572.31714 1143.62700 1.19 35.65 2951 2951 MS2 12/18 Linfeng_20120515_BRCA1_5.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 634 2.63 0.00 0 46 100 2 572.31726 1143.62724 1.40 35.47 2448 2448 MS2 15/18 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 506 2.66 0.00 0 46 100 2 632.35114 1263.69499 0.48 47.52 4063 4063 MS2 17/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 476 2.66 0.00 0 29 79 2 632.35144 1263.69560 0.97 48.87 4958 4958 MS2 18/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 473 2.70 0.00 0 30 100 2 632.35040 1263.69353 -0.67 47.22 4210 4210 MS2 16/20 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 492 2.70 0.00 0 40 100 2 632.35089 1263.69451 0.10 46.88 4113 4113 MS2 14/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 483 2.75 0.00 0 26 100 2 632.35126 1263.69524 0.68 45.46 4168 4168 MS2 18/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 447 2.78 0.00 0 48 100 2 632.35089 1263.69451 0.10 47.36 4023 4023 MS2 16/20 Linfeng_20120515_BRCA1_4.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 622 2.80 0.00 0 39 100 2 572.31750 1143.62773 1.83 35.96 2693 2693 MS2 14/18 Linfeng_20120514_rIgG_3.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 718 2.80 0.00 0 34 100 2 572.31714 1143.62700 1.19 35.61 2637 2637 MS2 15/18 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 463 2.80 0.00 0 31 100 2 632.35107 1263.69487 0.39 46.86 3905 3905 MS2 17/20 Linfeng_20120515_BRCA1_4.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 623 2.85 0.00 0 41 100 2 572.31818 1143.62908 3.00 35.50 2340 2340 MS2 14/18 Linfeng_20120514_rIgG_4.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 596 2.85 0.00 0 28 100 2 572.31812 1143.62895 2.90 35.75 2388 2388 MS2 13/18 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 488 2.87 0.00 0 81 100 2 632.35071 1263.69414 -0.19 46.97 4488 4488 MS2 16/20 Linfeng_20120515_BRCA1_10.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 613 2.87 0.00 0 40 100 2 572.31763 1143.62798 2.04 35.80 2668 2668 MS2 15/18 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 448 2.87 0.00 0 36 100 2 632.35059 1263.69390 -0.38 46.91 4136 4136 MS2 16/20 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 451 2.87 0.00 0 44 100 2 632.35126 1263.69524 0.68 46.57 3752 3752 MS2 16/20 Linfeng_20120515_BRCA1_7.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 470 2.88 0.00 0 38 100 2 632.35089 1263.69451 0.10 47.03 4139 4139 MS2 16/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 459 2.88 0.00 0 53 100 2 632.35059 1263.69390 -0.38 46.42 3866 3866 MS2 17/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 480 2.88 0.00 0 48 100 2 632.35101 1263.69475 0.29 47.36 4243 4243 MS2 17/20 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 462 2.91 0.00 0 45 100 2 632.35052 1263.69377 -0.48 47.07 4019 4019 MS2 16/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 476 2.92 0.00 0 40 100 2 632.35077 1263.69426 -0.09 46.82 3907 3907 MS2 17/20 Linfeng_20120514_rIgG_4.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 603 2.93 0.00 0 47 100 2 572.31830 1143.62932 3.22 35.56 2364 2364 MS2 15/18 Linfeng_20120515_BRCA1_4.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 624 2.93 0.00 0 44 100 2 572.31793 1143.62859 2.58 35.55 2347 2347 MS2 15/18 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 486 2.94 0.00 0 40 100 2 632.35040 1263.69353 -0.67 47.44 4228 4228 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 499 2.95 0.00 0 58 100 2 632.35107 1263.69487 0.39 47.47 4601 4601 MS2 15/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 2.95 0.00 0 15 75 2 632.34955 1263.69182 -2.03 48.84 4404 4404 MS2 18/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 461 2.95 0.00 0 23 100 2 632.35034 1263.69341 -0.77 48.82 4535 4535 MS2 18/20 Linfeng_20120514_rIgG_5.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 459 2.98 0.00 0 37 100 2 632.35046 1263.69365 -0.58 47.08 4177 4177 MS2 18/20 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 492 2.99 0.00 0 57 100 2 632.35083 1263.69438 0.00 47.56 4082 4082 MS2 17/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 477 3.00 0.00 0 41 100 2 632.35059 1263.69390 -0.38 47.37 4037 4037 MS2 18/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 449 3.01 0.00 0 34 100 2 632.35071 1263.69414 -0.19 47.28 4194 4194 MS2 15/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 3.01 0.00 0 25 100 2 632.35138 1263.69548 0.87 46.23 3756 3756 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 639 3.02 0.00 0 35 100 2 572.31842 1143.62956 3.43 35.81 2395 2395 MS2 16/18 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 446 3.03 0.00 0 31 100 2 632.35193 1263.69658 1.74 46.21 4314 4314 MS2 17/20 Linfeng_20120514_rIgG_2.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 635 3.04 0.00 0 22 100 2 602.32306 1203.63884 1.65 36.75 2791 2791 MS2 15/18 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 474 3.04 0.00 0 28 100 2 632.35083 1263.69438 0.00 45.97 3839 3839 MS2 17/20 Linfeng_20120514_rIgG_5.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 413 3.05 0.00 0 28 100 2 632.35193 1263.69658 1.74 45.62 4198 4198 MS2 17/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 441 3.06 0.00 0 27 100 2 632.35101 1263.69475 0.29 45.93 3957 3957 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 518 3.10 0.00 0 20 63 2 632.35016 1263.69304 -1.06 48.84 4399 4399 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 3.11 0.00 0 27 100 2 632.35065 1263.69402 -0.29 45.86 3667 3667 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 711 3.11 0.00 0 33 100 2 572.31714 1143.62700 1.19 35.67 2647 2647 MS2 16/18 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 438 3.13 0.00 0 26 100 2 632.35107 1263.69487 0.39 46.04 3711 3711 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 471 3.15 0.00 0 32 100 2 632.35181 1263.69634 1.55 46.54 4386 4386 MS2 16/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 432 3.16 0.00 0 19 100 2 632.34955 1263.69182 -2.03 48.82 4535 4535 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 419 3.20 0.00 0 33 100 2 632.35156 1263.69585 1.16 46.05 4283 4283 MS2 16/20 Linfeng_20120514_rIgG_2.raw High VDALmDEINFMK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 M5(Oxidation) CID 1.0000 0.0000 1 1 328 3.20 0.00 0 14 100 2 721.33850 1441.66973 -0.37 46.06 3939 3939 MS2 14/22 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 491 3.22 0.00 0 38 100 2 632.35114 1263.69499 0.48 46.67 4076 4076 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 422 3.22 0.00 0 24 100 2 632.35083 1263.69438 0.00 45.90 3141 3141 MS2 17/20 Linfeng_20120515_BRCA1_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 374 3.22 0.00 0 19 100 2 632.35010 1263.69292 -1.16 45.76 3935 3935 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 435 3.24 0.00 0 24 100 2 632.35028 1263.69328 -0.87 45.64 3920 3920 MS2 18/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 457 3.24 0.00 0 33 100 2 632.35156 1263.69585 1.16 46.60 3844 3844 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 634 3.25 0.00 0 32 100 2 572.31757 1143.62786 1.94 36.00 2697 2697 MS2 16/18 Linfeng_20120514_rIgG_3.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 634 3.28 0.00 0 55 100 2 572.31781 1143.62834 2.36 35.41 2562 2562 MS2 15/18 Linfeng_20120514_rIgG_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 446 3.29 0.00 0 30 81 2 632.34961 1263.69194 -1.93 48.82 4861 4861 MS2 18/20 Linfeng_20120514_rIgG_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 494 3.30 0.00 0 53 100 2 632.35089 1263.69451 0.10 47.25 4062 4062 MS2 16/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 472 3.30 0.00 0 26 100 2 632.35095 1263.69463 0.19 45.84 3132 3132 MS2 17/20 Linfeng_20120515_BRCA1_2.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 639 3.31 0.00 0 30 100 2 572.31750 1143.62773 1.83 36.06 2705 2705 MS2 15/18 Linfeng_20120514_rIgG_3.raw High VDALmDEINFmK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 M5(Oxidation); M11(Oxidation) CID 1.0000 0.0000 1 1 295 3.37 0.00 0 6 100 2 729.33704 1457.66680 1.11 37.92 2927 2927 MS2 14/22 Linfeng_20120514_rIgG_3.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 613 3.40 0.00 0 49 100 2 572.31830 1143.62932 3.22 35.28 2316 2316 MS2 14/18 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 422 3.41 0.00 0 25 100 2 632.35077 1263.69426 -0.09 46.13 3994 3994 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 612 3.43 0.00 0 32 100 2 572.31757 1143.62786 1.94 35.77 2663 2663 MS2 16/18 Linfeng_20120514_rIgG_3.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 637 3.46 0.00 0 38 100 2 572.31750 1143.62773 1.83 35.55 2629 2629 MS2 15/18 Linfeng_20120514_rIgG_3.raw High LAELEEALQK Unambiguous 2 2 IPI00009867.3;IPI00796776.1 CID 1.0000 0.0000 1 1 622 3.51 0.00 0 50 100 2 572.31757 1143.62786 1.94 35.40 2710 2710 MS2 15/18 Linfeng_20120515_BRCA1_10.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 510 3.72 0.00 0 7 3 2 665.36542 1329.72356 -1.90 49.00 4513 4513 MS2 19/22 Linfeng_20120514_rIgG_10.raw IPI00300725.7 "Keratin, type II cytoskeletal 6A" 10.82 1 0 5 79 127.71 10.82 5 46 87.42 8.87 4 33 564 60.0 8.00 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High TAAENEFVTLK Unambiguous 9 9 IPI00942512.1;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00290857.2;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 489 2.00 0.00 0 43 100 2 611.82062 1222.63396 2.05 32.62 2207 2207 MS2 11/20 Linfeng_20120514_rIgG_3.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 630 2.03 0.00 0 3 2 2 665.36591 1329.72453 -1.17 49.04 4475 4475 MS2 11/22 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 436 2.04 0.00 0 32 100 2 632.34998 1263.69267 -1.35 47.14 4939 4939 MS2 16/20 Linfeng_20120515_BRCA1_5.raw High AIGGGLSSVGGGSSTIK Unambiguous 6 6 IPI00300725.7;IPI00299145.9;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 603 2.04 0.00 0 7 100 2 724.39258 1447.77788 1.86 28.30 1585 1585 MS2 14/32 Linfeng_20120515_BRCA1_7.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 780 2.06 0.00 0 53 100 2 602.32391 1203.64055 3.07 36.28 2428 2428 MS2 12/18 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 442 2.08 0.00 0 45 100 2 632.35022 1263.69316 -0.96 46.32 4619 4619 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 458 2.09 0.00 0 39 100 2 632.35022 1263.69316 -0.96 45.94 4524 4524 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 685 2.10 0.00 0 37 100 2 602.32233 1203.63738 0.43 35.52 2738 2738 MS2 11/18 Linfeng_20120514_rIgG_2.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 737 2.12 0.00 0 17 100 2 602.32263 1203.63799 0.94 37.76 2908 2908 MS2 13/18 Linfeng_20120514_rIgG_3.raw High TAAENEFVTLK Unambiguous 9 9 IPI00942512.1;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00290857.2;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 505 2.12 0.00 0 47 100 2 611.82056 1222.63384 1.95 32.68 2216 2216 MS2 11/20 Linfeng_20120514_rIgG_3.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 641 2.16 0.00 0 61 100 2 602.32324 1203.63921 1.95 36.15 2412 2412 MS2 12/18 Linfeng_20120514_rIgG_4.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 783 2.17 0.00 0 51 100 2 602.32373 1203.64018 2.76 36.51 2450 2450 MS2 10/18 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 469 2.18 0.00 0 52 100 2 632.34998 1263.69267 -1.35 47.15 4212 4212 MS2 14/20 Linfeng_20120514_rIgG_9.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 449 2.19 0.00 0 51 100 2 632.34973 1263.69219 -1.74 45.90 4630 4630 MS2 17/20 Linfeng_20120515_BRCA1_5.raw High AIGGGLSSVGGGSSTIK Unambiguous 6 6 IPI00300725.7;IPI00299145.9;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 555 2.24 0.00 0 4 100 2 724.39148 1447.77568 0.35 28.63 1644 1644 MS2 18/32 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 477 2.27 0.00 0 41 100 2 632.34985 1263.69243 -1.54 46.04 4549 4549 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 707 2.31 0.00 0 57 100 2 602.32233 1203.63738 0.43 36.78 2457 2457 MS2 12/18 Linfeng_20120514_rIgG_7.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 458 2.32 0.00 0 54 100 2 632.34973 1263.69219 -1.74 46.58 4686 4686 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 2.36 0.00 0 37 100 2 632.35046 1263.69365 -0.58 46.86 3971 3971 MS2 16/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 492 2.37 0.00 0 60 100 2 632.35114 1263.69499 0.48 46.73 4431 4431 MS2 14/20 Linfeng_20120515_BRCA1_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 470 2.39 0.00 0 30 100 2 632.34888 1263.69048 -3.09 46.46 4770 4770 MS2 17/20 Linfeng_20120515_BRCA1_5.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 750 2.43 0.00 0 19 100 2 602.32220 1203.63713 0.23 36.53 2910 2910 MS2 14/18 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 473 2.46 0.00 0 46 100 2 632.35022 1263.69316 -0.96 46.78 3951 3951 MS2 17/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 464 2.48 0.00 0 36 100 2 632.35065 1263.69402 -0.29 47.09 3873 3873 MS2 17/20 Linfeng_20120515_BRCA1_7.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 723 2.49 0.00 0 14 100 2 602.32245 1203.63762 0.63 36.59 2611 2611 MS2 15/18 Linfeng_20120515_BRCA1_1.raw High AIGGGLSSVGGGSSTIK Unambiguous 6 6 IPI00300725.7;IPI00299145.9;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 527 2.50 0.00 0 0 100 2 724.39105 1447.77483 -0.24 29.31 1676 1676 MS2 16/32 Linfeng_20120515_BRCA1_7.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 472 2.53 0.00 0 15 68 2 632.35034 1263.69341 -0.77 48.85 4961 4961 MS2 18/20 Linfeng_20120514_rIgG_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 484 2.54 0.00 0 36 100 2 632.35083 1263.69438 0.00 47.21 4177 4177 MS2 15/20 Linfeng_20120514_rIgG_3.