Stem cell differentiation

H9 Stem Cells
Data generated for cell types differentiated from the H9 human embryonic stem cell line.
Endoderm
Mesoderm
Ectoderm
Stem
Mesoderm + Ectoderm
Assay
Biosample
Histone and Mint ChIP-seq
Histone and Mint ChIP-seq
TF ChIP-seq
TF ChIP-seq
ChIA-PET
ChIA-PET
H3K4me1
target for Histone and Mint ChIP-seq Assay
H3K4me3
target for Histone and Mint ChIP-seq Assay
H3K36me3
target for Histone and Mint ChIP-seq Assay
H3K9me3
target for Histone and Mint ChIP-seq Assay
H3K27me3
target for Histone and Mint ChIP-seq Assay
H2AFZ
target for Histone and Mint ChIP-seq Assay
H3K27ac
target for Histone and Mint ChIP-seq Assay
H3K4me2
target for Histone and Mint ChIP-seq Assay
H3K79me2
target for Histone and Mint ChIP-seq Assay
H3K9ac
target for Histone and Mint ChIP-seq Assay
H4K20me1
target for Histone and Mint ChIP-seq Assay
H3F3A
target for Histone and Mint ChIP-seq Assay
H3K9me2
target for Histone and Mint ChIP-seq Assay
CTCF
target for TF ChIP-seq Assay
EZH2
target for TF ChIP-seq Assay
EZH2phosphoT487
target for TF ChIP-seq Assay
DNase-seq
Assay
microRNA-seq
Assay
total RNA-seq
Assay
Repli-chip
Assay
snATAC-seq
Assay
long read RNA-seq
Assay
WGBS
Assay
DNAme array
Assay
RAMPAGE
Assay
microRNA counts
Assay
small RNA-seq
Assay
RAD21
target for ChIA-PET Assay
polyA plus RNA-seq
Assay
genotyping array
Assay
neural progenitor cell
Biosample
Search in vitro differentiated cells, neural progenitor cell for Mint-ChIP-seq, H3K4me1 Search in vitro differentiated cells, neural progenitor cell for Mint-ChIP-seq, H3K4me3 Search in vitro differentiated cells, neural progenitor cell for Mint-ChIP-seq, H3K36me3 Search in vitro differentiated cells, neural progenitor cell for Mint-ChIP-seq, H3K9me3 Search in vitro differentiated cells, neural progenitor cell for Mint-ChIP-seq, H3K27me3 Search in vitro differentiated cells, neural progenitor cell for Histone ChIP-seq, H2AFZ Search in vitro differentiated cells, neural progenitor cell for Mint-ChIP-seq, H3K27ac Search in vitro differentiated cells, neural progenitor cell for Histone ChIP-seq, H3K4me2 Search in vitro differentiated cells, neural progenitor cell for Histone ChIP-seq, H3K79me2 Search in vitro differentiated cells, neural progenitor cell for Histone ChIP-seq, H3K9ac Search in vitro differentiated cells, neural progenitor cell for Histone ChIP-seq, H4K20me1 Search in vitro differentiated cells, neural progenitor cell for Histone ChIP-seq, H3F3A Search in vitro differentiated cells, neural progenitor cell for TF ChIP-seq, CTCF Search in vitro differentiated cells, neural progenitor cell for TF ChIP-seq, EZH2 Search in vitro differentiated cells, neural progenitor cell for TF ChIP-seq, EZH2phosphoT487 Search in vitro differentiated cells, neural progenitor cell for DNase-seq Search in vitro differentiated cells, neural progenitor cell for microRNA-seq Search in vitro differentiated cells, neural progenitor cell for total RNA-seq Search in vitro differentiated cells, neural progenitor cell for Repli-chip Search in vitro differentiated cells, neural progenitor cell for DNAme array Search in vitro differentiated cells, neural progenitor cell for RAMPAGE Search in vitro differentiated cells, neural progenitor cell for microRNA counts Search in vitro differentiated cells, neural progenitor cell for small RNA-seq Search in vitro differentiated cells, neural progenitor cell for ChIA-PET, RAD21 
hepatocyte
Biosample
