Summary for ENCSR296YDZ

doi:10.17989/ENCSR296YDZ

Summary

Status
released
Description
Reference epigenome for mouse forebrain (12.5 day embryonic)
Donor diversity
single
Assay
whole-genome shotgun bisulfite sequencing, ATAC-seq, polyA plus RNA-seq, ChIP-seq, microRNA-seq
Target
H3K36me3, H3K4me3, H3K27ac, H3K9ac, H3K9me3, H3K27me3, H3K4me1, H3K4me2
Biosample summary
Mus musculus strain B6NCrl forebrain tissue embryo (12.5 days)
Diseases
Not reported

Attribution

ENCODE3 project
Lab
ENCODE Consortium
Award
U41HG006992 (J. Michael Cherry, Stanford)
Project
ENCODE
External resources

Experiments in ENCSR296YDZ

Experiments
12 experiments
Accession
Assay
Target
Biosample summary
Lab
Status
Cart
ENCSR559FAJATAC-seqMus musculus strain B6NCrl forebrain tissue embryo (12.5 days)Bing Ren, UCSD
released
ENCSR715QTVmicroRNA-seqMus musculus strain B6NCrl forebrain tissue embryo (12.5 days)Ali Mortazavi, UCI
released
ENCSR243JOLChIP-seqH3K4me1Mus musculus strain B6NCrl forebrain tissue embryo (12.5 days)Bing Ren, UCSD
released
ENCSR782SUWChIP-seqH3K4me2Mus musculus strain B6NCrl forebrain tissue embryo (12.5 days)Bing Ren, UCSD
released
ENCSR527EUEChIP-seqH3K4me3Mus musculus strain B6NCrl forebrain tissue embryo (12.5 days)Bing Ren, UCSD
released
ENCSR161UUYChIP-seqH3K9acMus musculus strain B6NCrl forebrain tissue embryo (12.5 days)Bing Ren, UCSD
released
ENCSR966AIBChIP-seqH3K27acMus musculus strain B6NCrl forebrain tissue embryo (12.5 days)Bing Ren, UCSD
released
ENCSR297CHDChIP-seqH3K27me3Mus musculus strain B6NCrl forebrain tissue embryo (12.5 days)Bing Ren, UCSD
released
ENCSR345DDIChIP-seqH3K36me3Mus musculus strain B6NCrl forebrain tissue embryo (12.5 days)Bing Ren, UCSD
released
ENCSR634GFJChIP-seqH3K9me3Mus musculus strain B6NCrl forebrain tissue embryo (12.5 days)Bing Ren, UCSD
released
ENCSR007JSPwhole-genome shotgun bisulfite sequencingMus musculus strain B6NCrl forebrain tissue embryo (12.5 days)Joe Ecker, Salk
released
ENCSR647QBVpolyA plus RNA-seqMus musculus strain B6NCrl forebrain tissue embryo (12.5 days)Barbara Wold, Caltech
released
Control experiments
1 control experiment
Accession
Control type
Biosample summary
Lab
Status
Cart
ENCSR523QKOinput libraryMus musculus strain B6NCrl forebrain tissue embryo (12.5 days)Bing Ren, UCSD
released