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 575 2.57 0.00 0 43 100 2 665.36664 1329.72600 -0.07 49.55 4833 4833 MS2 16/22 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 430 2.59 0.00 0 31 100 2 632.35077 1263.69426 -0.09 47.20 3985 3985 MS2 17/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 449 2.61 0.00 0 37 100 2 632.34973 1263.69219 -1.74 47.17 4828 4828 MS2 16/20 Linfeng_20120515_BRCA1_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 453 2.61 0.00 0 63 100 2 632.35052 1263.69377 -0.48 47.45 4110 4110 MS2 16/20 Linfeng_20120514_rIgG_10.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 514 2.61 0.00 0 4 1 2 665.36542 1329.72356 -1.90 49.02 5023 5023 MS2 14/22 Linfeng_20120515_BRCA1_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 506 2.66 0.00 0 46 100 2 632.35114 1263.69499 0.48 47.52 4063 4063 MS2 17/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 476 2.66 0.00 0 29 79 2 632.35144 1263.69560 0.97 48.87 4958 4958 MS2 18/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 473 2.70 0.00 0 30 100 2 632.35040 1263.69353 -0.67 47.22 4210 4210 MS2 16/20 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 492 2.70 0.00 0 40 100 2 632.35089 1263.69451 0.10 46.88 4113 4113 MS2 14/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 483 2.75 0.00 0 26 100 2 632.35126 1263.69524 0.68 45.46 4168 4168 MS2 18/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 447 2.78 0.00 0 48 100 2 632.35089 1263.69451 0.10 47.36 4023 4023 MS2 16/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 463 2.80 0.00 0 31 100 2 632.35107 1263.69487 0.39 46.86 3905 3905 MS2 17/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 488 2.87 0.00 0 81 100 2 632.35071 1263.69414 -0.19 46.97 4488 4488 MS2 16/20 Linfeng_20120515_BRCA1_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 448 2.87 0.00 0 36 100 2 632.35059 1263.69390 -0.38 46.91 4136 4136 MS2 16/20 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 451 2.87 0.00 0 44 100 2 632.35126 1263.69524 0.68 46.57 3752 3752 MS2 16/20 Linfeng_20120515_BRCA1_7.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 470 2.88 0.00 0 38 100 2 632.35089 1263.69451 0.10 47.03 4139 4139 MS2 16/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 459 2.88 0.00 0 53 100 2 632.35059 1263.69390 -0.38 46.42 3866 3866 MS2 17/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 480 2.88 0.00 0 48 100 2 632.35101 1263.69475 0.29 47.36 4243 4243 MS2 17/20 Linfeng_20120515_BRCA1_1.raw High AIGGGLSSVGGGSSTIK Unambiguous 6 6 IPI00300725.7;IPI00299145.9;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 557 2.91 0.00 0 24 100 2 724.39392 1447.78057 3.72 28.47 1754 1754 MS2 19/32 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 462 2.91 0.00 0 45 100 2 632.35052 1263.69377 -0.48 47.07 4019 4019 MS2 16/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 476 2.92 0.00 0 40 100 2 632.35077 1263.69426 -0.09 46.82 3907 3907 MS2 17/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 486 2.94 0.00 0 40 100 2 632.35040 1263.69353 -0.67 47.44 4228 4228 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 499 2.95 0.00 0 58 100 2 632.35107 1263.69487 0.39 47.47 4601 4601 MS2 15/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 2.95 0.00 0 15 75 2 632.34955 1263.69182 -2.03 48.84 4404 4404 MS2 18/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 461 2.95 0.00 0 23 100 2 632.35034 1263.69341 -0.77 48.82 4535 4535 MS2 18/20 Linfeng_20120514_rIgG_5.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 459 2.98 0.00 0 37 100 2 632.35046 1263.69365 -0.58 47.08 4177 4177 MS2 18/20 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 492 2.99 0.00 0 57 100 2 632.35083 1263.69438 0.00 47.56 4082 4082 MS2 17/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 477 3.00 0.00 0 41 100 2 632.35059 1263.69390 -0.38 47.37 4037 4037 MS2 18/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 449 3.01 0.00 0 34 100 2 632.35071 1263.69414 -0.19 47.28 4194 4194 MS2 15/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 3.01 0.00 0 25 100 2 632.35138 1263.69548 0.87 46.23 3756 3756 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 446 3.03 0.00 0 31 100 2 632.35193 1263.69658 1.74 46.21 4314 4314 MS2 17/20 Linfeng_20120514_rIgG_2.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 635 3.04 0.00 0 22 100 2 602.32306 1203.63884 1.65 36.75 2791 2791 MS2 15/18 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 474 3.04 0.00 0 28 100 2 632.35083 1263.69438 0.00 45.97 3839 3839 MS2 17/20 Linfeng_20120514_rIgG_5.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 413 3.05 0.00 0 28 100 2 632.35193 1263.69658 1.74 45.62 4198 4198 MS2 17/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 441 3.06 0.00 0 27 100 2 632.35101 1263.69475 0.29 45.93 3957 3957 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 518 3.10 0.00 0 20 63 2 632.35016 1263.69304 -1.06 48.84 4399 4399 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 3.11 0.00 0 27 100 2 632.35065 1263.69402 -0.29 45.86 3667 3667 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 438 3.13 0.00 0 26 100 2 632.35107 1263.69487 0.39 46.04 3711 3711 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 471 3.15 0.00 0 32 100 2 632.35181 1263.69634 1.55 46.54 4386 4386 MS2 16/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 432 3.16 0.00 0 19 100 2 632.34955 1263.69182 -2.03 48.82 4535 4535 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 419 3.20 0.00 0 33 100 2 632.35156 1263.69585 1.16 46.05 4283 4283 MS2 16/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 491 3.22 0.00 0 38 100 2 632.35114 1263.69499 0.48 46.67 4076 4076 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 422 3.22 0.00 0 24 100 2 632.35083 1263.69438 0.00 45.90 3141 3141 MS2 17/20 Linfeng_20120515_BRCA1_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 374 3.22 0.00 0 19 100 2 632.35010 1263.69292 -1.16 45.76 3935 3935 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 435 3.24 0.00 0 24 100 2 632.35028 1263.69328 -0.87 45.64 3920 3920 MS2 18/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 457 3.24 0.00 0 33 100 2 632.35156 1263.69585 1.16 46.60 3844 3844 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 446 3.29 0.00 0 30 81 2 632.34961 1263.69194 -1.93 48.82 4861 4861 MS2 18/20 Linfeng_20120514_rIgG_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 494 3.30 0.00 0 53 100 2 632.35089 1263.69451 0.10 47.25 4062 4062 MS2 16/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 472 3.30 0.00 0 26 100 2 632.35095 1263.69463 0.19 45.84 3132 3132 MS2 17/20 Linfeng_20120515_BRCA1_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 422 3.41 0.00 0 25 100 2 632.35077 1263.69426 -0.09 46.13 3994 3994 MS2 17/20 Linfeng_20120514_rIgG_3.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 510 3.72 0.00 0 7 3 2 665.36542 1329.72356 -1.90 49.00 4513 4513 MS2 19/22 Linfeng_20120514_rIgG_10.raw IPI00293665.9 "Keratin, type II cytoskeletal 6B" 9.57 1 0 5 274 530.97 9.57 5 172 294.69 7.62 4 102 564 60.0 8.00 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High TAAENEFVTLK Unambiguous 9 9 IPI00942512.1;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00290857.2;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 489 2.00 0.00 0 43 100 2 611.82062 1222.63396 2.05 32.62 2207 2207 MS2 11/20 Linfeng_20120514_rIgG_3.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 630 2.03 0.00 0 3 2 2 665.36591 1329.72453 -1.17 49.04 4475 4475 MS2 11/22 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 436 2.04 0.00 0 32 100 2 632.34998 1263.69267 -1.35 47.14 4939 4939 MS2 16/20 Linfeng_20120515_BRCA1_5.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 587 2.05 0.00 0 16 100 2 590.30475 1179.60222 1.48 31.10 1842 1842 MS2 11/18 Linfeng_20120515_BRCA1_9.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 535 2.05 0.00 0 4 100 2 590.30383 1179.60039 -0.07 27.69 1539 1539 MS2 11/18 Linfeng_20120514_rIgG_5.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 780 2.06 0.00 0 53 100 2 602.32391 1203.64055 3.07 36.28 2428 2428 MS2 12/18 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 442 2.08 0.00 0 45 100 2 632.35022 1263.69316 -0.96 46.32 4619 4619 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 458 2.09 0.00 0 39 100 2 632.35022 1263.69316 -0.96 45.94 4524 4524 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 685 2.10 0.00 0 37 100 2 602.32233 1203.63738 0.43 35.52 2738 2738 MS2 11/18 Linfeng_20120514_rIgG_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 547 2.12 0.00 0 11 100 2 590.30475 1179.60222 1.48 30.48 1730 1730 MS2 12/18 Linfeng_20120515_BRCA1_4.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 737 2.12 0.00 0 17 100 2 602.32263 1203.63799 0.94 37.76 2908 2908 MS2 13/18 Linfeng_20120514_rIgG_3.raw High TAAENEFVTLK Unambiguous 9 9 IPI00942512.1;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00290857.2;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 505 2.12 0.00 0 47 100 2 611.82056 1222.63384 1.95 32.68 2216 2216 MS2 11/20 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 626 2.15 0.00 0 11 100 2 590.30408 1179.60088 0.34 29.76 1741 1741 MS2 12/18 Linfeng_20120514_rIgG_6.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 641 2.16 0.00 0 61 100 2 602.32324 1203.63921 1.95 36.15 2412 2412 MS2 12/18 Linfeng_20120514_rIgG_4.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 783 2.17 0.00 0 51 100 2 602.32373 1203.64018 2.76 36.51 2450 2450 MS2 10/18 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 469 2.18 0.00 0 52 100 2 632.34998 1263.69267 -1.35 47.15 4212 4212 MS2 14/20 Linfeng_20120514_rIgG_9.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 537 2.19 0.00 0 3 100 2 590.30426 1179.60124 0.65 27.75 1652 1652 MS2 14/18 Linfeng_20120514_rIgG_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 449 2.19 0.00 0 51 100 2 632.34973 1263.69219 -1.74 45.90 4630 4630 MS2 17/20 Linfeng_20120515_BRCA1_5.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 540 2.19 0.00 0 8 100 2 590.30426 1179.60124 0.65 30.52 1793 1793 MS2 11/18 Linfeng_20120515_BRCA1_9.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 556 2.26 0.00 0 15 100 2 590.30383 1179.60039 -0.07 27.69 1559 1559 MS2 11/18 Linfeng_20120514_rIgG_6.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 477 2.27 0.00 0 41 100 2 632.34985 1263.69243 -1.54 46.04 4549 4549 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 572 2.27 0.00 0 4 100 2 590.30432 1179.60137 0.76 31.05 1798 1798 MS2 12/18 Linfeng_20120514_rIgG_7.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 569 2.27 0.00 0 7 100 2 590.30469 1179.60210 1.38 30.97 1830 1830 MS2 12/18 Linfeng_20120515_BRCA1_9.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 707 2.31 0.00 0 57 100 2 602.32233 1203.63738 0.43 36.78 2457 2457 MS2 12/18 Linfeng_20120514_rIgG_7.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 551 2.31 0.00 0 6 100 2 590.30469 1179.60210 1.38 28.03 1694 1694 MS2 11/18 Linfeng_20120515_BRCA1_8.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 583 2.31 0.00 0 21 100 2 590.30438 1179.60149 0.86 29.42 1797 1797 MS2 12/18 Linfeng_20120514_rIgG_8.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 599 2.31 0.00 0 25 100 2 590.30389 1179.60051 0.03 29.77 1666 1666 MS2 14/18 Linfeng_20120515_BRCA1_6.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 458 2.32 0.00 0 54 100 2 632.34973 1263.69219 -1.74 46.58 4686 4686 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 2.36 0.00 0 37 100 2 632.35046 1263.69365 -0.58 46.86 3971 3971 MS2 16/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 492 2.37 0.00 0 60 100 2 632.35114 1263.69499 0.48 46.73 4431 4431 MS2 14/20 Linfeng_20120515_BRCA1_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 470 2.39 0.00 0 30 100 2 632.34888 1263.69048 -3.09 46.46 4770 4770 MS2 17/20 Linfeng_20120515_BRCA1_5.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 480 2.39 0.00 0 9 100 2 590.30347 1179.59966 -0.69 28.06 1547 1547 MS2 11/18 Linfeng_20120515_BRCA1_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 592 2.39 0.00 0 12 100 2 590.30432 1179.60137 0.76 30.65 1804 1804 MS2 13/18 Linfeng_20120515_BRCA1_9.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 481 2.40 0.00 0 12 100 2 590.30310 1179.59892 -1.31 28.23 1566 1566 MS2 11/18 Linfeng_20120515_BRCA1_6.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 601 2.41 0.00 0 6 100 2 590.30444 1179.60161 0.97 29.39 1650 1650 MS2 13/18 Linfeng_20120515_BRCA1_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 595 2.42 0.00 0 13 100 2 590.30389 1179.60051 0.03 27.71 1627 1627 MS2 12/18 Linfeng_20120514_rIgG_10.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 527 2.43 0.00 0 3 100 2 590.30383 1179.60039 -0.07 28.21 1612 1612 MS2 12/18 Linfeng_20120515_BRCA1_9.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 750 2.43 0.00 0 19 100 2 602.32220 1203.63713 0.23 36.53 2910 2910 MS2 14/18 Linfeng_20120514_rIgG_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 606 2.44 0.00 0 14 100 2 590.30383 1179.60039 -0.07 27.83 1553 1553 MS2 15/18 Linfeng_20120514_rIgG_7.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 553 2.45 0.00 0 15 100 2 590.30432 1179.60137 0.76 29.06 1811 1811 MS2 13/18 Linfeng_20120515_BRCA1_8.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 543 2.46 0.00 0 4 100 2 590.30511 1179.60295 2.10 31.01 1864 1864 MS2 14/18 Linfeng_20120514_rIgG_6.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 551 2.46 0.00 0 19 100 2 590.30499 1179.60271 1.90 30.96 1954 1954 MS2 14/18 Linfeng_20120514_rIgG_9.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 520 2.46 0.00 0 9 100 2 590.30524 1179.60320 2.31 30.79 1805 1805 MS2 14/18 Linfeng_20120514_rIgG_5.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 473 2.46 0.00 0 46 100 2 632.35022 1263.69316 -0.96 46.78 3951 3951 MS2 17/20 Linfeng_20120514_rIgG_10.