Current ENCODE Experiment Guidelines

Antibody Characterization Guidelines

Antibody Characterization Standards for RNA binding proteins (November 2016)

Antibody Characterization Standards for antibodies used in fRIP assays (November 2016)

Antibody Characterization Standards for histone modifications and chromatin-associated proteins (October 2016)

Antibody Characterization Standards for transcription factors (May 2016)

Experiment Guidelines

ENCODE Experimental Guidelines for ENCODE3 RNA-seq (Includes long and small RNA-seq, CAGE, RAMPAGE) (Jauary 2017)

ENCODE Experimental Guidelines for ENCODE3 DNase-seq (Jaunary 2017)

ENCODE Experimental Guidelines for ENCODE3 eCLIP (January 2017)

ENCODE Experimental Guidelines for ENCODE3 ChIP-seq (January 2017)

ENCODE Characterization Guidelines for ChIP-seq using Epitope-tagged Transcription Factors (January 2017)

ENCODE Experimental Guidelines for ENCODE4 ChIA-PET v2.0 (July 2017)

ENCODE Standards and Guidelines for Whole Genome Shotgun Bisulfite Sequencing (WGBS) (July 2015)

ENCODE Experimental Guidelines for ENCODE4 HiC v1.0 (January 2018)

For previous versions of experiment and antibody guidelines, click here