Summary for ENCSR597HBM
doi:10.17989/ENCSR597HBM
Summary
- Status
- released
- Description
- Reference epigenome for human gastroesophageal sphincter (53 year old female)
- Donor diversity
- single
- Assay
- whole-genome shotgun bisulfite sequencing, ATAC-seq, small RNA-seq, ChIP-seq, RNA-seq
- Target
- H3K4me1, H3K27ac, POLR2A, CTCF, H3K9me3, H3K4me3
- Biosample summary
- Homo sapiens gastroesophageal sphincter tissue female adult (53 years)
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
- Tags
Experiments in ENCSR597HBM
Experiments
10 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR025CGR | ChIP-seq | H3K9me3 | Homo sapiens gastroesophageal sphincter tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR097EEA | ChIP-seq | POLR2A | Homo sapiens gastroesophageal sphincter tissue female adult (53 years) | Michael Snyder, Stanford | released | |
| ENCSR206ETG | ChIP-seq | CTCF | Homo sapiens gastroesophageal sphincter tissue female adult (53 years) | Michael Snyder, Stanford | released | |
| ENCSR510NXV | ChIP-seq | H3K4me3 | Homo sapiens gastroesophageal sphincter tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR670REK | ATAC-seq | Homo sapiens gastroesophageal sphincter tissue female adult (53 years) | Michael Snyder, Stanford | released | ||
| ENCSR677LBH | ChIP-seq | H3K27ac | Homo sapiens gastroesophageal sphincter tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR740YMS | RNA-seq | Homo sapiens gastroesophageal sphincter tissue female adult (53 years) | Thomas Gingeras, CSHL | released | ||
| ENCSR839GNN | whole-genome shotgun bisulfite sequencing | Homo sapiens gastroesophageal sphincter tissue female adult (53 years) | Richard Myers, HAIB | released | ||
| ENCSR872WVR | ChIP-seq | H3K4me1 | Homo sapiens gastroesophageal sphincter tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR998CRC | small RNA-seq | Homo sapiens gastroesophageal sphincter tissue female adult (53 years) | Thomas Gingeras, CSHL | released |
Control experiments
2 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR178MWD | input library | Homo sapiens gastroesophageal sphincter tissue female adult (53 years) | Bradley Bernstein, Broad | released | |
| ENCSR361LSG | input library | Homo sapiens gastroesophageal sphincter tissue female adult (53 years) | Michael Snyder, Stanford | released |