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 558 2.46 0.00 0 13 100 2 590.30524 1179.60320 2.31 31.18 1985 1985 MS2 16/18 Linfeng_20120514_rIgG_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 464 2.48 0.00 0 36 100 2 632.35065 1263.69402 -0.29 47.09 3873 3873 MS2 17/20 Linfeng_20120515_BRCA1_7.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 723 2.49 0.00 0 14 100 2 602.32245 1203.63762 0.63 36.59 2611 2611 MS2 15/18 Linfeng_20120515_BRCA1_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 608 2.49 0.00 0 17 100 2 590.30469 1179.60210 1.38 30.24 1892 1892 MS2 13/18 Linfeng_20120515_BRCA1_5.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 551 2.50 0.00 0 14 100 2 590.30463 1179.60198 1.28 29.64 1670 1670 MS2 12/18 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 472 2.53 0.00 0 15 68 2 632.35034 1263.69341 -0.77 48.85 4961 4961 MS2 18/20 Linfeng_20120514_rIgG_8.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 593 2.54 0.00 0 19 100 2 590.30408 1179.60088 0.34 27.66 1550 1550 MS2 14/18 Linfeng_20120514_rIgG_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 587 2.54 0.00 0 0 100 2 590.30396 1179.60063 0.14 28.70 1614 1614 MS2 11/18 Linfeng_20120514_rIgG_5.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 546 2.54 0.00 0 4 100 2 590.30475 1179.60222 1.48 30.43 1761 1761 MS2 12/18 Linfeng_20120514_rIgG_5.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 561 2.54 0.00 0 2 100 2 590.30450 1179.60173 1.07 30.90 1782 1782 MS2 14/18 Linfeng_20120514_rIgG_7.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 484 2.54 0.00 0 36 100 2 632.35083 1263.69438 0.00 47.21 4177 4177 MS2 15/20 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 523 2.55 0.00 0 13 100 2 590.30530 1179.60332 2.41 31.21 1796 1796 MS2 13/18 Linfeng_20120515_BRCA1_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 637 2.55 0.00 0 6 100 2 590.30402 1179.60076 0.24 27.73 1641 1641 MS2 14/18 Linfeng_20120514_rIgG_9.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 581 2.57 0.00 0 6 100 2 590.30426 1179.60124 0.65 30.78 1733 1733 MS2 13/18 Linfeng_20120515_BRCA1_6.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 575 2.57 0.00 0 43 100 2 665.36664 1329.72600 -0.07 49.55 4833 4833 MS2 16/22 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 430 2.59 0.00 0 31 100 2 632.35077 1263.69426 -0.09 47.20 3985 3985 MS2 17/20 Linfeng_20120515_BRCA1_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 568 2.60 0.00 0 13 100 2 590.30469 1179.60210 1.38 30.13 1882 1882 MS2 12/18 Linfeng_20120515_BRCA1_5.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 449 2.61 0.00 0 37 100 2 632.34973 1263.69219 -1.74 47.17 4828 4828 MS2 16/20 Linfeng_20120515_BRCA1_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 453 2.61 0.00 0 63 100 2 632.35052 1263.69377 -0.48 47.45 4110 4110 MS2 16/20 Linfeng_20120514_rIgG_10.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 531 2.61 0.00 0 12 100 2 590.30487 1179.60246 1.69 31.21 1766 1766 MS2 13/18 Linfeng_20120515_BRCA1_6.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 514 2.61 0.00 0 4 1 2 665.36542 1329.72356 -1.90 49.02 5023 5023 MS2 14/22 Linfeng_20120515_BRCA1_10.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 558 2.63 0.00 0 4 100 2 590.30469 1179.60210 1.38 29.71 1717 1717 MS2 13/18 Linfeng_20120514_rIgG_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 514 2.63 0.00 0 9 100 2 590.30524 1179.60320 2.31 31.07 1780 1780 MS2 14/18 Linfeng_20120515_BRCA1_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 568 2.64 0.00 0 9 100 2 590.30450 1179.60173 1.07 30.33 1880 1880 MS2 12/18 Linfeng_20120514_rIgG_9.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 625 2.65 0.00 0 4 100 2 590.30414 1179.60100 0.45 29.22 1690 1690 MS2 14/18 Linfeng_20120515_BRCA1_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 554 2.65 0.00 0 4 100 2 590.30396 1179.60063 0.14 27.98 1659 1659 MS2 14/18 Linfeng_20120515_BRCA1_10.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 539 2.66 0.00 0 26 100 2 590.30511 1179.60295 2.10 31.22 1982 1982 MS2 13/18 Linfeng_20120514_rIgG_9.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 506 2.66 0.00 0 46 100 2 632.35114 1263.69499 0.48 47.52 4063 4063 MS2 17/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 476 2.66 0.00 0 29 79 2 632.35144 1263.69560 0.97 48.87 4958 4958 MS2 18/20 Linfeng_20120514_rIgG_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 558 2.68 0.00 0 22 100 2 590.30505 1179.60283 2.00 29.93 1860 1860 MS2 13/18 Linfeng_20120515_BRCA1_5.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 473 2.70 0.00 0 30 100 2 632.35040 1263.69353 -0.67 47.22 4210 4210 MS2 16/20 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 492 2.70 0.00 0 40 100 2 632.35089 1263.69451 0.10 46.88 4113 4113 MS2 14/20 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 574 2.71 0.00 0 17 100 2 590.30444 1179.60161 0.97 29.47 1712 1712 MS2 13/18 Linfeng_20120514_rIgG_6.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 559 2.71 0.00 0 7 100 2 590.30414 1179.60100 0.45 29.09 1611 1611 MS2 14/18 Linfeng_20120515_BRCA1_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 606 2.71 0.00 0 20 100 2 590.30389 1179.60051 0.03 29.53 1676 1676 MS2 14/18 Linfeng_20120514_rIgG_7.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 530 2.72 0.00 0 7 100 2 590.30383 1179.60039 -0.07 28.33 1712 1712 MS2 12/18 Linfeng_20120515_BRCA1_5.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 563 2.72 0.00 0 15 100 2 590.30444 1179.60161 0.97 29.38 1703 1703 MS2 15/18 Linfeng_20120514_rIgG_6.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 560 2.73 0.00 0 17 100 2 590.30450 1179.60173 1.07 29.35 1809 1809 MS2 15/18 Linfeng_20120515_BRCA1_5.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 663 2.73 0.00 0 21 100 2 590.30389 1179.60051 0.03 27.74 1556 1556 MS2 14/18 Linfeng_20120515_BRCA1_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 623 2.74 0.00 0 6 100 2 590.30402 1179.60076 0.24 28.74 1732 1732 MS2 13/18 Linfeng_20120514_rIgG_9.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 468 2.74 0.00 0 4 100 2 590.30328 1179.59929 -1.00 28.02 1558 1558 MS2 13/18 Linfeng_20120515_BRCA1_7.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 533 2.74 0.00 0 9 100 2 590.30420 1179.60112 0.55 29.75 1735 1735 MS2 12/18 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 483 2.75 0.00 0 26 100 2 632.35126 1263.69524 0.68 45.46 4168 4168 MS2 18/20 Linfeng_20120514_rIgG_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 581 2.76 0.00 0 4 100 2 590.30469 1179.60210 1.38 29.77 1722 1722 MS2 14/18 Linfeng_20120514_rIgG_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 532 2.76 0.00 0 20 100 2 590.30499 1179.60271 1.90 30.98 1956 1956 MS2 14/18 Linfeng_20120514_rIgG_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 447 2.78 0.00 0 48 100 2 632.35089 1263.69451 0.10 47.36 4023 4023 MS2 16/20 Linfeng_20120515_BRCA1_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 570 2.78 0.00 0 12 100 2 590.30542 1179.60356 2.62 31.18 1885 1885 MS2 15/18 Linfeng_20120514_rIgG_6.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 463 2.80 0.00 0 31 100 2 632.35107 1263.69487 0.39 46.86 3905 3905 MS2 17/20 Linfeng_20120515_BRCA1_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 561 2.81 0.00 0 26 100 2 590.30493 1179.60259 1.79 31.83 2173 2173 MS2 14/18 Linfeng_20120514_rIgG_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 578 2.86 0.00 0 6 100 2 590.30414 1179.60100 0.45 28.76 1741 1741 MS2 13/18 Linfeng_20120514_rIgG_8.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 517 2.86 0.00 0 5 100 2 590.30499 1179.60271 1.90 30.58 1781 1781 MS2 15/18 Linfeng_20120514_rIgG_5.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 488 2.87 0.00 0 81 100 2 632.35071 1263.69414 -0.19 46.97 4488 4488 MS2 16/20 Linfeng_20120515_BRCA1_10.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 543 2.87 0.00 0 23 100 2 590.30487 1179.60246 1.69 31.00 1959 1959 MS2 13/18 Linfeng_20120514_rIgG_9.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 448 2.87 0.00 0 36 100 2 632.35059 1263.69390 -0.38 46.91 4136 4136 MS2 16/20 Linfeng_20120515_BRCA1_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 550 2.87 0.00 0 4 100 2 590.30542 1179.60356 2.62 30.98 1870 1870 MS2 15/18 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 451 2.87 0.00 0 44 100 2 632.35126 1263.69524 0.68 46.57 3752 3752 MS2 16/20 Linfeng_20120515_BRCA1_7.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 470 2.88 0.00 0 38 100 2 632.35089 1263.69451 0.10 47.03 4139 4139 MS2 16/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 459 2.88 0.00 0 53 100 2 632.35059 1263.69390 -0.38 46.42 3866 3866 MS2 17/20 Linfeng_20120514_rIgG_10.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 583 2.88 0.00 0 6 100 2 590.30438 1179.60149 0.86 30.01 1854 1854 MS2 14/18 Linfeng_20120515_BRCA1_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 480 2.88 0.00 0 48 100 2 632.35101 1263.69475 0.29 47.36 4243 4243 MS2 17/20 Linfeng_20120515_BRCA1_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 551 2.89 0.00 0 4 100 2 590.30475 1179.60222 1.48 30.63 1741 1741 MS2 14/18 Linfeng_20120515_BRCA1_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 577 2.90 0.00 0 16 100 2 590.30560 1179.60393 2.93 30.82 1935 1935 MS2 15/18 Linfeng_20120514_rIgG_9.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 556 2.90 0.00 0 11 100 2 590.30457 1179.60185 1.17 29.17 1759 1759 MS2 14/18 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 462 2.91 0.00 0 45 100 2 632.35052 1263.69377 -0.48 47.07 4019 4019 MS2 16/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 476 2.92 0.00 0 40 100 2 632.35077 1263.69426 -0.09 46.82 3907 3907 MS2 17/20 Linfeng_20120514_rIgG_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 567 2.92 0.00 0 3 100 2 590.30402 1179.60076 0.24 28.91 1645 1645 MS2 16/18 Linfeng_20120515_BRCA1_7.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 486 2.94 0.00 0 40 100 2 632.35040 1263.69353 -0.67 47.44 4228 4228 MS2 17/20 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 561 2.95 0.00 0 5 100 2 590.30524 1179.60320 2.31 30.70 1831 1831 MS2 15/18 Linfeng_20120514_rIgG_6.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 499 2.95 0.00 0 58 100 2 632.35107 1263.69487 0.39 47.47 4601 4601 MS2 15/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 2.95 0.00 0 15 75 2 632.34955 1263.69182 -2.03 48.84 4404 4404 MS2 18/20 Linfeng_20120514_rIgG_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 576 2.95 0.00 0 12 100 2 590.30432 1179.60137 0.76 30.19 1843 1843 MS2 15/18 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 461 2.95 0.00 0 23 100 2 632.35034 1263.69341 -0.77 48.82 4535 4535 MS2 18/20 Linfeng_20120514_rIgG_5.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 582 2.96 0.00 0 5 100 2 590.30481 1179.60234 1.59 31.00 1749 1749 MS2 15/18 Linfeng_20120515_BRCA1_6.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 540 2.97 0.00 0 8 100 2 590.30481 1179.60234 1.59 30.97 1789 1789 MS2 14/18 Linfeng_20120514_rIgG_7.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 588 2.98 0.00 0 6 100 2 590.30463 1179.60198 1.28 30.25 1792 1792 MS2 16/18 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 459 2.98 0.00 0 37 100 2 632.35046 1263.69365 -0.58 47.08 4177 4177 MS2 18/20 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 492 2.99 0.00 0 57 100 2 632.35083 1263.69438 0.00 47.56 4082 4082 MS2 17/20 Linfeng_20120514_rIgG_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 498 3.00 0.00 0 44 100 2 590.30475 1179.60222 1.48 27.53 1635 1635 MS2 13/18 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 477 3.00 0.00 0 41 100 2 632.35059 1263.69390 -0.38 47.37 4037 4037 MS2 18/20 Linfeng_20120514_rIgG_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 529 3.01 0.00 0 7 100 2 590.30518 1179.60307 2.21 30.97 1860 1860 MS2 13/18 Linfeng_20120514_rIgG_6.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 610 3.01 0.00 0 44 100 2 590.30377 1179.60027 -0.17 27.30 1626 1626 MS2 15/18 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 449 3.01 0.00 0 34 100 2 632.35071 1263.69414 -0.19 47.28 4194 4194 MS2 15/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 3.01 0.00 0 25 100 2 632.35138 1263.69548 0.87 46.23 3756 3756 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 636 3.02 0.00 0 10 100 2 590.30566 1179.60405 3.04 31.17 2099 2099 MS2 15/18 Linfeng_20120515_BRCA1_8.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 602 3.03 0.00 0 15 100 2 590.30365 1179.60002 -0.38 27.46 1591 1591 MS2 13/18 Linfeng_20120514_rIgG_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 446 3.03 0.00 0 31 100 2 632.35193 1263.69658 1.74 46.21 4314 4314 MS2 17/20 Linfeng_20120514_rIgG_2.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 635 3.04 0.00 0 22 100 2 602.32306 1203.63884 1.65 36.75 2791 2791 MS2 15/18 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 474 3.04 0.00 0 28 100 2 632.35083 1263.69438 0.00 45.97 3839 3839 MS2 17/20 Linfeng_20120514_rIgG_5.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 559 3.04 0.00 0 7 100 2 590.30499 1179.60271 1.90 30.54 1776 1776 MS2 15/18 Linfeng_20120514_rIgG_5.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 601 3.05 0.00 0 14 100 2 590.30383 1179.60039 -0.07 29.93 1718 1718 MS2 14/18 Linfeng_20120515_BRCA1_7.