Antibody against Homo sapiens KDM5A

Homo sapiens
A549, HepG2, K562, endothelial cell of umbilical vein
characterized to standards with exemption
Homo sapiens
not characterized to standards
Source (vendor)
Product ID
Lot ID
Characterized targets
KDM5A (Homo sapiens)
Antigen description
lysine (K)-specific demethylase 5A; retinoblastoma-binding protein 2, Jumonji, AT rich interactive domain 1A (RBBP2-like), jumonji AT rich interactive domain 1A
bradley-bernstein:PchAb 1221
External resources


KDM5A (Homo sapiens)
Method: ChIP-seq comparison
exempt from standards
This validation relies on the use of a chromatin remodeler and a functionally relevant histone modifier in HepG2 cells, which demonstrate highly similar patterns of enrichment obtained with each antibody. The first track shown used an antibody to H3K4me3 (PchAb 1306, ENCAB848NER), previously characterized to Encode standards, and the second track shown used an antibody to KDM5A (PchAb 1221, ENCAB914RSH).
Submitter comment
The Antibody Review Board reviewed this document and the over all experiments to determine the quality of the data. 03-5-20018
Reviewer comment
For HepG2, I would support the release of this dataset. The western blot is good, the ChIP-seq correlation between KDM5A and H3K4me3 is good, and the actual data tracks look reasonable. The borderline IDR is due to the fact that this is not a direct DNA binding protein. For GM12878, I would not support the release of the dataset. The ChIP-seq tracks are not good enough (at least to my eye). I note that there was no correlation shown for the data between KDM5A and H3K4me3 in GM12878. I suspect that the correlation would not pass for this dataset.
Submitted by
Nina Farrell
Bradley Bernstein, Broad
KDM5A (Homo sapiens)
K562HepG2GM12878endothelial cell of umbilical veinA549
Method: immunoblot
Attachment from submitter
Nuclear lysates from K562 (10ug), HepG2 (10ug), GM12878 (7ug), HUVEC (10ug), were loaded into a 3-8% Tris Acetate gel in 1X TA running buffer. After separation, the samples were transferred to a nitocellulose membrane using the iblot system. Membrane was blocked for an hour in room temperature, with 5% BSA in TBS-T and blotted with primary antibody in the appropriate concentration over night at 4c. Membrane was washed and blotted with secondary HRP-conjugated antibody. Detection was made with Optiblot ECL Detect Kit (ab133406) for 2 min. a single band of the expected size (~196kDa) was detected.
Reviewer comment
Peggy: I would approve exemption of the A549 data . The tracks are convincing and the antibody has been characterized in other cell lines.
Submitted by
Noam Shoresh
Bradley Bernstein, Broad