Summary for ENCSR606SSE
doi:10.17989/ENCSR606SSE
Summary
- Status
- released
- Description
- Reference epigenome for human esophagus squamous epithelium (53 year old female)
- Donor diversity
- single
- Assay
- whole-genome shotgun bisulfite sequencing, small RNA-seq, RNA-seq, ChIP-seq
- Target
- H3K27me3, H3K4me1, H3K27ac, H3K36me3, POLR2A, CTCF, H3K9me3, H3K4me3
- Biosample summary
- Homo sapiens esophagus squamous epithelium tissue female adult (53 years)
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
- Tags
Experiments in ENCSR606SSE
Experiments
11 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR057BFO | ChIP-seq | H3K27me3 | Homo sapiens esophagus squamous epithelium tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR121RSS | ChIP-seq | H3K4me1 | Homo sapiens esophagus squamous epithelium tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR515MHO | whole-genome shotgun bisulfite sequencing | Homo sapiens esophagus squamous epithelium tissue female adult (53 years) | Richard Myers, HAIB | released | ||
| ENCSR351OTL | RNA-seq | Homo sapiens esophagus squamous epithelium tissue female adult (53 years) | Thomas Gingeras, CSHL | released | ||
| ENCSR379GPS | small RNA-seq | Homo sapiens esophagus squamous epithelium tissue female adult (53 years) | Thomas Gingeras, CSHL | released | ||
| ENCSR078ZGC | ChIP-seq | H3K36me3 | Homo sapiens esophagus squamous epithelium tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR508UPW | ChIP-seq | H3K4me3 | Homo sapiens esophagus squamous epithelium tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR057YVO | ChIP-seq | H3K9me3 | Homo sapiens esophagus squamous epithelium tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR909UAG | ChIP-seq | H3K27ac | Homo sapiens esophagus squamous epithelium tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR756URL | ChIP-seq | CTCF | Homo sapiens esophagus squamous epithelium tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR147PYL | ChIP-seq | POLR2A | Homo sapiens esophagus squamous epithelium tissue female adult (53 years) | Michael Snyder, Stanford | released |
Control experiments
2 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR652EPR | input library | Homo sapiens esophagus squamous epithelium tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR746FMO | input library | Homo sapiens esophagus squamous epithelium tissue female adult (53 years) | Michael Snyder, Stanford | released |