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 509 3.05 0.00 0 4 100 2 590.30518 1179.60307 2.21 30.78 1812 1812 MS2 15/18 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 413 3.05 0.00 0 28 100 2 632.35193 1263.69658 1.74 45.62 4198 4198 MS2 17/20 Linfeng_20120514_rIgG_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 543 3.06 0.00 0 9 100 2 590.30505 1179.60283 2.00 30.83 1933 1933 MS2 13/18 Linfeng_20120514_rIgG_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 441 3.06 0.00 0 27 100 2 632.35101 1263.69475 0.29 45.93 3957 3957 MS2 17/20 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 566 3.07 0.00 0 8 100 2 590.30432 1179.60137 0.76 29.11 1753 1753 MS2 14/18 Linfeng_20120514_rIgG_10.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 559 3.07 0.00 0 6 100 2 590.30530 1179.60332 2.41 30.50 1926 1926 MS2 16/18 Linfeng_20120515_BRCA1_5.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 631 3.07 0.00 0 5 100 2 590.30371 1179.60015 -0.28 28.85 1628 1628 MS2 16/18 Linfeng_20120514_rIgG_7.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 541 3.07 0.00 0 15 100 2 590.30499 1179.60271 1.90 30.90 1945 1945 MS2 14/18 Linfeng_20120514_rIgG_9.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 535 3.09 0.00 0 14 100 2 590.30511 1179.60295 2.10 30.78 1924 1924 MS2 15/18 Linfeng_20120514_rIgG_8.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 561 3.09 0.00 0 4 100 2 590.30493 1179.60259 1.79 30.39 1776 1776 MS2 15/18 Linfeng_20120514_rIgG_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 555 3.10 0.00 0 5 100 2 590.30505 1179.60283 2.00 31.18 1844 1844 MS2 15/18 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 518 3.10 0.00 0 20 63 2 632.35016 1263.69304 -1.06 48.84 4399 4399 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 544 3.10 0.00 0 4 100 2 590.30475 1179.60222 1.48 31.19 1819 1819 MS2 15/18 Linfeng_20120515_BRCA1_7.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 3.11 0.00 0 27 100 2 632.35065 1263.69402 -0.29 45.86 3667 3667 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 594 3.12 0.00 0 3 100 2 590.30402 1179.60076 0.24 28.99 1672 1672 MS2 15/18 Linfeng_20120515_BRCA1_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 628 3.12 0.00 0 2 100 2 590.30408 1179.60088 0.34 28.43 1625 1625 MS2 15/18 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 438 3.13 0.00 0 26 100 2 632.35107 1263.69487 0.39 46.04 3711 3711 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 564 3.13 0.00 0 5 100 2 590.30475 1179.60222 1.48 30.57 1819 1819 MS2 16/18 Linfeng_20120515_BRCA1_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 616 3.13 0.00 0 14 100 2 590.30432 1179.60137 0.76 28.97 1667 1667 MS2 15/18 Linfeng_20120514_rIgG_6.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 545 3.13 0.00 0 6 100 2 590.30505 1179.60283 2.00 30.84 1844 1844 MS2 14/18 Linfeng_20120514_rIgG_6.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 564 3.13 0.00 0 8 100 2 590.30450 1179.60173 1.07 30.93 1744 1744 MS2 14/18 Linfeng_20120515_BRCA1_6.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 530 3.14 0.00 0 3 100 2 590.30487 1179.60246 1.69 30.48 1807 1807 MS2 16/18 Linfeng_20120514_rIgG_6.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 589 3.14 0.00 0 9 100 2 590.30420 1179.60112 0.55 29.56 1707 1707 MS2 16/18 Linfeng_20120514_rIgG_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 632 3.14 0.00 0 13 100 2 590.30408 1179.60088 0.34 29.86 1684 1684 MS2 14/18 Linfeng_20120515_BRCA1_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 536 3.14 0.00 0 2 100 2 590.30493 1179.60259 1.79 31.01 1829 1829 MS2 14/18 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 471 3.15 0.00 0 32 100 2 632.35181 1263.69634 1.55 46.54 4386 4386 MS2 16/20 Linfeng_20120514_rIgG_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 552 3.16 0.00 0 5 100 2 590.30420 1179.60112 0.55 29.37 1705 1705 MS2 15/18 Linfeng_20120515_BRCA1_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 525 3.16 0.00 0 1 100 2 590.30414 1179.60100 0.45 28.83 1660 1660 MS2 15/18 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 432 3.16 0.00 0 19 100 2 632.34955 1263.69182 -2.03 48.82 4535 4535 MS2 17/20 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 550 3.16 0.00 0 7 100 2 590.30463 1179.60198 1.28 31.17 1762 1762 MS2 15/18 Linfeng_20120515_BRCA1_6.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 622 3.18 0.00 0 4 100 2 590.30402 1179.60076 0.24 29.09 1680 1680 MS2 14/18 Linfeng_20120515_BRCA1_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 530 3.18 0.00 0 8 100 2 590.30444 1179.60161 0.97 29.63 1726 1726 MS2 13/18 Linfeng_20120515_BRCA1_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 539 3.19 0.00 0 6 100 2 590.30450 1179.60173 1.07 30.87 1740 1740 MS2 14/18 Linfeng_20120515_BRCA1_6.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 550 3.19 0.00 0 5 100 2 590.30450 1179.60173 1.07 30.94 1795 1795 MS2 14/18 Linfeng_20120515_BRCA1_7.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 419 3.20 0.00 0 33 100 2 632.35156 1263.69585 1.16 46.05 4283 4283 MS2 16/20 Linfeng_20120514_rIgG_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 571 3.21 0.00 0 3 100 2 590.30371 1179.60015 -0.28 27.80 1562 1562 MS2 15/18 Linfeng_20120515_BRCA1_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 575 3.21 0.00 0 8 100 2 590.30420 1179.60112 0.55 29.04 1745 1745 MS2 15/18 Linfeng_20120514_rIgG_10.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 624 3.22 0.00 0 5 100 2 590.30389 1179.60051 0.03 28.70 1710 1710 MS2 16/18 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 491 3.22 0.00 0 38 100 2 632.35114 1263.69499 0.48 46.67 4076 4076 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 422 3.22 0.00 0 24 100 2 632.35083 1263.69438 0.00 45.90 3141 3141 MS2 17/20 Linfeng_20120515_BRCA1_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 557 3.22 0.00 0 16 100 2 590.30518 1179.60307 2.21 30.86 1940 1940 MS2 14/18 Linfeng_20120514_rIgG_9.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 374 3.22 0.00 0 19 100 2 632.35010 1263.69292 -1.16 45.76 3935 3935 MS2 17/20 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 520 3.23 0.00 0 3 100 2 590.30511 1179.60295 2.10 30.54 1813 1813 MS2 15/18 Linfeng_20120514_rIgG_6.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 644 3.23 0.00 0 3 100 2 590.30408 1179.60088 0.34 29.13 1628 1628 MS2 14/18 Linfeng_20120515_BRCA1_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 590 3.23 0.00 0 16 100 2 590.30475 1179.60222 1.48 30.44 1893 1893 MS2 15/18 Linfeng_20120514_rIgG_9.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 532 3.23 0.00 0 5 100 2 590.30524 1179.60320 2.31 30.91 2005 2005 MS2 16/18 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 435 3.24 0.00 0 24 100 2 632.35028 1263.69328 -0.87 45.64 3920 3920 MS2 18/20 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 579 3.24 0.00 0 11 100 2 590.30487 1179.60246 1.69 30.59 1906 1906 MS2 15/18 Linfeng_20120514_rIgG_9.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 457 3.24 0.00 0 33 100 2 632.35156 1263.69585 1.16 46.60 3844 3844 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 549 3.24 0.00 0 11 100 2 590.30371 1179.60015 -0.28 29.27 1659 1659 MS2 14/18 Linfeng_20120514_rIgG_7.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 589 3.25 0.00 0 4 100 2 590.30383 1179.60039 -0.07 29.00 1743 1743 MS2 14/18 Linfeng_20120515_BRCA1_10.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 563 3.25 0.00 0 28 100 2 590.30585 1179.60442 3.35 31.04 1991 1991 MS2 16/18 Linfeng_20120515_BRCA1_10.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 538 3.26 0.00 0 5 100 2 590.30524 1179.60320 2.31 29.96 1904 1904 MS2 15/18 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 446 3.29 0.00 0 30 81 2 632.34961 1263.69194 -1.93 48.82 4861 4861 MS2 18/20 Linfeng_20120514_rIgG_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 564 3.29 0.00 0 7 100 2 590.30511 1179.60295 2.10 30.92 1947 1947 MS2 16/18 Linfeng_20120514_rIgG_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 494 3.30 0.00 0 53 100 2 632.35089 1263.69451 0.10 47.25 4062 4062 MS2 16/20 Linfeng_20120514_rIgG_10.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 550 3.30 0.00 0 1 100 2 590.30530 1179.60332 2.41 31.23 1850 1850 MS2 16/18 Linfeng_20120514_rIgG_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 556 3.30 0.00 0 3 100 2 590.30579 1179.60430 3.24 31.01 2015 2015 MS2 14/18 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 611 3.30 0.00 0 7 100 2 590.30432 1179.60137 0.76 29.57 1721 1721 MS2 17/18 Linfeng_20120515_BRCA1_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 560 3.30 0.00 0 5 100 2 590.30554 1179.60381 2.83 30.96 1986 1986 MS2 16/18 Linfeng_20120515_BRCA1_5.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 527 3.30 0.00 0 1 100 2 590.30542 1179.60356 2.62 30.71 1982 1982 MS2 15/18 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 472 3.30 0.00 0 26 100 2 632.35095 1263.69463 0.19 45.84 3132 3132 MS2 17/20 Linfeng_20120515_BRCA1_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 563 3.32 0.00 0 10 100 2 590.30475 1179.60222 1.48 30.55 1901 1901 MS2 15/18 Linfeng_20120514_rIgG_9.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 576 3.32 0.00 0 24 100 2 590.30548 1179.60369 2.72 31.05 1965 1965 MS2 15/18 Linfeng_20120514_rIgG_8.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 577 3.33 0.00 0 4 100 2 590.30463 1179.60198 1.28 30.36 1899 1899 MS2 16/18 Linfeng_20120514_rIgG_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 552 3.34 0.00 0 3 100 2 590.30530 1179.60332 2.41 31.09 2024 2024 MS2 16/18 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 590 3.34 0.00 0 6 100 2 590.30481 1179.60234 1.59 31.01 1793 1793 MS2 16/18 Linfeng_20120514_rIgG_7.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 567 3.35 0.00 0 6 100 2 590.30420 1179.60112 0.55 28.72 1642 1642 MS2 14/18 Linfeng_20120514_rIgG_6.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 637 3.36 0.00 0 2 100 2 590.30408 1179.60088 0.34 28.73 1652 1652 MS2 14/18 Linfeng_20120515_BRCA1_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 535 3.36 0.00 0 5 100 2 590.30499 1179.60271 1.90 30.31 1898 1898 MS2 16/18 Linfeng_20120515_BRCA1_10.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 550 3.36 0.00 0 4 100 2 590.30499 1179.60271 1.90 30.22 1930 1930 MS2 15/18 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 566 3.37 0.00 0 2 92 2 590.30420 1179.60112 0.55 28.37 1596 1596 MS2 15/18 Linfeng_20120515_BRCA1_7.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 533 3.38 0.00 0 3 100 2 590.30487 1179.60246 1.69 30.88 1857 1857 MS2 16/18 Linfeng_20120515_BRCA1_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 549 3.38 0.00 0 5 100 2 590.30536 1179.60344 2.52 30.94 1965 1965 MS2 16/18 Linfeng_20120514_rIgG_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 555 3.38 0.00 0 4 100 2 590.30505 1179.60283 2.00 30.26 1935 1935 MS2 15/18 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 524 3.39 0.00 0 8 100 2 590.30518 1179.60307 2.21 29.76 1885 1885 MS2 16/18 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 560 3.39 0.00 0 9 100 2 590.30548 1179.60369 2.72 30.90 1821 1821 MS2 15/18 Linfeng_20120514_rIgG_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 565 3.39 0.00 0 7 100 2 590.30444 1179.60161 0.97 28.95 1735 1735 MS2 15/18 Linfeng_20120514_rIgG_10.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 546 3.40 0.00 0 4 100 2 590.30554 1179.60381 2.83 30.86 1999 1999 MS2 16/18 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 422 3.41 0.00 0 25 100 2 632.35077 1263.69426 -0.09 46.13 3994 3994 MS2 17/20 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 540 3.42 0.00 0 5 100 2 590.30499 1179.60271 1.90 31.00 1971 1971 MS2 16/18 Linfeng_20120514_rIgG_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 588 3.42 0.00 0 1 100 2 590.30408 1179.60088 0.34 28.59 1640 1640 MS2 15/18 Linfeng_20120515_BRCA1_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 560 3.43 0.00 0 1 100 2 590.30499 1179.60271 1.90 29.88 1840 1840 MS2 16/18 Linfeng_20120514_rIgG_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 586 3.44 0.00 0 7 100 2 590.30450 1179.60173 1.07 28.98 1739 1739 MS2 16/18 Linfeng_20120514_rIgG_10.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 561 3.45 0.00 0 6 100 2 590.30554 1179.60381 2.83 31.07 1834 1834 MS2 14/18 Linfeng_20120514_rIgG_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 564 3.45 0.00 0 1 100 2 590.30505 1179.60283 2.00 30.06 1861 1861 MS2 15/18 Linfeng_20120514_rIgG_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 627 3.46 0.00 0 5 100 2 590.30414 1179.60100 0.45 29.61 1904 1904 MS2 17/18 Linfeng_20120514_rIgG_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 621 3.46 0.00 0 3 100 2 590.30414 1179.60100 0.45 28.86 1810 1810 MS2 16/18 Linfeng_20120514_rIgG_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 542 3.46 0.00 0 7 100 2 590.30499 1179.60271 1.90 30.56 1935 1935 MS2 17/18 Linfeng_20120515_BRCA1_5.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 556 3.46 0.00 0 3 100 2 590.30487 1179.60246 1.69 30.72 1835 1835 MS2 15/18 Linfeng_20120515_BRCA1_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 618 3.46 0.00 0 3 100 2 590.30402 1179.60076 0.24 28.92 1820 1820 MS2 17/18 Linfeng_20120514_rIgG_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 570 3.48 0.00 0 4 100 2 590.30469 1179.60210 1.38 30.64 1906 1906 MS2 15/18 Linfeng_20120514_rIgG_8.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 557 3.48 0.00 0 2 100 2 590.30420 1179.60112 0.55 28.72 1629 1629 MS2 15/18 Linfeng_20120515_BRCA1_7.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 577 3.49 0.00 0 4 100 2 590.30450 1179.60173 1.07 29.21 1773 1773 MS2 17/18 Linfeng_20120514_rIgG_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 590 3.49 0.00 0 5 100 2 590.30469 1179.60210 1.38 29.16 1768 1768 MS2 17/18 Linfeng_20120514_rIgG_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 561 3.49 0.00 0 6 100 2 590.30499 1179.60271 1.90 30.43 1883 1883 MS2 16/18 Linfeng_20120514_rIgG_8.