Search in vitro differentiated cells, hepatocyte for Histone ChIP-seq, H3K4me1 Search in vitro differentiated cells, hepatocyte for Histone ChIP-seq, H3K4me3 Search in vitro differentiated cells, hepatocyte for Histone ChIP-seq, H3K36me3 Search in vitro differentiated cells, hepatocyte for Histone ChIP-seq, H3K9me3 Search in vitro differentiated cells, hepatocyte for Histone ChIP-seq, H3K27me3 Search in vitro differentiated cells, hepatocyte for Histone ChIP-seq, H2AFZ Search in vitro differentiated cells, hepatocyte for Histone ChIP-seq, H3K27ac Search in vitro differentiated cells, hepatocyte for Histone ChIP-seq, H3K4me2 Search in vitro differentiated cells, hepatocyte for Histone ChIP-seq, H3K79me2 Search in vitro differentiated cells, hepatocyte for Histone ChIP-seq, H3K9ac Search in vitro differentiated cells, hepatocyte for Histone ChIP-seq, H4K20me1 Search in vitro differentiated cells, hepatocyte for Histone ChIP-seq, H3K9me2 Search in vitro differentiated cells, hepatocyte for TF ChIP-seq, CTCF Search in vitro differentiated cells, hepatocyte for TF ChIP-seq, EZH2 Search in vitro differentiated cells, hepatocyte for TF ChIP-seq, EZH2phosphoT487 Search in vitro differentiated cells, hepatocyte for DNase-seq Search in vitro differentiated cells, hepatocyte for microRNA-seq Search in vitro differentiated cells, hepatocyte for total RNA-seq Search in vitro differentiated cells, hepatocyte for WGBS Search in vitro differentiated cells, hepatocyte for DNAme array Search in vitro differentiated cells, hepatocyte for RAMPAGE Search in vitro differentiated cells, hepatocyte for microRNA counts Search in vitro differentiated cells, hepatocyte for small RNA-seq Search in vitro differentiated cells, hepatocyte for ChIA-PET, RAD21 Search in vitro differentiated cells, hepatocyte for polyA plus RNA-seq 
smooth muscle cell
Biosample
Search in vitro differentiated cells, smooth muscle cell for Histone ChIP-seq, H3K4me1 Search in vitro differentiated cells, smooth muscle cell for Histone ChIP-seq, H3K4me3 Search in vitro differentiated cells, smooth muscle cell for Histone ChIP-seq, H3K36me3 Search in vitro differentiated cells, smooth muscle cell for Histone ChIP-seq, H3K9me3 Search in vitro differentiated cells, smooth muscle cell for Histone ChIP-seq, H3K27me3 Search in vitro differentiated cells, smooth muscle cell for Histone ChIP-seq, H2AFZ Search in vitro differentiated cells, smooth muscle cell for Histone ChIP-seq, H3K27ac Search in vitro differentiated cells, smooth muscle cell for Histone ChIP-seq, H3K4me2 Search in vitro differentiated cells, smooth muscle cell for Histone ChIP-seq, H3K79me2 Search in vitro differentiated cells, smooth muscle cell for Histone ChIP-seq, H3K9ac Search in vitro differentiated cells, smooth muscle cell for Histone ChIP-seq, H4K20me1 Search in vitro differentiated cells, smooth muscle cell for Histone ChIP-seq, H3F3A Search in vitro differentiated cells, smooth muscle cell for TF ChIP-seq, CTCF Search in vitro differentiated cells, smooth muscle cell for microRNA-seq Search in vitro differentiated cells, smooth muscle cell for total RNA-seq Search in vitro differentiated cells, smooth muscle cell for Repli-chip Search in vitro differentiated cells, smooth muscle cell for WGBS Search in vitro differentiated cells, smooth muscle cell for DNAme array Search in vitro differentiated cells, smooth muscle cell for RAMPAGE Search in vitro differentiated cells, smooth muscle cell for microRNA counts Search in vitro differentiated cells, smooth muscle cell for small RNA-seq Search in vitro differentiated cells, smooth muscle cell for polyA plus RNA-seq Search in vitro differentiated cells, smooth muscle cell for genotyping array 
neural crest cell
Biosample
