Summary for ENCSR654ORD
doi:10.17989/ENCSR654ORD
Summary
- Status
- released
- Description
- Reference epigenome for human transverse colon (51 year old female)
- Donor diversity
- single
- Assay
- ChIP-seq, RNA-seq, small RNA-seq, DNase-seq, ATAC-seq
- Target
- POLR2AphosphoS5, H3K4me1, H3K27ac, H3K36me3, H3K27me3, H3K9me3, H3K4me3, POLR2A, CTCF
- Biosample summary
- Homo sapiens transverse colon tissue female adult (51 years)
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
- Tags
Experiments in ENCSR654ORD
Experiments
12 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR604QMH | ChIP-seq | H3K27me3 | Homo sapiens transverse colon tissue female adult (51 years) | Bradley Bernstein, Broad | released | |
| ENCSR488YXS | ChIP-seq | H3K36me3 | Homo sapiens transverse colon tissue female adult (51 years) | Bradley Bernstein, Broad | released | |
| ENCSR500QVK | ChIP-seq | H3K4me1 | Homo sapiens transverse colon tissue female adult (51 years) | Bradley Bernstein, Broad | released | |
| ENCSR315EZG | ChIP-seq | H3K4me3 | Homo sapiens transverse colon tissue female adult (51 years) | Bradley Bernstein, Broad | released | |
| ENCSR792VLP | ChIP-seq | H3K27ac | Homo sapiens transverse colon tissue female adult (51 years) | Bradley Bernstein, Broad | released | |
| ENCSR974HQI | ChIP-seq | POLR2A | Homo sapiens transverse colon tissue female adult (51 years) | Michael Snyder, Stanford | released | |
| ENCSR170NMC | ChIP-seq | POLR2AphosphoS5 | Homo sapiens transverse colon tissue female adult (51 years) | Richard Myers, HAIB | released | |
| ENCSR403SZN | RNA-seq | Homo sapiens transverse colon tissue female adult (51 years) | Thomas Gingeras, CSHL | released | ||
| ENCSR760QZM | DNase-seq | Homo sapiens transverse colon tissue female adult (51 years) | John Stamatoyannopoulos, UW | released | ||
| ENCSR386HAZ | ATAC-seq | Homo sapiens transverse colon tissue female adult (51 years) | Michael Snyder, Stanford | released | ||
| ENCSR183YQY | small RNA-seq | Homo sapiens transverse colon tissue female adult (51 years) | Thomas Gingeras, CSHL | released | ||
| ENCSR449SEF | ChIP-seq | CTCF | Homo sapiens transverse colon tissue female adult (51 years) | Bradley Bernstein, Broad | released |
Control experiments
3 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR384KIB | input library | Homo sapiens transverse colon tissue female adult (51 years) | Bradley Bernstein, Broad | released | |
| ENCSR457NQR | input library | Homo sapiens transverse colon tissue female adult (51 years) | Michael Snyder, Stanford | released | |
| ENCSR602GPF | input library | Homo sapiens transverse colon tissue female adult (51 years) | Richard Myers, HAIB | released |