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 604 3.49 0.00 0 1 100 2 590.30408 1179.60088 0.34 30.91 2053 2053 MS2 14/18 Linfeng_20120514_rIgG_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 525 3.49 0.00 0 4 100 2 590.30511 1179.60295 2.10 30.18 1927 1927 MS2 15/18 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 567 3.50 0.00 0 5 100 2 590.30469 1179.60210 1.38 30.95 2059 2059 MS2 16/18 Linfeng_20120514_rIgG_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 553 3.51 0.00 0 9 100 2 590.30493 1179.60259 1.79 30.13 1781 1781 MS2 17/18 Linfeng_20120515_BRCA1_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 535 3.51 0.00 0 4 100 2 590.30499 1179.60271 1.90 30.47 1914 1914 MS2 16/18 Linfeng_20120514_rIgG_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 550 3.51 0.00 0 3 100 2 590.30487 1179.60246 1.69 30.38 1801 1801 MS2 16/18 Linfeng_20120515_BRCA1_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 538 3.52 0.00 0 2 100 2 590.30511 1179.60295 2.10 30.39 1951 1951 MS2 16/18 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 556 3.52 0.00 0 2 100 2 590.30475 1179.60222 1.48 31.04 1803 1803 MS2 17/18 Linfeng_20120515_BRCA1_7.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 559 3.52 0.00 0 8 100 2 590.30511 1179.60295 2.10 29.53 1861 1861 MS2 16/18 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 555 3.53 0.00 0 5 100 2 590.30530 1179.60332 2.41 30.67 1798 1798 MS2 15/18 Linfeng_20120514_rIgG_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 618 3.57 0.00 0 9 100 2 590.30560 1179.60393 2.93 30.70 1911 1911 MS2 16/18 Linfeng_20120514_rIgG_8.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 554 3.60 0.00 0 4 100 2 590.30530 1179.60332 2.41 30.97 1769 1769 MS2 15/18 Linfeng_20120515_BRCA1_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 537 3.61 0.00 0 4 100 2 590.30548 1179.60369 2.72 30.97 2012 2012 MS2 15/18 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 595 3.62 0.00 0 7 100 2 590.30420 1179.60112 0.55 28.76 1646 1646 MS2 16/18 Linfeng_20120514_rIgG_6.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 594 3.62 0.00 0 7 100 2 590.30426 1179.60124 0.65 29.74 1917 1917 MS2 17/18 Linfeng_20120514_rIgG_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 550 3.63 0.00 0 4 100 2 590.30493 1179.60259 1.79 30.42 1908 1908 MS2 16/18 Linfeng_20120514_rIgG_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 621 3.64 0.00 0 1 100 2 590.30408 1179.60088 0.34 28.38 1614 1614 MS2 17/18 Linfeng_20120514_rIgG_6.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 565 3.65 0.00 0 2 100 2 590.30560 1179.60393 2.93 30.48 1960 1960 MS2 16/18 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 546 3.65 0.00 0 3 100 2 590.30481 1179.60234 1.59 30.76 2041 2041 MS2 15/18 Linfeng_20120514_rIgG_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 598 3.67 0.00 0 19 100 2 590.30432 1179.60137 0.76 29.06 1675 1675 MS2 16/18 Linfeng_20120514_rIgG_6.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 602 3.68 0.00 0 2 100 2 590.30426 1179.60124 0.65 28.68 1643 1643 MS2 16/18 Linfeng_20120514_rIgG_4.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 573 3.68 0.00 0 6 100 2 590.30469 1179.60210 1.38 30.62 1931 1931 MS2 16/18 Linfeng_20120514_rIgG_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 531 3.72 0.00 0 5 100 2 590.30518 1179.60307 2.21 29.99 1909 1909 MS2 16/18 Linfeng_20120514_rIgG_3.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 510 3.72 0.00 0 7 3 2 665.36542 1329.72356 -1.90 49.00 4513 4513 MS2 19/22 Linfeng_20120514_rIgG_10.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 582 3.72 0.00 0 3 100 2 590.30420 1179.60112 0.55 28.46 1606 1606 MS2 16/18 Linfeng_20120515_BRCA1_7.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 542 3.74 0.00 0 3 100 2 590.30536 1179.60344 2.52 30.56 1967 1967 MS2 16/18 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 589 3.74 0.00 0 0 100 2 590.30438 1179.60149 0.86 28.44 1696 1696 MS2 17/18 Linfeng_20120514_rIgG_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 560 3.74 0.00 0 6 100 2 590.30475 1179.60222 1.48 29.46 1853 1853 MS2 15/18 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 567 3.75 0.00 0 2 100 2 590.30426 1179.60124 0.65 29.16 1848 1848 MS2 16/18 Linfeng_20120514_rIgG_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 565 3.75 0.00 0 2 100 2 590.30573 1179.60417 3.14 30.82 1995 1995 MS2 16/18 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 571 3.75 0.00 0 4 100 2 590.30566 1179.60405 3.04 30.66 2023 2023 MS2 16/18 Linfeng_20120515_BRCA1_8.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 576 3.77 0.00 0 6 100 2 590.30481 1179.60234 1.59 30.44 1802 1802 MS2 17/18 Linfeng_20120514_rIgG_6.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 609 3.78 0.00 0 1 100 2 590.30402 1179.60076 0.24 28.69 1648 1648 MS2 17/18 Linfeng_20120515_BRCA1_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 590 3.78 0.00 0 4 100 2 590.30420 1179.60112 0.55 29.06 1758 1758 MS2 17/18 Linfeng_20120514_rIgG_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 541 3.79 0.00 0 3 100 2 590.30493 1179.60259 1.79 29.25 1834 1834 MS2 16/18 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 557 3.79 0.00 0 3 100 2 590.30457 1179.60185 1.17 29.01 1832 1832 MS2 17/18 Linfeng_20120514_rIgG_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 597 3.79 0.00 0 7 100 2 590.30426 1179.60124 0.65 28.85 1725 1725 MS2 17/18 Linfeng_20120514_rIgG_10.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 567 3.81 0.00 0 4 100 2 590.30426 1179.60124 0.65 30.54 1749 1749 MS2 16/18 Linfeng_20120514_rIgG_7.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 628 3.87 0.00 0 8 100 2 590.30408 1179.60088 0.34 28.80 1652 1652 MS2 17/18 Linfeng_20120514_rIgG_6.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 585 3.89 0.00 0 2 100 2 590.30469 1179.60210 1.38 30.56 1925 1925 MS2 16/18 Linfeng_20120514_rIgG_1.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 568 3.92 0.00 0 4 76 2 590.30426 1179.60124 0.65 28.30 1751 1751 MS2 16/18 Linfeng_20120514_rIgG_2.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 550 3.95 0.00 0 2 100 2 590.30493 1179.60259 1.79 28.53 1760 1760 MS2 16/18 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 546 4.14 0.00 0 4 100 2 590.30530 1179.60332 2.41 30.30 1940 1940 MS2 17/18 Linfeng_20120514_rIgG_3.raw High YEELQITAGR Unambiguous 2 2 IPI00220327.4;IPI00293665.9 CID 1.0000 0.0000 1 1 605 4.23 0.00 0 1 100 2 590.30426 1179.60124 0.65 28.57 1614 1614 MS2 17/18 Linfeng_20120515_BRCA1_7.raw IPI00299145.9 "Keratin, type II cytoskeletal 6C" 10.82 1 0 5 79 127.71 10.82 5 46 87.42 8.87 4 33 564 60.0 8.00 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High TAAENEFVTLK Unambiguous 9 9 IPI00942512.1;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00290857.2;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 489 2.00 0.00 0 43 100 2 611.82062 1222.63396 2.05 32.62 2207 2207 MS2 11/20 Linfeng_20120514_rIgG_3.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 630 2.03 0.00 0 3 2 2 665.36591 1329.72453 -1.17 49.04 4475 4475 MS2 11/22 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 436 2.04 0.00 0 32 100 2 632.34998 1263.69267 -1.35 47.14 4939 4939 MS2 16/20 Linfeng_20120515_BRCA1_5.raw High AIGGGLSSVGGGSSTIK Unambiguous 6 6 IPI00300725.7;IPI00299145.9;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 603 2.04 0.00 0 7 100 2 724.39258 1447.77788 1.86 28.30 1585 1585 MS2 14/32 Linfeng_20120515_BRCA1_7.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 780 2.06 0.00 0 53 100 2 602.32391 1203.64055 3.07 36.28 2428 2428 MS2 12/18 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 442 2.08 0.00 0 45 100 2 632.35022 1263.69316 -0.96 46.32 4619 4619 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 458 2.09 0.00 0 39 100 2 632.35022 1263.69316 -0.96 45.94 4524 4524 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 685 2.10 0.00 0 37 100 2 602.32233 1203.63738 0.43 35.52 2738 2738 MS2 11/18 Linfeng_20120514_rIgG_2.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 737 2.12 0.00 0 17 100 2 602.32263 1203.63799 0.94 37.76 2908 2908 MS2 13/18 Linfeng_20120514_rIgG_3.raw High TAAENEFVTLK Unambiguous 9 9 IPI00942512.1;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00290857.2;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 505 2.12 0.00 0 47 100 2 611.82056 1222.63384 1.95 32.68 2216 2216 MS2 11/20 Linfeng_20120514_rIgG_3.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 641 2.16 0.00 0 61 100 2 602.32324 1203.63921 1.95 36.15 2412 2412 MS2 12/18 Linfeng_20120514_rIgG_4.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 783 2.17 0.00 0 51 100 2 602.32373 1203.64018 2.76 36.51 2450 2450 MS2 10/18 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 469 2.18 0.00 0 52 100 2 632.34998 1263.69267 -1.35 47.15 4212 4212 MS2 14/20 Linfeng_20120514_rIgG_9.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 449 2.19 0.00 0 51 100 2 632.34973 1263.69219 -1.74 45.90 4630 4630 MS2 17/20 Linfeng_20120515_BRCA1_5.raw High AIGGGLSSVGGGSSTIK Unambiguous 6 6 IPI00300725.7;IPI00299145.9;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 555 2.24 0.00 0 4 100 2 724.39148 1447.77568 0.35 28.63 1644 1644 MS2 18/32 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 477 2.27 0.00 0 41 100 2 632.34985 1263.69243 -1.54 46.04 4549 4549 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 707 2.31 0.00 0 57 100 2 602.32233 1203.63738 0.43 36.78 2457 2457 MS2 12/18 Linfeng_20120514_rIgG_7.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 458 2.32 0.00 0 54 100 2 632.34973 1263.69219 -1.74 46.58 4686 4686 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 2.36 0.00 0 37 100 2 632.35046 1263.69365 -0.58 46.86 3971 3971 MS2 16/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 492 2.37 0.00 0 60 100 2 632.35114 1263.69499 0.48 46.73 4431 4431 MS2 14/20 Linfeng_20120515_BRCA1_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 470 2.39 0.00 0 30 100 2 632.34888 1263.69048 -3.09 46.46 4770 4770 MS2 17/20 Linfeng_20120515_BRCA1_5.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 750 2.43 0.00 0 19 100 2 602.32220 1203.63713 0.23 36.53 2910 2910 MS2 14/18 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 473 2.46 0.00 0 46 100 2 632.35022 1263.69316 -0.96 46.78 3951 3951 MS2 17/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 464 2.48 0.00 0 36 100 2 632.35065 1263.69402 -0.29 47.09 3873 3873 MS2 17/20 Linfeng_20120515_BRCA1_7.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 723 2.49 0.00 0 14 100 2 602.32245 1203.63762 0.63 36.59 2611 2611 MS2 15/18 Linfeng_20120515_BRCA1_1.raw High AIGGGLSSVGGGSSTIK Unambiguous 6 6 IPI00300725.7;IPI00299145.9;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 527 2.50 0.00 0 0 100 2 724.39105 1447.77483 -0.24 29.31 1676 1676 MS2 16/32 Linfeng_20120515_BRCA1_7.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 472 2.53 0.00 0 15 68 2 632.35034 1263.69341 -0.77 48.85 4961 4961 MS2 18/20 Linfeng_20120514_rIgG_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 484 2.54 0.00 0 36 100 2 632.35083 1263.69438 0.00 47.21 4177 4177 MS2 15/20 Linfeng_20120514_rIgG_3.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 575 2.57 0.00 0 43 100 2 665.36664 1329.72600 -0.07 49.55 4833 4833 MS2 16/22 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 430 2.59 0.00 0 31 100 2 632.35077 1263.69426 -0.09 47.20 3985 3985 MS2 17/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 449 2.61 0.00 0 37 100 2 632.34973 1263.69219 -1.74 47.17 4828 4828 MS2 16/20 Linfeng_20120515_BRCA1_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 453 2.61 0.00 0 63 100 2 632.35052 1263.69377 -0.48 47.45 4110 4110 MS2 16/20 Linfeng_20120514_rIgG_10.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 514 2.61 0.00 0 4 1 2 665.36542 1329.72356 -1.90 49.02 5023 5023 MS2 14/22 Linfeng_20120515_BRCA1_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 506 2.66 0.00 0 46 100 2 632.35114 1263.69499 0.48 47.52 4063 4063 MS2 17/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 476 2.66 0.00 0 29 79 2 632.35144 1263.69560 0.97 48.87 4958 4958 MS2 18/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 473 2.70 0.00 0 30 100 2 632.35040 1263.69353 -0.67 47.22 4210 4210 MS2 16/20 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 492 2.70 0.00 0 40 100 2 632.35089 1263.69451 0.10 46.88 4113 4113 MS2 14/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 483 2.75 0.00 0 26 100 2 632.35126 1263.69524 0.68 45.46 4168 4168 MS2 18/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 447 2.78 0.00 0 48 100 2 632.35089 1263.69451 0.10 47.36 4023 4023 MS2 16/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 463 2.80 0.00 0 31 100 2 632.35107 1263.69487 0.39 46.86 3905 3905 MS2 17/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 488 2.87 0.00 0 81 100 2 632.35071 1263.69414 -0.19 46.97 4488 4488 MS2 16/20 Linfeng_20120515_BRCA1_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 448 2.87 0.00 0 36 100 2 632.35059 1263.69390 -0.38 46.91 4136 4136 MS2 16/20 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 451 2.87 0.00 0 44 100 2 632.35126 1263.69524 0.68 46.57 3752 3752 MS2 16/20 Linfeng_20120515_BRCA1_7.