RNA-seq of long RNAs (single-end, unstranded)

Status: released
Title: RNA-seq of long RNAs (single-end, unstranded)
Assays: RNA-seq, single-cell RNA sequencing assay
Description: Pipeline for single-ended unstranded data bulk RNA-seq data as developed by the ENCODE RNA Working Group. RNA libraries generated from mRNAs (poly-A(+)), rRNA-depleted total RNA, or poly-A(-) populations that are size-selected to be longer than approximately 200 bp may be run through this pipeline. More information regarding uniform pipeline restrictions, references used for this pipeline, and exogenous RNA spike-in controls are described in the pipelines overview document.
Lab: ENCODE Processing Pipeline
Award PI: J. Michael Cherry, Stanford
Source: https://github.com/ENCODE-DCC/long-rna-seq-pipeline
Pipeline standards: Bulk RNA-seq Data Standards

Description excerpt: Bulk RNA-seq pipeline: Includes overview, references, and spike-ins…

Description: Bulk RNA-seq pipeline: Includes overview, references, and spike-ins information about the pipeline
Submitted by: Kathrina Onate
Lab: J. Michael Cherry, Stanford
Grant: U24HG009397