Summary for ENCSR247DVY
doi:10.17989/ENCSR247DVY
Summary
- Status
- released
- Description
- Reference epigenome for human MCF-7 cell line
- Donor diversity
- single
- Assay
- ChIP-seq, polyA plus RNA-seq, RNA-seq, small RNA-seq, microRNA-seq, DNase-seq, ATAC-seq
- Target
- H3K4me1, H3K27ac, H3K36me3, H3K27me3, H3K9me3, EP300, POLR2A, H3K4me3, CTCF
- Biosample summary
- Homo sapiens MCF-7
- Diseases
- Not reported
Attribution
ENCODE3 project
- Lab
- ENCODE Consortium
- Award
- U41HG006992 (J. Michael Cherry, Stanford)
- Project
- ENCODE
- External resources
Experiments in ENCSR247DVY
Experiments
15 experiments
Accession | Assay | Target | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|---|
| ENCSR000BTR | ChIP-seq | EP300 | Homo sapiens MCF-7 | Richard Myers, HAIB | released | |
| ENCSR000CPT | polyA plus RNA-seq | Homo sapiens MCF-7 | Thomas Gingeras, CSHL | released | ||
| ENCSR000CSW | small RNA-seq | Homo sapiens MCF-7 | Thomas Gingeras, CSHL | released | ||
| ENCSR000DMT | ChIP-seq | POLR2A | Homo sapiens MCF-7 | Vishwanath Iyer, UTA | released | |
| ENCSR000EPH | DNase-seq | Homo sapiens MCF-7 | John Stamatoyannopoulos, UW | released | ||
| ENCSR000EWP | ChIP-seq | H3K27me3 | Homo sapiens MCF-7 | Peggy Farnham, USC | released | |
| ENCSR343HIX | microRNA-seq | Homo sapiens MCF-7 | Ali Mortazavi, UCI | released | ||
| ENCSR422SUG | ATAC-seq | Homo sapiens MCF-7 | Michael Snyder, Stanford | released | ||
| ENCSR493NBY | ChIP-seq | H3K4me1 | Homo sapiens MCF-7 | Bradley Bernstein, Broad | released | |
| ENCSR560BUE | ChIP-seq | CTCF | Homo sapiens MCF-7 | Bradley Bernstein, Broad | released | |
| ENCSR610IYQ | ChIP-seq | H3K36me3 | Homo sapiens MCF-7 | Bradley Bernstein, Broad | released | |
| ENCSR752UOD | ChIP-seq | H3K27ac | Homo sapiens MCF-7 | Bradley Bernstein, Broad | released | |
| ENCSR985MIB | ChIP-seq | H3K4me3 | Homo sapiens MCF-7 | Bradley Bernstein, Broad | released | |
| ENCSR999WHE | ChIP-seq | H3K9me3 | Homo sapiens MCF-7 | Bradley Bernstein, Broad | released | |
| ENCSR355JZC | RNA-seq | Homo sapiens MCF-7 | Barbara Wold, Caltech | released |
Control experiments
4 control experiments
Accession | Control type | Biosample summary | Lab | Status | Cart |
|---|---|---|---|---|---|
| ENCSR000AHE | input library | Homo sapiens MCF-7 | Richard Myers, HAIB | released | |
| ENCSR000DMW | input library | Homo sapiens MCF-7 | Vishwanath Iyer, UTA | released | |
| ENCSR000EWW | input library | Homo sapiens MCF-7 | Peggy Farnham, USC | released | |
| ENCSR768LHG | input library | Homo sapiens MCF-7 | Bradley Bernstein, Broad | released |