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 470 2.88 0.00 0 38 100 2 632.35089 1263.69451 0.10 47.03 4139 4139 MS2 16/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 459 2.88 0.00 0 53 100 2 632.35059 1263.69390 -0.38 46.42 3866 3866 MS2 17/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 480 2.88 0.00 0 48 100 2 632.35101 1263.69475 0.29 47.36 4243 4243 MS2 17/20 Linfeng_20120515_BRCA1_1.raw High AIGGGLSSVGGGSSTIK Unambiguous 6 6 IPI00300725.7;IPI00299145.9;IPI00909059.5;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 557 2.91 0.00 0 24 100 2 724.39392 1447.78057 3.72 28.47 1754 1754 MS2 19/32 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 462 2.91 0.00 0 45 100 2 632.35052 1263.69377 -0.48 47.07 4019 4019 MS2 16/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 476 2.92 0.00 0 40 100 2 632.35077 1263.69426 -0.09 46.82 3907 3907 MS2 17/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 486 2.94 0.00 0 40 100 2 632.35040 1263.69353 -0.67 47.44 4228 4228 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 499 2.95 0.00 0 58 100 2 632.35107 1263.69487 0.39 47.47 4601 4601 MS2 15/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 2.95 0.00 0 15 75 2 632.34955 1263.69182 -2.03 48.84 4404 4404 MS2 18/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 461 2.95 0.00 0 23 100 2 632.35034 1263.69341 -0.77 48.82 4535 4535 MS2 18/20 Linfeng_20120514_rIgG_5.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 459 2.98 0.00 0 37 100 2 632.35046 1263.69365 -0.58 47.08 4177 4177 MS2 18/20 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 492 2.99 0.00 0 57 100 2 632.35083 1263.69438 0.00 47.56 4082 4082 MS2 17/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 477 3.00 0.00 0 41 100 2 632.35059 1263.69390 -0.38 47.37 4037 4037 MS2 18/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 449 3.01 0.00 0 34 100 2 632.35071 1263.69414 -0.19 47.28 4194 4194 MS2 15/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 3.01 0.00 0 25 100 2 632.35138 1263.69548 0.87 46.23 3756 3756 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 446 3.03 0.00 0 31 100 2 632.35193 1263.69658 1.74 46.21 4314 4314 MS2 17/20 Linfeng_20120514_rIgG_2.raw High WTLLQEQGTK Unambiguous 10 10 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 635 3.04 0.00 0 22 100 2 602.32306 1203.63884 1.65 36.75 2791 2791 MS2 15/18 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 474 3.04 0.00 0 28 100 2 632.35083 1263.69438 0.00 45.97 3839 3839 MS2 17/20 Linfeng_20120514_rIgG_5.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 413 3.05 0.00 0 28 100 2 632.35193 1263.69658 1.74 45.62 4198 4198 MS2 17/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 441 3.06 0.00 0 27 100 2 632.35101 1263.69475 0.29 45.93 3957 3957 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 518 3.10 0.00 0 20 63 2 632.35016 1263.69304 -1.06 48.84 4399 4399 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 3.11 0.00 0 27 100 2 632.35065 1263.69402 -0.29 45.86 3667 3667 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 438 3.13 0.00 0 26 100 2 632.35107 1263.69487 0.39 46.04 3711 3711 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 471 3.15 0.00 0 32 100 2 632.35181 1263.69634 1.55 46.54 4386 4386 MS2 16/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 432 3.16 0.00 0 19 100 2 632.34955 1263.69182 -2.03 48.82 4535 4535 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 419 3.20 0.00 0 33 100 2 632.35156 1263.69585 1.16 46.05 4283 4283 MS2 16/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 491 3.22 0.00 0 38 100 2 632.35114 1263.69499 0.48 46.67 4076 4076 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 422 3.22 0.00 0 24 100 2 632.35083 1263.69438 0.00 45.90 3141 3141 MS2 17/20 Linfeng_20120515_BRCA1_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 374 3.22 0.00 0 19 100 2 632.35010 1263.69292 -1.16 45.76 3935 3935 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 435 3.24 0.00 0 24 100 2 632.35028 1263.69328 -0.87 45.64 3920 3920 MS2 18/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 457 3.24 0.00 0 33 100 2 632.35156 1263.69585 1.16 46.60 3844 3844 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 446 3.29 0.00 0 30 81 2 632.34961 1263.69194 -1.93 48.82 4861 4861 MS2 18/20 Linfeng_20120514_rIgG_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 494 3.30 0.00 0 53 100 2 632.35089 1263.69451 0.10 47.25 4062 4062 MS2 16/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 472 3.30 0.00 0 26 100 2 632.35095 1263.69463 0.19 45.84 3132 3132 MS2 17/20 Linfeng_20120515_BRCA1_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 422 3.41 0.00 0 25 100 2 632.35077 1263.69426 -0.09 46.13 3994 3994 MS2 17/20 Linfeng_20120514_rIgG_3.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 510 3.72 0.00 0 7 3 2 665.36542 1329.72356 -1.90 49.00 4513 4513 MS2 19/22 Linfeng_20120514_rIgG_10.raw IPI00241841.10 "Keratin, type II cytoskeletal 79" 5.98 1 0 3 101 150.08 5.98 3 55 119.55 5.98 3 46 535 57.8 7.20 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 330 2.01 0.00 0 28 100 2 570.27509 1139.54289 2.38 34.25 2161 2161 MS2 10/16 Linfeng_20120514_rIgG_7.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 335 2.02 0.00 0 17 100 2 570.27478 1139.54228 1.85 33.48 2379 2379 MS2 12/16 Linfeng_20120515_BRCA1_10.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 630 2.03 0.00 0 3 2 2 665.36591 1329.72453 -1.17 49.04 4475 4475 MS2 11/22 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 436 2.04 0.00 0 32 100 2 632.34998 1263.69267 -1.35 47.14 4939 4939 MS2 16/20 Linfeng_20120515_BRCA1_5.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 442 2.08 0.00 0 45 100 2 632.35022 1263.69316 -0.96 46.32 4619 4619 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 351 2.08 0.00 0 7 100 2 570.27490 1139.54253 2.06 33.44 2075 2075 MS2 11/16 Linfeng_20120515_BRCA1_7.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 458 2.09 0.00 0 39 100 2 632.35022 1263.69316 -0.96 45.94 4524 4524 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 380 2.10 0.00 0 35 100 2 570.27563 1139.54399 3.34 34.19 2179 2179 MS2 12/16 Linfeng_20120514_rIgG_4.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 370 2.10 0.00 0 14 100 2 570.27582 1139.54436 3.67 33.67 2154 2154 MS2 11/16 Linfeng_20120515_BRCA1_9.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 334 2.12 0.00 0 55 100 2 570.27478 1139.54228 1.85 34.08 2425 2425 MS2 13/16 Linfeng_20120514_rIgG_3.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 378 2.16 0.00 0 7 100 2 570.27563 1139.54399 3.34 33.76 2190 2190 MS2 12/16 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 469 2.18 0.00 0 52 100 2 632.34998 1263.69267 -1.35 47.15 4212 4212 MS2 14/20 Linfeng_20120514_rIgG_9.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 449 2.19 0.00 0 51 100 2 632.34973 1263.69219 -1.74 45.90 4630 4630 MS2 17/20 Linfeng_20120515_BRCA1_5.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 332 2.21 0.00 0 5 100 2 570.27441 1139.54155 1.20 33.77 2093 2093 MS2 11/16 Linfeng_20120514_rIgG_7.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 330 2.21 0.00 0 31 100 2 570.27625 1139.54521 4.42 34.47 2207 2207 MS2 11/16 Linfeng_20120515_BRCA1_4.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 363 2.23 0.00 0 9 100 2 570.27570 1139.54411 3.45 33.99 2149 2149 MS2 11/16 Linfeng_20120514_rIgG_4.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 344 2.25 0.00 0 12 100 2 570.27521 1139.54314 2.60 33.84 1993 1993 MS2 13/16 Linfeng_20120515_BRCA1_2.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 337 2.26 0.00 0 11 100 2 570.27472 1139.54216 1.74 33.98 2122 2122 MS2 12/16 Linfeng_20120514_rIgG_7.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 477 2.27 0.00 0 41 100 2 632.34985 1263.69243 -1.54 46.04 4549 4549 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 361 2.27 0.00 0 9 100 2 570.27441 1139.54155 1.20 33.91 2110 2110 MS2 12/16 Linfeng_20120514_rIgG_7.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 373 2.28 0.00 0 21 100 2 570.27545 1139.54363 3.02 33.17 2250 2250 MS2 12/16 Linfeng_20120514_rIgG_1.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 381 2.30 0.00 0 18 100 2 570.27551 1139.54375 3.13 33.51 1955 1955 MS2 13/16 Linfeng_20120515_BRCA1_2.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 374 2.31 0.00 0 30 100 2 570.27570 1139.54411 3.45 34.36 2207 2207 MS2 12/16 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 458 2.32 0.00 0 54 100 2 632.34973 1263.69219 -1.74 46.58 4686 4686 MS2 18/20 Linfeng_20120515_BRCA1_8.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 335 2.34 0.00 0 10 100 2 570.27509 1139.54289 2.38 33.76 2378 2378 MS2 12/16 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 2.36 0.00 0 37 100 2 632.35046 1263.69365 -0.58 46.86 3971 3971 MS2 16/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 492 2.37 0.00 0 60 100 2 632.35114 1263.69499 0.48 46.73 4431 4431 MS2 14/20 Linfeng_20120515_BRCA1_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 470 2.39 0.00 0 30 100 2 632.34888 1263.69048 -3.09 46.46 4770 4770 MS2 17/20 Linfeng_20120515_BRCA1_5.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 335 2.41 0.00 0 25 100 2 570.27521 1139.54314 2.60 33.07 2234 2234 MS2 12/16 Linfeng_20120514_rIgG_1.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 379 2.43 0.00 0 29 100 2 570.27570 1139.54411 3.45 33.37 2246 2246 MS2 10/16 Linfeng_20120514_rIgG_10.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 337 2.44 0.00 0 14 100 2 570.27527 1139.54326 2.70 33.26 2110 2110 MS2 12/16 Linfeng_20120515_BRCA1_1.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 340 2.45 0.00 0 13 100 2 570.27527 1139.54326 2.70 33.37 2126 2126 MS2 13/16 Linfeng_20120515_BRCA1_1.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 370 2.45 0.00 0 8 100 2 570.27411 1139.54094 0.67 33.85 2104 2104 MS2 13/16 Linfeng_20120514_rIgG_7.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 473 2.46 0.00 0 46 100 2 632.35022 1263.69316 -0.96 46.78 3951 3951 MS2 17/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 464 2.48 0.00 0 36 100 2 632.35065 1263.69402 -0.29 47.09 3873 3873 MS2 17/20 Linfeng_20120515_BRCA1_7.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 335 2.50 0.00 0 14 100 2 570.27478 1139.54228 1.85 33.58 2072 2072 MS2 13/16 Linfeng_20120514_rIgG_7.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 339 2.51 0.00 0 8 100 2 570.27472 1139.54216 1.74 33.67 2176 2176 MS2 12/16 Linfeng_20120515_BRCA1_1.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 341 2.52 0.00 0 27 100 2 570.27484 1139.54241 1.95 34.26 2270 2270 MS2 11/16 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 472 2.53 0.00 0 15 68 2 632.35034 1263.69341 -0.77 48.85 4961 4961 MS2 18/20 Linfeng_20120514_rIgG_8.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 361 2.53 0.00 0 11 100 2 570.27411 1139.54094 0.67 33.50 2500 2500 MS2 12/16 Linfeng_20120515_BRCA1_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 484 2.54 0.00 0 36 100 2 632.35083 1263.69438 0.00 47.21 4177 4177 MS2 15/20 Linfeng_20120514_rIgG_3.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 366 2.54 0.00 0 18 100 2 570.27539 1139.54350 2.92 33.87 2133 2133 MS2 13/16 Linfeng_20120514_rIgG_4.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 575 2.57 0.00 0 43 100 2 665.36664 1329.72600 -0.07 49.55 4833 4833 MS2 16/22 Linfeng_20120515_BRCA1_1.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 353 2.59 0.00 0 12 100 2 570.27417 1139.54106 0.77 33.80 2572 2572 MS2 13/16 Linfeng_20120515_BRCA1_8.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 350 2.59 0.00 0 26 100 2 570.27527 1139.54326 2.70 33.04 2229 2229 MS2 13/16 Linfeng_20120514_rIgG_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 430 2.59 0.00 0 31 100 2 632.35077 1263.69426 -0.09 47.20 3985 3985 MS2 17/20 Linfeng_20120515_BRCA1_4.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 309 2.60 0.00 0 18 100 2 570.27362 1139.53996 -0.19 33.39 2199 2199 MS2 12/16 Linfeng_20120514_rIgG_6.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 449 2.61 0.00 0 37 100 2 632.34973 1263.69219 -1.74 47.17 4828 4828 MS2 16/20 Linfeng_20120515_BRCA1_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 453 2.61 0.00 0 63 100 2 632.35052 1263.69377 -0.48 47.45 4110 4110 MS2 16/20 Linfeng_20120514_rIgG_10.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 514 2.61 0.00 0 4 1 2 665.36542 1329.72356 -1.90 49.02 5023 5023 MS2 14/22 Linfeng_20120515_BRCA1_10.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 317 2.66 0.00 0 21 100 2 570.27484 1139.54241 1.95 33.11 2240 2240 MS2 12/16 Linfeng_20120514_rIgG_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 506 2.66 0.00 0 46 100 2 632.35114 1263.69499 0.48 47.52 4063 4063 MS2 17/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 476 2.66 0.00 0 29 79 2 632.35144 1263.69560 0.97 48.87 4958 4958 MS2 18/20 Linfeng_20120514_rIgG_2.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 339 2.68 0.00 0 18 100 2 570.27527 1139.54326 2.70 33.75 2065 2065 MS2 12/16 Linfeng_20120515_BRCA1_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 473 2.70 0.00 0 30 100 2 632.35040 1263.69353 -0.67 47.22 4210 4210 MS2 16/20 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 492 2.70 0.00 0 40 100 2 632.35089 1263.69451 0.10 46.88 4113 4113 MS2 14/20 Linfeng_20120514_rIgG_3.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 336 2.71 0.00 0 13 100 2 570.27496 1139.54265 2.17 33.25 2302 2302 MS2 13/16 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 483 2.75 0.00 0 26 100 2 632.35126 1263.69524 0.68 45.46 4168 4168 MS2 18/20 Linfeng_20120514_rIgG_2.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 366 2.77 0.00 0 16 100 2 570.27380 1139.54033 0.13 33.33 2248 2248 MS2 13/16 Linfeng_20120514_rIgG_8.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 447 2.78 0.00 0 48 100 2 632.35089 1263.69451 0.10 47.36 4023 4023 MS2 16/20 Linfeng_20120515_BRCA1_4.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 329 2.79 0.00 0 10 100 2 570.27484 1139.54241 1.95 33.62 2166 2166 MS2 13/16 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 463 2.80 0.00 0 31 100 2 632.35107 1263.69487 0.39 46.86 3905 3905 MS2 17/20 Linfeng_20120515_BRCA1_4.