Search in vitro differentiated cells, neural crest cell for Mint-ChIP-seq, H3K4me1 Search in vitro differentiated cells, neural crest cell for Mint-ChIP-seq, H3K4me3 Search in vitro differentiated cells, neural crest cell for Mint-ChIP-seq, H3K36me3 Search in vitro differentiated cells, neural crest cell for Mint-ChIP-seq, H3K9me3 Search in vitro differentiated cells, neural crest cell for Mint-ChIP-seq, H3K27me3 Search in vitro differentiated cells, neural crest cell for Mint-ChIP-seq, H3K27ac Search in vitro differentiated cells, neural crest cell for TF ChIP-seq, CTCF Search in vitro differentiated cells, neural crest cell for DNase-seq Search in vitro differentiated cells, neural crest cell for microRNA-seq Search in vitro differentiated cells, neural crest cell for total RNA-seq Search in vitro differentiated cells, neural crest cell for Repli-chip Search in vitro differentiated cells, neural crest cell for snATAC-seq Search in vitro differentiated cells, neural crest cell for long read RNA-seq 
chondrocyte
Biosample
Search in vitro differentiated cells, chondrocyte for Mint-ChIP-seq, H3K4me1 Search in vitro differentiated cells, chondrocyte for Mint-ChIP-seq, H3K4me3 Search in vitro differentiated cells, chondrocyte for Mint-ChIP-seq, H3K36me3 Search in vitro differentiated cells, chondrocyte for Mint-ChIP-seq, H3K9me3 Search in vitro differentiated cells, chondrocyte for Mint-ChIP-seq, H3K27me3 Search in vitro differentiated cells, chondrocyte for Mint-ChIP-seq, H3K27ac Search in vitro differentiated cells, chondrocyte for TF ChIP-seq, CTCF Search in vitro differentiated cells, chondrocyte for DNase-seq Search in vitro differentiated cells, chondrocyte for microRNA-seq Search in vitro differentiated cells, chondrocyte for total RNA-seq Search in vitro differentiated cells, chondrocyte for snATAC-seq Search in vitro differentiated cells, chondrocyte for long read RNA-seq 
endodermal cell
Biosample
Search in vitro differentiated cells, endodermal cell for Mint-ChIP-seq, H3K4me1 Search in vitro differentiated cells, endodermal cell for Mint-ChIP-seq, H3K4me3 Search in vitro differentiated cells, endodermal cell for Mint-ChIP-seq, H3K36me3 Search in vitro differentiated cells, endodermal cell for Mint-ChIP-seq, H3K9me3 Search in vitro differentiated cells, endodermal cell for Mint-ChIP-seq, H3K27me3 Search in vitro differentiated cells, endodermal cell for Mint-ChIP-seq, H3K27ac Search in vitro differentiated cells, endodermal cell for TF ChIP-seq, CTCF Search in vitro differentiated cells, endodermal cell for DNase-seq Search in vitro differentiated cells, endodermal cell for microRNA-seq Search in vitro differentiated cells, endodermal cell for total RNA-seq Search in vitro differentiated cells, endodermal cell for snATAC-seq Search in vitro differentiated cells, endodermal cell for long read RNA-seq 
mesothelial cell of epicardium
Biosample
Search in vitro differentiated cells, mesothelial cell of epicardium for Mint-ChIP-seq, H3K4me1 Search in vitro differentiated cells, mesothelial cell of epicardium for Mint-ChIP-seq, H3K4me3 Search in vitro differentiated cells, mesothelial cell of epicardium for Mint-ChIP-seq, H3K36me3 Search in vitro differentiated cells, mesothelial cell of epicardium for Mint-ChIP-seq, H3K9me3 Search in vitro differentiated cells, mesothelial cell of epicardium for Mint-ChIP-seq, H3K27me3 Search in vitro differentiated cells, mesothelial cell of epicardium for Mint-ChIP-seq, H3K27ac Search in vitro differentiated cells, mesothelial cell of epicardium for TF ChIP-seq, CTCF Search in vitro differentiated cells, mesothelial cell of epicardium for DNase-seq Search in vitro differentiated cells, mesothelial cell of epicardium for microRNA-seq Search in vitro differentiated cells, mesothelial cell of epicardium for total RNA-seq Search in vitro differentiated cells, mesothelial cell of epicardium for snATAC-seq 