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 367 2.85 0.00 0 6 100 2 570.27539 1139.54350 2.92 33.43 2136 2136 MS2 13/16 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 488 2.87 0.00 0 81 100 2 632.35071 1263.69414 -0.19 46.97 4488 4488 MS2 16/20 Linfeng_20120515_BRCA1_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 448 2.87 0.00 0 36 100 2 632.35059 1263.69390 -0.38 46.91 4136 4136 MS2 16/20 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 451 2.87 0.00 0 44 100 2 632.35126 1263.69524 0.68 46.57 3752 3752 MS2 16/20 Linfeng_20120515_BRCA1_7.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 470 2.88 0.00 0 38 100 2 632.35089 1263.69451 0.10 47.03 4139 4139 MS2 16/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 459 2.88 0.00 0 53 100 2 632.35059 1263.69390 -0.38 46.42 3866 3866 MS2 17/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 480 2.88 0.00 0 48 100 2 632.35101 1263.69475 0.29 47.36 4243 4243 MS2 17/20 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 462 2.91 0.00 0 45 100 2 632.35052 1263.69377 -0.48 47.07 4019 4019 MS2 16/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 476 2.92 0.00 0 40 100 2 632.35077 1263.69426 -0.09 46.82 3907 3907 MS2 17/20 Linfeng_20120514_rIgG_4.raw High DYQELMNVK Unambiguous 4 4 IPI00241841.10;IPI00021304.1;IPI00942512.1;IPI00290857.2 CID 1.0000 0.0000 1 1 363 2.92 0.00 0 6 100 2 570.27539 1139.54350 2.92 33.56 2156 2156 MS2 13/16 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 486 2.94 0.00 0 40 100 2 632.35040 1263.69353 -0.67 47.44 4228 4228 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 499 2.95 0.00 0 58 100 2 632.35107 1263.69487 0.39 47.47 4601 4601 MS2 15/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 2.95 0.00 0 15 75 2 632.34955 1263.69182 -2.03 48.84 4404 4404 MS2 18/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 461 2.95 0.00 0 23 100 2 632.35034 1263.69341 -0.77 48.82 4535 4535 MS2 18/20 Linfeng_20120514_rIgG_5.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 459 2.98 0.00 0 37 100 2 632.35046 1263.69365 -0.58 47.08 4177 4177 MS2 18/20 Linfeng_20120515_BRCA1_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 492 2.99 0.00 0 57 100 2 632.35083 1263.69438 0.00 47.56 4082 4082 MS2 17/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 477 3.00 0.00 0 41 100 2 632.35059 1263.69390 -0.38 47.37 4037 4037 MS2 18/20 Linfeng_20120514_rIgG_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 449 3.01 0.00 0 34 100 2 632.35071 1263.69414 -0.19 47.28 4194 4194 MS2 15/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 3.01 0.00 0 25 100 2 632.35138 1263.69548 0.87 46.23 3756 3756 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 446 3.03 0.00 0 31 100 2 632.35193 1263.69658 1.74 46.21 4314 4314 MS2 17/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 474 3.04 0.00 0 28 100 2 632.35083 1263.69438 0.00 45.97 3839 3839 MS2 17/20 Linfeng_20120514_rIgG_5.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 413 3.05 0.00 0 28 100 2 632.35193 1263.69658 1.74 45.62 4198 4198 MS2 17/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 441 3.06 0.00 0 27 100 2 632.35101 1263.69475 0.29 45.93 3957 3957 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 518 3.10 0.00 0 20 63 2 632.35016 1263.69304 -1.06 48.84 4399 4399 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 456 3.11 0.00 0 27 100 2 632.35065 1263.69402 -0.29 45.86 3667 3667 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 438 3.13 0.00 0 26 100 2 632.35107 1263.69487 0.39 46.04 3711 3711 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 471 3.15 0.00 0 32 100 2 632.35181 1263.69634 1.55 46.54 4386 4386 MS2 16/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 432 3.16 0.00 0 19 100 2 632.34955 1263.69182 -2.03 48.82 4535 4535 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 419 3.20 0.00 0 33 100 2 632.35156 1263.69585 1.16 46.05 4283 4283 MS2 16/20 Linfeng_20120514_rIgG_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 491 3.22 0.00 0 38 100 2 632.35114 1263.69499 0.48 46.67 4076 4076 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 422 3.22 0.00 0 24 100 2 632.35083 1263.69438 0.00 45.90 3141 3141 MS2 17/20 Linfeng_20120515_BRCA1_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 374 3.22 0.00 0 19 100 2 632.35010 1263.69292 -1.16 45.76 3935 3935 MS2 17/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 435 3.24 0.00 0 24 100 2 632.35028 1263.69328 -0.87 45.64 3920 3920 MS2 18/20 Linfeng_20120514_rIgG_3.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 457 3.24 0.00 0 33 100 2 632.35156 1263.69585 1.16 46.60 3844 3844 MS2 18/20 Linfeng_20120515_BRCA1_4.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 446 3.29 0.00 0 30 81 2 632.34961 1263.69194 -1.93 48.82 4861 4861 MS2 18/20 Linfeng_20120514_rIgG_1.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 494 3.30 0.00 0 53 100 2 632.35089 1263.69451 0.10 47.25 4062 4062 MS2 16/20 Linfeng_20120514_rIgG_10.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 472 3.30 0.00 0 26 100 2 632.35095 1263.69463 0.19 45.84 3132 3132 MS2 17/20 Linfeng_20120515_BRCA1_2.raw High LALDVEIATYR Unambiguous 14 14 IPI00942512.1;IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00290857.2;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 422 3.41 0.00 0 25 100 2 632.35077 1263.69426 -0.09 46.13 3994 3994 MS2 17/20 Linfeng_20120514_rIgG_3.raw High NLDLDSIIAEVK Unambiguous 12 12 IPI00009867.3;IPI00300725.7;IPI00293665.9;IPI00299145.9;IPI00241841.10;IPI00021304.1;IPI00796776.1;IPI00909059.5;IPI00910738.1;IPI00930073.1;IPI00942257.1;IPI00956313.1 CID 1.0000 0.0000 1 1 510 3.72 0.00 0 7 3 2 665.36542 1329.72356 -1.90 49.00 4513 4513 MS2 19/22 Linfeng_20120514_rIgG_10.raw IPI00783781.2 Nuclear pore complex protein Nup205 2.78 1 0 3 6 0.00 17.71 2.78 3 6 2012 227.8 6.19 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High mLALALLDR Unambiguous 2 2 IPI00783781.2;IPI00925674.1 M1(Oxidation) CID 1.0000 0.0000 1 1 454 2.46 0.00 0 29 100 2 516.29987 1031.59245 0.59 48.32 4128 4128 MS2 14/16 Linfeng_20120515_BRCA1_3.raw High FTDELmEQGLTYK Unambiguous 2 2 IPI00783781.2;IPI00925674.1 M6(Oxidation) CID 1.0000 0.0000 1 1 344 2.51 0.00 0 8 100 2 795.87378 1590.74028 2.90 35.67 2210 2210 MS2 14/24 Linfeng_20120515_BRCA1_2.raw High mLALALLDR Unambiguous 2 2 IPI00783781.2;IPI00925674.1 M1(Oxidation) CID 1.0000 0.0000 1 1 474 2.68 0.00 0 37 100 2 516.29962 1031.59197 0.12 48.13 4084 4084 MS2 13/16 Linfeng_20120515_BRCA1_3.raw High FTDELmEQGLTYK Unambiguous 2 2 IPI00783781.2;IPI00925674.1 M6(Oxidation) CID 1.0000 0.0000 1 1 327 2.85 0.00 0 6 100 2 795.87384 1590.74040 2.98 35.52 2194 2194 MS2 17/24 Linfeng_20120515_BRCA1_2.raw High FTDELmEQGLTYK Unambiguous 2 2 IPI00783781.2;IPI00925674.1 M6(Oxidation) CID 1.0000 0.0000 1 1 347 2.99 0.00 0 3 100 2 795.87360 1590.73992 2.67 35.56 2198 2198 MS2 18/24 Linfeng_20120515_BRCA1_2.raw High ILDDEAAQELmPVVAGAVFTLTAHLSQAVLTEQK Unambiguous 2 2 IPI00783781.2;IPI00925674.1 M11(Oxidation) CID 1.0000 0.0000 1 1 292 4.22 0.00 0 25 92 4 906.97675 3624.88515 0.56 55.42 5117 5117 MS2 42/198 Linfeng_20120515_BRCA1_3.raw IPI00027252.6 Prohibitin-2 13.38 1 0 3 5 16.35 13.38 3 5 299 33.3 9.83 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High FNASQLITQR Unambiguous 2 2 IPI00027252.6;IPI00797822.2 CID 1.0000 0.0000 1 1 593 2.19 0.00 0 20 100 2 589.32147 1177.63567 2.74 36.60 2521 2521 MS2 14/18 Linfeng_20120515_BRCA1_7.raw High FNASQLITQR Unambiguous 2 2 IPI00027252.6;IPI00797822.2 CID 1.0000 0.0000 1 1 611 2.43 0.00 0 29 100 2 589.32123 1177.63518 2.33 36.93 2564 2564 MS2 14/18 Linfeng_20120515_BRCA1_7.raw High LLLGAGAVAYGVR Unambiguous 2 2 IPI00027252.6;IPI00797822.2 CID 1.0000 0.0000 1 1 228 3.10 0.00 0 13 100 2 630.37714 1259.74700 -0.08 45.03 3388 3388 MS2 19/24 Linfeng_20120515_BRCA1_7.raw High LLLGAGAVAYGVR Unambiguous 2 2 IPI00027252.6;IPI00797822.2 CID 1.0000 0.0000 1 1 227 3.37 0.00 0 20 100 2 630.37677 1259.74626 -0.67 44.84 3344 3344 MS2 17/24 Linfeng_20120515_BRCA1_7.raw High IGGVQQDTILAEGLHFR Unambiguous 2 2 IPI00027252.6;IPI00797822.2 CID 1.0000 0.0000 1 1 512 5.26 0.00 0 5 31 3 618.66577 1853.98276 -2.24 48.74 4277 4277 MS2 36/64 Linfeng_20120515_BRCA1_7.raw IPI00852875.4 protein BANP isoform c 7.52 1 0 3 6 17.44 7.52 3 6 505 55.1 5.41 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High FGITESDWYR Unambiguous 3 3 IPI00956625.1;IPI00167773.2;IPI00852875.4 CID 1.0000 0.0000 1 1 245 2.16 0.00 0 33 100 2 637.29535 1273.58342 -1.10 43.97 4157 4157 MS2 11/18 Linfeng_20120515_BRCA1_5.raw High FGITESDWYR Unambiguous 3 3 IPI00956625.1;IPI00167773.2;IPI00852875.4 CID 1.0000 0.0000 1 1 214 2.59 0.00 0 26 100 2 637.29431 1273.58135 -2.73 44.09 4185 4185 MS2 14/18 Linfeng_20120515_BRCA1_5.raw High FGITESDWYR Unambiguous 3 3 IPI00956625.1;IPI00167773.2;IPI00852875.4 CID 1.0000 0.0000 1 1 234 2.69 0.00 0 21 100 2 637.29559 1273.58391 -0.72 44.25 3282 3282 MS2 12/18 Linfeng_20120515_BRCA1_4.raw High APDSLENVISNAVPGR Unambiguous 3 3 IPI00956625.1;IPI00167773.2;IPI00852875.4 CID 1.0000 0.0000 1 1 542 3.14 0.00 0 8 100 2 819.92682 1638.84636 1.04 46.64 3854 3854 MS2 15/30 Linfeng_20120515_BRCA1_4.raw High mALTLLDYLFHR Unambiguous 3 3 IPI00956625.1;IPI00167773.2;IPI00852875.4 M1(Oxidation) CID 1.0000 0.0000 1 1 455 3.31 0.00 0 32 100 2 754.89941 1508.79155 -1.00 55.39 5263 5263 MS2 19/22 Linfeng_20120515_BRCA1_4.raw High mALTLLDYLFHR Unambiguous 3 3 IPI00956625.1;IPI00167773.2;IPI00852875.4 M1(Oxidation) CID 1.0000 0.0000 1 1 480 3.56 0.00 0 10 100 2 754.90021 1508.79314 0.05 55.40 5095 5095 MS2 18/22 Linfeng_20120515_BRCA1_6.raw IPI00956625.1 protein BANP isoform f 7.48 1 0 3 6 17.44 7.48 3 6 508 55.5 5.41 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High FGITESDWYR Unambiguous 3 3 IPI00956625.1;IPI00167773.2;IPI00852875.4 CID 1.0000 0.0000 1 1 245 2.16 0.00 0 33 100 2 637.29535 1273.58342 -1.10 43.97 4157 4157 MS2 11/18 Linfeng_20120515_BRCA1_5.raw High FGITESDWYR Unambiguous 3 3 IPI00956625.1;IPI00167773.2;IPI00852875.4 CID 1.0000 0.0000 1 1 214 2.59 0.00 0 26 100 2 637.29431 1273.58135 -2.73 44.09 4185 4185 MS2 14/18 Linfeng_20120515_BRCA1_5.raw High FGITESDWYR Unambiguous 3 3 IPI00956625.1;IPI00167773.2;IPI00852875.4 CID 1.0000 0.0000 1 1 234 2.69 0.00 0 21 100 2 637.29559 1273.58391 -0.72 44.25 3282 3282 MS2 12/18 Linfeng_20120515_BRCA1_4.raw High APDSLENVISNAVPGR Unambiguous 3 3 IPI00956625.1;IPI00167773.2;IPI00852875.4 CID 1.0000 0.0000 1 1 542 3.14 0.00 0 8 100 2 819.92682 1638.84636 1.04 46.64 3854 3854 MS2 15/30 Linfeng_20120515_BRCA1_4.raw High mALTLLDYLFHR Unambiguous 3 3 IPI00956625.1;IPI00167773.2;IPI00852875.4 M1(Oxidation) CID 1.0000 0.0000 1 1 455 3.31 0.00 0 32 100 2 754.89941 1508.79155 -1.00 55.39 5263 5263 MS2 19/22 Linfeng_20120515_BRCA1_4.raw High mALTLLDYLFHR Unambiguous 3 3 IPI00956625.1;IPI00167773.2;IPI00852875.4 M1(Oxidation) CID 1.0000 0.0000 1 1 480 3.56 0.00 0 10 100 2 754.90021 1508.79314 0.05 55.40 5095 5095 MS2 18/22 Linfeng_20120515_BRCA1_6.raw IPI00941328.1 Putative uncharacterized protein HSPA1B 16.81 1 0 3 8 22.29 16.81 3 8 232 25.2 6.90 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High FEELcSDLFR Unambiguous 5 5 IPI00304925.5;IPI00339269.1;IPI00845339.1;IPI00911039.1;IPI00941328.1 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 246 2.07 0.00 0 17 100 2 658.30420 1315.60112 1.78 46.80 3891 3891 MS2 13/18 Linfeng_20120515_BRCA1_4.raw High FEELcSDLFR Unambiguous 5 5 IPI00304925.5;IPI00339269.1;IPI00845339.1;IPI00911039.1;IPI00941328.1 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 225 2.20 0.00 0 11 100 2 658.30341 1315.59953 0.58 46.71 3870 3870 MS2 12/18 Linfeng_20120515_BRCA1_4.raw High TTPSYVAFTDTER Unambiguous 10 10 IPI00304925.5;IPI00007702.1;IPI00339269.1;IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00845339.1;IPI00910870.1;IPI00911039.1;IPI00941328.1 CID 1.0000 0.0000 1 1 372 2.36 0.00 0 0 100 2 744.35620 1487.70513 2.56 33.88 2120 2120 MS2 16/24 Linfeng_20120515_BRCA1_4.raw High FEELcSDLFR Unambiguous 5 5 IPI00304925.5;IPI00339269.1;IPI00845339.1;IPI00911039.1;IPI00941328.1 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 244 2.69 0.00 0 22 100 2 658.30408 1315.60088 1.60 46.57 3837 3837 MS2 15/18 Linfeng_20120515_BRCA1_4.raw High TTPSYVAFTDTER Unambiguous 10 10 IPI00304925.5;IPI00007702.1;IPI00339269.1;IPI00003865.1;IPI00939595.1;IPI00037070.3;IPI00845339.1;IPI00910870.1;IPI00911039.1;IPI00941328.1 CID 1.0000 0.0000 1 1 332 2.70 0.00 0 21 100 2 744.35712 1487.70696 3.79 34.89 2274 2274 MS2 16/24 Linfeng_20120515_BRCA1_4.raw High FEELcSDLFR Unambiguous 5 5 IPI00304925.5;IPI00339269.1;IPI00845339.1;IPI00911039.1;IPI00941328.1 C5(Carbamidomethyl) CID 1.0000 0.0000 1 1 207 2.88 0.00 0 16 100 2 658.30365 1315.60002 0.95 46.49 3818 3818 MS2 14/18 Linfeng_20120515_BRCA1_4.raw High IINEPTAAAIAYGLDR Unambiguous 5 5 IPI00304925.5;IPI00339269.1;IPI00845339.1;IPI00911039.1;IPI00941328.1 CID 1.0000 0.0000 1 1 459 3.44 0.00 0 13 100 2 844.45496 1687.90264 0.71 46.89 3912 3912 MS2 18/30 Linfeng_20120515_BRCA1_4.raw High IINEPTAAAIAYGLDR Unambiguous 5 5 IPI00304925.5;IPI00339269.1;IPI00845339.1;IPI00911039.1;IPI00941328.1 CID 1.0000 0.0000 1 1 437 3.95 0.00 0 3 100 2 844.45569 1687.90410 1.58 46.28 3768 3768 MS2 18/30 Linfeng_20120515_BRCA1_4.raw IPI00868835.2 Similar to Heterogeneous nuclear ribonucleoproteins C1/C2 (hnRNP C1 / hnRNP C2). Isoform 4 16.37 1 0 3 18 40.08 16.37 3 10 25.65 16.37 3 8 226 25.0 5.06 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High SDVEAIFSK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 492 2.15 0.00 0 9 100 2 498.25745 995.50762 3.18 34.56 2156 2156 MS2 12/16 Linfeng_20120515_BRCA1_6.raw Medium mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 511 2.33 0.00 0 43 100 3 566.97479 1698.90982 0.14 46.04 3527 3527 MS2 17/60 Linfeng_20120515_BRCA1_6.raw High SDVEAIFSK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 488 2.39 0.00 0 4 100 2 498.25674 995.50621 1.77 34.00 2125 2125 MS2 14/16 Linfeng_20120514_rIgG_7.raw High SDVEAIFSK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 496 2.41 0.00 0 10 100 2 498.25702 995.50676 2.32 35.00 2271 2271 MS2 13/16 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 550 2.52 0.00 0 45 100 3 566.97455 1698.90909 -0.29 45.43 3385 3385 MS2 25/60 Linfeng_20120515_BRCA1_6.raw High VFIGNLNTLVVK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 105 3.13 0.00 0 2 5 2 658.90015 1316.79302 -0.53 48.93 4343 4343 MS2 19/22 Linfeng_20120515_BRCA1_7.raw High VFIGNLNTLVVK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 140 3.30 0.00 0 10 16 2 658.90002 1316.79277 -0.71 48.92 4234 4234 MS2 20/22 Linfeng_20120515_BRCA1_6.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 511 3.52 0.00 0 46 100 3 566.97467 1698.90946 -0.08 46.14 3551 3551 MS2 23/60 Linfeng_20120515_BRCA1_6.raw High VFIGNLNTLVVK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 CID 1.0000 0.0000 1 1 142 3.77 0.00 0 1 12 2 658.89978 1316.79228 -1.08 48.92 4212 4212 MS2 20/22 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 492 4.05 0.00 0 39 100 2 849.95941 1698.91155 1.15 46.68 3675 3675 MS2 19/30 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 483 4.24 0.00 0 44 100 2 849.95862 1698.90996 0.22 46.63 3668 3668 MS2 18/30 Linfeng_20120515_BRCA1_6.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 468 4.29 0.00 0 30 100 2 849.95850 1698.90972 0.08 46.43 3622 3622 MS2 19/30 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 533 4.43 0.00 0 46 100 2 849.95782 1698.90837 -0.71 46.78 3696 3696 MS2 19/30 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 497 4.43 0.00 0 44 100 2 849.95728 1698.90727 -1.36 47.32 3821 3821 MS2 19/30 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 552 4.47 0.00 0 53 100 2 849.95947 1698.91167 1.23 46.64 3770 3770 MS2 19/30 Linfeng_20120515_BRCA1_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 476 4.66 0.00 0 34 100 2 849.95923 1698.91118 0.94 46.62 3662 3662 MS2 20/30 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 493 4.74 0.00 0 27 100 2 849.95905 1698.91081 0.72 45.63 3468 3468 MS2 23/30 Linfeng_20120514_rIgG_7.raw High mIAGQVLDINLAAEPK Unambiguous 7 7 IPI00477313.3;IPI00216592.2;IPI00759596.1;IPI00910718.1;IPI00868835.2;IPI00909232.1;IPI00910666.1 M1(Oxidation) CID 1.0000 0.0000 1 1 483 4.91 0.00 0 33 100 2 849.95905 1698.91081 0.72 45.49 3441 3441 MS2 21/30 Linfeng_20120514_rIgG_7.raw IPI00786995.1 "similar to protein kinase, DNA-activated, catalytic polypeptide" 1.42 1 0 5 10 0.00 24.50 1.42 5 10 4096 465.2 7.23 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High SIGEYDVLR Unambiguous 3 3 IPI00296337.2;IPI00376215.2;IPI00786995.1 CID 1.0000 0.0000 1 1 456 2.00 0.00 0 34 100 2 526.27618 1051.54509 3.04 35.02 2249 2249 MS2 11/16 Linfeng_20120515_BRCA1_3.raw High DQNILLGTTYR Unambiguous 3 3 IPI00296337.2;IPI00376215.2;IPI00786995.1 CID 1.0000 0.0000 1 1 570 2.16 0.00 0 5 100 2 647.34412 1293.68096 0.91 37.16 2362 2362 MS2 13/20 Linfeng_20120515_BRCA1_2.raw Medium VLEQLIVAHFPmQSR Unambiguous 3 3 IPI00296337.2;IPI00376215.2;IPI00786995.1 M12(Oxidation) CID 1.0000 0.0000 1 1 477 2.33 0.00 0 2 100 3 595.32263 1783.95334 0.51 48.61 4198 4198 MS2 18/56 Linfeng_20120515_BRCA1_3.raw High LLALNSLYSPK Unambiguous 3 3 IPI00296337.2;IPI00376215.2;IPI00786995.1 CID 1.0000 0.0000 1 1 295 2.34 0.00 0 59 100 2 609.85815 1218.70903 -0.21 45.89 3676 3676 MS2 12/20 Linfeng_20120515_BRCA1_4.raw High LLALNSLYSPK Unambiguous 3 3 IPI00296337.2;IPI00376215.2;IPI00786995.1 CID 1.0000 0.0000 1 1 299 2.35 0.00 0 60 100 2 609.85809 1218.70891 -0.31 45.78 3529 3529 MS2 11/20 Linfeng_20120515_BRCA1_3.raw High LLALNSLYSPK Unambiguous 3 3 IPI00296337.2;IPI00376215.2;IPI00786995.1 CID 1.0000 0.0000 1 1 296 2.36 0.00 0 47 100 2 609.85852 1218.70976 0.39 45.92 3560 3560 MS2 11/20 Linfeng_20120515_BRCA1_3.raw High LLALNSLYSPK Unambiguous 3 3 IPI00296337.2;IPI00376215.2;IPI00786995.1 CID 1.0000 0.0000 1 1 298 2.47 0.00 0 30 100 2 609.85876 1218.71025 0.79 46.00 3578 3578 MS2 13/20 Linfeng_20120515_BRCA1_3.raw High mSTSPEAFLALR Unambiguous 3 3 IPI00296337.2;IPI00376215.2;IPI00786995.1 M1(Oxidation) CID 1.0000 0.0000 1 1 455 2.60 0.00 0 10 100 2 669.84003 1338.67278 0.37 45.51 3465 3465 MS2 13/22 Linfeng_20120515_BRCA1_3.raw High VLEQLIVAHFPmQSR Unambiguous 3 3 IPI00296337.2;IPI00376215.2;IPI00786995.1 M12(Oxidation) CID 1.0000 0.0000 1 1 471 2.92 0.00 0 13 100 3 595.32208 1783.95169 -0.42 48.56 4534 4534 MS2 23/56 Linfeng_20120515_BRCA1_1.raw High mSTSPEAFLALR Unambiguous 3 3 IPI00296337.2;IPI00376215.2;IPI00786995.1 M1(Oxidation) CID 1.0000 0.0000 1 1 459 2.97 0.00 0 11 100 2 669.84009 1338.67290 0.46 45.33 3422 3422 MS2 15/22 Linfeng_20120515_BRCA1_3.raw IPI00007765.5 "Stress-70 protein, mitochondrial" 9.87 1 2 5 14 0.00 44.78 9.87 5 14 679 73.6 6.16 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High TTPSVVAFTADGER Unambiguous 1 1 IPI00007765.5 CID 1.0000 0.0000 1 1 538 2.01 0.00 0 16 100 2 725.86475 1450.72222 3.37 34.53 2219 2219 MS2 16/26 Linfeng_20120515_BRCA1_4.raw High VQQTVQDLFGR Unambiguous 2 2 IPI00007765.5;IPI00922694.1 CID 1.0000 0.0000 1 1 671 2.24 0.00 0 15 100 2 645.84387 1290.68047 0.26 39.99 2838 2838 MS2 10/20 Linfeng_20120515_BRCA1_4.raw High DAGQISGLNVLR Unambiguous 2 2 IPI00007765.5;IPI00922694.1 CID 1.0000 0.0000 1 1 577 2.37 0.00 0 4 100 2 621.84369 1242.68010 -0.03 39.60 2813 2813 MS2 11/22 Linfeng_20120515_BRCA1_4.raw High VINEPTAAALAYGLDK Unambiguous 1 1 IPI00007765.5 CID 1.0000 0.0000 1 1 627 2.64 0.00 0 9 100 3 549.29785 1645.87900 -0.39 44.21 3274 3274 MS2 23/60 Linfeng_20120515_BRCA1_4.raw High SDIGEVILVGGmTR Unambiguous 2 2 IPI00007765.5;IPI00922694.1 M12(Oxidation) CID 1.0000 0.0000 1 1 614 2.77 0.00 0 8 100 2 731.88275 1462.75823 0.77 42.74 3049 3049 MS2 14/26 Linfeng_20120515_BRCA1_4.raw High SDIGEVILVGGmTR Unambiguous 2 2 IPI00007765.5;IPI00922694.1 M12(Oxidation) CID 1.0000 0.0000 1 1 641 3.07 0.00 0 14 100 2 731.88245 1462.75762 0.36 42.08 2984 2984 MS2 16/26 Linfeng_20120515_BRCA1_4.raw High VINEPTAAALAYGLDK Unambiguous 1 1 IPI00007765.5 CID 1.0000 0.0000 1 1 628 3.14 0.00 0 0 100 3 549.29803 1645.87955 -0.06 44.59 3365 3365 MS2 23/60 Linfeng_20120515_BRCA1_4.raw High SDIGEVILVGGmTR Unambiguous 2 2 IPI00007765.5;IPI00922694.1 M12(Oxidation) CID 1.0000 0.0000 1 1 634 3.24 0.00 0 2 100 2 731.88239 1462.75749 0.27 42.25 3001 3001 MS2 16/26 Linfeng_20120515_BRCA1_4.raw High VINEPTAAALAYGLDK Unambiguous 1 1 IPI00007765.5 CID 1.0000 0.0000 1 1 642 3.36 0.00 0 12 100 3 549.29742 1645.87772 -1.17 44.43 3328 3328 MS2 25/60 Linfeng_20120515_BRCA1_4.raw High SDIGEVILVGGmTR Unambiguous 2 2 IPI00007765.5;IPI00922694.1 M12(Oxidation) CID 1.0000 0.0000 1 1 583 3.65 0.00 0 4 100 2 731.88293 1462.75859 1.02 42.66 3038 3038 MS2 19/26 Linfeng_20120515_BRCA1_4.raw High SDIGEVILVGGmTR Unambiguous 2 2 IPI00007765.5;IPI00922694.1 M12(Oxidation) CID 1.0000 0.0000 1 1 598 3.71 0.00 0 3 100 2 731.88287 1462.75847 0.94 42.70 3043 3043 MS2 18/26 Linfeng_20120515_BRCA1_4.raw High VINEPTAAALAYGLDK Unambiguous 1 1 IPI00007765.5 CID 1.0000 0.0000 1 1 550 4.02 0.00 0 0 100 2 823.44250 1645.87773 -1.16 43.99 3221 3221 MS2 18/30 Linfeng_20120515_BRCA1_4.raw High SDIGEVILVGGmTR Unambiguous 2 2 IPI00007765.5;IPI00922694.1 M12(Oxidation) CID 1.0000 0.0000 1 1 612 4.14 0.00 0 6 100 2 731.88275 1462.75823 0.77 42.53 3027 3027 MS2 18/26 Linfeng_20120515_BRCA1_4.raw High VINEPTAAALAYGLDK Unambiguous 1 1 IPI00007765.5 CID 1.0000 0.0000 1 1 525 4.41 0.00 0 4 100 2 823.44263 1645.87798 -1.01 45.04 3473 3473 MS2 19/30 Linfeng_20120515_BRCA1_4.raw IPI00007752.1 Tubulin beta-2C chain 6.97 1 0 3 6 14.35 6.97 3 6 445 49.8 4.89 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High ISEQFTAmFR Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 M8(Oxidation) CID 1.0000 0.0000 1 1 376 2.17 0.00 0 54 100 2 623.30212 1245.59697 2.95 36.21 3064 3064 MS2 12/18 Linfeng_20120515_BRCA1_5.raw High ISEQFTAmFR Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 M8(Oxidation) CID 1.0000 0.0000 1 1 380 2.24 0.00 0 55 100 2 623.30157 1245.59587 2.07 36.39 3097 3097 MS2 14/18 Linfeng_20120515_BRCA1_5.raw High YLTVAAVFR Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 CID 1.0000 0.0000 1 1 331 2.27 0.00 0 27 100 2 520.30072 1039.59416 0.61 47.83 5108 5108 MS2 15/16 Linfeng_20120515_BRCA1_5.raw High ImNTFSVVPSPK Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 M2(Oxidation) CID 1.0000 0.0000 1 1 561 2.44 0.00 0 27 100 2 668.35333 1335.69939 1.21 34.89 2785 2785 MS2 11/22 Linfeng_20120515_BRCA1_5.raw High ImNTFSVVPSPK Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 M2(Oxidation) CID 1.0000 0.0000 1 1 575 2.57 0.00 0 31 100 2 668.35370 1335.70012 1.76 34.81 2768 2768 MS2 12/22 Linfeng_20120515_BRCA1_5.raw High ImNTFSVVPSPK Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 M2(Oxidation) CID 1.0000 0.0000 1 1 565 2.67 0.00 0 17 100 2 668.35223 1335.69719 -0.43 34.25 2638 2638 MS2 11/22 Linfeng_20120515_BRCA1_5.raw IPI00023598.2 Tubulin beta-4 chain 6.98 1 0 3 6 14.35 6.98 3 6 444 49.6 4.88 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High ISEQFTAmFR Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 M8(Oxidation) CID 1.0000 0.0000 1 1 376 2.17 0.00 0 54 100 2 623.30212 1245.59697 2.95 36.21 3064 3064 MS2 12/18 Linfeng_20120515_BRCA1_5.raw High ISEQFTAmFR Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 M8(Oxidation) CID 1.0000 0.0000 1 1 380 2.24 0.00 0 55 100 2 623.30157 1245.59587 2.07 36.39 3097 3097 MS2 14/18 Linfeng_20120515_BRCA1_5.raw High YLTVAAVFR Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 CID 1.0000 0.0000 1 1 331 2.27 0.00 0 27 100 2 520.30072 1039.59416 0.61 47.83 5108 5108 MS2 15/16 Linfeng_20120515_BRCA1_5.raw High ImNTFSVVPSPK Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 M2(Oxidation) CID 1.0000 0.0000 1 1 561 2.44 0.00 0 27 100 2 668.35333 1335.69939 1.21 34.89 2785 2785 MS2 11/22 Linfeng_20120515_BRCA1_5.raw High ImNTFSVVPSPK Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 M2(Oxidation) CID 1.0000 0.0000 1 1 575 2.57 0.00 0 31 100 2 668.35370 1335.70012 1.76 34.81 2768 2768 MS2 12/22 Linfeng_20120515_BRCA1_5.raw High ImNTFSVVPSPK Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 M2(Oxidation) CID 1.0000 0.0000 1 1 565 2.67 0.00 0 17 100 2 668.35223 1335.69719 -0.43 34.25 2638 2638 MS2 11/22 Linfeng_20120515_BRCA1_5.raw IPI00647896.1 "Tubulin, beta" 8.33 1 0 3 6 14.35 8.33 3 6 372 41.7 4.91 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High ISEQFTAmFR Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 M8(Oxidation) CID 1.0000 0.0000 1 1 376 2.17 0.00 0 54 100 2 623.30212 1245.59697 2.95 36.21 3064 3064 MS2 12/18 Linfeng_20120515_BRCA1_5.raw High ISEQFTAmFR Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 M8(Oxidation) CID 1.0000 0.0000 1 1 380 2.24 0.00 0 55 100 2 623.30157 1245.59587 2.07 36.39 3097 3097 MS2 14/18 Linfeng_20120515_BRCA1_5.raw High YLTVAAVFR Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 CID 1.0000 0.0000 1 1 331 2.27 0.00 0 27 100 2 520.30072 1039.59416 0.61 47.83 5108 5108 MS2 15/16 Linfeng_20120515_BRCA1_5.raw High ImNTFSVVPSPK Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 M2(Oxidation) CID 1.0000 0.0000 1 1 561 2.44 0.00 0 27 100 2 668.35333 1335.69939 1.21 34.89 2785 2785 MS2 11/22 Linfeng_20120515_BRCA1_5.raw High ImNTFSVVPSPK Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 M2(Oxidation) CID 1.0000 0.0000 1 1 575 2.57 0.00 0 31 100 2 668.35370 1335.70012 1.76 34.81 2768 2768 MS2 12/22 Linfeng_20120515_BRCA1_5.raw High ImNTFSVVPSPK Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 M2(Oxidation) CID 1.0000 0.0000 1 1 565 2.67 0.00 0 17 100 2 668.35223 1335.69719 -0.43 34.25 2638 2638 MS2 11/22 Linfeng_20120515_BRCA1_5.raw IPI00645452.1 "Tubulin, beta" 7.28 1 0 3 6 14.35 7.28 3 6 426 47.7 4.81 A2 B2 Sequence PSM Ambiguity # Proteins # Protein Groups Protein Group Accessions Modifications Activation Type ?Score ?Cn Rank Search Engine Rank Peptides Matched XCorr Probability # Missed Cleavages Isolation Interference [%] Ion Inject Time [ms] Charge m/z [Da] MH+ [Da] ?M [ppm] RT [min] First Scan Last Scan MS Order Ions Matched Spectrum File High ISEQFTAmFR Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 M8(Oxidation) CID 1.0000 0.0000 1 1 376 2.17 0.00 0 54 100 2 623.30212 1245.59697 2.95 36.21 3064 3064 MS2 12/18 Linfeng_20120515_BRCA1_5.raw High ISEQFTAmFR Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 M8(Oxidation) CID 1.0000 0.0000 1 1 380 2.24 0.00 0 55 100 2 623.30157 1245.59587 2.07 36.39 3097 3097 MS2 14/18 Linfeng_20120515_BRCA1_5.raw High YLTVAAVFR Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 CID 1.0000 0.0000 1 1 331 2.27 0.00 0 27 100 2 520.30072 1039.59416 0.61 47.83 5108 5108 MS2 15/16 Linfeng_20120515_BRCA1_5.raw High ImNTFSVVPSPK Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 M2(Oxidation) CID 1.0000 0.0000 1 1 561 2.44 0.00 0 27 100 2 668.35333 1335.69939 1.21 34.89 2785 2785 MS2 11/22 Linfeng_20120515_BRCA1_5.raw High ImNTFSVVPSPK Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 M2(Oxidation) CID 1.0000 0.0000 1 1 575 2.57 0.00 0 31 100 2 668.35370 1335.70012 1.76 34.81 2768 2768 MS2 12/22 Linfeng_20120515_BRCA1_5.raw High ImNTFSVVPSPK Unambiguous 7 7 IPI00007752.1;IPI00023598.2;IPI00647896.1;IPI00645452.1;IPI00909140.7;IPI00930130.2;IPI00956657.1 M2(Oxidation) CID 1.0000 0.0000 1 1 565 2.67 0.00 0 17 100 2 668.35223 1335.69719 -0.43 34.25 2638 2638 MS2 11/22 Linfeng_20120515_BRCA1_5.raw