osteocyte
Biosample
Search in vitro differentiated cells, osteocyte for Mint-ChIP-seq, H3K4me1 Search in vitro differentiated cells, osteocyte for Mint-ChIP-seq, H3K4me3 Search in vitro differentiated cells, osteocyte for Mint-ChIP-seq, H3K36me3 Search in vitro differentiated cells, osteocyte for Mint-ChIP-seq, H3K9me3 Search in vitro differentiated cells, osteocyte for Mint-ChIP-seq, H3K27me3 Search in vitro differentiated cells, osteocyte for Mint-ChIP-seq, H3K27ac Search in vitro differentiated cells, osteocyte for TF ChIP-seq, CTCF Search in vitro differentiated cells, osteocyte for DNase-seq Search in vitro differentiated cells, osteocyte for microRNA-seq Search in vitro differentiated cells, osteocyte for total RNA-seq Search in vitro differentiated cells, osteocyte for snATAC-seq Search in vitro differentiated cells, osteocyte for long read RNA-seq 
progenitor cell of endocrine pancreas
Biosample
Search in vitro differentiated cells, progenitor cell of endocrine pancreas for Mint-ChIP-seq, H3K4me1 Search in vitro differentiated cells, progenitor cell of endocrine pancreas for Mint-ChIP-seq, H3K4me3 Search in vitro differentiated cells, progenitor cell of endocrine pancreas for Mint-ChIP-seq, H3K36me3 Search in vitro differentiated cells, progenitor cell of endocrine pancreas for Mint-ChIP-seq, H3K9me3 Search in vitro differentiated cells, progenitor cell of endocrine pancreas for Mint-ChIP-seq, H3K27me3 Search in vitro differentiated cells, progenitor cell of endocrine pancreas for Mint-ChIP-seq, H3K27ac Search in vitro differentiated cells, progenitor cell of endocrine pancreas for TF ChIP-seq, CTCF Search in vitro differentiated cells, progenitor cell of endocrine pancreas for DNase-seq Search in vitro differentiated cells, progenitor cell of endocrine pancreas for microRNA-seq Search in vitro differentiated cells, progenitor cell of endocrine pancreas for total RNA-seq Search in vitro differentiated cells, progenitor cell of endocrine pancreas for snATAC-seq Search in vitro differentiated cells, progenitor cell of endocrine pancreas for long read RNA-seq 
type B pancreatic cell
Biosample
Search in vitro differentiated cells, type B pancreatic cell for Mint-ChIP-seq, H3K4me1 Search in vitro differentiated cells, type B pancreatic cell for Mint-ChIP-seq, H3K4me3 Search in vitro differentiated cells, type B pancreatic cell for Mint-ChIP-seq, H3K36me3 Search in vitro differentiated cells, type B pancreatic cell for Mint-ChIP-seq, H3K9me3 Search in vitro differentiated cells, type B pancreatic cell for Mint-ChIP-seq, H3K27me3 Search in vitro differentiated cells, type B pancreatic cell for Mint-ChIP-seq, H3K27ac Search in vitro differentiated cells, type B pancreatic cell for TF ChIP-seq, CTCF Search in vitro differentiated cells, type B pancreatic cell for DNase-seq Search in vitro differentiated cells, type B pancreatic cell for microRNA-seq Search in vitro differentiated cells, type B pancreatic cell for total RNA-seq Search in vitro differentiated cells, type B pancreatic cell for snATAC-seq Search in vitro differentiated cells, type B pancreatic cell for long read RNA-seq 
nephron progenitor cell
Biosample
Search in vitro differentiated cells, nephron progenitor cell for Mint-ChIP-seq, H3K4me1 Search in vitro differentiated cells, nephron progenitor cell for Mint-ChIP-seq, H3K4me3 Search in vitro differentiated cells, nephron progenitor cell for Mint-ChIP-seq, H3K36me3 Search in vitro differentiated cells, nephron progenitor cell for Mint-ChIP-seq, H3K9me3 Search in vitro differentiated cells, nephron progenitor cell for Mint-ChIP-seq, H3K27me3 Search in vitro differentiated cells, nephron progenitor cell for Mint-ChIP-seq, H3K27ac Search in vitro differentiated cells, nephron progenitor cell for TF ChIP-seq, CTCF Search in vitro differentiated cells, nephron progenitor cell for DNase-seq 
neuronal stem cell
Biosample
Search in vitro differentiated cells, neuronal stem cell for Histone ChIP-seq, H3K4me1 Search in vitro differentiated cells, neuronal stem cell for Histone ChIP-seq, H3K4me3 Search in vitro differentiated cells, neuronal stem cell for Histone ChIP-seq, H3K36me3 Search in vitro differentiated cells, neuronal stem cell for Histone ChIP-seq, H3K9me3 Search in vitro differentiated cells, neuronal stem cell for Histone ChIP-seq, H3K27me3 Search in vitro differentiated cells, neuronal stem cell for Histone ChIP-seq, H2AFZ Search in vitro differentiated cells, neuronal stem cell for WGBS 
neuron
Biosample
Search in vitro differentiated cells, neuron for Histone ChIP-seq, H3K4me1 Search in vitro differentiated cells, neuron for Histone ChIP-seq, H3K4me3 Search in vitro differentiated cells, neuron for Histone ChIP-seq, H3K36me3 Search in vitro differentiated cells, neuron for Histone ChIP-seq, H3K9me3 Search in vitro differentiated cells, neuron for Histone ChIP-seq, H3K27me3 Search in vitro differentiated cells, neuron for Histone ChIP-seq, H2AFZ 
mid-neurogenesis radial glial cells
Biosample
Search in vitro differentiated cells, mid-neurogenesis radial glial cells for Histone ChIP-seq, H3K4me1 Search in vitro differentiated cells, mid-neurogenesis radial glial cells for Histone ChIP-seq, H3K4me3 Search in vitro differentiated cells, mid-neurogenesis radial glial cells for Histone ChIP-seq, H3K9me3 Search in vitro differentiated cells, mid-neurogenesis radial glial cells for Histone ChIP-seq, H3K27me3 
neuroepithelial stem cell
Biosample
Search in vitro differentiated cells, neuroepithelial stem cell for Histone ChIP-seq, H3K4me1 Search in vitro differentiated cells, neuroepithelial stem cell for Histone ChIP-seq, H3K4me3 Search in vitro differentiated cells, neuroepithelial stem cell for Histone ChIP-seq, H3K36me3 Search in vitro differentiated cells, neuroepithelial stem cell for Histone ChIP-seq, H3K27ac 
radial glial cell
Biosample
Search in vitro differentiated cells, radial glial cell for Histone ChIP-seq, H3K4me1 Search in vitro differentiated cells, radial glial cell for Histone ChIP-seq, H3K4me3 Search in vitro differentiated cells, radial glial cell for Histone ChIP-seq, H3K36me3 Search in vitro differentiated cells, radial glial cell for Histone ChIP-seq, H3K9me3 
ecto neural progenitor cell
Biosample
Search in vitro differentiated cells, ecto neural progenitor cell for DNase-seq 
islet precursor cell
Biosample
Search in vitro differentiated cells, islet precursor cell for DNase-seq 
lateral mesodermal cell
Biosample
Search in vitro differentiated cells, lateral mesodermal cell for Repli-chip 
mesenchymal stem cell
Biosample
Search in vitro differentiated cells, mesenchymal stem cell for Repli-chip 
mesothelial cell
Biosample
Search in vitro differentiated cells, mesothelial cell for Repli-chip 
splanchnic mesodermal cell
Biosample
Search in vitro differentiated cells, splanchnic mesodermal cell for Repli-chip